Query 023188
Match_columns 286
No_of_seqs 257 out of 2017
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 17:49:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bdo_A Acetyl-COA carboxylase; 99.7 1.5E-16 5E-21 119.9 9.5 76 210-285 5-80 (80)
2 2kcc_A Acetyl-COA carboxylase 99.6 3.1E-15 1E-19 114.6 7.1 69 210-286 6-74 (84)
3 1z6h_A Biotin/lipoyl attachmen 99.6 8.4E-15 2.9E-19 107.4 8.8 69 211-286 1-69 (72)
4 3crk_C Dihydrolipoyllysine-res 99.5 1.9E-14 6.5E-19 110.6 8.3 65 215-286 17-82 (87)
5 1ghj_A E2, E2, the dihydrolipo 99.5 2.7E-14 9.3E-19 107.3 8.8 66 214-286 12-77 (79)
6 2dn8_A Acetyl-COA carboxylase 99.5 3E-14 1E-18 112.3 9.0 69 210-286 18-86 (100)
7 2d5d_A Methylmalonyl-COA decar 99.5 4.9E-14 1.7E-18 103.4 8.8 69 210-285 6-74 (74)
8 1dcz_A Transcarboxylase 1.3S s 99.5 6E-14 2E-18 104.2 9.1 71 208-285 7-77 (77)
9 3n6r_A Propionyl-COA carboxyla 99.5 3.4E-14 1.2E-18 145.2 9.7 71 208-285 611-681 (681)
10 1k8m_A E2 component of branche 99.5 3.9E-14 1.3E-18 110.7 7.6 64 216-286 17-80 (93)
11 2dnc_A Pyruvate dehydrogenase 99.5 4E-14 1.4E-18 111.9 7.4 64 216-286 20-84 (98)
12 2l5t_A Lipoamide acyltransfera 99.5 6.2E-14 2.1E-18 104.7 7.1 65 214-285 12-76 (77)
13 2dne_A Dihydrolipoyllysine-res 99.5 6.7E-14 2.3E-18 112.6 7.8 63 216-285 20-83 (108)
14 3va7_A KLLA0E08119P; carboxyla 99.5 9.3E-14 3.2E-18 150.1 10.5 71 207-284 1165-1235(1236)
15 2k7v_A Dihydrolipoyllysine-res 99.5 1.3E-14 4.6E-19 110.8 2.2 69 211-286 4-72 (85)
16 1y8o_B Dihydrolipoyllysine-res 99.4 1.9E-13 6.5E-18 113.6 8.3 63 216-285 40-103 (128)
17 2ejm_A Methylcrotonoyl-COA car 99.4 2.4E-13 8.2E-18 107.0 8.4 71 209-286 14-84 (99)
18 2jku_A Propionyl-COA carboxyla 99.4 2.8E-14 9.6E-19 111.5 2.7 70 209-285 25-94 (94)
19 1qjo_A Dihydrolipoamide acetyl 99.4 2.2E-13 7.6E-18 102.2 7.4 63 217-286 14-76 (80)
20 3hbl_A Pyruvate carboxylase; T 99.4 2.4E-13 8.2E-18 146.1 9.1 73 207-286 1075-1147(1150)
21 1gjx_A Pyruvate dehydrogenase; 99.4 6.1E-14 2.1E-18 105.6 3.1 68 212-286 10-77 (81)
22 3u9t_A MCC alpha, methylcroton 99.4 2.9E-14 9.9E-19 145.5 0.2 71 209-286 602-672 (675)
23 1pmr_A Dihydrolipoyl succinylt 99.4 2.3E-14 7.8E-19 108.3 -0.9 64 216-286 15-78 (80)
24 1iyu_A E2P, dihydrolipoamide a 99.4 6.8E-13 2.3E-17 99.6 6.7 61 219-286 14-74 (79)
25 1zko_A Glycine cleavage system 99.2 1.7E-12 5.8E-17 109.0 2.0 69 212-286 39-114 (136)
26 3bg3_A Pyruvate carboxylase, m 99.2 3.1E-12 1.1E-16 131.8 3.1 70 209-285 649-718 (718)
27 2qf7_A Pyruvate carboxylase pr 99.2 8.9E-12 3.1E-16 134.1 5.2 70 209-285 1095-1164(1165)
28 3dva_I Dihydrolipoyllysine-res 99.2 3.1E-12 1.1E-16 124.6 0.0 62 217-285 16-77 (428)
29 1zy8_K Pyruvate dehydrogenase 99.1 5.7E-12 1.9E-16 113.8 0.0 62 217-285 17-79 (229)
30 2k32_A A; NMR {Campylobacter j 99.0 2.9E-10 1E-14 90.6 5.6 69 211-286 3-101 (116)
31 1hpc_A H protein of the glycin 98.8 4.7E-09 1.6E-13 87.5 4.5 69 212-286 30-105 (131)
32 1onl_A Glycine cleavage system 98.7 6E-09 2E-13 86.5 4.6 54 233-286 45-105 (128)
33 3a7l_A H-protein, glycine clea 98.7 7.2E-09 2.5E-13 86.0 4.8 69 212-286 31-106 (128)
34 3lnn_A Membrane fusion protein 98.3 1.3E-06 4.3E-11 81.0 7.3 70 209-285 57-203 (359)
35 3ne5_B Cation efflux system pr 98.2 2.6E-06 8.9E-11 81.6 7.5 69 210-285 122-239 (413)
36 2f1m_A Acriflavine resistance 98.2 5.4E-07 1.8E-11 80.7 2.4 69 210-285 23-164 (277)
37 3fpp_A Macrolide-specific effl 98.2 1.9E-06 6.5E-11 79.2 6.1 71 208-285 30-188 (341)
38 3klr_A Glycine cleavage system 98.1 3.4E-06 1.2E-10 69.8 5.1 53 233-285 41-100 (125)
39 1vf7_A Multidrug resistance pr 98.0 3E-06 1E-10 79.5 3.6 70 209-285 43-171 (369)
40 3na6_A Succinylglutamate desuc 97.9 4.4E-05 1.5E-09 71.6 9.4 67 209-285 257-327 (331)
41 3mxu_A Glycine cleavage system 97.8 2.2E-05 7.5E-10 66.4 5.3 41 233-273 63-103 (143)
42 3tzu_A GCVH, glycine cleavage 97.8 1.7E-05 5.9E-10 66.5 4.5 37 233-269 58-94 (137)
43 3cdx_A Succinylglutamatedesucc 97.7 7.6E-05 2.6E-09 70.4 8.5 67 209-285 267-337 (354)
44 4dk0_A Putative MACA; alpha-ha 97.7 3.6E-06 1.2E-10 78.0 -1.6 70 208-284 31-188 (369)
45 3fmc_A Putative succinylglutam 97.6 8.2E-05 2.8E-09 70.9 7.5 66 209-284 290-361 (368)
46 2dn8_A Acetyl-COA carboxylase 97.5 4.3E-05 1.5E-09 59.6 2.4 45 241-285 5-49 (100)
47 1ax3_A Iiaglc, glucose permeas 97.4 0.00017 5.8E-09 61.9 6.0 65 210-285 13-116 (162)
48 3hgb_A Glycine cleavage system 97.4 0.00016 5.3E-09 61.9 5.3 37 233-269 68-104 (155)
49 1f3z_A EIIA-GLC, glucose-speci 97.4 0.00019 6.5E-09 61.6 5.6 65 210-285 13-116 (161)
50 2gpr_A Glucose-permease IIA co 97.4 0.00023 7.7E-09 60.7 5.6 65 210-285 8-111 (154)
51 2qj8_A MLR6093 protein; struct 97.0 0.0021 7.2E-08 59.8 8.3 66 210-285 258-327 (332)
52 1z6h_A Biotin/lipoyl attachmen 96.8 0.0012 4E-08 47.4 4.0 31 255-285 1-31 (72)
53 2d5d_A Methylmalonyl-COA decar 96.6 0.0019 6.6E-08 46.3 4.3 32 254-285 6-37 (74)
54 1dcz_A Transcarboxylase 1.3S s 96.5 0.0023 8E-08 46.5 4.2 33 253-285 8-40 (77)
55 2kcc_A Acetyl-COA carboxylase 96.3 0.002 6.7E-08 48.5 2.8 32 254-285 6-37 (84)
56 2l5t_A Lipoamide acyltransfera 95.8 0.0088 3E-07 43.6 4.1 33 210-249 45-77 (77)
57 2xha_A NUSG, transcription ant 95.8 0.0095 3.3E-07 52.5 4.9 51 226-282 19-98 (193)
58 2ejm_A Methylcrotonoyl-COA car 95.8 0.0062 2.1E-07 47.1 3.3 33 253-285 14-46 (99)
59 3fpp_A Macrolide-specific effl 95.7 0.01 3.5E-07 54.2 5.2 54 232-286 11-64 (341)
60 2jku_A Propionyl-COA carboxyla 95.7 0.006 2.1E-07 46.9 3.0 33 253-285 25-57 (94)
61 3lnn_A Membrane fusion protein 95.7 0.0068 2.3E-07 55.7 3.8 55 232-286 35-90 (359)
62 1bdo_A Acetyl-COA carboxylase; 95.3 0.0086 3E-07 44.0 2.7 32 254-285 5-43 (80)
63 1qjo_A Dihydrolipoamide acetyl 95.3 0.01 3.5E-07 43.5 2.9 34 209-249 43-76 (80)
64 1iyu_A E2P, dihydrolipoamide a 95.0 0.02 6.7E-07 42.0 3.9 34 210-250 42-75 (79)
65 1vf7_A Multidrug resistance pr 94.9 0.016 5.4E-07 54.1 3.8 43 243-286 34-76 (369)
66 2xhc_A Transcription antitermi 94.9 0.024 8.2E-07 54.0 4.9 50 227-282 60-138 (352)
67 1ghj_A E2, E2, the dihydrolipo 94.8 0.02 6.9E-07 41.9 3.3 34 209-249 44-77 (79)
68 3crk_C Dihydrolipoyllysine-res 94.6 0.037 1.3E-06 41.6 4.5 26 260-285 18-43 (87)
69 1k8m_A E2 component of branche 94.6 0.033 1.1E-06 42.7 4.3 26 260-285 17-42 (93)
70 2dne_A Dihydrolipoyllysine-res 94.5 0.028 9.5E-07 44.5 3.7 26 260-285 20-45 (108)
71 4dk0_A Putative MACA; alpha-ha 94.4 0.016 5.5E-07 53.3 2.3 54 232-286 12-65 (369)
72 1gjx_A Pyruvate dehydrogenase; 94.3 0.031 1.1E-06 41.0 3.3 30 256-285 10-39 (81)
73 2k7v_A Dihydrolipoyllysine-res 94.1 0.017 5.7E-07 43.2 1.5 36 208-250 38-73 (85)
74 1pmr_A Dihydrolipoyl succinylt 94.0 0.02 6.7E-07 42.3 1.7 34 209-249 45-78 (80)
75 3ne5_B Cation efflux system pr 94.0 0.051 1.8E-06 51.7 5.0 54 232-285 99-154 (413)
76 2gpr_A Glucose-permease IIA co 93.9 0.026 9E-07 47.8 2.6 73 210-285 45-154 (154)
77 2dnc_A Pyruvate dehydrogenase 93.8 0.043 1.5E-06 42.5 3.4 26 260-285 20-45 (98)
78 3d4r_A Domain of unknown funct 93.4 0.095 3.3E-06 45.2 5.1 43 230-272 114-157 (169)
79 1y8o_B Dihydrolipoyllysine-res 93.2 0.088 3E-06 43.2 4.4 26 260-285 40-65 (128)
80 3our_B EIIA, phosphotransferas 93.1 0.11 3.9E-06 45.3 5.2 65 210-285 35-138 (183)
81 2xha_A NUSG, transcription ant 93.0 0.04 1.4E-06 48.5 2.2 50 227-282 78-157 (193)
82 2auk_A DNA-directed RNA polyme 92.9 0.12 4E-06 45.0 5.0 48 226-275 60-107 (190)
83 1ax3_A Iiaglc, glucose permeas 92.8 0.058 2E-06 46.1 2.9 77 209-285 49-161 (162)
84 1f3z_A EIIA-GLC, glucose-speci 91.7 0.17 5.7E-06 43.2 4.5 75 210-285 50-160 (161)
85 2bco_A Succinylglutamate desuc 91.4 0.21 7.1E-06 46.9 5.2 62 211-284 265-326 (350)
86 2k32_A A; NMR {Campylobacter j 91.3 0.12 4.1E-06 40.3 2.9 35 209-250 67-102 (116)
87 3n6r_A Propionyl-COA carboxyla 91.2 0.15 5.2E-06 52.0 4.4 33 253-285 612-644 (681)
88 3our_B EIIA, phosphotransferas 90.0 0.3 1E-05 42.7 4.5 20 230-249 120-139 (183)
89 3lu0_D DNA-directed RNA polyme 88.2 0.36 1.2E-05 53.1 4.5 37 227-265 1000-1036(1407)
90 3bg3_A Pyruvate carboxylase, m 88.0 0.29 1E-05 50.5 3.6 32 254-285 650-681 (718)
91 3hbl_A Pyruvate carboxylase; T 87.3 0.41 1.4E-05 51.8 4.3 32 254-285 1078-1109(1150)
92 3va7_A KLLA0E08119P; carboxyla 86.8 0.45 1.5E-05 51.9 4.3 32 254-285 1168-1199(1236)
93 2xhc_A Transcription antitermi 86.5 0.16 5.5E-06 48.3 0.6 50 227-282 118-197 (352)
94 2f1m_A Acriflavine resistance 85.9 0.68 2.3E-05 40.7 4.3 34 209-249 130-165 (277)
95 3u9t_A MCC alpha, methylcroton 85.8 0.15 5.2E-06 51.9 0.0 32 254-285 603-634 (675)
96 2qf7_A Pyruvate carboxylase pr 84.1 0.69 2.3E-05 50.1 4.1 29 256-284 1098-1126(1165)
97 3dva_I Dihydrolipoyllysine-res 80.1 0.35 1.2E-05 46.8 0.0 35 210-251 46-80 (428)
98 1zy8_K Pyruvate dehydrogenase 77.4 0.47 1.6E-05 42.3 0.0 33 210-249 47-80 (229)
99 3fmc_A Putative succinylglutam 69.7 3.8 0.00013 38.6 4.2 33 252-285 289-321 (368)
100 3na6_A Succinylglutamate desuc 63.7 5.4 0.00019 36.9 3.9 34 251-285 255-288 (331)
101 3lu0_D DNA-directed RNA polyme 60.3 3.7 0.00013 45.4 2.3 22 226-247 1103-1124(1407)
102 3cdx_A Succinylglutamatedesucc 59.7 9.4 0.00032 35.4 4.8 34 251-285 265-298 (354)
103 3it5_A Protease LASA; metallop 57.8 11 0.00039 32.1 4.6 13 210-222 49-61 (182)
104 1uou_A Thymidine phosphorylase 56.7 12 0.0004 36.9 5.0 39 247-285 366-433 (474)
105 2auk_A DNA-directed RNA polyme 55.7 20 0.00069 30.8 5.9 69 211-286 10-83 (190)
106 3it5_A Protease LASA; metallop 54.5 6.8 0.00023 33.5 2.6 20 230-249 85-104 (182)
107 3d4r_A Domain of unknown funct 54.1 9.3 0.00032 32.8 3.4 41 234-285 92-132 (169)
108 2gu1_A Zinc peptidase; alpha/b 53.8 6.6 0.00022 36.7 2.6 19 230-248 284-302 (361)
109 1brw_A PYNP, protein (pyrimidi 50.3 16 0.00055 35.4 4.8 38 248-285 330-398 (433)
110 1yw4_A Succinylglutamate desuc 50.0 2.6 8.9E-05 39.2 -0.8 36 230-265 277-317 (341)
111 3vr4_A V-type sodium ATPase ca 49.4 24 0.00083 35.8 6.1 41 231-273 130-173 (600)
112 2dsj_A Pyrimidine-nucleoside ( 47.8 17 0.00057 35.3 4.4 20 266-285 371-390 (423)
113 2tpt_A Thymidine phosphorylase 46.1 7.8 0.00027 37.7 1.9 22 230-251 385-406 (440)
114 1zko_A Glycine cleavage system 44.9 13 0.00043 30.6 2.7 32 254-285 37-69 (136)
115 3tuf_B Stage II sporulation pr 43.9 26 0.00089 31.4 4.8 19 266-284 134-152 (245)
116 1hpc_A H protein of the glycin 43.0 13 0.00045 30.2 2.5 32 254-285 28-60 (131)
117 2tpt_A Thymidine phosphorylase 42.2 15 0.0005 35.8 3.1 39 247-285 334-403 (440)
118 3csq_A Morphogenesis protein 1 42.0 10 0.00036 35.1 2.0 21 229-249 250-270 (334)
119 3tuf_B Stage II sporulation pr 41.9 11 0.00038 33.8 2.1 21 230-250 135-155 (245)
120 1brw_A PYNP, protein (pyrimidi 40.5 19 0.00065 34.9 3.6 22 230-251 380-401 (433)
121 2dsj_A Pyrimidine-nucleoside ( 40.3 19 0.00066 34.8 3.6 22 230-251 372-393 (423)
122 2qj8_A MLR6093 protein; struct 40.3 23 0.00078 32.3 4.0 32 253-285 257-288 (332)
123 3nyy_A Putative glycyl-glycine 40.0 12 0.00041 33.6 2.0 19 231-249 183-201 (252)
124 3h5q_A PYNP, pyrimidine-nucleo 38.8 11 0.00038 36.6 1.7 19 230-248 383-401 (436)
125 3h5q_A PYNP, pyrimidine-nucleo 38.1 33 0.0011 33.3 4.9 19 267-285 383-401 (436)
126 1onl_A Glycine cleavage system 38.0 19 0.00064 29.1 2.7 32 254-285 28-60 (128)
127 2hsi_A Putative peptidase M23; 37.8 14 0.00048 33.8 2.1 20 230-249 232-251 (282)
128 1uou_A Thymidine phosphorylase 37.7 22 0.00076 34.9 3.6 23 229-251 414-436 (474)
129 1qwy_A Peptidoglycan hydrolase 37.5 13 0.00044 34.4 1.8 20 230-249 239-258 (291)
130 3a7l_A H-protein, glycine clea 37.4 20 0.00067 29.0 2.7 32 254-285 29-61 (128)
131 2hsi_A Putative peptidase M23; 37.1 35 0.0012 31.1 4.6 60 209-284 190-249 (282)
132 1o4u_A Type II quinolic acid p 35.9 19 0.00063 33.0 2.6 20 230-249 75-94 (285)
133 1x1o_A Nicotinate-nucleotide p 35.0 19 0.00067 32.8 2.6 20 230-249 76-95 (286)
134 1qpo_A Quinolinate acid phosph 34.3 20 0.00068 32.7 2.5 20 230-249 75-94 (284)
135 3nyy_A Putative glycyl-glycine 33.4 43 0.0015 29.9 4.5 58 211-284 141-199 (252)
136 3tqv_A Nicotinate-nucleotide p 32.2 23 0.00079 32.6 2.6 20 230-249 79-98 (287)
137 3l0g_A Nicotinate-nucleotide p 31.3 24 0.00083 32.7 2.6 20 230-249 88-107 (300)
138 2fqm_A Phosphoprotein, P prote 27.7 1.3E+02 0.0043 22.3 5.4 45 105-149 25-69 (75)
139 2b7n_A Probable nicotinate-nuc 27.6 31 0.001 31.0 2.5 20 230-249 62-81 (273)
140 3gnn_A Nicotinate-nucleotide p 27.6 31 0.0011 31.9 2.6 20 230-249 90-109 (298)
141 2lmc_B DNA-directed RNA polyme 27.6 19 0.00064 27.4 0.9 20 226-245 63-82 (84)
142 3paj_A Nicotinate-nucleotide p 26.7 32 0.0011 32.1 2.6 20 230-249 112-131 (320)
143 1qap_A Quinolinic acid phospho 26.2 34 0.0012 31.3 2.6 20 230-249 89-108 (296)
144 3gqb_A V-type ATP synthase alp 25.3 90 0.0031 31.5 5.6 37 231-267 122-160 (578)
145 1qwy_A Peptidoglycan hydrolase 24.7 85 0.0029 28.9 5.0 20 265-284 237-256 (291)
146 2jbm_A Nicotinate-nucleotide p 23.8 36 0.0012 31.1 2.3 20 230-249 75-94 (299)
147 3mfy_A V-type ATP synthase alp 20.8 1.1E+02 0.0037 31.0 5.2 37 231-267 123-162 (588)
No 1
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.68 E-value=1.5e-16 Score=119.85 Aligned_cols=76 Identities=54% Similarity=0.960 Sum_probs=73.3
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+||+.|++++.+.+...|++++||.|++||.|+.||+||+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 3699999999999988999999999999999999999999999999999999999999999999999999999985
No 2
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-15 Score=114.63 Aligned_cols=69 Identities=20% Similarity=0.325 Sum_probs=66.2
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
..|+||+.|++++ |+|++||.|++||+|+.||+||+.++|+||.+|+|.+++ +.|+.|..|++|++|.+
T Consensus 6 ~~v~a~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~ 74 (84)
T 2kcc_A 6 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL 74 (84)
T ss_dssp TEECCSSSCCEEE-------ESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred ceEECCCCEEEEE-------EECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence 4699999999999 999999999999999999999999999999999999999 99999999999999864
No 3
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.57 E-value=8.4e-15 Score=107.38 Aligned_cols=69 Identities=36% Similarity=0.582 Sum_probs=66.1
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
.|+||+.|++.+ |++++||.|++||+|+.||++|+..+|+||.+|+|.+++++.|+.|..|++|+.|.+
T Consensus 1 ~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 1 TVSIQMAGNLWK-------VHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp CEECCSSEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred CEECcccEEEEE-------EEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 378999999999 999999999999999999999999999999999999999999999999999999864
No 4
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.53 E-value=1.9e-14 Score=110.60 Aligned_cols=65 Identities=34% Similarity=0.483 Sum_probs=61.8
Q ss_pred CcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEEcC
Q 023188 215 PMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVIVP 286 (286)
Q Consensus 215 P~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~~L~~Iep 286 (286)
...|++.+ |+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+ .|..|++|++|++
T Consensus 17 ~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 17 MTMGTVQR-------WEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp CCEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred CCcEEEEE-------EEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 36789999 99999999999999999999999999999999999999999999 8999999999863
No 5
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.53 E-value=2.7e-14 Score=107.27 Aligned_cols=66 Identities=27% Similarity=0.355 Sum_probs=62.8
Q ss_pred CCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 214 CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 214 AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
+++.|++.+ |+|++||.|++||+|+.||+||+..+|+||++|+|.++++++|+.|..|++|++|.+
T Consensus 12 ~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 12 SIADGTVAT-------WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SCSCEEECC-------CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred CCCCEEEEE-------EEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 457899998 999999999999999999999999999999999999999999999999999999864
No 6
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=112.28 Aligned_cols=69 Identities=19% Similarity=0.337 Sum_probs=66.3
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
..|+||+.|++.+ |+|++||.|++||+|+.||+||+..+|+||.+|+|. +++++|+.|..|++|++|.+
T Consensus 18 ~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~ 86 (100)
T 2dn8_A 18 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL 86 (100)
T ss_dssp TEEECSSCEEEEE-------ESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred cEEeCCCCEEEEE-------EEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence 4799999999999 999999999999999999999999999999999999 99999999999999999863
No 7
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.51 E-value=4.9e-14 Score=103.39 Aligned_cols=69 Identities=36% Similarity=0.670 Sum_probs=66.5
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+||+.|++.+ |++++||.|++||.|+.|+++++..+|+||.+|+|.+++++.|+.|..|++|++|+
T Consensus 6 ~~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 6 NVVSAPMPGKVLR-------VLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CEEECSSCEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred eEEecCCCEEEEE-------EEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 4799999999999 89999999999999999999999999999999999999999999999999999985
No 8
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.51 E-value=6e-14 Score=104.24 Aligned_cols=71 Identities=34% Similarity=0.545 Sum_probs=67.6
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+...|+||+.|++.+ |++++||.|++||+|+.|+.+|+..+|+||.+|+|.+++++.|+.|..|++|++|+
T Consensus 7 ~~~~v~a~~~G~v~~-------~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 7 GEGEIPAPLAGTVSK-------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp CSSEEEBSSSCEEEE-------ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCeEEECCCCEEEEE-------EEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 345799999999998 89999999999999999999999999999999999999999999999999999985
No 9
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.50 E-value=3.4e-14 Score=145.18 Aligned_cols=71 Identities=39% Similarity=0.662 Sum_probs=68.2
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
....|+|||+|++++ |+|++||.|++||+|++||+|||+++|+||.+|+|++|++++|+.|..|++|++|+
T Consensus 611 ~~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 611 TSKMLLCPMPGLIVK-------VDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CCSEEECCSCEEEEE-------ECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCCeEECCCcEEEEE-------EEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 345799999999999 99999999999999999999999999999999999999999999999999999985
No 10
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.50 E-value=3.9e-14 Score=110.72 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=61.6
Q ss_pred cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|++|++
T Consensus 17 ~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 17 REVTVKE-------WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp CCEEEEE-------ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred CCEEEEE-------EEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 5799999 999999999999999999999999999999999999999999999999999999863
No 11
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4e-14 Score=111.92 Aligned_cols=64 Identities=27% Similarity=0.467 Sum_probs=61.2
Q ss_pred cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCcc-CCCCeEEEEcC
Q 023188 216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSV-SVDTPLLVIVP 286 (286)
Q Consensus 216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V-~~G~~L~~Iep 286 (286)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| ..|++|++|++
T Consensus 20 ~~G~i~~-------~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~ 84 (98)
T 2dnc_A 20 EEGNIVK-------WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 84 (98)
T ss_dssp SEECEEE-------ESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEEC
T ss_pred ccEEEEE-------EEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEec
Confidence 5789999 9999999999999999999999999999999999999999999999 99999999863
No 12
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.48 E-value=6.2e-14 Score=104.66 Aligned_cols=65 Identities=32% Similarity=0.357 Sum_probs=62.6
Q ss_pred CCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 214 CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 214 AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+++.|++.+ |+|++||.|++||+|+.||+||+..+|+||.+|+|.+++++.|+.|..|++|++|+
T Consensus 12 ~~~~G~v~~-------~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 12 GVTEGEIVR-------WDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp SCCCEEEEE-------CSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCccEEEEE-------EEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 568899999 99999999999999999999999999999999999999999999999999999986
No 13
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.48 E-value=6.7e-14 Score=112.61 Aligned_cols=63 Identities=29% Similarity=0.395 Sum_probs=60.8
Q ss_pred cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEEc
Q 023188 216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVIV 285 (286)
Q Consensus 216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~~L~~Ie 285 (286)
..|++.+ |+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+ .|..|++|++|.
T Consensus 20 ~~G~v~~-------~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~ 83 (108)
T 2dne_A 20 QAGTIAR-------WEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV 83 (108)
T ss_dssp CEEEEEE-------CSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred ccEEEEE-------EEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence 5789999 99999999999999999999999999999999999999999999 899999999986
No 14
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.47 E-value=9.3e-14 Score=150.12 Aligned_cols=71 Identities=34% Similarity=0.485 Sum_probs=68.3
Q ss_pred CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
.+...|+|||+|+|++ |+|++||.|++||+||+||+|||+++|+||++|+|++|++++|+.|++|++|++|
T Consensus 1165 ~~~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1165 DDAELLYSEYTGRFWK-------PVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp TTCEEEECSSCEEEEE-------ESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CCCcEEeCCCcEEEEE-------EEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 4556899999999999 9999999999999999999999999999999999999999999999999999987
No 15
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.46 E-value=1.3e-14 Score=110.83 Aligned_cols=69 Identities=25% Similarity=0.329 Sum_probs=65.8
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
.|++|..|++.+ |+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|.+
T Consensus 4 ~i~~p~~G~v~~-------~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~ 72 (85)
T 2k7v_A 4 EVNVPDIVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 72 (85)
T ss_dssp CCCCCSCCCCCS-------CCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEEC
T ss_pred EEECCCeEEEEE-------EEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 578888899998 999999999999999999999999999999999999999999999999999999863
No 16
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.44 E-value=1.9e-13 Score=113.63 Aligned_cols=63 Identities=37% Similarity=0.534 Sum_probs=60.5
Q ss_pred cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEEc
Q 023188 216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVIV 285 (286)
Q Consensus 216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~~L~~Ie 285 (286)
..|++.+ |+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+ .|..|++|++|+
T Consensus 40 ~~G~V~~-------~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~ 103 (128)
T 1y8o_B 40 TMGTVQR-------WEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 103 (128)
T ss_dssp SEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred ccEEEEE-------EecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEe
Confidence 4689998 99999999999999999999999999999999999999999998 899999999986
No 17
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=107.03 Aligned_cols=71 Identities=31% Similarity=0.548 Sum_probs=67.6
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
...|++|+.|++.+ |+|++||.|++||+|+.|+.+|+..+|+||.+|+|.+++++.|+.|..|++|++|.+
T Consensus 14 ~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~ 84 (99)
T 2ejm_A 14 QGGPLAPMTGTIEK-------VFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEE 84 (99)
T ss_dssp CSSCBCSSSEEEEE-------ECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECC
T ss_pred ceEEecCCCEEEEE-------EECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEEC
Confidence 34799999999999 999999999999999999999999999999999999999999999999999999863
No 18
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.44 E-value=2.8e-14 Score=111.52 Aligned_cols=70 Identities=34% Similarity=0.592 Sum_probs=32.2
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|+||+.|++.+ |+|++||.|++||+|+.||+||+..+|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 25 ~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 25 SSVLRSPMPGVVVA-------VSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp CCCCCCSSSCEEEE-------ECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred ceEEECCCCEEEEE-------EECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 35799999999999 99999999999999999999999999999999999999999999999999999875
No 19
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.43 E-value=2.2e-13 Score=102.16 Aligned_cols=63 Identities=25% Similarity=0.329 Sum_probs=60.9
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
.|++.+ |+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus 14 ~G~v~~-------~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 14 EVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEE-------CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred CEEEEE-------EEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence 889998 999999999999999999999999999999999999999999999999999999863
No 20
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.42 E-value=2.4e-13 Score=146.05 Aligned_cols=73 Identities=27% Similarity=0.417 Sum_probs=69.1
Q ss_pred CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
.+...|.|||.|++++ |+|++||.|++||+||+||+|||+++|+||.+|+|++|++++|+.|..|++|++|++
T Consensus 1075 ~~~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1075 SNPSHIGAQMPGSVTE-------VKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp TCSSEEECSSSEEEEE-------ECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred CCCceeecCceEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 3446899999999999 999999999999999999999999999999999999999999999999999999974
No 21
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.41 E-value=6.1e-14 Score=105.64 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=64.5
Q ss_pred ccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 212 I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
+.+++.|++.+ |+|++||.|++||+|+.||+||+..+|+||.+|+|.+++++.|+.|..|++|++|.+
T Consensus 10 ~g~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 10 IGGHENVDIIA-------VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp CSSCSSEEEEE-------ECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred CCCCCcEEEEE-------EEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 44678999999 999999999999999999999999999999999999999999999999999999864
No 22
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.39 E-value=2.9e-14 Score=145.53 Aligned_cols=71 Identities=30% Similarity=0.558 Sum_probs=0.0
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
...|+|||+|++++ |+|++||.|++||+||+||+|||+++|+||.+|+|++|++++|+.|..|++|++|++
T Consensus 602 ~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~ 672 (675)
T 3u9t_A 602 QGGLSAPMNGSIVR-------VLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDE 672 (675)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCeEECCCCEEEEE-------EEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEec
Confidence 35799999999999 999999999999999999999999999999999999999999999999999999864
No 23
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.38 E-value=2.3e-14 Score=108.25 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=61.2
Q ss_pred cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
..|++.+ |+|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.|..|++|++|++
T Consensus 15 ~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 15 ADATVAT-------WHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp SCEECCB-------CCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred ccEEEEE-------EECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 5788888 999999999999999999999999999999999999999999999999999998864
No 24
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.37 E-value=6.8e-13 Score=99.58 Aligned_cols=61 Identities=18% Similarity=0.356 Sum_probs=58.1
Q ss_pred EEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 219 TFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 219 ~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
++.+ |+|++||.|++||+|+.||+||+..+|+||.+|+|.+++++.|+.|..|++|+.|.+
T Consensus 14 ~i~~-------~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 14 EVIE-------LLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEE-------ECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred EEEE-------EecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 6666 999999999999999999999999999999999999999999999999999999864
No 25
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=99.23 E-value=1.7e-12 Score=109.02 Aligned_cols=69 Identities=26% Similarity=0.329 Sum_probs=58.6
Q ss_pred ccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEE---EcCCCCccC---CCC-eEEEE
Q 023188 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEI---LAEDGKSVS---VDT-PLLVI 284 (286)
Q Consensus 212 I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~I---lve~Gd~V~---~G~-~L~~I 284 (286)
+.+|+.|.+... -+.++||.|++||+||+||+||++++|.||++|+|++| ++++|+.|. ||+ .|++|
T Consensus 39 ~a~~~lG~i~~V------~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i 112 (136)
T 1zko_A 39 HAQEQLGDVVYV------DLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKM 112 (136)
T ss_dssp HHHHHHCSEEEE------ECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEE
T ss_pred hhcccCCCcEEE------EecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEE
Confidence 455666654431 11299999999999999999999999999999999999 899999999 998 99998
Q ss_pred cC
Q 023188 285 VP 286 (286)
Q Consensus 285 ep 286 (286)
++
T Consensus 113 ~~ 114 (136)
T 1zko_A 113 EI 114 (136)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 26
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=99.21 E-value=3.1e-12 Score=131.83 Aligned_cols=70 Identities=27% Similarity=0.450 Sum_probs=67.2
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|.|||.|++++ |+|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 649 ~~~v~ap~~G~V~~-------v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 649 KGQIGAPMPGKVID-------IKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp SSCEECSSCEEEEE-------ECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CceEeCCCCeEEEE-------EEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 35799999999999 99999999999999999999999999999999999999999999999999999874
No 27
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.19 E-value=8.9e-12 Score=134.08 Aligned_cols=70 Identities=37% Similarity=0.583 Sum_probs=61.0
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|.|||.|++++ |+|++||.|++||+|++||+|||.++|+|+.+|+|+++++++|+.|..|++|++|+
T Consensus 1095 ~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1095 AAHVGAPMPGVISR-------VFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp TTEEECSSCEEEEE-------ECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CceeeCCCCeEEEE-------EEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 35799999999999 99999999999999999999999999999999999999999999999999999986
No 28
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.16 E-value=3.1e-12 Score=124.65 Aligned_cols=62 Identities=31% Similarity=0.534 Sum_probs=0.0
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
-|++++ |+|++||.|++||+||+||+||+.++|+|+++|+|.+|++++|+.|..|++|+.|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (428)
T 3dva_I 16 EGEIVK-------WFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD 77 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cEEEEE-------EEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEe
Confidence 477777 99999999999999999999999999999999999999999999999999999885
No 29
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.12 E-value=5.7e-12 Score=113.81 Aligned_cols=62 Identities=27% Similarity=0.524 Sum_probs=0.0
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCc-cCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS-VSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~-V~~G~~L~~Ie 285 (286)
.|++.+ |+|++||.|++||+||+||+||+.++|+|+++|+|.+|+++.|+. |..|++|++|+
T Consensus 17 eG~I~~-------w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~ 79 (229)
T 1zy8_K 17 EGNIVK-------WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 79 (229)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cEEEEE-------EecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEe
Confidence 567777 999999999999999999999999999999999999999999997 99999999875
No 30
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=99.01 E-value=2.9e-10 Score=90.63 Aligned_cols=69 Identities=36% Similarity=0.483 Sum_probs=63.1
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCee-----------------------------eeEecCCC
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLM-----------------------------NEIEADQS 261 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~-----------------------------~eI~Ap~s 261 (286)
.|.+++.|++.+ ++|++||.|++||+|+.|+..+.. ..|+||.+
T Consensus 3 ~v~a~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~ 75 (116)
T 2k32_A 3 IIKPQVSGVIVN-------KLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFD 75 (116)
T ss_dssp EECCSSCEEEEE-------ECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSS
T ss_pred EEeCcCCEEEEE-------EECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCC
Confidence 588999999998 899999999999999999987544 38999999
Q ss_pred eEEEEEEcCCCCccCCC-CeEEEEcC
Q 023188 262 GTIAEILAEDGKSVSVD-TPLLVIVP 286 (286)
Q Consensus 262 GvV~~Ilve~Gd~V~~G-~~L~~Iep 286 (286)
|+|.++.++.|+.|..| ++|+.|.+
T Consensus 76 G~V~~~~~~~G~~v~~g~~~l~~i~~ 101 (116)
T 2k32_A 76 GTIGDALVNIGDYVSASTTELVRVTN 101 (116)
T ss_dssp EEECCCSCCTTCEECTTTSCCEEEEC
T ss_pred EEEEEEECCCCCEEcCCCcEEEEEEC
Confidence 99999999999999999 99998853
No 31
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.76 E-value=4.7e-09 Score=87.48 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=55.1
Q ss_pred ccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE---cCCCCccC---CCC-eEEEE
Q 023188 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL---AEDGKSVS---VDT-PLLVI 284 (286)
Q Consensus 212 I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il---ve~Gd~V~---~G~-~L~~I 284 (286)
+..++.|.++.. -+.++||.|++||.||+||+||+.++|.||++|+|++|+ ..+.+.|. ||+ -||+|
T Consensus 30 ~a~~~lG~i~~v------~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i 103 (131)
T 1hpc_A 30 HAQDHLGEVVFV------ELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKI 103 (131)
T ss_dssp HHHHHHCSEEEE------ECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEE
T ss_pred hhcccCCCceEE------EecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEE
Confidence 445667765541 123999999999999999999999999999999999997 45566774 777 88887
Q ss_pred cC
Q 023188 285 VP 286 (286)
Q Consensus 285 ep 286 (286)
++
T Consensus 104 ~~ 105 (131)
T 1hpc_A 104 KP 105 (131)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 32
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.74 E-value=6e-09 Score=86.45 Aligned_cols=54 Identities=28% Similarity=0.438 Sum_probs=48.9
Q ss_pred cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc---CCCCcc---CCCC-eEEEEcC
Q 023188 233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA---EDGKSV---SVDT-PLLVIVP 286 (286)
Q Consensus 233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv---e~Gd~V---~~G~-~L~~Iep 286 (286)
++||+|++||.||+||+||+.++|.||++|+|++|+. .+.+.| .||+ -||+|++
T Consensus 45 ~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~ 105 (128)
T 1onl_A 45 EVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKP 105 (128)
T ss_dssp CTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEE
T ss_pred CCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEE
Confidence 9999999999999999999999999999999999964 577777 7887 8888863
No 33
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.73 E-value=7.2e-09 Score=85.97 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=55.7
Q ss_pred ccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc---CCCCccC---CCC-eEEEE
Q 023188 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA---EDGKSVS---VDT-PLLVI 284 (286)
Q Consensus 212 I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv---e~Gd~V~---~G~-~L~~I 284 (286)
+..++.|.+... -+.++|+.|++||.||+||+||+.++|.||++|+|++|+. .+.+.|. ||+ -||+|
T Consensus 31 ~a~~~lG~i~~v------~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i 104 (128)
T 3a7l_A 31 HAQELLGDMVFV------DLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKI 104 (128)
T ss_dssp HHHHHHCSEEEE------ECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEE
T ss_pred HHhccCCceEEE------EecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEE
Confidence 445666654431 1239999999999999999999999999999999999974 6777787 887 88887
Q ss_pred cC
Q 023188 285 VP 286 (286)
Q Consensus 285 ep 286 (286)
++
T Consensus 105 ~~ 106 (128)
T 3a7l_A 105 KA 106 (128)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 34
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=98.27 E-value=1.3e-06 Score=80.95 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=62.8
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCe------------------------------------
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL------------------------------------ 252 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~------------------------------------ 252 (286)
...|.++..|++.. ++|++||.|++||+|+.|+...+
T Consensus 57 ~~~v~~~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~ 129 (359)
T 3lnn_A 57 LVKVLPPLAGRIVS-------LNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKR 129 (359)
T ss_dssp EEEECCSSCEEEEE-------CCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCT
T ss_pred EEEEeccCCEEEEE-------EEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 35799999999998 89999999999999999987543
Q ss_pred ----------------------------------------eeeEecCCCeEEEEEEcCCCCccCC-CCeEEEEc
Q 023188 253 ----------------------------------------MNEIEADQSGTIAEILAEDGKSVSV-DTPLLVIV 285 (286)
Q Consensus 253 ----------------------------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~-G~~L~~Ie 285 (286)
...|+||++|+|.++.++.|+.|.. |++|+.|.
T Consensus 130 ~~~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~ 203 (359)
T 3lnn_A 130 DFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVA 203 (359)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEe
Confidence 3579999999999999999999999 99999874
No 35
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=98.18 E-value=2.6e-06 Score=81.57 Aligned_cols=69 Identities=23% Similarity=0.288 Sum_probs=61.5
Q ss_pred CCccCCcceEEEccCCCCCCccc-cCCCEEecCCeEEEEEec--------------------------------------
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFV-KVGDKVQKGQVVCIIEAM-------------------------------------- 250 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~V-kvGd~V~~Gq~L~~IEam-------------------------------------- 250 (286)
..|.++..|++.+ .+| ++||.|++||+|+.|+..
T Consensus 122 ~~v~a~~~G~V~~-------v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~ 194 (413)
T 3ne5_B 122 AIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEAD 194 (413)
T ss_dssp EEECCSSCEEEEE-------ECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHH
T ss_pred EEEecccCEEEEE-------EEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHH
Confidence 4689999999998 788 999999999999999842
Q ss_pred ----------CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 251 ----------KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 251 ----------K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.....|+||.+|+|.++.++.|+.|..|++|+.|.
T Consensus 195 ~~~l~~~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~ 239 (413)
T 3ne5_B 195 IRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 239 (413)
T ss_dssp HHHHHHHTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEE
T ss_pred HHHHHHhccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEe
Confidence 12458999999999999999999999999999874
No 36
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=98.17 E-value=5.4e-07 Score=80.66 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=60.9
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC--------------------------------------
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK-------------------------------------- 251 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK-------------------------------------- 251 (286)
..|.++..|++.. ++|++||.|++||+|+.|+...
T Consensus 23 ~~v~a~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~ 95 (277)
T 2f1m_A 23 AEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYI 95 (277)
T ss_dssp EEECCSSCEEEEE-------ECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTC
T ss_pred EEEEccccEEEEE-------EEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4689999999998 8999999999999999998631
Q ss_pred ---------------------------------eeeeEecCCCeEEEEEEcCCCCccCCC--CeEEEEc
Q 023188 252 ---------------------------------LMNEIEADQSGTIAEILAEDGKSVSVD--TPLLVIV 285 (286)
Q Consensus 252 ---------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G--~~L~~Ie 285 (286)
-...|+||.+|+|..+.++.|+.|..| ++|+.|.
T Consensus 96 s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~ 164 (277)
T 2f1m_A 96 SKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQ 164 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEe
Confidence 124899999999999999999999999 6898874
No 37
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=98.17 E-value=1.9e-06 Score=79.18 Aligned_cols=71 Identities=23% Similarity=0.395 Sum_probs=61.4
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCe-----------------------------------
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL----------------------------------- 252 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~----------------------------------- 252 (286)
....|.++..|++.. ++|++||.|++||+|+.|+....
T Consensus 30 ~~~~v~~~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 102 (341)
T 3fpp_A 30 RKVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQ 102 (341)
T ss_dssp SEEECCCSSCEEEEE-------ECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred EEEEEeccCCcEEEE-------EEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999998 89999999999999999987411
Q ss_pred --------------------------------------------------eeeEecCCCeEEEEEEcCCCCccCCCCe--
Q 023188 253 --------------------------------------------------MNEIEADQSGTIAEILAEDGKSVSVDTP-- 280 (286)
Q Consensus 253 --------------------------------------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~-- 280 (286)
...|+||++|+|.++.++.|+.|..|++
T Consensus 103 ~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~ 182 (341)
T 3fpp_A 103 QRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAP 182 (341)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCC
T ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCc
Confidence 1469999999999999999999999987
Q ss_pred -EEEEc
Q 023188 281 -LLVIV 285 (286)
Q Consensus 281 -L~~Ie 285 (286)
|+.|.
T Consensus 183 ~l~~i~ 188 (341)
T 3fpp_A 183 NILTLA 188 (341)
T ss_dssp CCEEEE
T ss_pred eEEEEe
Confidence 88763
No 38
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=98.07 E-value=3.4e-06 Score=69.79 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=43.3
Q ss_pred cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCC---CCccC---CCC-eEEEEc
Q 023188 233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED---GKSVS---VDT-PLLVIV 285 (286)
Q Consensus 233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~---Gd~V~---~G~-~L~~Ie 285 (286)
++|+.|++||.+|.||++|+..+|.||++|+|+++...- -+.|. ||+ =|++|+
T Consensus 41 ~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~ 100 (125)
T 3klr_A 41 EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMT 100 (125)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEE
T ss_pred CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEE
Confidence 899999999999999999999999999999999996543 33333 554 366654
No 39
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.98 E-value=3e-06 Score=79.54 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=61.2
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCe------------------------------------
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL------------------------------------ 252 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~------------------------------------ 252 (286)
...|.++..|++.. ++|++||.|++||+|+.|+...+
T Consensus 43 ~~~v~a~v~G~V~~-------v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~ 115 (369)
T 1vf7_A 43 IAEVRPQVNGIILK-------RLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYA 115 (369)
T ss_dssp EEEECCSSCEEEEE-------CCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred EEEEEeeCceEEEE-------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 34699999999998 79999999999999999976321
Q ss_pred ---------------------eeeEecCCCeEEEEEEcCCCCccCCC--CeEEEEc
Q 023188 253 ---------------------MNEIEADQSGTIAEILAEDGKSVSVD--TPLLVIV 285 (286)
Q Consensus 253 ---------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~G--~~L~~Ie 285 (286)
...|+||++|+|.++.++.|+.|..| ++|+.|.
T Consensus 116 ~a~~~~~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~ 171 (369)
T 1vf7_A 116 DANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQ 171 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEe
Confidence 25899999999999999999999995 8999874
No 40
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=97.87 E-value=4.4e-05 Score=71.59 Aligned_cols=67 Identities=21% Similarity=0.165 Sum_probs=57.9
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
...|+||..|.|+. +++.||.|++||+|+.|... ....+|+||.+|+|.... ..-.|..|+.|+.|
T Consensus 257 ~~~v~A~~~Gl~~~--------~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l~~I 326 (331)
T 3na6_A 257 DCYLFSEHDGLFEI--------MIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCAAVI 326 (331)
T ss_dssp CCCEECSSCEEEEE--------SSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEEEEE
T ss_pred cEEEeCCCCeEEEE--------cCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEEE
Confidence 35799999998874 79999999999999999984 567899999999997765 45788999999987
Q ss_pred c
Q 023188 285 V 285 (286)
Q Consensus 285 e 285 (286)
.
T Consensus 327 a 327 (331)
T 3na6_A 327 G 327 (331)
T ss_dssp E
T ss_pred e
Confidence 4
No 41
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.79 E-value=2.2e-05 Score=66.40 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=37.8
Q ss_pred cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC
Q 023188 233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK 273 (286)
Q Consensus 233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd 273 (286)
++|+.|++||.+|.||++|...+|.||++|+|+++.-+-.+
T Consensus 63 ~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d 103 (143)
T 3mxu_A 63 QNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE 103 (143)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred CCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence 89999999999999999999999999999999999865443
No 42
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.78 E-value=1.7e-05 Score=66.54 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=35.5
Q ss_pred cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188 233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA 269 (286)
Q Consensus 233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv 269 (286)
++|++|++||.+|.||++|+..+|.||++|+|+++.-
T Consensus 58 ~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~ 94 (137)
T 3tzu_A 58 EVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT 94 (137)
T ss_dssp CTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence 8999999999999999999999999999999999953
No 43
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=97.73 E-value=7.6e-05 Score=70.41 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=57.6
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
...++|+..|.|. +.++.||.|++||+|+.|+.+ ++..+|.|+.+|+|..+. ....|..|+.|+.|
T Consensus 267 ~~~v~A~~~G~~~--------~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~l~~i 336 (354)
T 3cdx_A 267 DAYVMAPRTGLFE--------PTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDAVAVV 336 (354)
T ss_dssp GGEEECSSCEEEE--------ESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCEEEEE
T ss_pred cEEEECCCCEEEE--------EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCEEEEE
Confidence 3468999999655 478999999999999999984 778999999999998765 77889999999987
Q ss_pred c
Q 023188 285 V 285 (286)
Q Consensus 285 e 285 (286)
.
T Consensus 337 a 337 (354)
T 3cdx_A 337 M 337 (354)
T ss_dssp E
T ss_pred e
Confidence 3
No 44
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.66 E-value=3.6e-06 Score=78.01 Aligned_cols=70 Identities=19% Similarity=0.442 Sum_probs=60.2
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCe-----------------------------------
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL----------------------------------- 252 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~----------------------------------- 252 (286)
....|.++..|++.. ++|++||.|++||+|+.|+....
T Consensus 31 ~~~~v~~~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 103 (369)
T 4dk0_A 31 NTVDVGAQVSGKITK-------LYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRL 103 (369)
T ss_dssp SCCCBCCCSCSBCCE-------ECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred eeEEEecCCCcEEEE-------EEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445799999999988 79999999999999999986421
Q ss_pred --------------------------------------------------eeeEecCCCeEEEEEEcCCCCccCCCCe--
Q 023188 253 --------------------------------------------------MNEIEADQSGTIAEILAEDGKSVSVDTP-- 280 (286)
Q Consensus 253 --------------------------------------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~-- 280 (286)
...|+||++|+|.++.++.|+.|..|++
T Consensus 104 ~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~ 183 (369)
T 4dk0_A 104 SKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTP 183 (369)
T ss_dssp HHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCC
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcc
Confidence 1359999999999999999999999998
Q ss_pred -EEEE
Q 023188 281 -LLVI 284 (286)
Q Consensus 281 -L~~I 284 (286)
|+.|
T Consensus 184 ~l~~i 188 (369)
T 4dk0_A 184 TIIKV 188 (369)
T ss_dssp CCBBC
T ss_pred eEEEE
Confidence 6654
No 45
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=97.65 E-value=8.2e-05 Score=70.93 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=57.6
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe------cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA------MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 282 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa------mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~ 282 (286)
...|+||..|.|+. +|+.||.|++||+|+.|-. .....+|+|+.+|+|.... ..-.|..|+.|+
T Consensus 290 ~~~v~A~~~Gl~~~--------~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G~~l~ 359 (368)
T 3fmc_A 290 YRKFHAPKAGMVEY--------LGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQGTELY 359 (368)
T ss_dssp EEEEECSSCEEEEE--------CSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTTCEEE
T ss_pred cEEEecCCCEEEEE--------eCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEE
Confidence 34689999999985 8999999999999999988 4577899999999996665 557899999999
Q ss_pred EE
Q 023188 283 VI 284 (286)
Q Consensus 283 ~I 284 (286)
.|
T Consensus 360 ~i 361 (368)
T 3fmc_A 360 KV 361 (368)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 46
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=4.3e-05 Score=59.59 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=42.2
Q ss_pred CCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 241 GQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 241 Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
|..+|.++.++....|.|+.+|+|.++++++|+.|..||+|++|+
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le 49 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 49 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEE
Confidence 566789999999999999999999999999999999999999986
No 47
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=97.44 E-value=0.00017 Score=61.94 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=55.6
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEEEE------------------
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAEI------------------ 267 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~~I------------------ 267 (286)
..|.||+.|++.. ..++.|.|-. |+.+++... ...|+||++|+|+.+
T Consensus 13 ~~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evL 81 (162)
T 1ax3_A 13 EVFVSPITGEIHP--------ITDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREIL 81 (162)
T ss_dssp SSCCCCCSEEEEE--------GGGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEE
T ss_pred CEEEecCceEEEE--------eEECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEE
Confidence 4699999999997 4677777666 888888776 458899999999988
Q ss_pred -----------------EcCCCCccCCCCeEEEEc
Q 023188 268 -----------------LAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 268 -----------------lve~Gd~V~~G~~L~~Ie 285 (286)
+++.||.|..|++|+++.
T Consensus 82 iHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 82 IHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp EECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred EEECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence 899999999999999874
No 48
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.41 E-value=0.00016 Score=61.93 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=35.7
Q ss_pred cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188 233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA 269 (286)
Q Consensus 233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv 269 (286)
++|+.|++|+.++.||+.|...+|.||++|+|+++.-
T Consensus 68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 8999999999999999999999999999999999874
No 49
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=97.38 E-value=0.00019 Score=61.59 Aligned_cols=65 Identities=28% Similarity=0.410 Sum_probs=55.6
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEEEE------------------
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAEI------------------ 267 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~~I------------------ 267 (286)
..|.||+.|++.. .-++.|.|-. |+.+++...+ ..|+||++|+|..+
T Consensus 13 ~~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evL 81 (161)
T 1f3z_A 13 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELF 81 (161)
T ss_dssp EEEECSSCEEEEE--------GGGSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cEEEecCCeEEEE--------eEECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEE
Confidence 3599999999997 4467777666 8889888775 58899999999998
Q ss_pred -----------------EcCCCCccCCCCeEEEEc
Q 023188 268 -----------------LAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 268 -----------------lve~Gd~V~~G~~L~~Ie 285 (286)
+++.||.|..|++|+++.
T Consensus 82 iHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 82 VHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence 899999999999999874
No 50
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=97.35 E-value=0.00023 Score=60.66 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=55.5
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEEE-------------------
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAE------------------- 266 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~~------------------- 266 (286)
..|.||+.|++.. .-++.|.|-. |+.+++...+ ..|+||++|+|+.
T Consensus 8 ~~i~aP~~G~vv~--------l~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evL 76 (154)
T 2gpr_A 8 LKVLAPCDGTIIT--------LDEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEIL 76 (154)
T ss_dssp EEEECSSSEEEEC--------GGGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEE
T ss_pred CEEEecCCeEEEE--------eeECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEE
Confidence 3589999999997 4577777766 8889988875 6899999999998
Q ss_pred ----------------EEcCCCCccCCCCeEEEEc
Q 023188 267 ----------------ILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 267 ----------------Ilve~Gd~V~~G~~L~~Ie 285 (286)
++|+.||.|..|++|+++.
T Consensus 77 iHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 77 LHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp EECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred EEECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence 4899999999999999874
No 51
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=96.95 E-value=0.0021 Score=59.77 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=55.5
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe----cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA----MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa----mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..++||..|.|.. +++.|+.|++||+|+.|-. ++...+|+|+.+|+|.-.. ..-.|..|+.|+.|.
T Consensus 258 ~~~~a~~~G~~~~--------~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~ia 327 (332)
T 2qj8_A 258 DQLKSPSPGIFEP--------RCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAILA 327 (332)
T ss_dssp GEEECSSSEEEEE--------CSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEEE
T ss_pred eEEeCCCCeEEEE--------eCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEEe
Confidence 3688999998774 7899999999999999965 5678899999999996665 566889999998873
No 52
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.78 E-value=0.0012 Score=47.43 Aligned_cols=31 Identities=6% Similarity=0.283 Sum_probs=29.2
Q ss_pred eEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 255 EIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 255 eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.|.|+.+|+|.++++++|+.|..|++|++|+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~ 31 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILE 31 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEE
Confidence 4789999999999999999999999999986
No 53
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.63 E-value=0.0019 Score=46.30 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=30.2
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|.|+.+|+|.++++++|+.|..|++|++|+
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~ 37 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLE 37 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEe
Confidence 46899999999999999999999999999986
No 54
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=96.52 E-value=0.0023 Score=46.51 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=30.7
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|.|+.+|+|.++++++|+.|..|++|++|+
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~ 40 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLE 40 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEE
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEE
Confidence 357899999999999999999999999999986
No 55
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=96.32 E-value=0.002 Score=48.54 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=30.3
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|.|+.+|+|.++++++|+.|..|++|+.|+
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie 37 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 37 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEE
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence 46999999999999999999999999999986
No 56
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=95.80 E-value=0.0088 Score=43.64 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=30.2
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa 249 (286)
..|+||..|++.+ .++++||.|..|+.|+.|++
T Consensus 45 ~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 45 VKIPSPVRGKIVK-------ILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp EECCCCCCEEEEE-------ECCCTTCEECSCSEEEEEEC
T ss_pred EEEECCCCEEEEE-------EEeCCcCEECCCCEEEEEEC
Confidence 4799999999998 78999999999999999874
No 57
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.76 E-value=0.0095 Score=52.51 Aligned_cols=51 Identities=29% Similarity=0.412 Sum_probs=40.5
Q ss_pred CCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE-----------------------------cCCCCccC
Q 023188 226 PGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL-----------------------------AEDGKSVS 276 (286)
Q Consensus 226 ~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il-----------------------------ve~Gd~V~ 276 (286)
-+...+|+.|+.|++||+||.=. +|.++++|+|.+.. +++|+.|.
T Consensus 19 yGA~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V~ 92 (193)
T 2xha_A 19 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK 92 (193)
T ss_dssp TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEEC
T ss_pred CCCEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEEc
Confidence 35557899999999999999754 88899999886543 67788888
Q ss_pred CCCeEE
Q 023188 277 VDTPLL 282 (286)
Q Consensus 277 ~G~~L~ 282 (286)
.|++|+
T Consensus 93 ~GdvLA 98 (193)
T 2xha_A 93 QGLPLS 98 (193)
T ss_dssp TTSBSS
T ss_pred CCCEEe
Confidence 887764
No 58
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=95.75 E-value=0.0062 Score=47.14 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=30.8
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|.++.+|+|.++++++|+.|..|++|++|+
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie 46 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMI 46 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEE
T ss_pred ceEEecCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence 457899999999999999999999999999986
No 59
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=95.71 E-value=0.01 Score=54.17 Aligned_cols=54 Identities=28% Similarity=0.303 Sum_probs=40.5
Q ss_pred ccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 232 VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
|+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|++|.+
T Consensus 11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 64 (341)
T 3fpp_A 11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 64 (341)
T ss_dssp --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECC
T ss_pred EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEECh
Confidence 3444433333445667765 35689999999999999999999999999999864
No 60
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=95.69 E-value=0.006 Score=46.86 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=30.7
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|.|+.+|+|.++++++|+.|..||+|++|+
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie 57 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIE 57 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEE
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEe
Confidence 456899999999999999999999999999986
No 61
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=95.67 E-value=0.0068 Score=55.73 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=44.2
Q ss_pred ccCCCEEecCCeEEEEEec-CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 232 VKVGDKVQKGQVVCIIEAM-KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 232 VkvGd~V~~Gq~L~~IEam-K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
|+.|+.-..-..-+.|++. .-...|.++.+|+|.++++++|+.|..|++|++|.+
T Consensus 35 v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~ 90 (359)
T 3lnn_A 35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDS 90 (359)
T ss_dssp CEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEEC
T ss_pred eeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEECh
Confidence 3444444444566788875 567899999999999999999999999999999863
No 62
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=95.35 E-value=0.0086 Score=43.99 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=29.8
Q ss_pred eeEecCCCeEEEEE-------EcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEI-------LAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~I-------lve~Gd~V~~G~~L~~Ie 285 (286)
..|.|+..|+|.++ +++.|+.|..|++|++|+
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie 43 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVE 43 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEE
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEE
Confidence 46899999999998 999999999999999986
No 63
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=95.29 E-value=0.01 Score=43.50 Aligned_cols=34 Identities=35% Similarity=0.562 Sum_probs=31.1
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa 249 (286)
...|+||+.|++.+ .++++||.|..|+.|+.|+.
T Consensus 43 ~~~i~Ap~~G~v~~-------~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 43 SMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEBSSCEEEEE-------CCCCTTCEECTTCCCEEEES
T ss_pred eEEEeCCCCEEEEE-------EecCCCCEECCCCEEEEEEc
Confidence 45799999999998 78999999999999999975
No 64
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=95.05 E-value=0.02 Score=42.01 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=30.7
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam 250 (286)
..|+||+.|++.. .++++|+.|..|+.|+.|+..
T Consensus 42 ~~i~Ap~~G~v~~-------~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 42 MEVPSPKAGVVKS-------VSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEECSSSSEEEE-------ESCCTTCEEETTSEEEEEECC
T ss_pred EEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEecC
Confidence 4799999999998 789999999999999998753
No 65
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=94.92 E-value=0.016 Score=54.09 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=36.1
Q ss_pred eEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 243 VVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 243 ~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
..+.|+.. -...|.++.+|+|.++++++|+.|..|++|++|.+
T Consensus 34 ~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~ 76 (369)
T 1vf7_A 34 LPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 76 (369)
T ss_dssp EEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 34556654 35679999999999999999999999999999864
No 66
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=94.89 E-value=0.024 Score=53.97 Aligned_cols=50 Identities=28% Similarity=0.370 Sum_probs=40.2
Q ss_pred CCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE-----------------------------cCCCCccCC
Q 023188 227 GEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL-----------------------------AEDGKSVSV 277 (286)
Q Consensus 227 ~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il-----------------------------ve~Gd~V~~ 277 (286)
+...+|+.|+.|++||+||.=. +|.++++|+|.+.. +++|+.|..
T Consensus 60 ga~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~ 133 (352)
T 2xhc_A 60 KAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQ 133 (352)
T ss_dssp TCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECT
T ss_pred CCEEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEcc
Confidence 4446799999999999999865 88888888876533 778888888
Q ss_pred CCeEE
Q 023188 278 DTPLL 282 (286)
Q Consensus 278 G~~L~ 282 (286)
|++|+
T Consensus 134 G~vla 138 (352)
T 2xhc_A 134 GLPLS 138 (352)
T ss_dssp TCBSB
T ss_pred CcEEe
Confidence 88775
No 67
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=94.79 E-value=0.02 Score=41.94 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=30.6
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa 249 (286)
...|+||..|++.+ .++++||.|..|+.|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 44 VMEVLAEADGVIAE-------IVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEEECSSCEEEEE-------ESSCTTCEECTTCEEEEECC
T ss_pred eEEEEcCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence 35799999999998 79999999999999999864
No 68
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=94.64 E-value=0.037 Score=41.57 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 260 QSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 260 ~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+|.+++++.||.|..|++|+.|+
T Consensus 18 ~~G~v~~~~v~~Gd~V~~G~~l~~ie 43 (87)
T 3crk_C 18 TMGTVQRWEKKVGEKLSEGDLLAEIE 43 (87)
T ss_dssp CEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred CcEEEEEEEcCCCCEEcCCCEEEEEE
Confidence 57999999999999999999999986
No 69
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=94.61 E-value=0.033 Score=42.66 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 260 QSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 260 ~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+|.++++++||.|..|++|++|+
T Consensus 17 ~~G~v~~~~v~~Gd~V~~G~~l~~ie 42 (93)
T 1k8m_A 17 REVTVKEWYVKEGDTVSQFDSICEVQ 42 (93)
T ss_dssp CCEEEEEECCCTTCEECSSSCCEEEE
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEE
Confidence 58999999999999999999999986
No 70
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=94.49 E-value=0.028 Score=44.51 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=24.6
Q ss_pred CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 260 QSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 260 ~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+|.+++++.||.|..||+|++|+
T Consensus 20 ~~G~v~~~~v~~Gd~V~~G~~L~~iE 45 (108)
T 2dne_A 20 QAGTIARWEKKEGDKINEGDLIAEVE 45 (108)
T ss_dssp CEEEEEECSSCTTCEECTTSEEEEEE
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEEE
Confidence 47999999999999999999999986
No 71
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=94.35 E-value=0.016 Score=53.31 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=42.3
Q ss_pred ccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 232 VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
|+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|++|.+
T Consensus 12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~ 65 (369)
T 4dk0_A 12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS 65 (369)
T ss_dssp CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCC
T ss_pred EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcC
Confidence 4444444444556677764 35589999999999999999999999999999863
No 72
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=94.28 E-value=0.031 Score=41.03 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=27.2
Q ss_pred EecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 256 IEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 256 I~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+-++..|+|.+++++.||.|..||+|+.|+
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie 39 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLE 39 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEE
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence 345789999999999999999999999986
No 73
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=94.07 E-value=0.017 Score=43.25 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=32.0
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam 250 (286)
....|+||+.|++.+ .++++||.|..|++|+.|+..
T Consensus 38 ~~~~i~Ap~~G~V~~-------~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 38 ASMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp SEEEEECSSCBCCCE-------ECSCTTCCBCTTSEEEEEECC
T ss_pred cEEEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEEcC
Confidence 345799999999988 799999999999999999864
No 74
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=93.99 E-value=0.02 Score=42.27 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=30.5
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa 249 (286)
...|+||..|++.+ .++++||.|..|+.|+.|+.
T Consensus 45 ~~~i~Ap~~G~v~~-------~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 45 VLEVPASADGILDA-------VLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCCCBCCSBCCCCB-------CTTCTTCEECSSSEEEBCCC
T ss_pred EEEEECCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence 45799999999998 79999999999999998864
No 75
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=93.95 E-value=0.051 Score=51.68 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=43.1
Q ss_pred ccCCCEEecCCeEEEEEec-CeeeeEecCCCeEEEEEEc-CCCCccCCCCeEEEEc
Q 023188 232 VKVGDKVQKGQVVCIIEAM-KLMNEIEADQSGTIAEILA-EDGKSVSVDTPLLVIV 285 (286)
Q Consensus 232 VkvGd~V~~Gq~L~~IEam-K~~~eI~Ap~sGvV~~Ilv-e~Gd~V~~G~~L~~Ie 285 (286)
|+.|+.-..=...+.|+.+ .-...|.++.+|+|.++++ ++||.|..||+|++|.
T Consensus 99 v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld 154 (413)
T 3ne5_B 99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT 154 (413)
T ss_dssp CEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEE
T ss_pred EEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEc
Confidence 4445544555566777753 4568899999999999998 9999999999999986
No 76
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=93.94 E-value=0.026 Score=47.85 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=46.6
Q ss_pred CCccCCcceEEEccCC----------CCC------------------CccccCCCEEecCCeEEEEEecC---------e
Q 023188 210 PPLKCPMAGTFYRCPA----------PGE------------------PAFVKVGDKVQKGQVVCIIEAMK---------L 252 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~----------~~~------------------~~~VkvGd~V~~Gq~L~~IEamK---------~ 252 (286)
..|+||..|++....+ -+. ..+|++||+|++||.|+.+.-.. .
T Consensus 45 ~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t 124 (154)
T 2gpr_A 45 NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKS 124 (154)
T ss_dssp SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCE
T ss_pred CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeE
Confidence 4899999999876421 011 15899999999999999886421 1
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..-|.- ..+..+....+..|..|+.|+.++
T Consensus 125 ~vvvtn---~~~~~~~~~~~~~v~~g~~~~~~~ 154 (154)
T 2gpr_A 125 PIIFTN---NGGKTLEIVKMGEVKQGDVVAILK 154 (154)
T ss_dssp EEEEEE---CSSCCCSCBCCEEECTTCEEEEEC
T ss_pred EEEEEC---CCcceEEEccCceEcCCCEEEEeC
Confidence 122222 112223334456788899998764
No 77
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.79 E-value=0.043 Score=42.53 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=24.6
Q ss_pred CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 260 QSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 260 ~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+|.++++++||.|..||+|++|+
T Consensus 20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie 45 (98)
T 2dnc_A 20 EEGNIVKWLKKEGEAVSAGDALCEIE 45 (98)
T ss_dssp SEECEEEESSCTTCEECTTSEEEEEE
T ss_pred ccEEEEEEEcCCCCEeCCCCEEEEEE
Confidence 47999999999999999999999986
No 78
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=93.37 E-value=0.095 Score=45.21 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=37.4
Q ss_pred ccccCCCEEecCCeEEEEEecCee-eeEecCCCeEEEEEEcCCC
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKLM-NEIEADQSGTIAEILAEDG 272 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~~-~eI~Ap~sGvV~~Ilve~G 272 (286)
+.+.+|+.|.+||.|+.|.|.|-. .-|+||++|+|.-+.--.+
T Consensus 114 ~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~ 157 (169)
T 3d4r_A 114 PIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS 157 (169)
T ss_dssp ECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred EEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence 689999999999999999999976 5799999999987764433
No 79
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=93.16 E-value=0.088 Score=43.16 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 260 QSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 260 ~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+|.+++++.||.|..||+|++|+
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iE 65 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIE 65 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEE
Confidence 46999999999999999999999986
No 80
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=93.06 E-value=0.11 Score=45.29 Aligned_cols=65 Identities=25% Similarity=0.365 Sum_probs=46.2
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEe----cCCeEEEEEecCeeeeEecCCCeEEEE-------------------
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQ----KGQVVCIIEAMKLMNEIEADQSGTIAE------------------- 266 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~----~Gq~L~~IEamK~~~eI~Ap~sGvV~~------------------- 266 (286)
..|.||+.|.+.. +-++-|.|= =|+-++++-+. ..|.||++|+|..
T Consensus 35 ~~i~aPv~G~vi~--------L~eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~EvL 103 (183)
T 3our_B 35 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGVELF 103 (183)
T ss_dssp EEEECSSCEEEEE--------GGGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eEEEeecceEEEE--------chhCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCCEEE
Confidence 4699999999986 344455442 27777776543 3788888887765
Q ss_pred ----------------EEcCCCCccCCCCeEEEEc
Q 023188 267 ----------------ILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 267 ----------------Ilve~Gd~V~~G~~L~~Ie 285 (286)
.+|++||.|..||+|+++.
T Consensus 104 IHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 104 VHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEecccccccCCccceEEEeCcCEEcCCCEEEEEC
Confidence 3566777799999998863
No 81
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=92.97 E-value=0.04 Score=48.51 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=40.6
Q ss_pred CCCcc--ccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEE--------------------------E--EcCCCCccC
Q 023188 227 GEPAF--VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAE--------------------------I--LAEDGKSVS 276 (286)
Q Consensus 227 ~~~~~--VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~--------------------------I--lve~Gd~V~ 276 (286)
+.-.. |+.|++|+.||+|+ -...|.|+.+|+|.- + +|.+||.|.
T Consensus 78 gA~l~~~V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~ 151 (193)
T 2xha_A 78 SAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVK 151 (193)
T ss_dssp GGCCCTTCCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEEC
T ss_pred CCEEEEEcCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEEC
Confidence 44466 89999999999998 345677888888741 3 899999999
Q ss_pred CCCeEE
Q 023188 277 VDTPLL 282 (286)
Q Consensus 277 ~G~~L~ 282 (286)
.|+.|.
T Consensus 152 ~Ge~L~ 157 (193)
T 2xha_A 152 QGEMLA 157 (193)
T ss_dssp TTCEEE
T ss_pred CCCCcc
Confidence 999986
No 82
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=92.86 E-value=0.12 Score=45.01 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=40.1
Q ss_pred CCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCcc
Q 023188 226 PGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSV 275 (286)
Q Consensus 226 ~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V 275 (286)
.+...+|+.|+.|++||+||.. ++-..+|.++++|+|.=-.+.+|..+
T Consensus 60 yGa~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~ 107 (190)
T 2auk_A 60 YGAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI 107 (190)
T ss_dssp TTCEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTE
T ss_pred CCCEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcce
Confidence 4556789999999999999965 68899999999999977777776543
No 83
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=92.79 E-value=0.058 Score=46.09 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=45.6
Q ss_pred CCCccCCcceEEEccCCC----------CC------------------CccccCCCEEecCCeEEEEEecC-------ee
Q 023188 209 HPPLKCPMAGTFYRCPAP----------GE------------------PAFVKVGDKVQKGQVVCIIEAMK-------LM 253 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~----------~~------------------~~~VkvGd~V~~Gq~L~~IEamK-------~~ 253 (286)
...|+||..|++....+- +. ..+|++||+|++||.|+.+.-.. ..
T Consensus 49 ~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~ 128 (162)
T 1ax3_A 49 EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLM 128 (162)
T ss_dssp SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECHHHHGGGSSCCC
T ss_pred CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEECHHHHHhcCCCCE
Confidence 347999999998764221 11 14899999999999999886422 22
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCC-eEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDT-PLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~-~L~~Ie 285 (286)
..|.-.-......+....+..|..|+ .|+.+.
T Consensus 129 t~vvvtn~~~~~~~~~~~~~~v~~g~~~i~~~~ 161 (162)
T 1ax3_A 129 TPIVFTNLAEGETVSIKASGSVNREQEDIVKIE 161 (162)
T ss_dssp EEEEESSGGGTCEEEECCCSEECTTCSSSEEEE
T ss_pred EEEEEECCcccceEEeccCceEecCCEEEEEEe
Confidence 23322211112233333445577777 566553
No 84
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=91.69 E-value=0.17 Score=43.21 Aligned_cols=75 Identities=23% Similarity=0.354 Sum_probs=44.1
Q ss_pred CCccCCcceEEEccCCC----------CC------------------CccccCCCEEecCCeEEEEEecC-------eee
Q 023188 210 PPLKCPMAGTFYRCPAP----------GE------------------PAFVKVGDKVQKGQVVCIIEAMK-------LMN 254 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~----------~~------------------~~~VkvGd~V~~Gq~L~~IEamK-------~~~ 254 (286)
..|+||..|++....+- +. ..+|++||+|++||.|+.+.-.. +..
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t 129 (161)
T 1f3z_A 50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLT 129 (161)
T ss_dssp SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCE
T ss_pred CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEECHHHHHhcCCCCeE
Confidence 47999999998754210 11 13899999999999999886421 223
Q ss_pred eEecCCCeEEEEEEcCCCCccCCC-CeEEEEc
Q 023188 255 EIEADQSGTIAEILAEDGKSVSVD-TPLLVIV 285 (286)
Q Consensus 255 eI~Ap~sGvV~~Ilve~Gd~V~~G-~~L~~Ie 285 (286)
.|.-.-...+..+....| .|..| +.|+.+.
T Consensus 130 ~vvvtn~~~~~~~~~~~~-~v~~~~~~~~~~~ 160 (161)
T 1f3z_A 130 PVVISNMDEIKELIKLSG-SVTVGETPVIRIK 160 (161)
T ss_dssp EEEESCGGGCSEEEECCS-EECTTTSEEEEEE
T ss_pred EEEEECCcccceEEeccc-eEeeCCcEEEEEE
Confidence 333222222222322234 46555 4787764
No 85
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=91.37 E-value=0.21 Score=46.91 Aligned_cols=62 Identities=8% Similarity=-0.014 Sum_probs=46.8
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
.|+++..|.+...+ ..++.|+.|++||+|+.+-. .+|.++++|++.- .. .-.|..|+.++.|
T Consensus 265 ~v~a~~~g~~~~~~-----~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~--~p-~p~V~~G~~~~~i 326 (350)
T 2bco_A 265 TIVRLHDDFDFMFD-----DNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIV--FP-NRHVAIGQRAALM 326 (350)
T ss_dssp EEECCSSSEEESSC-----TTCCBTEECCTTCEEEEETT----EEEECSSSSCEEE--SC-CTTCCTTSEEEEE
T ss_pred EEEcCCCCeEEecc-----ccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEE--ec-CCCCCCCcEEEEE
Confidence 46778777665211 35799999999999999843 7899999998744 33 5788889977765
No 86
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=91.28 E-value=0.12 Score=40.31 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=30.8
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecC-CeEEEEEec
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKG-QVVCIIEAM 250 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~G-q~L~~IEam 250 (286)
...|+||+.|++.. .++++|+.|..| +.|+.|...
T Consensus 67 ~~~i~AP~~G~V~~-------~~~~~G~~v~~g~~~l~~i~~~ 102 (116)
T 2k32_A 67 HTEIKAPFDGTIGD-------ALVNIGDYVSASTTELVRVTNL 102 (116)
T ss_dssp EEEEECSSSEEECC-------CSCCTTCEECTTTSCCEEEECS
T ss_pred CCEEEcCCCEEEEE-------EECCCCCEEcCCCcEEEEEECC
Confidence 35799999999998 689999999999 999988664
No 87
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=91.24 E-value=0.15 Score=51.98 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=30.9
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|.||..|+|.+++|++||.|+.||+|+.||
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 644 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIE 644 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEE
Confidence 457999999999999999999999999999986
No 88
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=90.01 E-value=0.3 Score=42.65 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=18.3
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
++|++||+|++||.|+.+.-
T Consensus 120 ~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 120 RIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp ECSCTTCEECTTCEEEEECH
T ss_pred EEEeCcCEEcCCCEEEEECH
Confidence 88999999999999998854
No 89
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=88.22 E-value=0.36 Score=53.07 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=30.9
Q ss_pred CCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEE
Q 023188 227 GEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIA 265 (286)
Q Consensus 227 ~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~ 265 (286)
+...+|+.||.|++||+||.. +.-..+|.++++|+|.
T Consensus 1000 gs~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1000 GAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp TCEESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred CCEEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence 344789999999999999976 5677889999999874
No 90
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=88.03 E-value=0.29 Score=50.51 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=30.4
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|.||..|+|.+++|++||.|..||+|+.|+
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iE 681 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLS 681 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEE
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEe
Confidence 46999999999999999999999999999986
No 91
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=87.31 E-value=0.41 Score=51.83 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=30.5
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|.||..|+|.+++|++||.|..||+|+.|+
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ie 1109 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITE 1109 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred ceeecCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence 57999999999999999999999999999986
No 92
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=86.83 E-value=0.45 Score=51.92 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=30.2
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|.||..|+|.+++|++||.|+.||+|+.||
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 1199 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIE 1199 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTCEECSSCEEEEEE
T ss_pred cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence 46999999999999999999999999999986
No 93
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=86.52 E-value=0.16 Score=48.27 Aligned_cols=50 Identities=24% Similarity=0.258 Sum_probs=34.8
Q ss_pred CCCcc--ccCCCEEecCCeEEEEEecCeeeeEecCCCeEEE------------------E----------EEcCCCCccC
Q 023188 227 GEPAF--VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIA------------------E----------ILAEDGKSVS 276 (286)
Q Consensus 227 ~~~~~--VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~------------------~----------Ilve~Gd~V~ 276 (286)
++-.. |+.|+.|+.||+|+ -...|.|+.+|+|. + ++|.+||.|.
T Consensus 118 ga~l~~~v~~g~~v~~G~vla------k~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V~ 191 (352)
T 2xhc_A 118 SAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVK 191 (352)
T ss_dssp GGCBCTTCCTTCEECTTCBSB------SSSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEEC
T ss_pred CcEEEEecCCCCEEccCcEEe------cCceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEEe
Confidence 44456 99999999999887 22344455555543 2 2367888899
Q ss_pred CCCeEE
Q 023188 277 VDTPLL 282 (286)
Q Consensus 277 ~G~~L~ 282 (286)
.|+.|.
T Consensus 192 ~G~~l~ 197 (352)
T 2xhc_A 192 QGEMLA 197 (352)
T ss_dssp TTCEEE
T ss_pred CCCCcc
Confidence 999886
No 94
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=85.93 E-value=0.68 Score=40.74 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=29.4
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecC--CeEEEEEe
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKG--QVVCIIEA 249 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~G--q~L~~IEa 249 (286)
...|+||+.|++.. .++++|+.|..| +.|+.|..
T Consensus 130 ~~~I~AP~~G~V~~-------~~~~~G~~v~~g~~~~l~~i~~ 165 (277)
T 2f1m_A 130 YTKVTSPISGRIGK-------SNVTEGALVQNGQATALATVQQ 165 (277)
T ss_dssp TTEECCSSCEEECC-------CSSCBTCEECTTCSSCSEEEEE
T ss_pred cCEEECCCCeEEEe-------EEcCCCCEEcCCCCceeEEEec
Confidence 35899999999998 789999999999 58887754
No 95
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=85.81 E-value=0.15 Score=51.92 Aligned_cols=32 Identities=28% Similarity=0.533 Sum_probs=0.0
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|.||..|+|.+++|++||.|+.||+|+.||
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 634 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLE 634 (675)
T ss_dssp --------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCCEEcCCCEEEEEE
Confidence 46899999999999999999999999999886
No 96
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=84.08 E-value=0.69 Score=50.11 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=11.6
Q ss_pred EecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 256 IEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 256 I~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
|.||..|+|.++++++||.|..||+|+.|
T Consensus 1098 v~ap~~G~v~~~~v~~Gd~V~~G~~l~~i 1126 (1165)
T 2qf7_A 1098 VGAPMPGVISRVFVSSGQAVNAGDVLVSI 1126 (1165)
T ss_dssp EECSSCEEEEEECCSSCCCC---CEEEEE
T ss_pred eeCCCCeEEEEEEcCCcCEeCCCCEEEEE
Confidence 44444444444444444444444444443
No 97
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=80.07 E-value=0.35 Score=46.84 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=0.0
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 251 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK 251 (286)
..|.||..|++.+ ++|++||.|..||+|++|+...
T Consensus 46 ~~i~ap~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 46 VEIPSPVKGKVLE-------ILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp ------------------------------------------
T ss_pred EEEecCCCeEEEE-------EEeCCCCEeCCCCEEEEEecCC
Confidence 4799999999998 8999999999999999998643
No 98
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=77.37 E-value=0.47 Score=42.31 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=0.0
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCE-EecCCeEEEEEe
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDK-VQKGQVVCIIEA 249 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~-V~~Gq~L~~IEa 249 (286)
..|.||..|++.+ .+|++||. |..|++|++|+.
T Consensus 47 ~ei~Ap~~G~v~~-------i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 47 VTLDASDDGILAK-------IVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp -----------------------------------------
T ss_pred eEEecCCCeEEEE-------EEecCCCeeecCCCEEEEEec
Confidence 4799999999998 79999997 999999999974
No 99
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=69.69 E-value=3.8 Score=38.62 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=29.1
Q ss_pred eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 252 LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 252 ~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
-..-|+|+.+|.+ +.+++.|+.|+.||+|++|.
T Consensus 289 ~~~~v~A~~~Gl~-~~~v~lGd~V~kG~~la~I~ 321 (368)
T 3fmc_A 289 NYRKFHAPKAGMV-EYLGKVGVPMKATDPLVNLL 321 (368)
T ss_dssp GEEEEECSSCEEE-EECSCTTCCBCTTCEEEEEE
T ss_pred CcEEEecCCCEEE-EEeCCCCCEeCCCCEEEEEE
Confidence 3556899999988 58999999999999999985
No 100
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=63.70 E-value=5.4 Score=36.87 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=28.7
Q ss_pred CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 251 KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 251 K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.-..-|+|+.+|.+ +-+++.|+.|+.||+|++|.
T Consensus 255 ~~~~~v~A~~~Gl~-~~~v~~Gd~V~~G~~la~I~ 288 (331)
T 3na6_A 255 DGDCYLFSEHDGLF-EIMIDLGEPVQEGDLVARVW 288 (331)
T ss_dssp CSCCCEECSSCEEE-EESSCTTCEECTTCEEEEEE
T ss_pred CCcEEEeCCCCeEE-EEcCCCCCEEcCCCEEEEEE
Confidence 33556899999977 55899999999999999975
No 101
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=60.30 E-value=3.7 Score=45.35 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=18.6
Q ss_pred CCCCccccCCCEEecCCeEEEE
Q 023188 226 PGEPAFVKVGDKVQKGQVVCII 247 (286)
Q Consensus 226 ~~~~~~VkvGd~V~~Gq~L~~I 247 (286)
.+.-..|+.|+.|+.||+|+.|
T Consensus 1103 ~~a~~~v~~g~~v~~g~vlaki 1124 (1407)
T 3lu0_D 1103 GKAIVQLEDGVQISSGDTLARI 1124 (1407)
T ss_dssp TTCCCCCCSSCEECTTCEEECC
T ss_pred CCcEEEecCCCEeccCceEEec
Confidence 4555789999999999999866
No 102
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=59.72 E-value=9.4 Score=35.43 Aligned_cols=34 Identities=18% Similarity=0.014 Sum_probs=28.6
Q ss_pred CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 251 KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 251 K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+-..-++|+.+|. .+..++.|+.|+.|++|+.|.
T Consensus 265 ~~~~~v~A~~~G~-~~~~~~~g~~V~~G~~La~i~ 298 (354)
T 3cdx_A 265 EADAYVMAPRTGL-FEPTHYVGEEVRTGETAGWIH 298 (354)
T ss_dssp CGGGEEECSSCEE-EEESCCTTCEECTTSEEEEEE
T ss_pred CCcEEEECCCCEE-EEEeCCCCCEeCCCCEEEEEE
Confidence 4456689999995 477789999999999999875
No 103
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=57.82 E-value=11 Score=32.05 Aligned_cols=13 Identities=23% Similarity=0.122 Sum_probs=10.1
Q ss_pred CCccCCcceEEEc
Q 023188 210 PPLKCPMAGTFYR 222 (286)
Q Consensus 210 ~~I~AP~~G~~~~ 222 (286)
..|+|+..|++..
T Consensus 49 tpV~A~~~G~V~~ 61 (182)
T 3it5_A 49 YSVVAAHAGTVRV 61 (182)
T ss_dssp CEEECSSSEEEEE
T ss_pred CEEEeccCEEEEE
Confidence 4688888888765
No 104
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=56.72 E-value=12 Score=36.93 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=32.0
Q ss_pred EEecCeeeeEecCCCeEE-----------------------------EEEEcCCCCccCCCCeEEEEc
Q 023188 247 IEAMKLMNEIEADQSGTI-----------------------------AEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 247 IEamK~~~eI~Ap~sGvV-----------------------------~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+..-+...+|.|+.+|.| ..++++.||.|+.|++|++|.
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~ 433 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVH 433 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEE
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEE
Confidence 445667788889999888 457788999999999999984
No 105
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=55.69 E-value=20 Score=30.76 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=37.6
Q ss_pred CccCCcceEEEccCCCCCCccc--cCCCEEe--cCCeEEEEEe-cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFV--KVGDKVQ--KGQVVCIIEA-MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~V--kvGd~V~--~Gq~L~~IEa-mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.|.|+..|++... .. -.| ..|+.|- ..-.|.++.. .+-.....-|+.- .+++++|+.|..|+.|++..
T Consensus 10 ~i~a~~~G~V~f~-nl---~~v~~~~G~~vv~~r~g~i~I~d~~g~e~~~~~ipyGa---~L~V~dG~~V~~G~~laewD 82 (190)
T 2auk_A 10 SIQVKNKGSIKLS-NV---KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGA---VLAKGDGEQVAGGETVANWD 82 (190)
T ss_dssp EEECCSSEEEEEE-SC---CEEECTTSCEEECCSSCEEEEECTTSCEEEEEECCTTC---EESSCTTCEECTTCEEEECC
T ss_pred eEEcccCeEEEEc-cc---EEEECCCCCEEEEccccEEEEEcCCCcEEEEEEcCCCC---EEEecCCCEEcCCCEEEEEc
Confidence 6899999987541 11 112 2343331 1112222221 1111223344443 57899999999999999865
Q ss_pred C
Q 023188 286 P 286 (286)
Q Consensus 286 p 286 (286)
|
T Consensus 83 p 83 (190)
T 2auk_A 83 P 83 (190)
T ss_dssp S
T ss_pred C
Confidence 4
No 106
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=54.51 E-value=6.8 Score=33.49 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=18.3
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
..|++||.|++||+|+.+-.
T Consensus 85 i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 85 IQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp CCCCTTCEECTTCEEEEECS
T ss_pred cccCCCCEEcCCCEEEeecC
Confidence 67999999999999999874
No 107
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=54.15 E-value=9.3 Score=32.84 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=31.7
Q ss_pred CCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 234 VGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 234 vGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.|-.+++|+.||.+++ .|..+-+.+..|+.|..|+.|+.|.
T Consensus 92 ~~~~lkkGt~L~lvpa-----------eG~~V~~i~~~G~rV~kgd~lA~i~ 132 (169)
T 3d4r_A 92 TLTYLKAGTKLISVPA-----------EGYKVYPIMDFGFRVLKGYRLATLE 132 (169)
T ss_dssp EEEEECTTCBCEEEEE-----------CSSEEEECCCCSEEECTTCEEEEEE
T ss_pred EEEEEcCCCEEEEEEe-----------CceEEEEEcCcCcEeccCCeEEEEE
Confidence 3445678888888876 4556677788999999999999873
No 108
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=53.77 E-value=6.6 Score=36.70 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=12.1
Q ss_pred ccccCCCEEecCCeEEEEE
Q 023188 230 AFVKVGDKVQKGQVVCIIE 248 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IE 248 (286)
..|++||.|++||+|+.+-
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G 302 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAG 302 (361)
T ss_dssp ECCCTTCEECTTCEEEECC
T ss_pred cccCCcCEECCCCEEEEEC
Confidence 3466666666666666654
No 109
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=50.28 E-value=16 Score=35.40 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=29.0
Q ss_pred EecCeeeeEecCCCeEEE-------------------------------EEEcCCCCccCCCCeEEEEc
Q 023188 248 EAMKLMNEIEADQSGTIA-------------------------------EILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 248 EamK~~~eI~Ap~sGvV~-------------------------------~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..-+...+|.|+.+|.|. .++.+.||.|+.|++|++|.
T Consensus 330 ~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~ 398 (433)
T 1brw_A 330 PKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIH 398 (433)
T ss_dssp CCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEE
T ss_pred CCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEE
Confidence 344566677777777774 46778899999999999984
No 110
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=50.01 E-value=2.6 Score=39.20 Aligned_cols=36 Identities=11% Similarity=-0.056 Sum_probs=26.0
Q ss_pred ccccCCCEEecCCeEEEEEec-----CeeeeEecCCCeEEE
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM-----KLMNEIEADQSGTIA 265 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam-----K~~~eI~Ap~sGvV~ 265 (286)
..++.|+.|++||+|+.+-.. ....+|.+|.+|+|.
T Consensus 277 ~~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~ 317 (341)
T 1yw4_A 277 DSVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKP 317 (341)
T ss_dssp TTCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCS
T ss_pred ecCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCcee
Confidence 467999999999999987553 345579999999873
No 111
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=49.39 E-value=24 Score=35.76 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=30.8
Q ss_pred cccCCCEEecCCeEEEEEecCe-eeeEe--cCCCeEEEEEEcCCCC
Q 023188 231 FVKVGDKVQKGQVVCIIEAMKL-MNEIE--ADQSGTIAEILAEDGK 273 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IEamK~-~~eI~--Ap~sGvV~~Ilve~Gd 273 (286)
.+++||.|..||+++.+.-... .+.|. ....|+|+.| ..|+
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g~ 173 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESGS 173 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCCc
Confidence 4899999999999999865443 35553 3368999988 5665
No 112
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=47.79 E-value=17 Score=35.30 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=17.2
Q ss_pred EEEcCCCCccCCCCeEEEEc
Q 023188 266 EILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 266 ~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.++.+.||.|+.|++|++|.
T Consensus 371 ~~~~k~g~~v~~g~~l~~i~ 390 (423)
T 2dsj_A 371 YLLKKPGDRVERGEALALVY 390 (423)
T ss_dssp EESCCTTCEECTTSEEEEEE
T ss_pred eeeccCCCEeCCCCeEEEEE
Confidence 46778899999999999984
No 113
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=46.13 E-value=7.8 Score=37.71 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.5
Q ss_pred ccccCCCEEecCCeEEEEEecC
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMK 251 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK 251 (286)
.+++.||.|++||+|+.|=+..
T Consensus 385 ~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 385 DMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp SCCCTTCEEBTTBCSEEEEESS
T ss_pred EeccCCCEECCCCeEEEEecCC
Confidence 7899999999999999997653
No 114
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=44.91 E-value=13 Score=30.58 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.8
Q ss_pred eeEecCCCeEEEEEEc-CCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILA-EDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilv-e~Gd~V~~G~~L~~Ie 285 (286)
..+.++.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 37 t~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VE 69 (136)
T 1zko_A 37 TNHAQEQLGDVVYVDLPEVGREVKKGEVVASIE 69 (136)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEE
T ss_pred EhhhcccCCCcEEEEecCCCCEEeCCCEEEEEE
Confidence 4456677788888887 9999999999999986
No 115
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=43.92 E-value=26 Score=31.36 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=11.9
Q ss_pred EEEcCCCCccCCCCeEEEE
Q 023188 266 EILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 266 ~Ilve~Gd~V~~G~~L~~I 284 (286)
++.|+.|+.|..|+.|..+
T Consensus 134 ~i~Vk~Gd~V~~Gq~IG~v 152 (245)
T 3tuf_B 134 EVSVEQGDKVKQNQVIGKS 152 (245)
T ss_dssp EESCCTTCEECTTCEEEEC
T ss_pred ccccCCCCEECCCCEEEEe
Confidence 4556666666666666554
No 116
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=42.99 E-value=13 Score=30.22 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=27.2
Q ss_pred eeEecCCCeEEEEEEc-CCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILA-EDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilv-e~Gd~V~~G~~L~~Ie 285 (286)
.++..+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 28 td~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vE 60 (131)
T 1hpc_A 28 TDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVE 60 (131)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECBTSEEEEEE
T ss_pred ehhhcccCCCceEEEecCCCCEEeCCCEEEEEE
Confidence 4456677788989988 9999999999999986
No 117
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=42.20 E-value=15 Score=35.82 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=29.8
Q ss_pred EEecCeeeeEecCCCeEEE-------------------------------EEEcCCCCccCCCCeEEEEc
Q 023188 247 IEAMKLMNEIEADQSGTIA-------------------------------EILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 247 IEamK~~~eI~Ap~sGvV~-------------------------------~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+..-+...+|.|+.+|.|. .++.+.||.|+.|++|++|.
T Consensus 334 ~~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~ 403 (440)
T 2tpt_A 334 LPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIH 403 (440)
T ss_dssp SCCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEE
T ss_pred CCCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEe
Confidence 3345666778888888774 35677899999999999984
No 118
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=42.00 E-value=10 Score=35.06 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.2
Q ss_pred CccccCCCEEecCCeEEEEEe
Q 023188 229 PAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 229 ~~~VkvGd~V~~Gq~L~~IEa 249 (286)
...|++||.|++||+|+.+-.
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred cccCCCcCEECCCCEEEeecC
Confidence 357999999999999998754
No 119
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=41.94 E-value=11 Score=33.82 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=18.7
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
+.|++||.|++||+|+.+-..
T Consensus 135 i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 135 VSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp ESCCTTCEECTTCEEEECBCC
T ss_pred cccCCCCEECCCCEEEEeCCc
Confidence 679999999999999998654
No 120
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=40.48 E-value=19 Score=34.92 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=19.5
Q ss_pred ccccCCCEEecCCeEEEEEecC
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMK 251 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK 251 (286)
.+++.||.|++||+|+.|=+..
T Consensus 380 ~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 380 LHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp ESCCTTCEECTTCEEEEEEESS
T ss_pred EeccCCCEECCCCeEEEEEcCC
Confidence 6799999999999999997653
No 121
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=40.35 E-value=19 Score=34.83 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.4
Q ss_pred ccccCCCEEecCCeEEEEEecC
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMK 251 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK 251 (286)
.+++.||.|++||+|+.|=+..
T Consensus 372 ~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 372 LLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp ESCCTTCEECTTSEEEEEEECS
T ss_pred eeccCCCEeCCCCeEEEEEeCC
Confidence 7799999999999999996653
No 122
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=40.32 E-value=23 Score=32.34 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=27.3
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..-++|+..|.+. -.++.|+.|+.|++|+.|.
T Consensus 257 ~~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~ 288 (332)
T 2qj8_A 257 SDQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLH 288 (332)
T ss_dssp GGEEECSSSEEEE-ECSCTTCEECTTCEEEEEE
T ss_pred ceEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEE
Confidence 3457899999775 7789999999999999873
No 123
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=40.02 E-value=12 Score=33.62 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=17.5
Q ss_pred cccCCCEEecCCeEEEEEe
Q 023188 231 FVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IEa 249 (286)
.|++||.|++||+|+.+-.
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGD 201 (252)
T ss_dssp SCCTTCEECTTCEEEECBC
T ss_pred cCCCCCEECCCCEEEEECC
Confidence 7999999999999999864
No 124
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=38.76 E-value=11 Score=36.63 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=17.5
Q ss_pred ccccCCCEEecCCeEEEEE
Q 023188 230 AFVKVGDKVQKGQVVCIIE 248 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IE 248 (286)
.+++.||.|++||+|+.|=
T Consensus 383 l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 383 LNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp ESCCTTCEECTTSEEEEEE
T ss_pred EecCCcCEeCCCCeEEEEe
Confidence 6799999999999999885
No 125
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=38.14 E-value=33 Score=33.29 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=16.2
Q ss_pred EEcCCCCccCCCCeEEEEc
Q 023188 267 ILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 267 Ilve~Gd~V~~G~~L~~Ie 285 (286)
++++.||.|+.|++|++|.
T Consensus 383 l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 383 LNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp ESCCTTCEECTTSEEEEEE
T ss_pred EecCCcCEeCCCCeEEEEe
Confidence 5667899999999999984
No 126
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=38.02 E-value=19 Score=29.10 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=26.4
Q ss_pred eeEecCCCeEEEEEEc-CCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILA-EDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilv-e~Gd~V~~G~~L~~Ie 285 (286)
.+...+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 28 t~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vE 60 (128)
T 1onl_A 28 TDYAQDALGDVVYVELPEVGRVVEKGEAVAVVE 60 (128)
T ss_dssp CHHHHHHHCSEEEEECBCTTCEECTTCEEEEEE
T ss_pred ehHHhhcCCCceEEEecCCCCEEeCCCEEEEEE
Confidence 4455566688888877 9999999999999986
No 127
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=37.76 E-value=14 Score=33.75 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=17.5
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
..|++||.|++||+|+.+-.
T Consensus 232 i~V~~G~~V~~Gq~IG~vG~ 251 (282)
T 2hsi_A 232 IDVKLGQQVPRGGVLGKVGA 251 (282)
T ss_dssp ECSCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 57899999999999998754
No 128
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=37.66 E-value=22 Score=34.89 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.8
Q ss_pred CccccCCCEEecCCeEEEEEecC
Q 023188 229 PAFVKVGDKVQKGQVVCIIEAMK 251 (286)
Q Consensus 229 ~~~VkvGd~V~~Gq~L~~IEamK 251 (286)
..++++||.|++||+|+.|=+.+
T Consensus 414 ~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 414 ELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp EECSCTTCEECTTCEEEEEEESS
T ss_pred EEEccCCCEECCCCeEEEEEcCC
Confidence 36899999999999999997653
No 129
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=37.52 E-value=13 Score=34.45 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.9
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
..|++||.|++||+|+.+-.
T Consensus 239 i~Vk~Gq~V~~GqvIG~vG~ 258 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYSGS 258 (291)
T ss_dssp ECCCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 57999999999999998854
No 130
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=37.38 E-value=20 Score=29.00 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=26.3
Q ss_pred eeEecCCCeEEEEEEc-CCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILA-EDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilv-e~Gd~V~~G~~L~~Ie 285 (286)
.+...+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 29 td~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vE 61 (128)
T 3a7l_A 29 TEHAQELLGDMVFVDLPEVGATVSAGDDCAVAE 61 (128)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEE
T ss_pred ehHHhccCCceEEEEecCCCCEEeCCCEEEEEE
Confidence 4455566688888877 9999999999999986
No 131
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=37.13 E-value=35 Score=31.07 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=37.8
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
...|+|+..|++... |+.-.-|-. .+|+-..-...+.+. +.++.|+.||.|..||.|..+
T Consensus 190 GtpV~A~~~G~V~~~-----------g~~~~~G~~-ViI~Hg~G~~t~Y~H----L~~i~V~~G~~V~~Gq~IG~v 249 (282)
T 2hsi_A 190 GTPIKAPAAGKVILI-----------GDYFFNGKT-VFVDHGQGFISMFCH----LSKIDVKLGQQVPRGGVLGKV 249 (282)
T ss_dssp TCEEECSSCEEEEEE-----------EEETTTEEE-EEEEEETTEEEEEEE----ESEECSCTTCEECTTCEEEEC
T ss_pred CCeEEeccCeEEEEE-----------EEcCCCCCE-EEEEeCCcEEEEEEC----CCccccCCcCEECCCCEEEEE
Confidence 357899999988762 111011332 345554444444443 336789999999999999875
No 132
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=35.91 E-value=19 Score=33.03 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=18.9
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|++++|+.|++||+|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 75 FNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp ESCCTTCEEESCEEEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEEE
Confidence 78999999999999999986
No 133
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=35.02 E-value=19 Score=32.84 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=18.8
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|++++|+.|++||+|+.|+.
T Consensus 76 ~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 76 PLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCCccCCCEEEEEEE
Confidence 78999999999999999986
No 134
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=34.35 E-value=20 Score=32.73 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.9
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|++++|+.|++||+|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 75 DRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EECCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCcEEEEEEE
Confidence 78999999999999999986
No 135
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=33.42 E-value=43 Score=29.94 Aligned_cols=58 Identities=17% Similarity=-0.030 Sum_probs=36.9
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEE-EcCCCCccCCCCeEEEE
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEI-LAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~I-lve~Gd~V~~G~~L~~I 284 (286)
.|+|+..|++... .-..| -| -..+|+...-...+.+. +.++ .|+.||.|..||+|..+
T Consensus 141 pV~A~~~G~V~~~-------g~~~~----~G-~~V~I~H~~G~~t~Y~H----L~~~~~V~~G~~V~~Gq~IG~v 199 (252)
T 3nyy_A 141 PVVSMTDGVVTEK-------GWLEK----GG-WRIGITAPTGAYFYYAH----LDSYAELEKGDPVKAGDLLGYM 199 (252)
T ss_dssp EEECSSCEEEEEE-------EEETT----TE-EEEEEECTTSCEEEEEE----ESEECSCCTTCEECTTCEEEEC
T ss_pred eEEeccCEEEEEE-------EecCC----CC-CEEEEEeCCcEEEEEee----CCCCCcCCCCCEECCCCEEEEE
Confidence 6999999998763 11111 12 23345554444444444 3344 89999999999999875
No 136
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=32.15 E-value=23 Score=32.57 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=19.0
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|++++|+.|++||+|+.|+.
T Consensus 79 ~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 79 WLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEeCCCCEeeCCCEEEEEEE
Confidence 89999999999999999986
No 137
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=31.27 E-value=24 Score=32.71 Aligned_cols=20 Identities=30% Similarity=0.189 Sum_probs=19.0
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|++++|+.|++||+|+.|+.
T Consensus 88 ~~~~dG~~v~~g~~v~~i~G 107 (300)
T 3l0g_A 88 IHKKDGDITGKNSTLVSGEA 107 (300)
T ss_dssp ECCCTTCEECSSCEEEEEEE
T ss_pred EEeCCCCEeeCCCEEEEEEE
Confidence 89999999999999999986
No 138
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=27.67 E-value=1.3e+02 Score=22.33 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEeCCEEEEEEec
Q 023188 105 KKIPDASAISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKK 149 (286)
Q Consensus 105 ~~~~~~~~i~~~i~eI~eLiklvd~s~I~ELelk~~d~~L~Irk~ 149 (286)
+..+|.+.-++++..|+.+++--.-=+|.|-.++..|--|.|+..
T Consensus 25 P~gLt~~Q~~QW~~TIeav~qSakyWNlaEC~~~~s~~~~ilk~r 69 (75)
T 2fqm_A 25 PEGLSGEQKSQWMLTIKAVVQSAKHWNLAECTFEASGEGVIIKKR 69 (75)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHSCGGGSEEEECSSEEEEEEC
T ss_pred CCCccHHHHHHHHHHHHHHHhhhcccchhheEEEecCCcEEEecc
Confidence 778999999999999999999999999999999999999999764
No 139
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=27.63 E-value=31 Score=31.04 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=18.7
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|++++|+.|.+|++|+.|+.
T Consensus 62 ~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 62 QTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EECCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEEe
Confidence 68999999999999999986
No 140
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=27.62 E-value=31 Score=31.92 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=19.0
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|++++|+.|.+|++|+.|+.
T Consensus 90 ~~~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 90 WRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCCEEEEEEe
Confidence 89999999999999999986
No 141
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=27.57 E-value=19 Score=27.35 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=15.3
Q ss_pred CCCCccccCCCEEecCCeEE
Q 023188 226 PGEPAFVKVGDKVQKGQVVC 245 (286)
Q Consensus 226 ~~~~~~VkvGd~V~~Gq~L~ 245 (286)
.+....|++||.|++||.|.
T Consensus 63 ~~~~l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 63 KWRQLNVFEGERVERGDVIS 82 (84)
T ss_dssp TTSCCSSCTTEEECBSCSSB
T ss_pred CCCceEeCCCCEECCCCCcc
Confidence 34557799999999998763
No 142
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=26.72 E-value=32 Score=32.10 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=19.0
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|++++|+.|.+|++|+.|+.
T Consensus 112 ~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 112 WHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEeCCCCEecCCCEEEEEEe
Confidence 89999999999999999986
No 143
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=26.22 E-value=34 Score=31.35 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=19.0
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|++++|+.|..|++|+.|+.
T Consensus 89 ~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 89 WHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp ESCCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999986
No 144
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=25.34 E-value=90 Score=31.49 Aligned_cols=37 Identities=30% Similarity=0.545 Sum_probs=28.0
Q ss_pred cccCCCEEecCCeEEEEEecCeeeeE--ecCCCeEEEEE
Q 023188 231 FVKVGDKVQKGQVVCIIEAMKLMNEI--EADQSGTIAEI 267 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IEamK~~~eI--~Ap~sGvV~~I 267 (286)
.+++||.|..||+++.+.--...+.| .....|+|+++
T Consensus 122 ~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i 160 (578)
T 3gqb_A 122 MVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEV 160 (578)
T ss_dssp CCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEE
T ss_pred ccccCccccccceeeeecccccceecccCCCcCceeEEe
Confidence 58999999999999998654444554 33467888776
No 145
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=24.68 E-value=85 Score=28.92 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=17.7
Q ss_pred EEEEcCCCCccCCCCeEEEE
Q 023188 265 AEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 265 ~~Ilve~Gd~V~~G~~L~~I 284 (286)
.++.|+.|+.|..||+|..+
T Consensus 237 s~i~Vk~Gq~V~~GqvIG~v 256 (291)
T 1qwy_A 237 NRLTVSAGDKVKAGDQIAYS 256 (291)
T ss_dssp SEECCCTTCEECTTCEEEEC
T ss_pred CccccCCcCEECCCCEEEEE
Confidence 46789999999999999875
No 146
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=23.83 E-value=36 Score=31.10 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=18.7
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|++++|+.|..|++|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~l~~v~G 94 (299)
T 2jbm_A 75 WFLPEGSKLVPVARVAEVRG 94 (299)
T ss_dssp ESSCTTCEECSSEEEEEEEE
T ss_pred EEcCCCCCCCCCCEEEEEEE
Confidence 68999999999999999986
No 147
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=20.84 E-value=1.1e+02 Score=30.96 Aligned_cols=37 Identities=32% Similarity=0.501 Sum_probs=26.7
Q ss_pred cccCCCEEecCCeEEEEEecC-eeeeEe--cCCCeEEEEE
Q 023188 231 FVKVGDKVQKGQVVCIIEAMK-LMNEIE--ADQSGTIAEI 267 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IEamK-~~~eI~--Ap~sGvV~~I 267 (286)
.+++||.|..||+++.|.-.. ..+.|. ....|+|++|
T Consensus 123 ~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i 162 (588)
T 3mfy_A 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEI 162 (588)
T ss_dssp CCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE
T ss_pred ccccCcccccCceEEEEecccceeeeeecCCCCCceEEEe
Confidence 579999999999999886543 334443 3367887776
Done!