Query 023190
Match_columns 286
No_of_seqs 193 out of 981
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 17:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3.5E-47 1.2E-51 332.1 11.3 142 1-146 29-173 (174)
2 1ut7_A No apical meristem prot 100.0 2.4E-46 8.1E-51 325.9 7.7 139 1-146 31-170 (171)
3 3nr5_A MAF1, repressor of RNA 9.0 1.2E+02 0.004 25.7 1.4 12 23-34 119-130 (164)
4 3i9v_7 NADH-quinone oxidoreduc 8.3 3.8E+02 0.013 21.6 4.0 48 28-75 41-96 (129)
5 2jv2_A Putative uncharacterize 5.8 1.4E+02 0.0049 22.2 0.4 25 2-30 30-54 (83)
6 2it2_A UPF0130 protein PH1069; 5.3 1.6E+02 0.0055 25.5 0.4 16 211-226 44-59 (200)
7 2xk0_A Polycomb protein PCL; t 5.1 2.9E+02 0.01 20.2 1.6 6 186-191 3-8 (69)
8 2dvk_A UPF0130 protein APE0816 5.0 1.2E+02 0.0042 26.0 -0.6 16 211-226 30-45 (188)
9 2lpm_A Two-component response 4.7 1.8E+02 0.0063 22.4 0.3 7 280-286 101-107 (123)
10 2h7a_A Hypothetical protein YC 4.6 3E+02 0.01 21.8 1.5 16 133-148 13-28 (110)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3.5e-47 Score=332.11 Aligned_cols=142 Identities=65% Similarity=1.195 Sum_probs=118.4
Q ss_pred CccchhhHhccCCCCCCCCCCCcccccCCCCCCCCCCccccCCCceEEEEeeccccCCCCCCCccccCCceEEecCCccc
Q 023190 1 MRSSLCTICAVNAFRSQSPFRLSPKSIFTNLIPWDLPDLALYGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKP 80 (286)
Q Consensus 1 V~hYL~rKi~G~pl~~~~~~~~I~evDVY~~ePWdLP~~~~~ge~eWYFFs~r~rk~~nG~R~~Ratg~G~WK~tG~~k~ 80 (286)
|.|||++|+.|.++ +.++|+|+|||++|||+||+.+..++++||||++|++||++|.|+||+|++||||++|++++
T Consensus 29 V~~YL~~K~~g~~~----~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~ 104 (174)
T 3ulx_A 29 VEHYLCRKAAGQRL----PVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKP 104 (174)
T ss_dssp HHHTHHHHHHTCCC----SSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEE
T ss_pred HHHHHHHHhcCCCC----CcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcE
Confidence 57999999999999 88999999999999999999988889999999999999999999999999999999999999
Q ss_pred cc-CCcceeeEEEEeeccCCCCCCCccCeEEeEEEecCcchhh--hhcCCCCCCCEEEEEEEecCCCCc
Q 023190 81 IG-QPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSA--RKKNSLRLDDWVLCRIYNKKGSIE 146 (286)
Q Consensus 81 I~-~g~~VG~KktLvFy~gk~p~g~kT~WiMhEY~L~~~~~~~--~~~~~~~~~d~VLCRIy~Kk~~~~ 146 (286)
|. .+++||+||+|+||.|++|++.||+|+||||+|.+..... .+.+.+..++|||||||+|++.-+
T Consensus 105 I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~~~~ 173 (174)
T 3ulx_A 105 VAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWE 173 (174)
T ss_dssp ECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESCC---
T ss_pred EeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcCCCcC
Confidence 96 4789999999999999999999999999999999875432 122335678999999999987544
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.4e-46 Score=325.93 Aligned_cols=139 Identities=63% Similarity=1.131 Sum_probs=114.1
Q ss_pred CccchhhHhccCCCCCCCCCCCcccccCCCCCCCCCCccccCCCceEEEEeeccccCCCCCCCccccCCceEEecCCccc
Q 023190 1 MRSSLCTICAVNAFRSQSPFRLSPKSIFTNLIPWDLPDLALYGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKP 80 (286)
Q Consensus 1 V~hYL~rKi~G~pl~~~~~~~~I~evDVY~~ePWdLP~~~~~ge~eWYFFs~r~rk~~nG~R~~Ratg~G~WK~tG~~k~ 80 (286)
|.|||++|+.|.++ +.++|+++|||++|||+||+.+..++++||||+++++||++|.|+||+|++||||++|++++
T Consensus 31 v~~YL~~K~~g~~~----~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~ 106 (171)
T 1ut7_A 31 MVQYLCRKAAGYDF----SLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKI 106 (171)
T ss_dssp HHHTHHHHHTTCCC----SSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCC----CCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCce
Confidence 57999999999999 88999999999999999999988889999999999999999999999999999999999999
Q ss_pred cc-CCcceeeEEEEeeccCCCCCCCccCeEEeEEEecCcchhhhhcCCCCCCCEEEEEEEecCCCCc
Q 023190 81 IG-QPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGSIE 146 (286)
Q Consensus 81 I~-~g~~VG~KktLvFy~gk~p~g~kT~WiMhEY~L~~~~~~~~~~~~~~~~d~VLCRIy~Kk~~~~ 146 (286)
|. .+++||+||+|+||.|+++++.||+|+||||+|.+... ..+....++|||||||+|++..+
T Consensus 107 I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~---~~~~~~~~~~VlCrv~~k~~~~~ 170 (171)
T 1ut7_A 107 ISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR---RNGSTKLDDWVLCRIYKKQSSAQ 170 (171)
T ss_dssp EEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------CCEEEEEEEECC----
T ss_pred EEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc---ccCcccCCCEEEEEEEEcCCCCC
Confidence 95 46899999999999999999999999999999998642 11234578999999999987543
No 3
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=8.98 E-value=1.2e+02 Score=25.71 Aligned_cols=12 Identities=8% Similarity=-0.127 Sum_probs=10.6
Q ss_pred cccccCCCCCCC
Q 023190 23 SPKSIFTNLIPW 34 (286)
Q Consensus 23 I~evDVY~~ePW 34 (286)
+.++|||.+.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 578899999997
No 4
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=8.28 E-value=3.8e+02 Score=21.60 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=27.6
Q ss_pred CCCC-CCCCCCcc----ccC-CCceEEEEeeccccCCCCCCC-cccc-CCceEEec
Q 023190 28 FTNL-IPWDLPDL----ALY-GEKEWYFFTPRDRKYPNGSRP-NRAA-GSGYWKAT 75 (286)
Q Consensus 28 VY~~-ePWdLP~~----~~~-ge~eWYFFs~r~rk~~nG~R~-~Rat-g~G~WK~t 75 (286)
||.- -|||||-. ++. +.++=||+.-....+..=.+. -|.- +.-.||+.
T Consensus 41 IYRMeRPydLPTtvMsvsLS~~~geP~l~a~vSprha~lK~islr~~g~h~hwh~h 96 (129)
T 3i9v_7 41 IYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGLRLPRAHIHLHAH 96 (129)
T ss_dssp HSCCSSCCCCSCSEEEEEEECSSSCEEEEEEECCSSSSSCCEEEEETTTTEEEEEE
T ss_pred HHhhcCcccCCceeEEEEeccCCCCeeEEEecCcchhhhcceEEecCCCcceeeee
Confidence 7875 49999975 232 447778887654333322221 2332 34589876
No 5
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=5.81 E-value=1.4e+02 Score=22.16 Aligned_cols=25 Identities=0% Similarity=-0.322 Sum_probs=17.5
Q ss_pred ccchhhHhccCCCCCCCCCCCcccccCCC
Q 023190 2 RSSLCTICAVNAFRSQSPFRLSPKSIFTN 30 (286)
Q Consensus 2 ~hYL~rKi~G~pl~~~~~~~~I~evDVY~ 30 (286)
..||++++.|.|+ ..+-+..+++++
T Consensus 30 ~~~lk~~L~grPV----~~GD~I~i~~~G 54 (83)
T 2jv2_A 30 VDVIRIKLQGKTV----RTGDVIGISILG 54 (83)
T ss_dssp HHHHHHHHTTSEE----CTTCEEEEEETT
T ss_pred HHHHHHHHCCCCc----cCCCEEEEeeCC
Confidence 3699999999999 554344466643
No 6
>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A
Probab=5.27 E-value=1.6e+02 Score=25.48 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=12.3
Q ss_pred CCcccccCCCCccccc
Q 023190 211 SVPKLNTDSSCSEHVV 226 (286)
Q Consensus 211 s~~~~~~~~s~~~~~~ 226 (286)
|.|.+-|.||||--|.
T Consensus 44 s~~~~~TTSSCSGRIs 59 (200)
T 2it2_A 44 SIENYFTTSSCSGRIS 59 (200)
T ss_dssp HSTTEEECSCBCCEEE
T ss_pred CCCCcEEccCCCccEE
Confidence 5677779999997554
No 7
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=5.09 E-value=2.9e+02 Score=20.18 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=2.5
Q ss_pred CCCCCC
Q 023190 186 LLPNPA 191 (286)
Q Consensus 186 ~~~~~~ 191 (286)
+.|||+
T Consensus 3 m~pp~~ 8 (69)
T 2xk0_A 3 MAPPVA 8 (69)
T ss_dssp SSCSSS
T ss_pred CCCCCC
Confidence 344443
No 8
>2dvk_A UPF0130 protein APE0816; hypothetical protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=4.96 E-value=1.2e+02 Score=26.02 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=12.4
Q ss_pred CCcccccCCCCccccc
Q 023190 211 SVPKLNTDSSCSEHVV 226 (286)
Q Consensus 211 s~~~~~~~~s~~~~~~ 226 (286)
|.|.+-|.||||-.|.
T Consensus 30 s~~~~~TTSSCSGRIs 45 (188)
T 2dvk_A 30 RPSKIVSTSSCTGRIT 45 (188)
T ss_dssp CSTTEEEEEEECCEEE
T ss_pred CCCCcEEccCCCccEE
Confidence 6677889999997544
No 9
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=4.67 E-value=1.8e+02 Score=22.43 Aligned_cols=7 Identities=57% Similarity=0.946 Sum_probs=5.9
Q ss_pred hhhCCCC
Q 023190 280 MYFTKPF 286 (286)
Q Consensus 280 ~~~~k~f 286 (286)
-||.|||
T Consensus 101 ~yl~KP~ 107 (123)
T 2lpm_A 101 PLLTKPF 107 (123)
T ss_dssp SCBCSSS
T ss_pred cEEECCC
Confidence 4899998
No 10
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/BE sandwich, beta-sheet layer antiparallel 3124 topology; NMR {Escherichia coli} SCOP: d.350.1.1
Probab=4.57 E-value=3e+02 Score=21.83 Aligned_cols=16 Identities=19% Similarity=0.357 Sum_probs=11.7
Q ss_pred EEEEEEEecCCCCccc
Q 023190 133 WVLCRIYNKKGSIEKQ 148 (286)
Q Consensus 133 ~VLCRIy~Kk~~~~k~ 148 (286)
..||-||+++++.+-.
T Consensus 13 ~mlC~IYkS~KK~~~Y 28 (110)
T 2h7a_A 13 SMFCVIYRSSKRDQTY 28 (110)
T ss_dssp CCCEEEEEETTSSSCE
T ss_pred eEEEEEEecCCCCceE
Confidence 3799999987665543
Done!