BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023192
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I33|A Chain A, The Structure Of The Class C Acid Phosphatase From
Bacillus Anthracis
pdb|2I33|B Chain B, The Structure Of The Class C Acid Phosphatase From
Bacillus Anthracis
pdb|2I34|A Chain A, The Crystal Structure Of Class C Acid Phosphatase From
Bacillus Anthracis With Tungstate Bound
pdb|2I34|B Chain B, The Crystal Structure Of Class C Acid Phosphatase From
Bacillus Anthracis With Tungstate Bound
Length = 258
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 37/174 (21%)
Query: 134 KDAWIFDIDETLLSNLPYYQ---EHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVL 190
K A + D+DET+L N P+ + G G P ++D W+ KA + A+ S+ +
Sbjct: 59 KPAIVLDLDETVLDNSPHQAMSVKTGKGY----PYKWDDWINKAEAEALPGSIDFLKYTE 114
Query: 191 GLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK--LILRSSDDHGKLAIIYKSEKRNEM 248
G I+ ++ R Q T+ NL G K ++L+ + GK EKR E+
Sbjct: 115 SKGVDIYYISNRKTNQLDATIKNLERVGAPQATKEHILLQDPKEKGK-------EKRREL 167
Query: 249 VQEGYRILGNSGDQWSDLLGSPMPSRSFK-------------------LPNPMY 283
V + + I+ GD SD G +S K PNPMY
Sbjct: 168 VSQTHDIVLFFGDNLSDFTG--FDGKSVKDRNQAVTDSKAQFGEKFIIFPNPMY 219
>pdb|3OCY|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Inorganic Phosphate
pdb|3OCZ|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With The Inhibitor Adenosine
5-O-Thiomonophosphate
Length = 262
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 140 DIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLL 199
D+DET+L N PY + F+ ++ +WV+ S A+ +++ V K+F +
Sbjct: 64 DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 200 TGRSEK-QRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGN 258
T R + ++S T+D++ G ++ D A + E+ ++GY I+
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSAKAARFA-----EIEKQGYEIVLY 178
Query: 259 SGDQWSDL 266
GD D
Sbjct: 179 VGDNLDDF 186
>pdb|3PCT|A Chain A, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
pdb|3PCT|B Chain B, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
pdb|3PCT|C Chain C, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
Length = 260
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 140 DIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLL 199
D+DET++ N Y + F+P + KWV+ S AI +++ V G +F +
Sbjct: 64 DLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFV 123
Query: 200 TGRSEK-QRSITVDNLINAG 218
+ R + +++ TVD++ G
Sbjct: 124 SNRRDDVEKAGTVDDMKRLG 143
>pdb|3ET4|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase
pdb|3ET5|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Tungstate
Length = 255
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 140 DIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLL 199
D+DET+L N PY + F+ ++ +WV+ S A+ +++ V K+F +
Sbjct: 65 DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHKGKVFYV 124
Query: 200 TGRSE-KQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGN 258
T R + +++ T+D++ G ++ D A + E+ ++GY I+
Sbjct: 125 TNRKDSSEKAGTIDDMKRLGFNGVEESAFYLKKDKSAKAARFA-----EIEKQGYEIVLY 179
Query: 259 SGDQWSDL 266
GD D
Sbjct: 180 VGDNLDDF 187
>pdb|3SF0|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D64n Complexed With 5'amp
Length = 262
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 140 DIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLL 199
++DET+L N PY + F+ ++ +WV+ S A+ +++ V K+F +
Sbjct: 64 NLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 200 TGRSEK-QRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGN 258
T R + ++S T+D++ G ++ D A + E+ ++GY I+
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSAKAARFA-----EIEKQGYEIVLY 178
Query: 259 SGDQWSDL 266
GD D
Sbjct: 179 VGDNLDDF 186
>pdb|3OCU|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With Nmn
pdb|3OCV|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 5'-Amp
pdb|3OCW|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 3'-Amp
pdb|3OCX|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 2'-Amp
Length = 262
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 140 DIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLL 199
D++ET+L N PY + F+ ++ +WV+ S A+ +++ V K+F +
Sbjct: 64 DLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 200 TGRSEK-QRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGN 258
T R + ++S T+D++ G ++ D A + E+ ++GY I+
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSAKAARFA-----EIEKQGYEIVLY 178
Query: 259 SGDQWSDL 266
GD D
Sbjct: 179 VGDNLDDF 186
>pdb|1USU|B Chain B, The Structure Of The Complex Between Aha1 And Hsp90
Length = 170
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 84 NNLNPWKTIPRECLEYVRDYMMGRGYGLDLERVSNEAGVYAKSV-ELRGD-------GKD 135
NN N W + + C+ + ++Y + G++ V ++ KSV + GD GK
Sbjct: 18 NNPNNWHWVDKNCIGWAKEYFKQKIVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKV 77
Query: 136 AWIFDIDETLL 146
+FD+ T+L
Sbjct: 78 ISLFDLKITVL 88
>pdb|1USV|B Chain B, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|D Chain D, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|F Chain F, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|H Chain H, The Structure Of The Complex Between Aha1 And Hsp90
Length = 170
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 84 NNLNPWKTIPRECLEYVRDYMMGRGYGLDLERVSNEAGVYAKSV-ELRGD-------GKD 135
NN N W + + C+ + ++Y + G++ V ++ KSV + GD GK
Sbjct: 18 NNPNNWHWVDKNCIGWAKEYFKQKLVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKV 77
Query: 136 AWIFDIDETLL 146
+FD+ T+L
Sbjct: 78 ISLFDLKITVL 88
>pdb|4AFA|A Chain A, Crystal Structure Of Subtype-Switched Epithelial Adhesin 1
To 2 A Domain (Epa1to2a) From Candida Glabrata In
Complex With Glycerol
Length = 262
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 194 FKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQE 251
++ + + G + +TV ++AGV Y +L + D++G L+ +K+E V +
Sbjct: 183 YQAYAIWGSKTAKDELTVH--LDAGVYYPIRLFYNNRDNNGALSFTFKTESNENTVSD 238
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core
pdb|2XA7|A Chain A, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 621
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 17 FRIVLLFSLCSLISRAFSHETVNAH 41
R + L S+C+L S FSHE V H
Sbjct: 345 LRYLALESMCTLASSEFSHEAVKTH 369
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|L Chain L, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|A Chain A, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|L Chain L, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 623
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 17 FRIVLLFSLCSLISRAFSHETVNAH 41
R + L S+C+L S FSHE V H
Sbjct: 345 LRYLALESMCTLASSEFSHEAVKTH 369
>pdb|2P9J|A Chain A, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|B Chain B, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|C Chain C, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|D Chain D, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|E Chain E, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|F Chain F, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|G Chain G, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|H Chain H, Crystal Structure Of Aq2171 From Aquifex Aeolicus
Length = 162
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 137 WIFDIDETLLSNLPYYQEHGYGLEIFNPVE 166
I DID L YY EHG +++FN ++
Sbjct: 12 LIXDIDGVLTDGKLYYTEHGETIKVFNVLD 41
>pdb|2A5Y|B Chain B, Structure Of A Ced-4CED-9 Complex
pdb|2A5Y|C Chain C, Structure Of A Ced-4CED-9 Complex
pdb|3LQQ|A Chain A, Structure Of The Ced-4 Apoptosome
pdb|3LQQ|B Chain B, Structure Of The Ced-4 Apoptosome
pdb|3LQR|A Chain A, Structure Of Ced-4:ced-3 Complex
pdb|3LQR|B Chain B, Structure Of Ced-4:ced-3 Complex
Length = 549
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 43 NHILPRPLILKYPDNLIETQLNQLNEEVKLQCTTWRFAVEANNL--NPWKTIPRECLEYV 100
N ++ RP L D++++ + + +E++L+C VE +N + I LE
Sbjct: 237 NALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEID 296
Query: 101 RDYMMGRGYGLDLERVSNEAGVYAKSVEL 129
Y YG+ + E V K++EL
Sbjct: 297 ECYDFLEAYGMPMPVGEKEEDVLNKTIEL 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,922,657
Number of Sequences: 62578
Number of extensions: 375527
Number of successful extensions: 971
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 17
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)