Query 023192
Match_columns 286
No_of_seqs 326 out of 1577
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:07:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01675 plant-AP plant acid 100.0 1.6E-72 3.4E-77 502.6 22.8 221 66-286 9-229 (229)
2 TIGR01680 Veg_Stor_Prot vegeta 100.0 4.6E-67 9.9E-72 474.8 17.9 215 68-284 37-254 (275)
3 PF03767 Acid_phosphat_B: HAD 100.0 2.5E-53 5.5E-58 381.1 1.9 216 66-285 8-228 (229)
4 TIGR01533 lipo_e_P4 5'-nucleot 100.0 1.5E-33 3.2E-38 257.7 19.7 179 98-284 38-238 (266)
5 COG2503 Predicted secreted aci 99.9 7.4E-27 1.6E-31 206.9 13.4 151 126-284 71-242 (274)
6 PRK11009 aphA acid phosphatase 99.8 9.8E-21 2.1E-25 170.8 11.8 141 134-283 63-218 (237)
7 TIGR01672 AphA HAD superfamily 99.7 2.1E-17 4.4E-22 149.2 12.7 137 131-278 60-210 (237)
8 COG0546 Gph Predicted phosphat 99.5 6.4E-14 1.4E-18 124.6 11.6 98 176-279 88-189 (220)
9 PHA02530 pseT polynucleotide k 99.5 3.3E-13 7.1E-18 124.7 15.5 168 93-279 113-296 (300)
10 COG0637 Predicted phosphatase/ 99.5 6.6E-14 1.4E-18 124.9 9.7 102 174-281 83-188 (221)
11 PRK14988 GMP/IMP nucleotidase; 99.5 1.6E-13 3.6E-18 122.4 11.0 101 176-282 92-197 (224)
12 PRK11587 putative phosphatase; 99.5 2.6E-13 5.7E-18 120.0 11.6 101 174-280 80-183 (218)
13 TIGR01422 phosphonatase phosph 99.5 3.4E-13 7.3E-18 121.8 12.3 101 175-281 97-203 (253)
14 TIGR03351 PhnX-like phosphonat 99.5 5.7E-13 1.2E-17 117.4 12.1 100 175-280 85-192 (220)
15 PLN03243 haloacid dehalogenase 99.5 7.2E-13 1.6E-17 121.2 12.7 100 175-280 107-210 (260)
16 PRK13226 phosphoglycolate phos 99.5 6.8E-13 1.5E-17 118.5 12.3 100 175-278 93-194 (229)
17 PLN02770 haloacid dehalogenase 99.4 9.8E-13 2.1E-17 119.0 12.8 100 175-280 106-209 (248)
18 PRK13288 pyrophosphatase PpaX; 99.4 8.9E-13 1.9E-17 115.9 12.0 99 175-279 80-182 (214)
19 TIGR02253 CTE7 HAD superfamily 99.4 1.3E-12 2.7E-17 115.0 12.6 102 175-282 92-198 (221)
20 PRK13225 phosphoglycolate phos 99.4 1.1E-12 2.4E-17 120.9 12.1 98 175-280 140-240 (273)
21 PRK10826 2-deoxyglucose-6-phos 99.4 3.3E-12 7.2E-17 113.1 13.7 101 175-281 90-194 (222)
22 PLN02575 haloacid dehalogenase 99.4 1.5E-12 3.3E-17 124.7 12.3 100 175-280 214-317 (381)
23 TIGR01454 AHBA_synth_RP 3-amin 99.4 1.8E-12 3.9E-17 113.3 11.3 98 175-278 73-174 (205)
24 TIGR01990 bPGM beta-phosphoglu 99.4 2E-12 4.3E-17 110.4 10.4 96 176-279 86-185 (185)
25 PRK13478 phosphonoacetaldehyde 99.4 3.3E-12 7.1E-17 116.5 12.5 100 175-280 99-204 (267)
26 TIGR01449 PGP_bact 2-phosphogl 99.4 2.4E-12 5.1E-17 112.5 11.1 99 175-279 83-185 (213)
27 TIGR01656 Histidinol-ppas hist 99.4 1.5E-12 3.3E-17 108.7 9.4 128 135-280 1-146 (147)
28 TIGR01428 HAD_type_II 2-haloal 99.4 4.4E-12 9.5E-17 110.1 12.2 103 175-281 90-194 (198)
29 TIGR01689 EcbF-BcbF capsule bi 99.4 2.2E-12 4.8E-17 105.8 9.6 76 134-230 1-88 (126)
30 PRK13223 phosphoglycolate phos 99.3 1.5E-11 3.2E-16 113.1 13.4 99 176-280 100-202 (272)
31 TIGR01548 HAD-SF-IA-hyp1 haloa 99.3 5.9E-12 1.3E-16 109.6 10.3 90 177-270 106-195 (197)
32 cd01427 HAD_like Haloacid deha 99.3 3E-12 6.5E-17 101.7 7.6 120 136-277 1-138 (139)
33 PRK06698 bifunctional 5'-methy 99.3 4.2E-12 9E-17 124.7 10.0 98 175-280 328-428 (459)
34 TIGR01662 HAD-SF-IIIA HAD-supe 99.3 7.3E-12 1.6E-16 102.1 9.5 123 135-278 1-130 (132)
35 PLN02779 haloacid dehalogenase 99.3 2.8E-11 6.1E-16 112.1 13.9 100 176-281 143-248 (286)
36 TIGR02009 PGMB-YQAB-SF beta-ph 99.3 1E-11 2.2E-16 106.0 10.0 95 175-277 86-184 (185)
37 TIGR01993 Pyr-5-nucltdase pyri 99.3 1.6E-11 3.4E-16 105.5 10.1 96 175-277 82-183 (184)
38 PRK09449 dUMP phosphatase; Pro 99.3 3.3E-11 7.1E-16 106.5 12.0 97 176-279 94-196 (224)
39 TIGR01261 hisB_Nterm histidino 99.3 1.9E-11 4.1E-16 104.2 10.0 127 135-280 2-148 (161)
40 PLN02940 riboflavin kinase 99.3 3E-11 6.6E-16 116.2 12.6 100 175-280 91-195 (382)
41 PRK13222 phosphoglycolate phos 99.3 4.7E-11 1E-15 105.1 12.8 101 175-279 91-193 (226)
42 TIGR00213 GmhB_yaeD D,D-heptos 99.3 3.6E-11 7.7E-16 103.3 11.6 119 135-275 2-146 (176)
43 PRK10725 fructose-1-P/6-phosph 99.3 5.6E-11 1.2E-15 102.0 12.4 99 175-279 86-186 (188)
44 smart00775 LNS2 LNS2 domain. T 99.3 6E-11 1.3E-15 100.8 12.2 118 136-269 1-135 (157)
45 TIGR01509 HAD-SF-IA-v3 haloaci 99.3 4.5E-11 9.7E-16 101.4 11.0 97 176-277 84-182 (183)
46 TIGR01664 DNA-3'-Pase DNA 3'-p 99.3 2.2E-11 4.8E-16 104.3 8.7 123 134-274 13-157 (166)
47 PRK09456 ?-D-glucose-1-phospha 99.2 4.4E-11 9.5E-16 104.3 10.5 100 176-281 83-187 (199)
48 PF13419 HAD_2: Haloacid dehal 99.2 1.2E-11 2.5E-16 103.0 6.5 100 174-277 74-175 (176)
49 TIGR02252 DREG-2 REG-2-like, H 99.2 5.1E-11 1.1E-15 103.7 10.7 93 177-276 105-202 (203)
50 TIGR01549 HAD-SF-IA-v1 haloaci 99.2 2.2E-11 4.9E-16 101.3 8.0 128 136-270 1-151 (154)
51 PRK08942 D,D-heptose 1,7-bisph 99.2 7.2E-11 1.6E-15 101.7 10.6 126 134-280 3-148 (181)
52 PF08235 LNS2: LNS2 (Lipin/Ned 99.2 1.1E-10 2.4E-15 99.0 10.6 117 136-269 1-135 (157)
53 COG2179 Predicted hydrolase of 99.2 1.1E-10 2.5E-15 99.0 9.8 110 130-278 24-137 (175)
54 PHA02597 30.2 hypothetical pro 99.2 1.5E-10 3.3E-15 100.5 10.8 136 134-279 2-174 (197)
55 PRK06769 hypothetical protein; 99.2 4.4E-11 9.5E-16 102.8 6.6 124 133-278 3-136 (173)
56 PLN02954 phosphoserine phospha 99.2 3.3E-10 7.1E-15 100.1 12.3 138 133-278 11-194 (224)
57 TIGR02247 HAD-1A3-hyp Epoxide 99.2 2.2E-10 4.7E-15 100.4 10.7 103 175-281 92-198 (211)
58 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.2 3.7E-10 8E-15 97.5 11.6 105 175-282 78-193 (201)
59 PRK10563 6-phosphogluconate ph 99.2 2E-10 4.4E-15 101.3 10.0 95 175-278 86-185 (221)
60 TIGR02254 YjjG/YfnB HAD superf 99.1 5.1E-10 1.1E-14 98.2 11.7 97 175-278 95-197 (224)
61 TIGR00338 serB phosphoserine p 99.1 6.4E-10 1.4E-14 97.9 11.5 93 175-275 83-191 (219)
62 PRK10748 flavin mononucleotide 99.1 4.5E-10 9.9E-15 100.9 10.5 93 176-280 112-209 (238)
63 PRK13582 thrH phosphoserine ph 99.1 3E-10 6.5E-15 98.8 8.8 89 174-269 65-160 (205)
64 TIGR01670 YrbI-phosphatas 3-de 99.1 4.8E-10 1E-14 94.6 7.6 118 134-280 1-119 (154)
65 TIGR01489 DKMTPPase-SF 2,3-dik 99.0 1.9E-09 4.1E-14 91.9 10.9 99 175-276 70-185 (188)
66 TIGR01685 MDP-1 magnesium-depe 99.0 3.8E-10 8.2E-15 97.5 6.5 137 134-281 2-159 (174)
67 PLN02919 haloacid dehalogenase 99.0 2.2E-09 4.8E-14 115.1 13.7 101 177-281 161-264 (1057)
68 COG3700 AphA Acid phosphatase 99.0 1.3E-09 2.9E-14 93.5 8.6 147 130-283 59-218 (237)
69 TIGR02726 phenyl_P_delta pheny 99.0 8.5E-10 1.8E-14 94.9 6.3 117 134-280 7-125 (169)
70 TIGR01681 HAD-SF-IIIC HAD-supe 99.0 2.8E-09 6.1E-14 87.3 8.4 115 135-268 1-123 (128)
71 PRK09552 mtnX 2-hydroxy-3-keto 98.9 5.4E-09 1.2E-13 92.6 9.9 97 175-277 72-184 (219)
72 COG1011 Predicted hydrolase (H 98.9 1.1E-08 2.4E-13 90.0 11.3 100 176-282 98-202 (229)
73 smart00577 CPDc catalytic doma 98.9 1.6E-09 3.4E-14 90.8 5.2 125 134-270 2-132 (148)
74 PF13344 Hydrolase_6: Haloacid 98.9 9.1E-09 2E-13 81.1 9.2 64 137-227 1-65 (101)
75 KOG2914 Predicted haloacid-hal 98.9 1.2E-08 2.7E-13 91.3 11.1 148 132-281 8-198 (222)
76 TIGR01668 YqeG_hyp_ppase HAD s 98.9 8.8E-09 1.9E-13 88.3 8.9 109 132-278 23-135 (170)
77 PRK05446 imidazole glycerol-ph 98.9 1.4E-08 3E-13 96.9 10.9 131 134-282 2-150 (354)
78 TIGR01493 HAD-SF-IA-v2 Haloaci 98.9 2.9E-09 6.3E-14 90.4 5.1 83 175-270 88-173 (175)
79 PRK09484 3-deoxy-D-manno-octul 98.8 5.5E-09 1.2E-13 90.6 6.2 112 133-274 20-134 (183)
80 TIGR01488 HAD-SF-IB Haloacid D 98.8 4.8E-08 1E-12 82.7 10.7 93 175-270 71-175 (177)
81 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.8 5.9E-08 1.3E-12 84.2 11.0 103 176-281 86-200 (202)
82 TIGR01663 PNK-3'Pase polynucle 98.8 2.7E-08 6E-13 99.3 9.7 123 132-269 166-300 (526)
83 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.7 8.7E-08 1.9E-12 86.3 10.1 101 132-267 6-109 (242)
84 TIGR02137 HSK-PSP phosphoserin 98.7 1.2E-07 2.6E-12 83.7 10.5 91 175-270 66-161 (203)
85 TIGR03333 salvage_mtnX 2-hydro 98.7 1.3E-07 2.8E-12 83.6 10.5 98 175-276 68-179 (214)
86 PRK11133 serB phosphoserine ph 98.7 3.3E-07 7.2E-12 86.5 12.9 99 175-281 179-291 (322)
87 PLN02645 phosphoglycolate phos 98.6 7.6E-08 1.6E-12 90.2 8.0 63 133-222 27-89 (311)
88 PRK08238 hypothetical protein; 98.6 2.5E-07 5.4E-12 91.7 12.0 91 176-276 71-162 (479)
89 PF06941 NT5C: 5' nucleotidase 98.6 6.8E-08 1.5E-12 84.0 6.3 88 174-281 70-164 (191)
90 TIGR01684 viral_ppase viral ph 98.6 2.9E-07 6.3E-12 85.3 9.0 71 132-229 124-195 (301)
91 COG0647 NagD Predicted sugar p 98.5 8.8E-08 1.9E-12 88.1 5.4 99 132-257 6-115 (269)
92 PRK11590 hypothetical protein; 98.5 6.5E-07 1.4E-11 79.0 10.7 103 176-281 94-205 (211)
93 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.5 2.3E-07 5.1E-12 84.6 7.8 64 135-221 2-65 (257)
94 PRK10444 UMP phosphatase; Prov 98.5 3.3E-07 7.1E-12 83.4 8.6 60 135-221 2-61 (248)
95 COG0241 HisB Histidinol phosph 98.5 1.2E-06 2.7E-11 76.0 11.7 126 134-281 5-151 (181)
96 TIGR01686 FkbH FkbH-like domai 98.5 5.2E-07 1.1E-11 84.8 9.5 115 134-271 3-121 (320)
97 TIGR01452 PGP_euk phosphoglyco 98.5 4.1E-07 9E-12 83.7 8.5 61 134-221 2-62 (279)
98 PF09419 PGP_phosphatase: Mito 98.5 1.7E-06 3.6E-11 74.5 11.4 119 129-281 36-166 (168)
99 COG1778 Low specificity phosph 98.4 3.1E-07 6.7E-12 77.5 5.3 107 134-268 8-114 (170)
100 PLN02811 hydrolase 98.4 5.7E-07 1.2E-11 79.6 7.3 105 175-281 76-186 (220)
101 COG0560 SerB Phosphoserine pho 98.4 2.7E-06 5.9E-11 75.7 11.0 90 176-268 76-175 (212)
102 PHA03398 viral phosphatase sup 98.4 1.5E-06 3.2E-11 80.8 9.1 72 132-230 126-198 (303)
103 KOG1615 Phosphoserine phosphat 98.3 3.6E-06 7.7E-11 73.5 10.0 106 167-276 78-196 (227)
104 PF12710 HAD: haloacid dehalog 98.3 3.6E-06 7.8E-11 71.8 8.9 85 180-268 92-190 (192)
105 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.3 1.5E-06 3.3E-11 78.9 6.7 60 135-221 2-61 (249)
106 PRK01158 phosphoglycolate phos 98.3 2.7E-06 5.9E-11 75.2 7.8 59 134-221 3-61 (230)
107 PRK15126 thiamin pyrimidine py 98.3 3.1E-06 6.7E-11 77.2 8.1 60 134-222 2-61 (272)
108 PRK10530 pyridoxal phosphate ( 98.3 3E-06 6.6E-11 76.7 7.9 59 134-221 3-61 (272)
109 PRK10976 putative hydrolase; P 98.2 3.4E-06 7.4E-11 76.5 7.8 59 134-221 2-60 (266)
110 PRK00192 mannosyl-3-phosphogly 98.2 4.1E-06 8.9E-11 76.7 7.9 60 134-222 4-63 (273)
111 TIGR01487 SPP-like sucrose-pho 98.2 5.3E-06 1.1E-10 73.0 7.7 57 135-220 2-58 (215)
112 PRK10513 sugar phosphate phosp 98.2 5.3E-06 1.2E-10 75.3 7.6 58 134-220 3-60 (270)
113 TIGR01545 YfhB_g-proteo haloac 98.2 1.5E-05 3.3E-10 70.7 10.1 101 177-281 94-204 (210)
114 PF08282 Hydrolase_3: haloacid 98.1 6.2E-06 1.3E-10 72.4 7.4 56 137-221 1-56 (254)
115 TIGR02463 MPGP_rel mannosyl-3- 98.1 6.8E-06 1.5E-10 72.5 7.6 55 137-220 2-56 (221)
116 PF06888 Put_Phosphatase: Puta 98.1 2E-05 4.3E-10 71.3 10.6 93 174-269 68-185 (234)
117 TIGR02461 osmo_MPG_phos mannos 98.1 6.9E-06 1.5E-10 73.5 7.6 55 137-221 2-56 (225)
118 TIGR01482 SPP-subfamily Sucros 98.1 5.5E-06 1.2E-10 72.9 6.9 55 137-220 1-55 (225)
119 TIGR01691 enolase-ppase 2,3-di 98.1 1.7E-05 3.7E-10 71.0 9.7 101 175-280 93-197 (220)
120 COG0561 Cof Predicted hydrolas 98.1 8.5E-06 1.8E-10 73.9 7.7 59 134-221 3-61 (264)
121 PRK03669 mannosyl-3-phosphogly 98.1 9.3E-06 2E-10 74.3 7.8 59 133-220 6-64 (271)
122 TIGR00099 Cof-subfamily Cof su 98.1 1.1E-05 2.4E-10 72.8 7.8 56 137-221 2-57 (256)
123 TIGR01486 HAD-SF-IIB-MPGP mann 98.1 1.1E-05 2.3E-10 73.1 7.6 56 137-221 2-57 (256)
124 TIGR02251 HIF-SF_euk Dullard-l 98.1 7.7E-06 1.7E-10 69.7 6.2 124 134-270 1-129 (162)
125 PRK12702 mannosyl-3-phosphogly 98.0 1.6E-05 3.5E-10 73.9 8.0 59 134-221 1-59 (302)
126 KOG2882 p-Nitrophenyl phosphat 98.0 5.5E-06 1.2E-10 76.6 4.8 98 132-256 20-129 (306)
127 PTZ00174 phosphomannomutase; P 98.0 2.2E-05 4.8E-10 71.0 8.5 54 133-215 4-57 (247)
128 TIGR01460 HAD-SF-IIA Haloacid 98.0 1.2E-05 2.6E-10 72.3 6.1 58 137-221 1-59 (236)
129 PF08645 PNK3P: Polynucleotide 97.9 6E-06 1.3E-10 70.3 3.2 110 135-265 1-130 (159)
130 PLN02887 hydrolase family prot 97.9 3.7E-05 8E-10 78.0 8.7 59 133-220 307-365 (580)
131 PF00702 Hydrolase: haloacid d 97.9 2.4E-05 5.3E-10 67.5 6.4 88 175-270 125-212 (215)
132 TIGR01456 CECR5 HAD-superfamil 97.9 3.2E-05 6.9E-10 72.8 6.7 58 136-220 2-64 (321)
133 TIGR01544 HAD-SF-IE haloacid d 97.8 0.00016 3.5E-09 67.0 10.6 105 163-270 107-228 (277)
134 TIGR02250 FCP1_euk FCP1-like p 97.8 0.00027 5.8E-09 60.0 10.7 142 131-284 3-156 (156)
135 TIGR01484 HAD-SF-IIB HAD-super 97.8 6.6E-05 1.4E-09 65.3 7.2 52 137-216 2-53 (204)
136 TIGR01525 ATPase-IB_hvy heavy 97.7 0.00016 3.5E-09 73.0 9.7 83 175-271 382-465 (556)
137 PTZ00445 p36-lilke protein; Pr 97.7 0.00021 4.5E-09 63.6 8.8 167 98-281 11-207 (219)
138 PF12689 Acid_PPase: Acid Phos 97.6 0.00014 2.9E-09 62.7 6.8 135 134-280 3-152 (169)
139 KOG3120 Predicted haloacid deh 97.6 0.00057 1.2E-08 61.0 10.4 133 132-267 11-196 (256)
140 TIGR01512 ATPase-IB2_Cd heavy 97.6 0.00016 3.4E-09 72.8 7.9 82 175-270 360-442 (536)
141 PRK14502 bifunctional mannosyl 97.6 0.00017 3.8E-09 73.8 8.2 61 131-220 413-473 (694)
142 TIGR01485 SPP_plant-cyano sucr 97.6 0.00019 4.2E-09 64.7 7.6 60 136-221 3-62 (249)
143 TIGR01511 ATPase-IB1_Cu copper 97.6 0.00031 6.7E-09 71.1 9.7 81 175-270 403-483 (562)
144 COG4850 Uncharacterized conser 97.6 0.00036 7.7E-09 65.4 9.1 124 135-268 162-293 (373)
145 PF11019 DUF2608: Protein of u 97.6 0.00026 5.7E-09 64.7 8.0 88 133-220 19-124 (252)
146 KOG3109 Haloacid dehalogenase- 97.6 0.00074 1.6E-08 60.2 10.2 113 161-278 80-204 (244)
147 PRK10187 trehalose-6-phosphate 97.5 0.00019 4E-09 65.9 6.5 62 134-219 14-76 (266)
148 TIGR02244 HAD-IG-Ncltidse HAD 97.5 0.00038 8.1E-09 66.4 8.7 100 176-278 183-322 (343)
149 COG5083 SMP2 Uncharacterized p 97.5 0.00029 6.2E-09 68.3 7.7 121 134-270 375-511 (580)
150 KOG3040 Predicted sugar phosph 97.5 0.00049 1.1E-08 61.0 7.7 100 133-270 6-106 (262)
151 KOG3085 Predicted hydrolase (H 97.4 0.0002 4.3E-09 64.8 5.3 102 177-283 113-217 (237)
152 TIGR02471 sucr_syn_bact_C sucr 97.4 0.0003 6.4E-09 62.8 6.5 53 137-220 2-54 (236)
153 COG4359 Uncharacterized conser 97.4 0.0006 1.3E-08 59.3 7.6 95 175-273 71-179 (220)
154 KOG2116 Protein involved in pl 97.4 0.00087 1.9E-08 67.7 9.9 120 135-270 531-667 (738)
155 PLN02423 phosphomannomutase 97.4 0.0003 6.6E-09 63.7 6.1 44 133-203 5-49 (245)
156 COG5663 Uncharacterized conser 97.3 0.00069 1.5E-08 58.0 7.0 129 136-279 8-161 (194)
157 COG4996 Predicted phosphatase 97.2 0.0012 2.5E-08 54.6 6.6 117 136-263 2-126 (164)
158 TIGR01522 ATPase-IIA2_Ca golgi 97.0 0.0032 6.9E-08 67.1 10.2 92 175-270 526-634 (884)
159 PLN03017 trehalose-phosphatase 97.0 0.0022 4.8E-08 61.6 7.7 52 131-204 108-159 (366)
160 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.0 0.00031 6.6E-09 63.2 1.5 96 178-277 139-239 (242)
161 PRK11033 zntA zinc/cadmium/mer 96.9 0.0031 6.6E-08 66.0 8.7 80 175-270 566-645 (741)
162 PF05152 DUF705: Protein of un 96.8 0.0071 1.5E-07 56.0 9.1 73 132-230 120-192 (297)
163 PF03031 NIF: NLI interacting 96.8 0.0019 4E-08 54.1 5.0 119 135-268 1-121 (159)
164 PLN02151 trehalose-phosphatase 96.8 0.0038 8.3E-08 59.7 7.1 62 129-215 93-154 (354)
165 PRK14501 putative bifunctional 96.7 0.0028 6E-08 66.1 6.3 63 132-218 490-553 (726)
166 PRK10671 copA copper exporting 96.7 0.007 1.5E-07 64.1 8.9 82 175-270 648-729 (834)
167 COG2217 ZntA Cation transport 96.6 0.0047 1E-07 64.2 7.3 80 175-268 535-614 (713)
168 TIGR00685 T6PP trehalose-phosp 96.6 0.0037 8.1E-08 56.3 5.7 50 133-203 2-52 (244)
169 COG1877 OtsB Trehalose-6-phosp 96.6 0.0046 1E-07 57.0 6.2 61 131-215 15-76 (266)
170 PLN02580 trehalose-phosphatase 96.5 0.0067 1.5E-07 58.7 7.1 62 130-216 115-176 (384)
171 TIGR01497 kdpB K+-transporting 96.5 0.014 3.1E-07 60.4 9.9 80 175-268 444-523 (675)
172 PLN02382 probable sucrose-phos 96.4 0.011 2.4E-07 57.7 8.1 65 131-221 6-70 (413)
173 COG4087 Soluble P-type ATPase 96.4 0.016 3.5E-07 48.0 7.6 81 175-268 28-108 (152)
174 PRK14010 potassium-transportin 96.4 0.019 4.1E-07 59.5 9.9 80 175-268 439-518 (673)
175 TIGR01517 ATPase-IIB_Ca plasma 96.4 0.013 2.7E-07 63.0 8.7 90 175-268 577-683 (941)
176 TIGR01106 ATPase-IIC_X-K sodiu 96.3 0.023 5E-07 61.4 10.3 90 175-268 566-698 (997)
177 PLN02205 alpha,alpha-trehalose 96.3 0.0087 1.9E-07 63.5 6.8 58 133-216 595-653 (854)
178 TIGR01647 ATPase-IIIA_H plasma 96.2 0.016 3.4E-07 60.9 8.4 89 175-268 440-549 (755)
179 COG3769 Predicted hydrolase (H 96.1 0.012 2.6E-07 52.7 5.9 57 134-220 7-63 (274)
180 PRK01122 potassium-transportin 96.1 0.033 7.2E-07 57.8 9.7 80 175-268 443-522 (679)
181 TIGR01116 ATPase-IIA1_Ca sarco 96.0 0.032 7E-07 59.8 9.8 92 175-270 535-647 (917)
182 TIGR02245 HAD_IIID1 HAD-superf 96.0 0.017 3.8E-07 50.8 6.3 70 126-219 13-83 (195)
183 TIGR01452 PGP_euk phosphoglyco 96.0 0.0029 6.3E-08 58.2 1.4 97 178-278 144-246 (279)
184 PF05116 S6PP: Sucrose-6F-phos 95.9 0.013 2.8E-07 53.2 5.2 62 134-224 2-63 (247)
185 TIGR01524 ATPase-IIIB_Mg magne 95.9 0.05 1.1E-06 58.0 10.1 89 175-268 513-617 (867)
186 PRK10517 magnesium-transportin 95.8 0.03 6.5E-07 60.0 8.0 89 175-268 548-652 (902)
187 KOG1618 Predicted phosphatase 95.7 0.031 6.8E-07 52.6 7.0 61 133-220 34-99 (389)
188 TIGR01523 ATPase-IID_K-Na pota 95.7 0.038 8.2E-07 60.1 8.6 90 175-268 644-760 (1053)
189 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.7 0.0037 7.9E-08 57.0 0.6 98 179-280 122-225 (257)
190 PRK15122 magnesium-transportin 95.6 0.067 1.5E-06 57.3 10.0 89 175-268 548-652 (903)
191 PF06189 5-nucleotidase: 5'-nu 95.6 0.036 7.8E-07 50.8 6.6 127 133-280 120-259 (264)
192 PF02358 Trehalose_PPase: Treh 95.1 0.033 7.2E-07 49.8 4.8 45 138-203 1-46 (235)
193 KOG0207 Cation transport ATPas 94.9 0.1 2.2E-06 55.0 8.3 100 132-268 701-800 (951)
194 KOG0202 Ca2+ transporting ATPa 94.6 0.15 3.3E-06 53.5 8.7 90 175-268 582-692 (972)
195 TIGR01494 ATPase_P-type ATPase 94.5 0.19 4.1E-06 50.1 9.1 77 175-268 345-421 (499)
196 PLN03063 alpha,alpha-trehalose 94.4 0.091 2E-06 55.6 6.6 66 132-218 505-571 (797)
197 PLN03064 alpha,alpha-trehalose 94.3 0.1 2.2E-06 55.9 6.8 73 132-219 589-662 (934)
198 COG0474 MgtA Cation transport 94.2 0.23 5E-06 53.4 9.3 90 175-268 545-653 (917)
199 PF10307 DUF2410: Hypothetical 94.0 0.47 1E-05 41.9 9.3 87 181-268 58-148 (197)
200 COG4229 Predicted enolase-phos 93.3 0.29 6.3E-06 42.9 6.6 98 175-279 101-204 (229)
201 KOG2134 Polynucleotide kinase 92.8 0.26 5.6E-06 47.6 6.1 76 131-220 72-156 (422)
202 PLN02177 glycerol-3-phosphate 92.7 1.4 3E-05 44.3 11.5 29 188-220 118-147 (497)
203 TIGR01657 P-ATPase-V P-type AT 92.7 0.61 1.3E-05 50.9 9.7 43 175-220 654-696 (1054)
204 PF13242 Hydrolase_like: HAD-h 91.3 0.17 3.7E-06 37.0 2.5 46 234-280 3-50 (75)
205 COG3882 FkbH Predicted enzyme 89.8 1.8 3.9E-05 43.2 8.7 116 130-266 218-340 (574)
206 PRK10530 pyridoxal phosphate ( 87.9 1.2 2.6E-05 40.0 5.8 96 178-280 138-242 (272)
207 KOG2470 Similar to IMP-GMP spe 87.5 0.87 1.9E-05 43.7 4.7 27 179-205 242-268 (510)
208 TIGR01457 HAD-SF-IIA-hyp2 HAD- 86.9 0.27 5.9E-06 44.5 1.0 48 232-280 175-224 (249)
209 PLN02499 glycerol-3-phosphate 86.1 1.6 3.5E-05 43.7 6.0 33 185-221 101-134 (498)
210 KOG2961 Predicted hydrolase (H 85.5 7.4 0.00016 33.3 8.7 104 133-270 42-157 (190)
211 KOG1605 TFIIF-interacting CTD 84.9 0.15 3.2E-06 47.0 -1.9 94 129-229 84-181 (262)
212 PF09949 DUF2183: Uncharacteri 84.8 4.2 9.1E-05 32.0 6.6 72 195-267 1-79 (100)
213 PLN02645 phosphoglycolate phos 84.3 0.33 7.2E-06 45.4 0.2 44 234-278 229-274 (311)
214 KOG3189 Phosphomannomutase [Li 81.5 4 8.6E-05 36.4 5.8 43 134-203 11-53 (252)
215 TIGR02463 MPGP_rel mannosyl-3- 81.4 5.4 0.00012 34.7 6.8 26 254-279 196-221 (221)
216 TIGR01652 ATPase-Plipid phosph 80.9 7.7 0.00017 42.5 9.1 30 175-204 629-658 (1057)
217 PRK00192 mannosyl-3-phosphogly 80.4 4.3 9.2E-05 36.9 6.0 83 189-280 144-234 (273)
218 PLN03190 aminophospholipid tra 80.4 8.5 0.00018 42.8 9.2 30 175-204 724-753 (1178)
219 PF00702 Hydrolase: haloacid d 80.2 0.94 2E-05 38.7 1.5 24 243-266 134-157 (215)
220 TIGR01460 HAD-SF-IIA Haloacid 79.0 1.7 3.6E-05 38.9 2.8 25 254-278 207-233 (236)
221 PF10137 TIR-like: Predicted n 76.0 13 0.00029 30.3 7.0 63 195-263 1-63 (125)
222 PF08139 LPAM_1: Prokaryotic m 75.3 2.8 6.1E-05 24.7 2.0 16 19-34 10-25 (25)
223 PF05822 UMPH-1: Pyrimidine 5' 74.9 15 0.00032 33.6 7.7 103 162-270 75-196 (246)
224 KOG0204 Calcium transporting A 74.5 10 0.00022 40.5 7.3 100 165-268 624-753 (1034)
225 TIGR01487 SPP-like sucrose-pho 74.2 7.2 0.00016 33.9 5.4 27 255-281 165-191 (215)
226 TIGR01456 CECR5 HAD-superfamil 72.3 4.7 0.0001 37.9 4.0 25 254-278 264-290 (321)
227 COG2216 KdpB High-affinity K+ 70.3 19 0.00042 36.5 7.8 79 175-268 445-524 (681)
228 PRK10444 UMP phosphatase; Prov 69.4 5.6 0.00012 36.1 3.7 47 232-279 171-219 (248)
229 KOG4549 Magnesium-dependent ph 66.8 18 0.00039 30.0 5.7 79 133-220 4-85 (144)
230 COG5610 Predicted hydrolase (H 65.0 26 0.00055 35.2 7.3 91 177-270 99-192 (635)
231 PF05761 5_nucleotid: 5' nucle 64.5 8.1 0.00018 38.4 4.0 38 179-216 185-222 (448)
232 COG4502 5'(3')-deoxyribonucleo 62.1 14 0.0003 31.3 4.3 54 175-229 66-122 (180)
233 KOG0203 Na+/K+ ATPase, alpha s 61.1 64 0.0014 34.8 9.8 58 132-204 560-617 (1019)
234 TIGR01485 SPP_plant-cyano sucr 61.1 29 0.00062 30.9 6.7 29 253-281 183-212 (249)
235 cd06591 GH31_xylosidase_XylS X 58.5 25 0.00055 33.0 6.0 24 177-200 63-86 (319)
236 TIGR02468 sucrsPsyn_pln sucros 56.4 38 0.00083 37.3 7.6 43 182-227 789-837 (1050)
237 PF11359 gpUL132: Glycoprotein 55.6 18 0.0004 32.3 4.2 25 11-35 57-81 (235)
238 cd06595 GH31_xylosidase_XylS-l 53.5 27 0.00059 32.3 5.3 25 177-201 71-95 (292)
239 PF14336 DUF4392: Domain of un 53.1 58 0.0013 30.4 7.4 44 176-221 59-102 (291)
240 PF04007 DUF354: Protein of un 52.7 32 0.0007 32.8 5.8 37 180-220 14-50 (335)
241 COG0647 NagD Predicted sugar p 52.4 13 0.00027 34.5 2.8 24 255-278 209-234 (269)
242 cd06416 GH25_Lys1-like Lys-1 i 52.1 44 0.00096 28.8 6.1 68 114-204 67-134 (196)
243 smart00851 MGS MGS-like domain 51.9 25 0.00054 26.4 4.0 31 182-220 2-32 (90)
244 cd06598 GH31_transferase_CtsZ 51.6 41 0.00088 31.5 6.2 43 177-219 67-109 (317)
245 PF13798 PCYCGC: Protein of un 50.3 8.5 0.00018 32.8 1.2 19 20-38 2-20 (158)
246 cd05008 SIS_GlmS_GlmD_1 SIS (S 49.8 22 0.00048 27.8 3.6 26 179-204 59-84 (126)
247 cd05014 SIS_Kpsf KpsF-like pro 48.4 24 0.00052 27.7 3.6 28 178-205 59-86 (128)
248 COG3065 Slp Starvation-inducib 48.4 8 0.00017 33.7 0.8 55 19-86 10-65 (191)
249 cd02072 Glm_B12_BD B12 binding 47.8 1.6E+02 0.0034 24.2 9.3 81 182-266 39-122 (128)
250 PF13701 DDE_Tnp_1_4: Transpos 47.4 1.4E+02 0.0031 29.5 9.6 89 132-220 137-243 (448)
251 cd05013 SIS_RpiR RpiR-like pro 47.0 27 0.00058 27.3 3.7 25 180-204 74-98 (139)
252 COG5510 Predicted small secret 46.5 23 0.0005 23.6 2.6 17 16-32 6-22 (44)
253 PRK13762 tRNA-modifying enzyme 46.1 1.4E+02 0.0031 28.1 9.0 39 177-219 142-180 (322)
254 PRK02261 methylaspartate mutas 45.8 1.7E+02 0.0036 24.0 9.0 81 182-266 43-126 (137)
255 PF01380 SIS: SIS domain SIS d 45.1 31 0.00067 26.9 3.8 25 180-204 67-91 (131)
256 COG1184 GCD2 Translation initi 45.1 45 0.00097 31.5 5.3 41 181-221 131-173 (301)
257 COG2344 AT-rich DNA-binding pr 44.7 42 0.00091 29.8 4.7 45 176-221 129-173 (211)
258 PF00578 AhpC-TSA: AhpC/TSA fa 44.3 51 0.0011 25.3 4.9 40 178-220 44-83 (124)
259 cd00532 MGS-like MGS-like doma 42.9 47 0.001 26.0 4.4 34 179-220 11-44 (112)
260 TIGR03127 RuMP_HxlB 6-phospho 42.8 31 0.00067 29.1 3.6 28 178-205 84-111 (179)
261 cd01423 MGS_CPS_I_III Methylgl 42.6 1.6E+02 0.0035 22.9 7.7 34 179-220 12-45 (116)
262 cd01421 IMPCH Inosine monophos 42.4 36 0.00078 29.9 4.0 34 179-220 10-43 (187)
263 PRK10215 hypothetical protein; 42.3 18 0.00039 32.5 2.1 21 15-35 6-26 (218)
264 PF01740 STAS: STAS domain; I 41.8 80 0.0017 24.3 5.6 56 134-221 48-103 (117)
265 cd05710 SIS_1 A subgroup of th 41.8 35 0.00076 26.9 3.6 27 179-205 60-86 (120)
266 cd05017 SIS_PGI_PMI_1 The memb 41.7 37 0.00081 26.7 3.7 25 179-203 56-80 (119)
267 PF04312 DUF460: Protein of un 41.5 39 0.00084 28.2 3.8 33 182-216 65-97 (138)
268 cd06523 GH25_PlyB-like PlyB is 41.4 96 0.0021 26.4 6.5 60 112-203 65-125 (177)
269 cd01994 Alpha_ANH_like_IV This 41.2 1.1E+02 0.0023 26.7 6.9 65 181-256 76-141 (194)
270 TIGR01370 cysRS possible cyste 41.0 1.2E+02 0.0026 28.7 7.6 27 181-207 192-218 (315)
271 PF02402 Lysis_col: Lysis prot 40.8 12 0.00027 25.0 0.6 15 23-37 10-24 (46)
272 TIGR00236 wecB UDP-N-acetylglu 40.8 1.1E+02 0.0023 28.6 7.3 84 182-269 16-103 (365)
273 PRK10838 spr outer membrane li 40.7 27 0.00058 30.7 2.9 22 16-37 10-31 (190)
274 COG2086 FixA Electron transfer 40.5 2.3E+02 0.005 26.1 9.2 85 182-271 42-129 (260)
275 PRK12702 mannosyl-3-phosphogly 40.3 87 0.0019 29.6 6.4 28 255-282 228-255 (302)
276 PF09334 tRNA-synt_1g: tRNA sy 40.0 43 0.00092 32.6 4.5 65 184-253 27-112 (391)
277 PRK12342 hypothetical protein; 39.9 2.9E+02 0.0064 25.2 9.7 80 188-270 46-126 (254)
278 COG0381 WecB UDP-N-acetylgluco 39.9 93 0.002 30.4 6.7 86 183-269 20-109 (383)
279 cd06592 GH31_glucosidase_KIAA1 39.7 85 0.0018 29.2 6.3 24 178-201 68-91 (303)
280 KOG3128 Uncharacterized conser 39.7 1.3E+02 0.0028 28.0 7.1 102 90-217 72-175 (298)
281 PF06415 iPGM_N: BPG-independe 39.3 2.8E+02 0.0062 24.9 9.3 85 176-260 10-103 (223)
282 PF02254 TrkA_N: TrkA-N domain 39.2 1.7E+02 0.0037 22.2 7.8 24 182-205 10-33 (116)
283 cd08197 DOIS 2-deoxy-scyllo-in 39.1 2.8E+02 0.0062 26.4 10.0 89 189-280 18-118 (355)
284 cd08198 DHQS-like2 Dehydroquin 38.5 1.4E+02 0.0031 28.8 7.8 88 193-280 30-133 (369)
285 PHA00407 phage lambda Rz1-like 38.1 34 0.00073 25.7 2.6 21 17-37 34-54 (84)
286 cd08199 EEVS 2-epi-5-epi-valio 38.0 2.8E+02 0.0061 26.4 9.7 85 193-280 26-122 (354)
287 cd06415 GH25_Cpl1-like Cpl-1 l 37.9 87 0.0019 27.0 5.8 66 112-203 65-131 (196)
288 PRK13792 lysozyme inhibitor; P 37.8 18 0.00039 29.7 1.3 20 18-37 5-24 (127)
289 TIGR03352 VI_chp_3 type VI sec 37.8 28 0.00061 29.1 2.5 16 20-35 4-19 (146)
290 PF13627 LPAM_2: Prokaryotic l 37.5 24 0.00052 20.5 1.4 17 19-35 2-18 (24)
291 PF00737 PsbH: Photosystem II 37.5 47 0.001 23.0 3.1 24 12-35 26-49 (52)
292 cd05006 SIS_GmhA Phosphoheptos 37.5 43 0.00093 28.2 3.7 27 178-204 113-139 (177)
293 PF06474 MLTD_N: MltD lipid at 37.2 25 0.00055 22.2 1.6 12 23-34 23-34 (34)
294 TIGR01486 HAD-SF-IIB-MPGP mann 37.1 1.2E+02 0.0026 27.0 6.7 29 253-281 194-222 (256)
295 TIGR00441 gmhA phosphoheptose 37.0 45 0.00098 27.6 3.7 26 179-204 92-117 (154)
296 PRK10781 rcsF outer membrane l 36.5 18 0.00039 30.0 1.1 15 20-34 4-18 (133)
297 PF09198 T4-Gluco-transf: Bact 36.5 12 0.00027 23.6 0.1 14 83-96 9-22 (38)
298 TIGR01501 MthylAspMutase methy 36.2 2.5E+02 0.0053 23.2 9.2 82 181-266 40-124 (134)
299 PF02142 MGS: MGS-like domain 35.8 54 0.0012 24.8 3.7 32 181-220 1-32 (95)
300 cd06525 GH25_Lyc-like Lyc mura 35.6 46 0.001 28.4 3.6 62 116-204 66-128 (184)
301 cd05005 SIS_PHI Hexulose-6-pho 35.5 47 0.001 28.0 3.6 28 178-205 87-114 (179)
302 PRK10329 glutaredoxin-like pro 35.3 1.7E+02 0.0037 21.5 6.3 30 195-225 2-31 (81)
303 PF07511 DUF1525: Protein of u 35.3 1E+02 0.0022 24.8 5.3 60 78-140 30-90 (114)
304 PF06437 ISN1: IMP-specific 5' 35.3 2.6E+02 0.0056 27.5 8.8 47 133-203 146-192 (408)
305 PRK13937 phosphoheptose isomer 34.6 49 0.0011 28.4 3.6 27 178-204 118-144 (188)
306 cd06414 GH25_LytC-like The Lyt 34.6 92 0.002 26.7 5.4 69 112-203 68-136 (191)
307 TIGR01482 SPP-subfamily Sucros 34.5 31 0.00066 29.8 2.3 28 254-281 166-193 (225)
308 TIGR02886 spore_II_AA anti-sig 34.3 2E+02 0.0044 21.6 6.9 39 179-222 57-95 (106)
309 PF05624 LSR: Lipolysis stimul 34.3 47 0.001 22.5 2.6 17 10-26 6-22 (49)
310 COG2044 Predicted peroxiredoxi 33.9 48 0.001 27.0 3.2 51 134-203 35-85 (120)
311 TIGR03757 conj_TIGR03757 integ 33.6 1.1E+02 0.0024 24.6 5.2 60 78-140 31-91 (113)
312 cd08183 Fe-ADH2 Iron-containin 33.6 2.6E+02 0.0055 26.7 8.7 74 189-268 18-92 (374)
313 cd03018 PRX_AhpE_like Peroxire 33.6 1.2E+02 0.0025 24.2 5.5 40 178-220 47-86 (149)
314 cd06599 GH31_glycosidase_Aec37 33.2 1.3E+02 0.0028 28.1 6.5 25 177-201 70-94 (317)
315 cd04795 SIS SIS domain. SIS (S 33.1 56 0.0012 23.4 3.3 22 179-200 60-81 (87)
316 cd08182 HEPD Hydroxyethylphosp 33.1 2.8E+02 0.0062 26.3 8.9 78 187-269 16-95 (367)
317 PF03033 Glyco_transf_28: Glyc 32.9 61 0.0013 25.5 3.7 34 181-220 14-47 (139)
318 PRK06203 aroB 3-dehydroquinate 32.8 4.7E+02 0.01 25.4 10.6 88 193-280 42-145 (389)
319 cd07043 STAS_anti-anti-sigma_f 32.6 1.9E+02 0.0042 20.9 6.3 39 178-221 55-93 (99)
320 COG0678 AHP1 Peroxiredoxin [Po 32.2 3.2E+02 0.007 23.4 7.9 70 132-231 36-106 (165)
321 cd03012 TlpA_like_DipZ_like Tl 32.2 78 0.0017 24.8 4.2 45 178-223 41-88 (126)
322 cd01424 MGS_CPS_II Methylglyox 31.7 80 0.0017 24.4 4.1 33 180-220 13-45 (110)
323 PF05510 Sarcoglycan_2: Sarcog 31.7 75 0.0016 31.1 4.6 40 3-44 281-320 (386)
324 KOG0183 20S proteasome, regula 31.7 34 0.00074 30.7 2.1 20 64-83 82-101 (249)
325 cd03017 PRX_BCP Peroxiredoxin 31.7 1.3E+02 0.0029 23.5 5.6 42 178-223 42-83 (140)
326 PRK10175 lipoprotein; Provisio 31.7 25 0.00054 26.2 1.1 18 18-35 2-19 (75)
327 COG4851 CamS Protein involved 31.4 32 0.00069 32.5 2.0 18 18-35 5-22 (382)
328 cd07041 STAS_RsbR_RsbS_like Su 30.7 2.4E+02 0.0051 21.3 8.0 57 133-221 40-96 (109)
329 cd00861 ProRS_anticodon_short 30.5 1.7E+02 0.0038 21.3 5.7 15 249-263 51-65 (94)
330 PF13477 Glyco_trans_4_2: Glyc 30.4 2.5E+02 0.0053 21.8 6.9 74 181-263 12-85 (139)
331 COG0695 GrxC Glutaredoxin and 30.0 2.2E+02 0.0049 20.8 6.6 57 196-262 3-62 (80)
332 PF13580 SIS_2: SIS domain; PD 30.0 56 0.0012 26.5 3.1 22 180-201 117-138 (138)
333 COG0279 GmhA Phosphoheptose is 29.8 68 0.0015 27.8 3.5 26 180-205 123-148 (176)
334 KOG3040 Predicted sugar phosph 29.6 41 0.00088 30.4 2.2 44 234-278 180-225 (262)
335 cd06522 GH25_AtlA-like AtlA is 29.5 1.8E+02 0.0038 25.0 6.3 64 112-203 68-133 (192)
336 PRK04531 acetylglutamate kinas 29.5 2E+02 0.0043 28.1 7.3 70 118-221 21-90 (398)
337 KOG0323 TFIIF-interacting CTD 29.4 2.3E+02 0.0049 29.7 7.8 129 104-233 112-256 (635)
338 smart00266 CAD Domains present 29.4 34 0.00075 25.5 1.5 20 134-153 38-57 (74)
339 PRK10081 entericidin B membran 29.2 60 0.0013 22.2 2.5 16 17-32 7-22 (48)
340 PRK01158 phosphoglycolate phos 29.2 42 0.0009 29.1 2.3 27 254-280 174-200 (230)
341 PRK13938 phosphoheptose isomer 29.2 69 0.0015 28.0 3.7 26 179-204 126-151 (196)
342 TIGR02471 sucr_syn_bact_C sucr 29.1 57 0.0012 28.6 3.2 27 255-281 177-203 (236)
343 cd06539 CIDE_N_A CIDE_N domain 29.1 41 0.00089 25.3 1.9 21 133-153 39-59 (78)
344 TIGR01210 conserved hypothetic 29.0 4.5E+02 0.0097 24.6 9.4 39 182-220 90-129 (313)
345 COG0143 MetG Methionyl-tRNA sy 28.6 1.3E+02 0.0028 30.9 6.0 67 182-253 31-118 (558)
346 COG0731 Fe-S oxidoreductases [ 28.5 82 0.0018 29.6 4.2 46 175-228 90-136 (296)
347 PF03193 DUF258: Protein of un 28.4 1.7E+02 0.0038 24.8 5.9 56 183-250 2-57 (161)
348 PRK10781 rcsF outer membrane l 27.8 48 0.001 27.5 2.2 22 13-34 3-24 (133)
349 cd06537 CIDE_N_B CIDE_N domain 27.5 45 0.00098 25.3 1.9 21 133-153 38-58 (81)
350 PRK14021 bifunctional shikimat 27.4 4.1E+02 0.0089 27.0 9.3 90 188-280 204-303 (542)
351 PF12694 MoCo_carrier: Putativ 27.3 1.1E+02 0.0024 25.8 4.3 44 177-220 74-117 (145)
352 PRK02624 psbH photosystem II r 27.3 72 0.0016 22.9 2.7 24 12-35 29-52 (64)
353 smart00481 POLIIIAc DNA polyme 27.2 1.7E+02 0.0037 20.2 4.9 39 182-220 17-56 (67)
354 cd08181 PPD-like 1,3-propanedi 27.0 4.6E+02 0.0099 24.8 9.2 77 187-268 19-100 (357)
355 PF12092 DUF3568: Protein of u 26.6 49 0.0011 27.3 2.1 17 16-32 3-19 (131)
356 PF13478 XdhC_C: XdhC Rossmann 26.6 2.2E+02 0.0048 23.3 6.1 73 182-261 10-89 (136)
357 cd01615 CIDE_N CIDE_N domain, 26.5 47 0.001 25.0 1.8 22 132-153 38-59 (78)
358 cd06600 GH31_MGAM-like This fa 26.5 1.3E+02 0.0027 28.3 5.1 23 178-200 62-84 (317)
359 TIGR01691 enolase-ppase 2,3-di 26.3 41 0.00089 30.0 1.7 14 135-148 2-15 (220)
360 cd06524 GH25_YegX-like YegX is 26.3 1.5E+02 0.0032 25.4 5.2 63 116-203 70-133 (194)
361 PF06291 Lambda_Bor: Bor prote 26.2 45 0.00097 26.1 1.7 18 19-36 4-21 (97)
362 PRK00414 gmhA phosphoheptose i 26.1 83 0.0018 27.2 3.6 26 179-204 124-149 (192)
363 cd06259 YdcF-like YdcF-like. Y 26.1 3.4E+02 0.0075 21.7 7.9 77 186-266 27-108 (150)
364 PF05221 AdoHcyase: S-adenosyl 26.0 91 0.002 28.9 3.9 42 180-221 54-95 (268)
365 PRK09437 bcp thioredoxin-depen 25.8 2.3E+02 0.0049 22.8 6.1 41 179-223 50-90 (154)
366 PRK11548 outer membrane biogen 25.7 52 0.0011 26.1 2.1 16 20-35 8-23 (113)
367 PF07172 GRP: Glycine rich pro 25.6 66 0.0014 25.0 2.6 19 16-34 6-24 (95)
368 cd06536 CIDE_N_ICAD CIDE_N dom 25.6 53 0.0012 24.8 2.0 21 133-153 41-61 (80)
369 PRK13936 phosphoheptose isomer 25.6 87 0.0019 27.2 3.6 26 179-204 124-149 (197)
370 PF03345 DDOST_48kD: Oligosacc 25.5 1.6E+02 0.0035 29.1 5.9 73 182-262 14-87 (423)
371 TIGR00936 ahcY adenosylhomocys 25.5 1.2E+02 0.0025 29.9 4.8 45 178-222 41-85 (406)
372 TIGR02194 GlrX_NrdH Glutaredox 25.4 2.3E+02 0.005 19.8 5.3 24 200-224 5-28 (72)
373 COG3603 Uncharacterized conser 25.4 1.4E+02 0.003 24.5 4.4 24 180-203 77-101 (128)
374 PRK10886 DnaA initiator-associ 25.4 90 0.002 27.3 3.7 26 179-204 122-147 (196)
375 cd06603 GH31_GANC_GANAB_alpha 25.4 1.2E+02 0.0026 28.6 4.9 25 177-201 61-85 (339)
376 PRK10658 putative alpha-glucos 25.3 1.7E+02 0.0037 30.6 6.3 43 177-219 322-364 (665)
377 TIGR00377 ant_ant_sig anti-ant 25.3 2.7E+02 0.0058 20.8 6.0 57 133-221 42-98 (108)
378 cd06538 CIDE_N_FSP27 CIDE_N do 25.3 51 0.0011 24.9 1.8 21 133-153 38-58 (79)
379 KOG0210 P-type ATPase [Inorgan 25.1 2.9E+02 0.0062 29.6 7.6 28 176-203 657-684 (1051)
380 PF00070 Pyr_redox: Pyridine n 25.0 2.1E+02 0.0045 20.4 5.1 39 182-220 11-56 (80)
381 cd00401 AdoHcyase S-adenosyl-L 24.9 1.2E+02 0.0027 29.8 4.9 44 179-222 46-89 (413)
382 COG5633 Predicted periplasmic 24.9 61 0.0013 26.4 2.3 21 22-42 7-27 (123)
383 PF12911 OppC_N: N-terminal TM 24.8 89 0.0019 21.0 2.9 18 12-29 18-35 (56)
384 PRK05476 S-adenosyl-L-homocyst 24.6 1E+02 0.0022 30.5 4.2 44 178-221 57-100 (425)
385 KOG3085 Predicted hydrolase (H 24.6 41 0.00089 30.6 1.4 15 134-148 7-21 (237)
386 TIGR03590 PseG pseudaminic aci 24.6 4.7E+02 0.01 23.7 8.5 36 182-220 20-55 (279)
387 cd02875 GH18_chitobiase Chitob 24.5 2.5E+02 0.0054 26.8 6.8 77 183-260 67-159 (358)
388 PRK11251 DNA-binding transcrip 24.5 59 0.0013 26.0 2.1 14 135-148 80-93 (109)
389 PRK02998 prsA peptidylprolyl i 24.4 62 0.0013 29.9 2.6 22 16-37 6-27 (283)
390 KOG1014 17 beta-hydroxysteroid 24.4 2.5E+02 0.0055 26.6 6.6 37 184-220 64-100 (312)
391 cd02971 PRX_family Peroxiredox 24.0 2E+02 0.0044 22.4 5.3 41 179-223 42-83 (140)
392 TIGR01357 aroB 3-dehydroquinat 24.0 5.8E+02 0.013 23.9 9.3 85 193-280 20-115 (344)
393 TIGR03679 arCOG00187 arCOG0018 23.7 3.8E+02 0.0082 23.6 7.4 63 182-255 75-138 (218)
394 COG0124 HisS Histidyl-tRNA syn 23.7 7.2E+02 0.016 24.6 10.0 114 139-263 258-396 (429)
395 CHL00066 psbH photosystem II p 23.6 89 0.0019 23.2 2.7 23 12-34 41-63 (73)
396 TIGR00752 slp outer membrane l 23.5 41 0.0009 29.3 1.2 13 22-34 8-20 (182)
397 TIGR02638 lactal_redase lactal 23.3 5.3E+02 0.012 24.6 8.9 76 187-267 22-102 (379)
398 PF13905 Thioredoxin_8: Thiore 23.3 2.9E+02 0.0064 19.9 5.8 46 177-225 18-64 (95)
399 COG1501 Alpha-glucosidases, fa 23.3 1.9E+02 0.004 31.0 6.1 44 176-219 317-360 (772)
400 KOG0541 Alkyl hydroperoxide re 23.1 1.9E+02 0.0042 24.9 5.0 62 132-221 42-104 (171)
401 PRK11189 lipoprotein NlpI; Pro 22.9 64 0.0014 29.7 2.4 19 19-37 6-24 (296)
402 PHA02867 C-type lectin protein 22.8 37 0.0008 29.2 0.7 33 1-35 1-39 (167)
403 cd02874 GH18_CFLE_spore_hydrol 22.8 3.8E+02 0.0081 24.6 7.6 75 184-258 49-143 (313)
404 PF03808 Glyco_tran_WecB: Glyc 22.6 4.7E+02 0.01 22.0 8.4 39 178-217 33-71 (172)
405 cd08185 Fe-ADH1 Iron-containin 22.5 5.6E+02 0.012 24.4 8.9 77 187-268 19-100 (380)
406 KOG2900 Biotin synthase [Coenz 22.5 2.3E+02 0.005 26.4 5.7 92 174-268 148-247 (380)
407 cd08176 LPO Lactadehyde:propan 22.5 5.7E+02 0.012 24.3 9.0 78 185-267 19-101 (377)
408 PRK02947 hypothetical protein; 22.4 1.1E+02 0.0023 27.7 3.7 25 180-204 120-144 (246)
409 TIGR02244 HAD-IG-Ncltidse HAD 22.4 75 0.0016 30.5 2.8 16 132-147 10-25 (343)
410 PF09345 DUF1987: Domain of un 22.3 2.8E+02 0.0061 21.6 5.6 69 104-199 14-82 (99)
411 PRK05301 pyrroloquinoline quin 22.2 6.6E+02 0.014 23.7 9.3 41 179-220 76-116 (378)
412 PF01713 Smr: Smr domain; Int 22.2 2E+02 0.0044 20.9 4.6 43 177-220 10-58 (83)
413 PRK10540 lipoprotein; Provisio 22.1 83 0.0018 23.2 2.4 18 17-34 9-26 (72)
414 TIGR00355 purH phosphoribosyla 22.0 1.1E+02 0.0024 31.0 3.9 34 179-220 10-43 (511)
415 PF08269 Cache_2: Cache domain 21.9 70 0.0015 24.0 2.1 34 114-148 38-71 (95)
416 PF00462 Glutaredoxin: Glutare 21.9 2.4E+02 0.0053 18.8 4.7 29 198-227 3-31 (60)
417 PRK11557 putative DNA-binding 21.8 1E+02 0.0022 27.8 3.5 28 178-205 187-214 (278)
418 cd06589 GH31 The enzymes of gl 21.7 2.3E+02 0.005 25.6 5.8 44 178-221 64-109 (265)
419 TIGR00676 fadh2 5,10-methylene 21.6 6.2E+02 0.013 23.0 9.2 78 181-264 16-99 (272)
420 PF07436 Curto_V3: Curtovirus 21.4 71 0.0015 23.9 1.9 17 19-35 8-24 (87)
421 TIGR03063 srtB_target sortase 21.4 1.2E+02 0.0026 18.5 2.6 16 14-29 10-25 (29)
422 PRK13717 conjugal transfer pro 21.3 78 0.0017 26.1 2.3 62 132-202 43-104 (128)
423 PF08282 Hydrolase_3: haloacid 21.2 54 0.0012 28.0 1.5 27 254-280 203-229 (254)
424 TIGR02826 RNR_activ_nrdG3 anae 21.2 2.1E+02 0.0045 23.8 5.0 35 180-216 75-109 (147)
425 PF11057 Cortexin: Cortexin of 21.2 99 0.0022 23.2 2.6 20 16-35 32-51 (81)
426 PLN00055 photosystem II reacti 21.1 1.1E+02 0.0023 22.8 2.7 24 12-35 41-64 (73)
427 COG0300 DltE Short-chain dehyd 21.1 5.4E+02 0.012 23.7 8.1 38 183-220 20-57 (265)
428 PRK10624 L-1,2-propanediol oxi 21.0 6.6E+02 0.014 24.0 9.1 76 187-267 23-103 (382)
429 PF01183 Glyco_hydro_25: Glyco 20.8 1.3E+02 0.0029 25.2 3.8 67 113-203 63-130 (181)
430 TIGR00099 Cof-subfamily Cof su 20.8 77 0.0017 28.1 2.4 27 254-280 205-231 (256)
431 cd06601 GH31_lyase_GLase GLase 20.7 2.1E+02 0.0046 27.1 5.5 25 177-201 61-85 (332)
432 TIGR01163 rpe ribulose-phospha 20.6 5.2E+02 0.011 21.8 9.7 20 131-150 22-42 (210)
433 PRK09810 entericidin A; Provis 20.5 95 0.0021 20.5 2.1 10 25-34 12-21 (41)
434 PRK11337 DNA-binding transcrip 20.5 1.2E+02 0.0026 27.7 3.7 27 179-205 200-226 (292)
435 cd08189 Fe-ADH5 Iron-containin 20.5 6.8E+02 0.015 23.8 9.0 77 187-268 19-100 (374)
436 TIGR00815 sulP high affinity s 20.4 7.7E+02 0.017 25.0 9.8 39 178-221 511-549 (563)
437 PF13911 AhpC-TSA_2: AhpC/TSA 20.3 3E+02 0.0065 21.1 5.5 40 185-229 5-44 (115)
438 PRK14719 bifunctional RNAse/5- 20.3 5.8E+02 0.013 24.6 8.4 76 179-263 29-106 (360)
439 smart00463 SMR Small MutS-rela 20.3 2.3E+02 0.005 20.4 4.5 28 177-204 13-42 (80)
440 PRK00881 purH bifunctional pho 20.2 1.3E+02 0.0028 30.6 4.0 34 179-220 14-47 (513)
441 smart00540 LEM in nuclear memb 20.2 1.1E+02 0.0024 20.4 2.5 32 183-217 9-40 (44)
442 PRK15396 murein lipoprotein; P 20.1 1E+02 0.0022 23.2 2.5 10 26-35 15-24 (78)
443 PRK09423 gldA glycerol dehydro 20.1 6.3E+02 0.014 24.0 8.7 87 188-280 24-116 (366)
444 COG1964 Predicted Fe-S oxidore 20.1 7.4E+02 0.016 24.9 9.1 78 176-257 121-205 (475)
No 1
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=100.00 E-value=1.6e-72 Score=502.62 Aligned_cols=221 Identities=55% Similarity=1.005 Sum_probs=214.9
Q ss_pred hhhhhhccchhHHHHhHhhcCCCCccCchhhHHHHHhcccCCCccccHHHHHHHHHHhhhhhhccCCCccEEEEecCCCc
Q 023192 66 LNEEVKLQCTTWRFAVEANNLNPWKTIPRECLEYVRDYMMGRGYGLDLERVSNEAGVYAKSVELRGDGKDAWIFDIDETL 145 (286)
Q Consensus 66 ~~~~~~~~c~sw~~~ve~nn~~~~~~vP~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~~~~~~avVfDIDgTL 145 (286)
..+.++.||.|||++||+||+++|+|||++|++||++||+|+||.+|+++|+++|..|++++.+++||++|||||||+|+
T Consensus 9 ~~~~~~~~c~swr~~ve~~n~~~~~~vp~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~ 88 (229)
T TIGR01675 9 KLSIDYAYCRSWRLGVETNNIRDWDTVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSLALSGDGMDAWIFDVDDTL 88 (229)
T ss_pred cccCCcCcchhhhhhhhhccccccccCcHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhccCCCCcEEEEcccccc
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceE
Q 023192 146 LSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKL 225 (286)
Q Consensus 146 l~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~L 225 (286)
|||.||++.++||+++|+++.|++|+..+.++++|++++++++|+++|++|+|+|||++.+|+.|.+||.++||++|++|
T Consensus 89 LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~L 168 (229)
T TIGR01675 89 LSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHL 168 (229)
T ss_pred ccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCCCCCcEEEecCCCCCCC
Q 023192 226 ILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSPMPSRSFKLPNPMYYIP 286 (286)
Q Consensus 226 ilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~~g~r~fkLPNp~Y~~~ 286 (286)
+||+.++.++++..||++.|++++++||+|+++|||||+||.|+++|.|+|||||||||||
T Consensus 169 iLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~G~~~~~RtFKLPNPmYyi~ 229 (229)
T TIGR01675 169 ILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYYVP 229 (229)
T ss_pred eecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhcCCCccCceeeCCCCcccCC
Confidence 9999777888899999999999999999999999999999999999999999999999997
No 2
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=100.00 E-value=4.6e-67 Score=474.84 Aligned_cols=215 Identities=42% Similarity=0.818 Sum_probs=204.2
Q ss_pred hhhhccchhHHHHhHhhcCCCCccCchhhHHHHHhcccCCCccccHHHHHHHHHHhhhhhhccCCCccEEEEecCCCccC
Q 023192 68 EEVKLQCTTWRFAVEANNLNPWKTIPRECLEYVRDYMMGRGYGLDLERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLS 147 (286)
Q Consensus 68 ~~~~~~c~sw~~~ve~nn~~~~~~vP~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~~~~~~avVfDIDgTLl~ 147 (286)
..++.||.|||++||+||+++|++||++|++||++||+||||.+|++.|+++|+.|++++.. ++++|||||||||++|
T Consensus 37 ~~~~~~c~swr~~vE~~n~~~w~~vP~~C~~~v~~Y~~ggqY~~D~~~v~~~a~~y~~~~~~--~~~dA~V~DIDET~Ls 114 (275)
T TIGR01680 37 RDPEVKCASWRLAVEAHNIFGFETIPEECVDATAEYIEGEQYRSDSKTVNQQAYFFARDLEV--HEKDTFLFNIDGTALS 114 (275)
T ss_pred cCCCCcccceeeeeeecccCCcccCcHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCcC--CCCCEEEEECcccccc
Confidence 35688999999999999999999999999999999999999999999999999999988765 4689999999999999
Q ss_pred CchhhhhhcCCCccCCHHHHH-HHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEE
Q 023192 148 NLPYYQEHGYGLEIFNPVEFD-KWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLI 226 (286)
Q Consensus 148 n~~~~~~~~~g~~~f~~~~~~-~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Li 226 (286)
|.||++.++||.++|+++.|+ +|+..+.+|++|++++|+++++++|++|+|||||++.+|++|++||+++||+.|++|+
T Consensus 115 N~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~Li 194 (275)
T TIGR01680 115 NIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLI 194 (275)
T ss_pred CHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceee
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCC-CCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCCCC-CcEEEecCCCCC
Q 023192 227 LRSSDD-HGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSPMP-SRSFKLPNPMYY 284 (286)
Q Consensus 227 lr~~~~-~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~~g-~r~fkLPNp~Y~ 284 (286)
||+.++ .+++++.||+..|++++++||+|+++|||||+||.|++.| .|+||||||||-
T Consensus 195 LR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGDq~sDl~G~~~g~~RtFKLPNP~~~ 254 (275)
T TIGR01680 195 LKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGDQWNDLKGEHRGAIRSFKLPNPCTT 254 (275)
T ss_pred ecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECCCHHhccCCCccCcceecCCCcccc
Confidence 998765 4567889999999999999999999999999999999986 799999999774
No 3
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=100.00 E-value=2.5e-53 Score=381.06 Aligned_cols=216 Identities=45% Similarity=0.741 Sum_probs=184.8
Q ss_pred hhhhhhccchhHHHHhHhhcCCCCccCchhhHHHHHhcccCCCccccHHHHHHHHHHhhhhhhccCCCccEEEEecCCCc
Q 023192 66 LNEEVKLQCTTWRFAVEANNLNPWKTIPRECLEYVRDYMMGRGYGLDLERVSNEAGVYAKSVELRGDGKDAWIFDIDETL 145 (286)
Q Consensus 66 ~~~~~~~~c~sw~~~ve~nn~~~~~~vP~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~~~~~~avVfDIDgTL 145 (286)
.......+|.||+++||+|| .+|.+ ++|++++.. |+++||.+|++.++.+|..|++.....+++++|||||||||+
T Consensus 8 ~~~~~~~~c~s~~~~~e~~~-~~~~~--~~~~~~~~~-~~~~q~~~e~~a~~~~a~~~a~~~~~~~~~~~avv~DIDeTv 83 (229)
T PF03767_consen 8 ALSTAALYCASWRLAVETNN-ANWTV--AECVEYVAD-VTWGQYSAEYKALVDQAYNYAKSRLDEADKPPAVVFDIDETV 83 (229)
T ss_dssp ----------TCCSSHHHHH-----H--HHHHHTTHH-HHHHHHEHHHHHHHHHHHHHHHHHHHHHTSEEEEEEESBTTT
T ss_pred hhhHHHhhhhhccchhhhcc-hHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhccCCCcEEEEECCccc
Confidence 45567889999999999999 99955 999999999 999999999999999999999888777799999999999999
Q ss_pred cCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceE
Q 023192 146 LSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKL 225 (286)
Q Consensus 146 l~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~L 225 (286)
|||.+|+..+.++...|+++.|++|+..+.++++||+++|+++++++|++|+|||||++.+|+.|++||+++|++.|+++
T Consensus 84 Lsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l 163 (229)
T PF03767_consen 84 LSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHL 163 (229)
T ss_dssp EEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCG
T ss_pred ccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchh
Confidence 99999999988888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC-CCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhcc----CCCCCcEEEecCCCCCC
Q 023192 226 ILRSSDD-HGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLG----SPMPSRSFKLPNPMYYI 285 (286)
Q Consensus 226 ilr~~~~-~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g----a~~g~r~fkLPNp~Y~~ 285 (286)
+||+..+ .++.+..||+..|++|++.||+|+++||||++||.| +..+.|+|+|||||||+
T Consensus 164 ~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~Ii~~iGD~~~D~~~~~~~~~~~~r~f~lPNp~Yg~ 228 (229)
T PF03767_consen 164 ILRPDKDPSKKSAVEYKSERRKEIEKKGYRIIANIGDQLSDFSGAKTAGARAERWFKLPNPMYGS 228 (229)
T ss_dssp EEEEESSTSS------SHHHHHHHHHTTEEEEEEEESSGGGCHCTHHHHHHHTTEEE-TTSSSSH
T ss_pred ccccccccccccccccchHHHHHHHHcCCcEEEEeCCCHHHhhcccccccccceEEEcCCCCCCC
Confidence 9999876 456788899999999999999999999999999999 45589999999999985
No 4
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=100.00 E-value=1.5e-33 Score=257.67 Aligned_cols=179 Identities=28% Similarity=0.375 Sum_probs=156.1
Q ss_pred HHHHhcccCCCccccHHHHHHHHHHhhhhh-hccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCC
Q 023192 98 EYVRDYMMGRGYGLDLERVSNEAGVYAKSV-ELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMS 176 (286)
Q Consensus 98 ~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~-~~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~ 176 (286)
.-+.+|.+++.|+.....+.+.|+.++... +...++++|||||||||+++|+||+..+.+++.+|+++.|++|+.....
T Consensus 38 ~~~~w~q~S~Ey~al~~q~~n~A~~~~~~~~~~~~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a 117 (266)
T TIGR01533 38 MSVAWMQRSAEYKALYLQAYNLAKMRLDNNLKKVKDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQA 117 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCC
Confidence 456789999999999999999999888543 3446788999999999999999999888888889999999999999999
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc--ceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW--DKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~--~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
+++||+.++++.|+++|++++|+|||++..++.|.++|+++|++.+ +.+++++.. . .|...|+.+. +||+
T Consensus 118 ~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~-~------~K~~rr~~I~-~~y~ 189 (266)
T TIGR01533 118 KPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDK-S------SKESRRQKVQ-KDYE 189 (266)
T ss_pred CcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCC-C------CcHHHHHHHH-hcCC
Confidence 9999999999999999999999999999999999999999999864 578888642 2 2556666664 5899
Q ss_pred EEEEEcCChhhhccC-------------------CCCCcEEEecCCCCC
Q 023192 255 ILGNSGDQWSDLLGS-------------------PMPSRSFKLPNPMYY 284 (286)
Q Consensus 255 i~~~IGDq~sDl~ga-------------------~~g~r~fkLPNp~Y~ 284 (286)
|+++|||+++||.+. .+|.+.|.||||||.
T Consensus 190 Ivl~vGD~~~Df~~~~~~~~~~~~r~~~v~~~~~~fG~~~i~lPNp~YG 238 (266)
T TIGR01533 190 IVLLFGDNLLDFDDFFYKDKESQDRQALVLQNQEKFGKKFIILPNPMYG 238 (266)
T ss_pred EEEEECCCHHHhhhhhccCcchHHHHHHHHHHHHHhCCCeEEecCCCCc
Confidence 999999999999663 169999999999996
No 5
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=99.94 E-value=7.4e-27 Score=206.94 Aligned_cols=151 Identities=27% Similarity=0.445 Sum_probs=129.9
Q ss_pred hhhccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchh
Q 023192 126 SVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEK 205 (286)
Q Consensus 126 ~~~~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~ 205 (286)
..++..++++|||+|||||+|||+||.......+.+|+|++|+.||......++||+.+|+++..++|.+|+|+|+|+.+
T Consensus 71 ~~k~~k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~ 150 (274)
T COG2503 71 QAKKKKGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQE 150 (274)
T ss_pred hhccccCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchh
Confidence 45667788889999999999999999988777888999999999999999999999999999999999999999999977
Q ss_pred h-HHHHHHHHHhcCCCCc--ceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccC-------------
Q 023192 206 Q-RSITVDNLINAGVRYW--DKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGS------------- 269 (286)
Q Consensus 206 ~-r~~T~~~L~~~Gi~~~--~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga------------- 269 (286)
. ...|.++|.+.|+++- +++++..+. . -|+.+|+.+ +++|.|++.|||+..||...
T Consensus 151 ~~~~~T~~nLk~~g~~~~~~~~~llkk~~-k------~Ke~R~~~v-~k~~~iVm~vGDNl~DF~d~~~k~~~~eR~Alv 222 (274)
T COG2503 151 NEKDGTIENLKSEGLPQVLESHLLLKKDK-K------SKEVRRQAV-EKDYKIVMLVGDNLDDFGDNAYKKAEAERRALV 222 (274)
T ss_pred cccchhHHHHHHcCcccccccceEEeeCC-C------cHHHHHHHH-hhccceeeEecCchhhhcchhhhhhhHHHHHHH
Confidence 6 8999999999999974 456666322 1 255555555 56899999999999999663
Q ss_pred -----CCCCcEEEecCCCCC
Q 023192 270 -----PMPSRSFKLPNPMYY 284 (286)
Q Consensus 270 -----~~g~r~fkLPNp~Y~ 284 (286)
.+|.+++.||||||.
T Consensus 223 ~~~~~~FGk~~Ii~pN~~YG 242 (274)
T COG2503 223 KQNQKKFGKKFIILPNSMYG 242 (274)
T ss_pred HHHHHHhCceEEEecCCccC
Confidence 269999999999996
No 6
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.84 E-value=9.8e-21 Score=170.76 Aligned_cols=141 Identities=21% Similarity=0.270 Sum_probs=101.9
Q ss_pred ccEEEEecCCCccCCchh--hhhhcCCC--ccC-CHHH-HHHHHHh--cCCcccHHHHHHHHHHHHCCCeEEEEcCCchh
Q 023192 134 KDAWIFDIDETLLSNLPY--YQEHGYGL--EIF-NPVE-FDKWVEK--AMSPAIEASLKLYEEVLGLGFKIFLLTGRSEK 205 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~--~~~~~~g~--~~f-~~~~-~~~wv~~--~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~ 205 (286)
+.+|+||||||+++|+|| +.+..|+. ..| +.+. |+.|... ..+.|.||+++++++|+++|++|+|+|||++.
T Consensus 63 p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~ 142 (237)
T PRK11009 63 PMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTAT 142 (237)
T ss_pred CcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 449999999999998884 44445532 346 3334 5555442 35678889999999999999999999999988
Q ss_pred hHHHHHHHHHh-cCCC--CcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCC-CCC---cEEEe
Q 023192 206 QRSITVDNLIN-AGVR--YWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSP-MPS---RSFKL 278 (286)
Q Consensus 206 ~r~~T~~~L~~-~Gi~--~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~-~g~---r~fkL 278 (286)
.+..|.++|.+ +|+| .+..+++.++. ..|+. .+..+++ +.++++|||+++|+.+++ +|. +++.-
T Consensus 143 k~~~t~~~Llk~~gip~~~~f~vil~gd~-~~K~~------K~~~l~~--~~i~I~IGDs~~Di~aA~~AGi~~I~v~~G 213 (237)
T PRK11009 143 KTETVSKTLADDFHIPADNMNPVIFAGDK-PGQYT------KTQWLKK--KNIRIFYGDSDNDITAAREAGARGIRILRA 213 (237)
T ss_pred ccHHHHHHHHHHcCCCcccceeEEEcCCC-CCCCC------HHHHHHh--cCCeEEEcCCHHHHHHHHHcCCcEEEEecC
Confidence 78889999887 8994 45566666543 23332 2234444 346889999999999883 454 45566
Q ss_pred cCCCC
Q 023192 279 PNPMY 283 (286)
Q Consensus 279 PNp~Y 283 (286)
+||+|
T Consensus 214 ~~~~~ 218 (237)
T PRK11009 214 ANSTY 218 (237)
T ss_pred CCCCC
Confidence 89988
No 7
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.74 E-value=2.1e-17 Score=149.24 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=97.7
Q ss_pred CCCccEEEEecCCCccCCchhhhhhcCCCccCC---------HHHHHHHHHhcCC--cccHHHHHHHHHHHHCCCeEEEE
Q 023192 131 GDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFN---------PVEFDKWVEKAMS--PAIEASLKLYEEVLGLGFKIFLL 199 (286)
Q Consensus 131 ~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~---------~~~~~~wv~~~~~--~~~pgv~ell~~Lk~~G~~Ii~v 199 (286)
+.++-+|+|||||||+||.|++ + +|...++ +..|+.|...... .+.+++.+++++++++|++++|+
T Consensus 60 ~~~p~aViFDlDgTLlDSs~~~-~--~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iV 136 (237)
T TIGR01672 60 GRPPIAVSFDIDDTVLFSSPGF-W--RGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFV 136 (237)
T ss_pred CCCCeEEEEeCCCccccCcHHH-h--CCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEE
Confidence 3444499999999999999987 2 3322222 3568888776544 56666999999999999999999
Q ss_pred cCCchhhHHHHHHH-HHhcCCCCcceEEEcCCC-CCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccC-CCCCcEE
Q 023192 200 TGRSEKQRSITVDN-LINAGVRYWDKLILRSSD-DHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGS-PMPSRSF 276 (286)
Q Consensus 200 TgR~e~~r~~T~~~-L~~~Gi~~~~~Lilr~~~-~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga-~~g~r~f 276 (286)
|||.+..++.+.+. ++.+|++.++..++..+. ...||++. ..+++ +.++++|||+.+|+.++ ++|.+++
T Consensus 137 Tnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~------~~l~~--~~i~i~vGDs~~DI~aAk~AGi~~I 208 (237)
T TIGR01672 137 TGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT------QWIQD--KNIRIHYGDSDNDITAAKEAGARGI 208 (237)
T ss_pred eCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH------HHHHh--CCCeEEEeCCHHHHHHHHHCCCCEE
Confidence 99976534444444 556899887666666544 23455431 23333 44689999999999888 5788887
Q ss_pred Ee
Q 023192 277 KL 278 (286)
Q Consensus 277 kL 278 (286)
.+
T Consensus 209 ~V 210 (237)
T TIGR01672 209 RI 210 (237)
T ss_pred EE
Confidence 66
No 8
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.53 E-value=6.4e-14 Score=124.59 Aligned_cols=98 Identities=14% Similarity=0.047 Sum_probs=76.1
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEc-CCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILR-SSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr-~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
..++||+.+++..|+++|++++++||++ +..+...|+++|+..|+..+.. ......||++....... .+.|.+
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~---~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~---~~~~~~ 161 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKP---ERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLL---EKLGLD 161 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCc---HHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHH---HHhCCC
Confidence 4789999999999999999999999999 5678888999999988776666 33456788775433333 333444
Q ss_pred --EEEEEcCChhhhccCC-CCCcEEEec
Q 023192 255 --ILGNSGDQWSDLLGSP-MPSRSFKLP 279 (286)
Q Consensus 255 --i~~~IGDq~sDl~ga~-~g~r~fkLP 279 (286)
.+++|||+..|+.+|+ +|..++.+-
T Consensus 162 ~~~~l~VGDs~~Di~aA~~Ag~~~v~v~ 189 (220)
T COG0546 162 PEEALMVGDSLNDILAAKAAGVPAVGVT 189 (220)
T ss_pred hhheEEECCCHHHHHHHHHcCCCEEEEE
Confidence 7899999999999985 566666543
No 9
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.52 E-value=3.3e-13 Score=124.71 Aligned_cols=168 Identities=17% Similarity=0.150 Sum_probs=115.2
Q ss_pred chhhHHHHHhcccCCCccccHHHHHHHHHHhhhh-------hhccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHH
Q 023192 93 PRECLEYVRDYMMGRGYGLDLERVSNEAGVYAKS-------VELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPV 165 (286)
Q Consensus 93 P~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~-------~~~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~ 165 (286)
+.+|.+.+.+- ++. ....+.+..+...+.+- +..-..++++++||+|||+.++... .+|
T Consensus 113 ~e~~~~R~~~R--~~~-~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~~~~~--------~~~--- 178 (300)
T PHA02530 113 VEELVKRNRKR--GER-AVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAKMGGR--------SPY--- 178 (300)
T ss_pred HHHHHHHHHcc--CcC-CCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcCCCCC--------Ccc---
Confidence 34666555543 222 22444555444433211 1122344689999999999987431 223
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcce--------EEEcCCCCCCchH
Q 023192 166 EFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK--------LILRSSDDHGKLA 237 (286)
Q Consensus 166 ~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~--------Lilr~~~~~~Kp~ 237 (286)
+|......+++|++.++++.|+++|++++++|||++..+..+.+||...|+. ++. ++||+.. .+||+
T Consensus 179 ---~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~-f~~i~~~~~~~~~~~~~~-~~kp~ 253 (300)
T PHA02530 179 ---DWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIW-FDDLIGRPPDMHFQREQG-DKRPD 253 (300)
T ss_pred ---chhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCc-hhhhhCCcchhhhcccCC-CCCCc
Confidence 2444556899999999999999999999999999999999999999888732 333 3444433 46888
Q ss_pred HHhHHHHHHhHhhcCCeEEEEEcCChhhhccCC-CCCcEEEec
Q 023192 238 IIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSP-MPSRSFKLP 279 (286)
Q Consensus 238 ~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~-~g~r~fkLP 279 (286)
+..+....+++....++++++|||+..|+.+++ +|..++.+.
T Consensus 254 p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~ 296 (300)
T PHA02530 254 DVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQVA 296 (300)
T ss_pred HHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEec
Confidence 776655555554334689999999999999984 788888774
No 10
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.51 E-value=6.6e-14 Score=124.94 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=80.8
Q ss_pred cCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcce-EEEcCCCCCCchHHH--hHHHHHHhHhh
Q 023192 174 AMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK-LILRSSDDHGKLAII--YKSEKRNEMVQ 250 (286)
Q Consensus 174 ~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~-Lilr~~~~~~Kp~~~--yKs~~r~~L~~ 250 (286)
...+++||+.++++.|+++|+++++.|+.+ |..+...|...|+..++. ++.+.+..++||+|. .+...+..+.
T Consensus 83 ~~~~~~pGv~~~l~~L~~~~i~~avaS~s~---~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~- 158 (221)
T COG0637 83 EGLKPIPGVVELLEQLKARGIPLAVASSSP---RRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVD- 158 (221)
T ss_pred cCCCCCccHHHHHHHHHhcCCcEEEecCCh---HHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCC-
Confidence 457999999999999999999999999998 778899999999887654 455555567787763 2333332222
Q ss_pred cCCeEEEEEcCChhhhccCC-CCCcEEEecCC
Q 023192 251 EGYRILGNSGDQWSDLLGSP-MPSRSFKLPNP 281 (286)
Q Consensus 251 ~Gy~i~~~IGDq~sDl~ga~-~g~r~fkLPNp 281 (286)
-..|++|+|++.++++++ +|+++|.+|++
T Consensus 159 --P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~ 188 (221)
T COG0637 159 --PEECVVVEDSPAGIQAAKAAGMRVVGVPAG 188 (221)
T ss_pred --hHHeEEEecchhHHHHHHHCCCEEEEecCC
Confidence 236999999999999995 89999999983
No 11
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.49 E-value=1.6e-13 Score=122.43 Aligned_cols=101 Identities=17% Similarity=0.058 Sum_probs=73.4
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc-ceEEEcCCCCCCchHHHhHHHHHHhHhhcCC-
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW-DKLILRSSDDHGKLAIIYKSEKRNEMVQEGY- 253 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~-~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy- 253 (286)
..++||+.++++.|+++|++++++||.+ +......|+..|+..| +.++.......+||++.. .+..+++.|.
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~---~~~~~~~~~~~ 165 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAH---PHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRL---WQAVAEHTGLK 165 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcC---HHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHH---HHHHHHHcCCC
Confidence 6789999999999999999999999987 4556666888898765 455544444456776632 1222223332
Q ss_pred -eEEEEEcCChhhhccCC-CCCcE-EEecCCC
Q 023192 254 -RILGNSGDQWSDLLGSP-MPSRS-FKLPNPM 282 (286)
Q Consensus 254 -~i~~~IGDq~sDl~ga~-~g~r~-fkLPNp~ 282 (286)
+.+++|||+..|+.+|+ +|+++ +.++||-
T Consensus 166 p~~~l~igDs~~di~aA~~aG~~~~~~v~~~~ 197 (224)
T PRK14988 166 AERTLFIDDSEPILDAAAQFGIRYCLGVTNPD 197 (224)
T ss_pred hHHEEEEcCCHHHHHHHHHcCCeEEEEEeCCC
Confidence 35999999999999985 78874 6677764
No 12
>PRK11587 putative phosphatase; Provisional
Probab=99.48 E-value=2.6e-13 Score=119.99 Aligned_cols=101 Identities=13% Similarity=0.020 Sum_probs=73.0
Q ss_pred cCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcC-
Q 023192 174 AMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEG- 252 (286)
Q Consensus 174 ~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G- 252 (286)
...+++||+.++++.|+++|++++++||++. ..+...|+..|+..++.++........||++.. ....+++.|
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~---~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~---~~~~~~~~g~ 153 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLGIPWAIVTSGSV---PVASARHKAAGLPAPEVFVTAERVKRGKPEPDA---YLLGAQLLGL 153 (218)
T ss_pred cCceeCcCHHHHHHHHHHcCCcEEEEcCCCc---hHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHH---HHHHHHHcCC
Confidence 3568899999999999999999999999873 345667788888645555544444456776532 222223333
Q ss_pred -CeEEEEEcCChhhhccCC-CCCcEEEecC
Q 023192 253 -YRILGNSGDQWSDLLGSP-MPSRSFKLPN 280 (286)
Q Consensus 253 -y~i~~~IGDq~sDl~ga~-~g~r~fkLPN 280 (286)
.+.+++|||+..|+.+|+ +|.+++.+.+
T Consensus 154 ~p~~~l~igDs~~di~aA~~aG~~~i~v~~ 183 (218)
T PRK11587 154 APQECVVVEDAPAGVLSGLAAGCHVIAVNA 183 (218)
T ss_pred CcccEEEEecchhhhHHHHHCCCEEEEECC
Confidence 346999999999999984 7888887754
No 13
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.48 E-value=3.4e-13 Score=121.80 Aligned_cols=101 Identities=17% Similarity=0.107 Sum_probs=75.6
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc--ceEEEcCCCCCCchHHHhHHHHHHhHhhcC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW--DKLILRSSDDHGKLAIIYKSEKRNEMVQEG 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~--~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G 252 (286)
...++||+.++|+.|+++|++++++||++ +..+...|+++|+..+ +.++.......+||++.. ....+++.|
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~---~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~---~~~a~~~l~ 170 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYT---REMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWM---ALKNAIELG 170 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCc---HHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHH---HHHHHHHcC
Confidence 46889999999999999999999999998 5667778888888775 334444444456777632 223333334
Q ss_pred C---eEEEEEcCChhhhccCC-CCCcEEEecCC
Q 023192 253 Y---RILGNSGDQWSDLLGSP-MPSRSFKLPNP 281 (286)
Q Consensus 253 y---~i~~~IGDq~sDl~ga~-~g~r~fkLPNp 281 (286)
. ..+++|||+++|+.+|+ +|.+++.++..
T Consensus 171 ~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g 203 (253)
T TIGR01422 171 VYDVAACVKVGDTVPDIEEGRNAGMWTVGLILS 203 (253)
T ss_pred CCCchheEEECCcHHHHHHHHHCCCeEEEEecC
Confidence 2 35899999999999994 79999988653
No 14
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.46 E-value=5.7e-13 Score=117.39 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=73.5
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC--Ccc-eEEEcCCCCCCchHHHhHHHHHHhHhhc
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR--YWD-KLILRSSDDHGKLAIIYKSEKRNEMVQE 251 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~--~~~-~Lilr~~~~~~Kp~~~yKs~~r~~L~~~ 251 (286)
..+++||+.++++.|+++|++++++||+. +......|+++|+. .+. .++...+...+||++.. ....+++.
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~---~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~---~~~a~~~~ 158 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFD---RDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDL---ILRAMELT 158 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCc---hHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHH---HHHHHHHc
Confidence 35799999999999999999999999998 45566788888886 554 44444433456777642 22233333
Q ss_pred CC---eEEEEEcCChhhhccC-CCCCcE-EEecC
Q 023192 252 GY---RILGNSGDQWSDLLGS-PMPSRS-FKLPN 280 (286)
Q Consensus 252 Gy---~i~~~IGDq~sDl~ga-~~g~r~-fkLPN 280 (286)
|. +.+++|||+++|+.+| ++|.++ +.+..
T Consensus 159 ~~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~ 192 (220)
T TIGR03351 159 GVQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLT 192 (220)
T ss_pred CCCChhHeEEeCCCHHHHHHHHHCCCCeEEEEec
Confidence 32 4699999999999999 479998 77654
No 15
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.46 E-value=7.2e-13 Score=121.21 Aligned_cols=100 Identities=10% Similarity=0.000 Sum_probs=75.6
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc-eEEEcCCCCCCchHHHhHHHHHHhHhhcCC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD-KLILRSSDDHGKLAIIYKSEKRNEMVQEGY 253 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~-~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy 253 (286)
..+++||+.++++.|+++|++++++||++ +..+...|+.+|+..|. .++...+...+||++.. ....+++.|.
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~---~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~---~~~a~~~l~~ 180 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRP---RRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEM---FMYAAERLGF 180 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcC---HHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHH---HHHHHHHhCC
Confidence 46789999999999999999999999998 56677888999998754 45544444457877632 2223333343
Q ss_pred --eEEEEEcCChhhhccCC-CCCcEEEecC
Q 023192 254 --RILGNSGDQWSDLLGSP-MPSRSFKLPN 280 (286)
Q Consensus 254 --~i~~~IGDq~sDl~ga~-~g~r~fkLPN 280 (286)
..+++|||+.+|+.+|+ +|.+++.+.+
T Consensus 181 ~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g 210 (260)
T PLN03243 181 IPERCIVFGNSNSSVEAAHDGCMKCVAVAG 210 (260)
T ss_pred ChHHeEEEcCCHHHHHHHHHcCCEEEEEec
Confidence 35899999999999995 7999888764
No 16
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.46 E-value=6.8e-13 Score=118.51 Aligned_cols=100 Identities=11% Similarity=-0.022 Sum_probs=72.7
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCC-CCCCchHHHhHHHHHHhHhhcCC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSS-DDHGKLAIIYKSEKRNEMVQEGY 253 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~-~~~~Kp~~~yKs~~r~~L~~~Gy 253 (286)
..+++||+.++++.|+++|++++++||++ +......|+++|+..+...+...+ ...+||++..-....+.+.- ..
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~-~p 168 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKP---EYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGV-AP 168 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCC-Ch
Confidence 36789999999999999999999999998 455667888899877655554443 34567776432222222211 13
Q ss_pred eEEEEEcCChhhhccCC-CCCcEEEe
Q 023192 254 RILGNSGDQWSDLLGSP-MPSRSFKL 278 (286)
Q Consensus 254 ~i~~~IGDq~sDl~ga~-~g~r~fkL 278 (286)
+.+++|||+.+|+.+|+ +|.+++.+
T Consensus 169 ~~~l~IGDs~~Di~aA~~aG~~~i~v 194 (229)
T PRK13226 169 TDCVYVGDDERDILAARAAGMPSVAA 194 (229)
T ss_pred hhEEEeCCCHHHHHHHHHCCCcEEEE
Confidence 46999999999999984 78888765
No 17
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.45 E-value=9.8e-13 Score=119.01 Aligned_cols=100 Identities=14% Similarity=-0.028 Sum_probs=75.9
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcce-EEEcCCCCCCchHHHhHHHHHHhHhhcC-
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK-LILRSSDDHGKLAIIYKSEKRNEMVQEG- 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~-Lilr~~~~~~Kp~~~yKs~~r~~L~~~G- 252 (286)
..+++||+.++++.|+++|++++++||++ +..+...|+++|+..|+. ++...+...+||++.. ....+++.|
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~---~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~---~~~a~~~~~~ 179 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAP---RENAELMISLLGLSDFFQAVIIGSECEHAKPHPDP---YLKALEVLKV 179 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHH---HHHHHHHhCC
Confidence 46789999999999999999999999998 667888899999987654 4555444566877642 222222223
Q ss_pred -CeEEEEEcCChhhhccCC-CCCcEEEecC
Q 023192 253 -YRILGNSGDQWSDLLGSP-MPSRSFKLPN 280 (286)
Q Consensus 253 -y~i~~~IGDq~sDl~ga~-~g~r~fkLPN 280 (286)
.+.+++|||+..|+.+|+ +|.+++.+..
T Consensus 180 ~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~ 209 (248)
T PLN02770 180 SKDHTFVFEDSVSGIKAGVAAGMPVVGLTT 209 (248)
T ss_pred ChhHEEEEcCCHHHHHHHHHCCCEEEEEeC
Confidence 245899999999999984 7898887743
No 18
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.44 E-value=8.9e-13 Score=115.94 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=72.5
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCC-CCCCchHHHhHHHHHHhHhhcC-
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSS-DDHGKLAIIYKSEKRNEMVQEG- 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~-~~~~Kp~~~yKs~~r~~L~~~G- 252 (286)
..+++||+.++++.|+++|++++++||++ +..+...|+..|+..|...++..+ ...+||++..- ++.+.+.|
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~---~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~---~~~~~~~~~ 153 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKM---RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPV---LKALELLGA 153 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHH---HHHHHHcCC
Confidence 35789999999999999999999999998 566778889999988655555443 34456655322 22222223
Q ss_pred -CeEEEEEcCChhhhccC-CCCCcEEEec
Q 023192 253 -YRILGNSGDQWSDLLGS-PMPSRSFKLP 279 (286)
Q Consensus 253 -y~i~~~IGDq~sDl~ga-~~g~r~fkLP 279 (286)
...+++|||+.+|+.+| ++|.+++.+.
T Consensus 154 ~~~~~~~iGDs~~Di~aa~~aG~~~i~v~ 182 (214)
T PRK13288 154 KPEEALMVGDNHHDILAGKNAGTKTAGVA 182 (214)
T ss_pred CHHHEEEECCCHHHHHHHHHCCCeEEEEc
Confidence 24588999999999998 4688777653
No 19
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.44 E-value=1.3e-12 Score=115.01 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=75.5
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc-ceEEEcCCCCCCchHHHhHHHHHHhHhhcCC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW-DKLILRSSDDHGKLAIIYKSEKRNEMVQEGY 253 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~-~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy 253 (286)
..+++||+.+++++|+++|++++++||.+ +......|++.|+..| +.++...+....||++.. .+..+++.|.
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~---~~~~~~~~~~ 165 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGL---PVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKI---FYAALKRLGV 165 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCc---hHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHH---HHHHHHHcCC
Confidence 35789999999999999999999999997 3455677888999775 455555554556777632 2223333343
Q ss_pred --eEEEEEcCCh-hhhccCC-CCCcEEEecCCC
Q 023192 254 --RILGNSGDQW-SDLLGSP-MPSRSFKLPNPM 282 (286)
Q Consensus 254 --~i~~~IGDq~-sDl~ga~-~g~r~fkLPNp~ 282 (286)
..+++|||++ +|+.+|+ +|.+++.++.+.
T Consensus 166 ~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~ 198 (221)
T TIGR02253 166 KPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGK 198 (221)
T ss_pred ChhhEEEECCChHHHHHHHHHCCCEEEEECCCC
Confidence 4689999998 8999985 788888877643
No 20
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.43 E-value=1.1e-12 Score=120.85 Aligned_cols=98 Identities=13% Similarity=0.065 Sum_probs=72.5
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcC--
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEG-- 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G-- 252 (286)
..+++||+.++++.|+++|++++++||.. +..+...|+..|+..+...+........|+.. ....+++.|
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~---~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~-----~~~~l~~~~~~ 211 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNS---RQNIEAFLQRQGLRSLFSVVQAGTPILSKRRA-----LSQLVAREGWQ 211 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCChhheEEEEecCCCCCCHHH-----HHHHHHHhCcC
Confidence 45789999999999999999999999998 67788889999998765555444333344433 222222222
Q ss_pred CeEEEEEcCChhhhccCC-CCCcEEEecC
Q 023192 253 YRILGNSGDQWSDLLGSP-MPSRSFKLPN 280 (286)
Q Consensus 253 y~i~~~IGDq~sDl~ga~-~g~r~fkLPN 280 (286)
.+.+++|||+..|+.+|+ +|.+++.++.
T Consensus 212 p~~~l~IGDs~~Di~aA~~AG~~~I~v~~ 240 (273)
T PRK13225 212 PAAVMYVGDETRDVEAARQVGLIAVAVTW 240 (273)
T ss_pred hhHEEEECCCHHHHHHHHHCCCeEEEEec
Confidence 246899999999999984 7998887753
No 21
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.42 E-value=3.3e-12 Score=113.05 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=77.4
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEE-EcCCCCCCchHHHhHHHHHHhHhhcCC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLI-LRSSDDHGKLAIIYKSEKRNEMVQEGY 253 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Li-lr~~~~~~Kp~~~yKs~~r~~L~~~Gy 253 (286)
..+++||+.++++.|+++|++++++||.. +..+...|+..|+..+...+ .+.....+||++. ..+..+++.|.
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~---~~~~~~~~~~~ 163 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASP---LHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPE---VYLNCAAKLGV 163 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCc---HHHHHHHHHhCcchhcccEEEEcccCCCCCCCHH---HHHHHHHHcCC
Confidence 46789999999999999999999999987 56778888999998765444 4433345677663 23333444443
Q ss_pred --eEEEEEcCChhhhccC-CCCCcEEEecCC
Q 023192 254 --RILGNSGDQWSDLLGS-PMPSRSFKLPNP 281 (286)
Q Consensus 254 --~i~~~IGDq~sDl~ga-~~g~r~fkLPNp 281 (286)
..+++|||+.+|+.+| ++|.+++.+++|
T Consensus 164 ~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~ 194 (222)
T PRK10826 164 DPLTCVALEDSFNGMIAAKAARMRSIVVPAP 194 (222)
T ss_pred CHHHeEEEcCChhhHHHHHHcCCEEEEecCC
Confidence 4689999999999998 589999998875
No 22
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.42 E-value=1.5e-12 Score=124.75 Aligned_cols=100 Identities=10% Similarity=0.030 Sum_probs=76.4
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcC-CCCCCchHHHhHHHHHHhHhhcC-
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRS-SDDHGKLAIIYKSEKRNEMVQEG- 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~-~~~~~Kp~~~yKs~~r~~L~~~G- 252 (286)
...++||+.++++.|+++|++++++||++ +..+...|+++|+..|+..+... +...+||++.. ....+++.|
T Consensus 214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~---~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Pei---fl~A~~~lgl 287 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYKIPMALVSTRP---RKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEM---FIYAAQLLNF 287 (381)
T ss_pred CCCcCcCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHH---HHHHHHHcCC
Confidence 45789999999999999999999999998 67788889999998765544444 44456776632 122223333
Q ss_pred -CeEEEEEcCChhhhccCC-CCCcEEEecC
Q 023192 253 -YRILGNSGDQWSDLLGSP-MPSRSFKLPN 280 (286)
Q Consensus 253 -y~i~~~IGDq~sDl~ga~-~g~r~fkLPN 280 (286)
...+++|||+..|+++|+ +|++++.+.+
T Consensus 288 ~Peecl~IGDS~~DIeAAk~AGm~~IgV~~ 317 (381)
T PLN02575 288 IPERCIVFGNSNQTVEAAHDARMKCVAVAS 317 (381)
T ss_pred CcccEEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 346999999999999995 7999888865
No 23
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.41 E-value=1.8e-12 Score=113.27 Aligned_cols=98 Identities=16% Similarity=0.021 Sum_probs=71.7
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc-eEEEcCCCCCCchHHHhHHHHHHhHhhcC-
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD-KLILRSSDDHGKLAIIYKSEKRNEMVQEG- 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~-~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G- 252 (286)
..+++||+.+++++|+++|++++++||++ +..+...|+..|+..+. .++...+...+||++.. .+..+++.|
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~---~~~~~~~~~~ 146 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKS---GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDI---VREALRLLDV 146 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHHHcCChhheeeEEecCcCCCCCCChHH---HHHHHHHcCC
Confidence 46789999999999999999999999987 55677788999997654 44444433446776532 222233333
Q ss_pred -CeEEEEEcCChhhhccCC-CCCcEEEe
Q 023192 253 -YRILGNSGDQWSDLLGSP-MPSRSFKL 278 (286)
Q Consensus 253 -y~i~~~IGDq~sDl~ga~-~g~r~fkL 278 (286)
...+++|||+.+|+.+|+ +|.+++.+
T Consensus 147 ~~~~~l~igD~~~Di~aA~~~Gi~~i~~ 174 (205)
T TIGR01454 147 PPEDAVMVGDAVTDLASARAAGTATVAA 174 (205)
T ss_pred ChhheEEEcCCHHHHHHHHHcCCeEEEE
Confidence 245899999999999884 68877655
No 24
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.39 E-value=2e-12 Score=110.45 Aligned_cols=96 Identities=10% Similarity=-0.016 Sum_probs=68.4
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc-eEEEcCCCCCCchHHHhHHHHHHhHhhcCC-
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD-KLILRSSDDHGKLAIIYKSEKRNEMVQEGY- 253 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~-~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy- 253 (286)
..++||+.++|+.|+++|++++++|++.. ....|++.|+..+. .++...+....||++.. .+..+++.|.
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~-----~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~---~~~~~~~~~~~ 157 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN-----APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEI---FLAAAEGLGVS 157 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc-----HHHHHHhcCcHhhCcEEEehhhcCCCCCChHH---HHHHHHHcCCC
Confidence 47899999999999999999999999752 13468888987754 44444444456776632 2222333333
Q ss_pred -eEEEEEcCChhhhccCC-CCCcEEEec
Q 023192 254 -RILGNSGDQWSDLLGSP-MPSRSFKLP 279 (286)
Q Consensus 254 -~i~~~IGDq~sDl~ga~-~g~r~fkLP 279 (286)
..+++|||++.|+.+|+ +|.+++.++
T Consensus 158 ~~~~v~vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 158 PSECIGIEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred HHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence 35889999999999995 788887653
No 25
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.39 E-value=3.3e-12 Score=116.54 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=72.7
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc--ceEEEcCCCCCCchHHHhHHHHHHhHhhcC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW--DKLILRSSDDHGKLAIIYKSEKRNEMVQEG 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~--~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G 252 (286)
...++||+.++++.|+++|++++++||.+ +..+...|+.+|+..+ +.++...+....||++.. ....+++.|
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~---~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~---~~~a~~~l~ 172 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYT---REMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWM---ALKNAIELG 172 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCc---HHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHH---HHHHHHHcC
Confidence 46789999999999999999999999998 4566677777776554 344444444456776632 223333333
Q ss_pred ---CeEEEEEcCChhhhccCC-CCCcEEEecC
Q 023192 253 ---YRILGNSGDQWSDLLGSP-MPSRSFKLPN 280 (286)
Q Consensus 253 ---y~i~~~IGDq~sDl~ga~-~g~r~fkLPN 280 (286)
.+.+++|||+++|+.+|+ +|.+++.+..
T Consensus 173 ~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~ 204 (267)
T PRK13478 173 VYDVAACVKVDDTVPGIEEGLNAGMWTVGVIL 204 (267)
T ss_pred CCCCcceEEEcCcHHHHHHHHHCCCEEEEEcc
Confidence 246999999999999994 7888887753
No 26
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.39 E-value=2.4e-12 Score=112.51 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=72.8
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEE-cCCCCCCchHHHhHHHHHHhHhhcC-
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLIL-RSSDDHGKLAIIYKSEKRNEMVQEG- 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lil-r~~~~~~Kp~~~yKs~~r~~L~~~G- 252 (286)
..+++||+.++++.|+++|++++++||.+ +......|++.|+..+...+. ..+....||++.. ....+++.|
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~---~~~~~~~~~~ 156 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKP---TPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDP---LLLAAERLGV 156 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHH---HHHHHHHcCC
Confidence 35789999999999999999999999987 566788899999977644444 3333446776532 222233333
Q ss_pred -CeEEEEEcCChhhhccC-CCCCcEEEec
Q 023192 253 -YRILGNSGDQWSDLLGS-PMPSRSFKLP 279 (286)
Q Consensus 253 -y~i~~~IGDq~sDl~ga-~~g~r~fkLP 279 (286)
.+.+++|||+.+|+.++ ++|.+++.+.
T Consensus 157 ~~~~~~~igDs~~d~~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 157 APQQMVYVGDSRVDIQAARAAGCPSVLLT 185 (213)
T ss_pred ChhHeEEeCCCHHHHHHHHHCCCeEEEEc
Confidence 34589999999999988 4788877664
No 27
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.39 E-value=1.5e-12 Score=108.74 Aligned_cols=128 Identities=15% Similarity=0.104 Sum_probs=86.4
Q ss_pred cEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchh---------
Q 023192 135 DAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEK--------- 205 (286)
Q Consensus 135 ~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~--------- 205 (286)
++++||+||||.++...+ | ...|.+ ..++||+.++++.|+++|++++++||.+..
T Consensus 1 ~~~~~d~dgtl~~~~~~~---------~-~~~~~~------~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~ 64 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD---------Y-PRSLDD------WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEA 64 (147)
T ss_pred CeEEEeCCCceeccCCcc---------c-CCCHHH------eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHH
Confidence 478999999999875421 1 112433 368999999999999999999999998731
Q ss_pred ---hHHHHHHHHHhcCCCCcceEEEcC----C-CCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccC-CCCCcEE
Q 023192 206 ---QRSITVDNLINAGVRYWDKLILRS----S-DDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGS-PMPSRSF 276 (286)
Q Consensus 206 ---~r~~T~~~L~~~Gi~~~~~Lilr~----~-~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga-~~g~r~f 276 (286)
....+...|++.|+. +...+... . ...+||.+..-....+.+. ...+.+++|||+..|+.+| ++|.+++
T Consensus 65 ~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~-~~~~e~i~IGDs~~Di~~A~~~Gi~~v 142 (147)
T TIGR01656 65 FRAPNGRVLELLRQLGVA-VDGVLFCPHHPADNCSCRKPKPGLILEALKRLG-VDASRSLVVGDRLRDLQAARNAGLAAV 142 (147)
T ss_pred HHHHHHHHHHHHHhCCCc-eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcC-CChHHEEEEcCCHHHHHHHHHCCCCEE
Confidence 124566788889986 22223321 1 1234666543222222221 1234699999999999999 5899999
Q ss_pred EecC
Q 023192 277 KLPN 280 (286)
Q Consensus 277 kLPN 280 (286)
.+|.
T Consensus 143 ~i~~ 146 (147)
T TIGR01656 143 LLVD 146 (147)
T ss_pred EecC
Confidence 8875
No 28
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.39 E-value=4.4e-12 Score=110.11 Aligned_cols=103 Identities=13% Similarity=0.001 Sum_probs=74.4
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc-ceEEEcCCCCCCchHHHhHHHHHHhHhhcCC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW-DKLILRSSDDHGKLAIIYKSEKRNEMVQEGY 253 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~-~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy 253 (286)
..+++||+.+++++|+++|++++++||.+ +......|++.|+..+ +.++..+.....||++..-....+.+.- ..
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~---~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~-~p 165 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGS---PAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGV-PP 165 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCC-Ch
Confidence 46788999999999999999999999988 4556777888998764 5555555445568776421122222211 12
Q ss_pred eEEEEEcCChhhhccC-CCCCcEEEecCC
Q 023192 254 RILGNSGDQWSDLLGS-PMPSRSFKLPNP 281 (286)
Q Consensus 254 ~i~~~IGDq~sDl~ga-~~g~r~fkLPNp 281 (286)
+.+++|||+..|+.+| .+|.+++.+..+
T Consensus 166 ~~~~~vgD~~~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 166 DEVLFVASNPWDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred hhEEEEeCCHHHHHHHHHCCCcEEEecCC
Confidence 4688999999999999 479998877543
No 29
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=99.38 E-value=2.2e-12 Score=105.78 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=63.5
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHH-----
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRS----- 208 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~----- 208 (286)
+++|+|||||||+.+.. .+|. ...+.+++++.+++++++|+.|+++|||+...+.
T Consensus 1 ~K~i~~DiDGTL~~~~~---------~~y~-----------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~ 60 (126)
T TIGR01689 1 MKRLVMDLDNTITLTEN---------GDYA-----------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGK 60 (126)
T ss_pred CCEEEEeCCCCcccCCC---------Cccc-----------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccc
Confidence 36899999999985410 1121 2568899999999999999999999999987766
Q ss_pred -------HHHHHHHhcCCCCcceEEEcCC
Q 023192 209 -------ITVDNLINAGVRYWDKLILRSS 230 (286)
Q Consensus 209 -------~T~~~L~~~Gi~~~~~Lilr~~ 230 (286)
.|.+||.++|+| |++++|+.+
T Consensus 61 i~~~~~~~t~~wL~k~~ip-Yd~l~~~kp 88 (126)
T TIGR01689 61 INIHTLPIIILWLNQHNVP-YDEIYVGKP 88 (126)
T ss_pred cchhhHHHHHHHHHHcCCC-CceEEeCCC
Confidence 999999999998 999999985
No 30
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.34 E-value=1.5e-11 Score=113.08 Aligned_cols=99 Identities=15% Similarity=0.065 Sum_probs=71.5
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCC-CCCCchHHHhHHHHHHhHhhcCC-
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSS-DDHGKLAIIYKSEKRNEMVQEGY- 253 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~-~~~~Kp~~~yKs~~r~~L~~~Gy- 253 (286)
.+++||+.++++.|+++|++++++||.++ ......|.++|+..+...+...+ ....||++.. ....+++.|.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~---~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~---~~~~~~~~g~~ 173 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPE---RFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAA---LLFVMKMAGVP 173 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcH---HHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHH---HHHHHHHhCCC
Confidence 56899999999999999999999999884 45667788889877554444443 3345766532 1122222332
Q ss_pred -eEEEEEcCChhhhccCC-CCCcEEEecC
Q 023192 254 -RILGNSGDQWSDLLGSP-MPSRSFKLPN 280 (286)
Q Consensus 254 -~i~~~IGDq~sDl~ga~-~g~r~fkLPN 280 (286)
..+++|||+.+|+.+++ +|.+++.+++
T Consensus 174 ~~~~l~IGD~~~Di~aA~~aGi~~i~v~~ 202 (272)
T PRK13223 174 PSQSLFVGDSRSDVLAAKAAGVQCVALSY 202 (272)
T ss_pred hhHEEEECCCHHHHHHHHHCCCeEEEEec
Confidence 36889999999999984 7888887765
No 31
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.34 E-value=5.9e-12 Score=109.56 Aligned_cols=90 Identities=14% Similarity=0.035 Sum_probs=62.8
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEE
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRIL 256 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~ 256 (286)
.+.+++.++++.|+++|++++++||++ +..+...|+..|+..|...+...+....||++..-....+.+.. .-+.+
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~---~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~-~~~~~ 181 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRP---RKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGV-EACHA 181 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCC---HHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCc-CcccE
Confidence 344456999999999999999999998 66788889999998765544444433237766432222222211 12368
Q ss_pred EEEcCChhhhccCC
Q 023192 257 GNSGDQWSDLLGSP 270 (286)
Q Consensus 257 ~~IGDq~sDl~ga~ 270 (286)
++|||+++|+.+|+
T Consensus 182 i~vGD~~~Di~aA~ 195 (197)
T TIGR01548 182 AMVGDTVDDIITGR 195 (197)
T ss_pred EEEeCCHHHHHHHH
Confidence 89999999999886
No 32
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.34 E-value=3e-12 Score=101.71 Aligned_cols=120 Identities=19% Similarity=0.100 Sum_probs=83.8
Q ss_pred EEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHH
Q 023192 136 AWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLI 215 (286)
Q Consensus 136 avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~ 215 (286)
+++||+||||....++... .....+.|++.+++++|+++|++++++||+. +.....+++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~~~ 59 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE------------------IEELELYPGVKEALKELKEKGIKLALATNKS---RREVLELLE 59 (139)
T ss_pred CeEEccCCceEccCccccc------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCch---HHHHHHHHH
Confidence 4799999999977554311 2246889999999999999999999999998 778889999
Q ss_pred hcCCCCcc-eEEEcCCCCCC----------------chHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCCC-CCcEEE
Q 023192 216 NAGVRYWD-KLILRSSDDHG----------------KLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSPM-PSRSFK 277 (286)
Q Consensus 216 ~~Gi~~~~-~Lilr~~~~~~----------------Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~~-g~r~fk 277 (286)
..|+..+. .++........ ||....+......+.. .+..++++||+.+|+..+.. |.+++.
T Consensus 60 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 60 ELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGV-DPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred HcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCC-ChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 99985433 33332222111 4433333333333332 25678999999999998864 777664
No 33
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.34 E-value=4.2e-12 Score=124.72 Aligned_cols=98 Identities=9% Similarity=0.024 Sum_probs=74.3
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCC--CCchHHHhHHHHHHhHhhcC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDD--HGKLAIIYKSEKRNEMVQEG 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~--~~Kp~~~yKs~~r~~L~~~G 252 (286)
..+++||+.++|+.|+++|++++++||++ +..+.+.|+.+|+..|...++..++. ++||+. |.. .+++.+
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~---~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~-~~~----al~~l~ 399 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGL---TEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDL-VKS----ILNKYD 399 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHH-HHH----HHHhcC
Confidence 45789999999999999999999999998 66778889999998765545544432 346654 222 222234
Q ss_pred CeEEEEEcCChhhhccCC-CCCcEEEecC
Q 023192 253 YRILGNSGDQWSDLLGSP-MPSRSFKLPN 280 (286)
Q Consensus 253 y~i~~~IGDq~sDl~ga~-~g~r~fkLPN 280 (286)
.+.+++|||+.+|+.+|+ +|.+++.++.
T Consensus 400 ~~~~v~VGDs~~Di~aAk~AG~~~I~v~~ 428 (459)
T PRK06698 400 IKEAAVVGDRLSDINAAKDNGLIAIGCNF 428 (459)
T ss_pred cceEEEEeCCHHHHHHHHHCCCeEEEEeC
Confidence 567999999999999985 7888887754
No 34
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.33 E-value=7.3e-12 Score=102.11 Aligned_cols=123 Identities=19% Similarity=0.143 Sum_probs=83.5
Q ss_pred cEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhh-----HHH
Q 023192 135 DAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQ-----RSI 209 (286)
Q Consensus 135 ~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~-----r~~ 209 (286)
++++||+||||.++.++. ..|. ...++|++.++++.|+++|++++++||++... +..
T Consensus 1 k~~~~D~dgtL~~~~~~~------------~~~~------~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~ 62 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYV------------DDED------ERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGR 62 (132)
T ss_pred CEEEEeCCCceecCCCCC------------CCHH------HheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHH
Confidence 479999999999653321 1222 25789999999999999999999999998332 455
Q ss_pred HHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcC-ChhhhccCC-CCCcEEEe
Q 023192 210 TVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGD-QWSDLLGSP-MPSRSFKL 278 (286)
Q Consensus 210 T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGD-q~sDl~ga~-~g~r~fkL 278 (286)
+.+.|+.+|+. ++..+... ...||.+..-....+.+.....+.+++||| ...|+.+|+ +|.+++-+
T Consensus 63 ~~~~l~~~~l~-~~~~~~~~--~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~ 130 (132)
T TIGR01662 63 VARRLEELGVP-IDVLYACP--HCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILV 130 (132)
T ss_pred HHHHHHHCCCC-EEEEEECC--CCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEEe
Confidence 77788999997 44444443 344665532222233321012356999999 689999994 67776654
No 35
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.32 E-value=2.8e-11 Score=112.06 Aligned_cols=100 Identities=13% Similarity=-0.014 Sum_probs=68.0
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcC---CCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcC
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAG---VRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEG 252 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~G---i~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G 252 (286)
.+++||+.++++.|+++|++++++||.+. ......|+..+ +..+...+...+....||++..-... +.+.|
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~---~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a---~~~~~ 216 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNE---KAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLA---AETLG 216 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHH---HHHhC
Confidence 47899999999999999999999999873 44445555543 22222344333334567776432222 22223
Q ss_pred C--eEEEEEcCChhhhccCC-CCCcEEEecCC
Q 023192 253 Y--RILGNSGDQWSDLLGSP-MPSRSFKLPNP 281 (286)
Q Consensus 253 y--~i~~~IGDq~sDl~ga~-~g~r~fkLPNp 281 (286)
. ..+++|||+++|+.+|+ +|.+++.++++
T Consensus 217 ~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g 248 (286)
T PLN02779 217 VDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSS 248 (286)
T ss_pred cChHHEEEEeCCHHhHHHHHHcCCEEEEEccC
Confidence 2 35889999999999994 79999888764
No 36
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.31 E-value=1e-11 Score=106.02 Aligned_cols=95 Identities=9% Similarity=-0.057 Sum_probs=67.6
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEE-cCCCCCCchHHHhHHHHHHhHhhcCC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLIL-RSSDDHGKLAIIYKSEKRNEMVQEGY 253 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lil-r~~~~~~Kp~~~yKs~~r~~L~~~Gy 253 (286)
...++||+.++++.|+++|++++++||+ . .....|+..|+..|...+. .......||.+.. ....+++.|.
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~-~----~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~---~~~~~~~~~~ 157 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS-K----NADRILAKLGLTDYFDAIVDADEVKEGKPHPET---FLLAAELLGV 157 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc-h----hHHHHHHHcChHHHCCEeeehhhCCCCCCChHH---HHHHHHHcCC
Confidence 3689999999999999999999999998 2 3566788889876544443 3333345665532 1222333333
Q ss_pred --eEEEEEcCChhhhccCC-CCCcEEE
Q 023192 254 --RILGNSGDQWSDLLGSP-MPSRSFK 277 (286)
Q Consensus 254 --~i~~~IGDq~sDl~ga~-~g~r~fk 277 (286)
..+++|||+..|+.+|+ +|.+++.
T Consensus 158 ~~~~~v~IgD~~~di~aA~~~G~~~i~ 184 (185)
T TIGR02009 158 SPNECVVFEDALAGVQAARAAGMFAVA 184 (185)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCeEee
Confidence 45889999999999995 7887764
No 37
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.29 E-value=1.6e-11 Score=105.51 Aligned_cols=96 Identities=8% Similarity=-0.074 Sum_probs=66.7
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc-eEEEcCCCCC----CchHHHhHHHHHHhHh
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD-KLILRSSDDH----GKLAIIYKSEKRNEMV 249 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~-~Lilr~~~~~----~Kp~~~yKs~~r~~L~ 249 (286)
..+++||+.+++++|+ .+++++||.+ +......|++.|+..+. .++....... .||++..-....+.+.
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~---~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~ 155 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGD---RAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAG 155 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCC---HHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhC
Confidence 3468899999999987 5799999998 55678888999997754 4554443333 3776643222333332
Q ss_pred hcCCeEEEEEcCChhhhccCC-CCCcEEE
Q 023192 250 QEGYRILGNSGDQWSDLLGSP-MPSRSFK 277 (286)
Q Consensus 250 ~~Gy~i~~~IGDq~sDl~ga~-~g~r~fk 277 (286)
. ....+++|||+..|+.+|+ +|.+++.
T Consensus 156 ~-~~~~~l~vgD~~~di~aA~~~G~~~i~ 183 (184)
T TIGR01993 156 V-DPERAIFFDDSARNIAAAKALGMKTVL 183 (184)
T ss_pred C-CccceEEEeCCHHHHHHHHHcCCEEee
Confidence 1 2346889999999999984 7887764
No 38
>PRK09449 dUMP phosphatase; Provisional
Probab=99.29 E-value=3.3e-11 Score=106.47 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=72.4
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc-ceEEEcCCCCCCchHHHhHHHHHHhHhhcCC-
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW-DKLILRSSDDHGKLAIIYKSEKRNEMVQEGY- 253 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~-~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy- 253 (286)
.+++||+.++++.|+ +|++++++||.+ +..+...|+++|+..+ +.++...+....||++.. ....+++.|.
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~---~~~~~~~~~~~ 166 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGF---TELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAI---FDYALEQMGNP 166 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCc---HHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHH---HHHHHHHcCCC
Confidence 578999999999999 689999999987 5566778899999764 555555544456877642 2233333342
Q ss_pred --eEEEEEcCCh-hhhccC-CCCCcEEEec
Q 023192 254 --RILGNSGDQW-SDLLGS-PMPSRSFKLP 279 (286)
Q Consensus 254 --~i~~~IGDq~-sDl~ga-~~g~r~fkLP 279 (286)
+.+++|||+. +|+.+| ++|.+++.+.
T Consensus 167 ~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 167 DRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 4699999998 799999 4798888775
No 39
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.29 E-value=1.9e-11 Score=104.24 Aligned_cols=127 Identities=14% Similarity=0.148 Sum_probs=86.8
Q ss_pred cEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCch----------
Q 023192 135 DAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSE---------- 204 (286)
Q Consensus 135 ~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e---------- 204 (286)
++++||.||||+.+.+. .|.... ....+++||+.+++++|+++|++++++||.+.
T Consensus 2 ~~~~~d~dg~l~~~~~~---------~~~~~~------~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~ 66 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS---------DFQVDA------LEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQAD 66 (161)
T ss_pred CEEEEeCCCCccccCCC---------ccccCC------HHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHH
Confidence 68999999999975331 111111 11357899999999999999999999999742
Q ss_pred --hhHHHHHHHHHhcCCCCcceEEEc-----CCCCCCchHHHhHHHHHHhHhhcC--CeEEEEEcCChhhhccCC-CCCc
Q 023192 205 --KQRSITVDNLINAGVRYWDKLILR-----SSDDHGKLAIIYKSEKRNEMVQEG--YRILGNSGDQWSDLLGSP-MPSR 274 (286)
Q Consensus 205 --~~r~~T~~~L~~~Gi~~~~~Lilr-----~~~~~~Kp~~~yKs~~r~~L~~~G--y~i~~~IGDq~sDl~ga~-~g~r 274 (286)
..+..+.+.|+++|+. ++.++.. .....+||.+.. ....++..| .+.+++|||+++|+.+|+ +|..
T Consensus 67 ~~~~~~~~~~~l~~~gl~-fd~ii~~~~~~~~~~~~~KP~~~~---~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~ 142 (161)
T TIGR01261 67 FDGPHNLMLQIFRSQGII-FDDVLICPHFPDDNCDCRKPKIKL---LEPYLKKNLIDKARSYVIGDRETDMQLAENLGIR 142 (161)
T ss_pred HHHHHHHHHHHHHHCCCc-eeEEEECCCCCCCCCCCCCCCHHH---HHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCe
Confidence 1245567778999997 7666654 233345776532 112222233 235999999999999984 7888
Q ss_pred EEEecC
Q 023192 275 SFKLPN 280 (286)
Q Consensus 275 ~fkLPN 280 (286)
++.+..
T Consensus 143 ~i~~~~ 148 (161)
T TIGR01261 143 GIQYDE 148 (161)
T ss_pred EEEECh
Confidence 776643
No 40
>PLN02940 riboflavin kinase
Probab=99.28 E-value=3e-11 Score=116.23 Aligned_cols=100 Identities=11% Similarity=0.058 Sum_probs=73.2
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHH-hcCCCCcceEEEc-CCCCCCchHHHhHHHHHHhHhhcC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLI-NAGVRYWDKLILR-SSDDHGKLAIIYKSEKRNEMVQEG 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~-~~Gi~~~~~Lilr-~~~~~~Kp~~~yKs~~r~~L~~~G 252 (286)
...++||+.++++.|+++|++++++||++ +..+...|+ ..|+..+...++. .+...+||++..- ...+++.|
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~---~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~---~~a~~~lg 164 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSP---RANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIF---LEAAKRLN 164 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCc---HHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHH---HHHHHHcC
Confidence 45789999999999999999999999998 455666776 5788765444444 4334568776432 22222222
Q ss_pred --CeEEEEEcCChhhhccC-CCCCcEEEecC
Q 023192 253 --YRILGNSGDQWSDLLGS-PMPSRSFKLPN 280 (286)
Q Consensus 253 --y~i~~~IGDq~sDl~ga-~~g~r~fkLPN 280 (286)
...+++|||+..|+.+| ++|.+++.++.
T Consensus 165 v~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~ 195 (382)
T PLN02940 165 VEPSNCLVIEDSLPGVMAGKAAGMEVIAVPS 195 (382)
T ss_pred CChhHEEEEeCCHHHHHHHHHcCCEEEEECC
Confidence 24688999999999998 47999998875
No 41
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.28 E-value=4.7e-11 Score=105.07 Aligned_cols=101 Identities=10% Similarity=0.047 Sum_probs=71.3
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCC-CCCchHHHhHHHHHHhHhhcCC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSD-DHGKLAIIYKSEKRNEMVQEGY 253 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~-~~~Kp~~~yKs~~r~~L~~~Gy 253 (286)
...++||+.++++.|+++|++++++||..+ ......|+.+|+..+...+..... ...||.+..-....+.+. ...
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~---~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~-~~~ 166 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPT---PFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLG-LDP 166 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcC-CCh
Confidence 467999999999999999999999999984 455678888999776555554433 345665432112222222 123
Q ss_pred eEEEEEcCChhhhccCC-CCCcEEEec
Q 023192 254 RILGNSGDQWSDLLGSP-MPSRSFKLP 279 (286)
Q Consensus 254 ~i~~~IGDq~sDl~ga~-~g~r~fkLP 279 (286)
+.+++|||+.+|+.+++ +|..++.++
T Consensus 167 ~~~i~igD~~~Di~~a~~~g~~~i~v~ 193 (226)
T PRK13222 167 EEMLFVGDSRNDIQAARAAGCPSVGVT 193 (226)
T ss_pred hheEEECCCHHHHHHHHHCCCcEEEEC
Confidence 46889999999999985 677777765
No 42
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.28 E-value=3.6e-11 Score=103.31 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=80.6
Q ss_pred cEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchh---------
Q 023192 135 DAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEK--------- 205 (286)
Q Consensus 135 ~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~--------- 205 (286)
++++||.||||+...+|. ..++ ...++||+.+++++|+++|++++++||.+..
T Consensus 2 ~~~~~D~Dgtl~~~~~~~------------~~~~------~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~ 63 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYV------------HEID------NFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQ 63 (176)
T ss_pred CEEEEeCCCCEeCCCCCC------------CCHH------HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHH
Confidence 689999999998543321 1122 3568999999999999999999999999841
Q ss_pred ---hHHHHHHHHHhcCCCCcceEEEcC-----------CCCCCchHHHhHHHHHHhHhhcC--CeEEEEEcCChhhhccC
Q 023192 206 ---QRSITVDNLINAGVRYWDKLILRS-----------SDDHGKLAIIYKSEKRNEMVQEG--YRILGNSGDQWSDLLGS 269 (286)
Q Consensus 206 ---~r~~T~~~L~~~Gi~~~~~Lilr~-----------~~~~~Kp~~~yKs~~r~~L~~~G--y~i~~~IGDq~sDl~ga 269 (286)
.+......|.+.|+. ++.++... ....+||++.. ....+++.| .+.+++|||+++|+.+|
T Consensus 64 ~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~---~~~a~~~~~~~~~~~v~VGDs~~Di~aA 139 (176)
T TIGR00213 64 FEQLTEWMDWSLAERDVD-LDGIYYCPHHPEGVEEFRQVCDCRKPKPGM---LLQARKELHIDMAQSYMVGDKLEDMQAG 139 (176)
T ss_pred HHHHHHHHHHHHHHcCCC-ccEEEECCCCCcccccccCCCCCCCCCHHH---HHHHHHHcCcChhhEEEEcCCHHHHHHH
Confidence 123344556777776 56655432 22245776632 222233333 24688999999999998
Q ss_pred C-CCCcE
Q 023192 270 P-MPSRS 275 (286)
Q Consensus 270 ~-~g~r~ 275 (286)
+ +|.++
T Consensus 140 ~~aG~~~ 146 (176)
T TIGR00213 140 VAAKVKT 146 (176)
T ss_pred HHCCCcE
Confidence 4 78876
No 43
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.27 E-value=5.6e-11 Score=101.97 Aligned_cols=99 Identities=12% Similarity=-0.021 Sum_probs=69.0
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEE-cCCCCCCchHHHhHHHHHHhHhhcCC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLIL-RSSDDHGKLAIIYKSEKRNEMVQEGY 253 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lil-r~~~~~~Kp~~~yKs~~r~~L~~~Gy 253 (286)
..+++|+ .+++..|++. ++++++||.+ +......|+++|+..|...+. .++....||++..-....+.+.. ..
T Consensus 86 ~~~~~~~-~e~L~~L~~~-~~l~I~T~~~---~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~-~~ 159 (188)
T PRK10725 86 SVEPLPL-IEVVKAWHGR-RPMAVGTGSE---SAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGV-QP 159 (188)
T ss_pred cCCCccH-HHHHHHHHhC-CCEEEEcCCc---hHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCC-CH
Confidence 3466775 6899999865 8999999987 566778899999987654444 44444568877432222222211 12
Q ss_pred eEEEEEcCChhhhccCC-CCCcEEEec
Q 023192 254 RILGNSGDQWSDLLGSP-MPSRSFKLP 279 (286)
Q Consensus 254 ~i~~~IGDq~sDl~ga~-~g~r~fkLP 279 (286)
+.+++|||+..|+.+|+ +|.+++.+.
T Consensus 160 ~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 160 TQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred HHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 35889999999999985 788888764
No 44
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.27 E-value=6e-11 Score=100.75 Aligned_cols=118 Identities=20% Similarity=0.241 Sum_probs=83.4
Q ss_pred EEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHH
Q 023192 136 AWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLI 215 (286)
Q Consensus 136 avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~ 215 (286)
.|++||||||+++... |. ..+ ..++....|++.+++++++++|++++++|||+..+...|.+||.
T Consensus 1 iVisDIDGTL~~sd~~------~~-~~~--------~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~ 65 (157)
T smart00775 1 IVISDIDGTITKSDVL------GH-VVP--------IIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLS 65 (157)
T ss_pred CEEEecCCCCcccccc------cc-ccc--------ccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHH
Confidence 3799999999965310 00 000 01124557999999999999999999999999998889999999
Q ss_pred h-----cCCCCcceEEEcCCCCC--------CchHHHhHHHHHHhHhh----cCCeEEEEEcCChhhhccC
Q 023192 216 N-----AGVRYWDKLILRSSDDH--------GKLAIIYKSEKRNEMVQ----EGYRILGNSGDQWSDLLGS 269 (286)
Q Consensus 216 ~-----~Gi~~~~~Lilr~~~~~--------~Kp~~~yKs~~r~~L~~----~Gy~i~~~IGDq~sDl~ga 269 (286)
+ ++++. ..+++++...- .+....+|....+.|.+ .+...++.+||..+|+...
T Consensus 66 ~~~~~~~~lp~-g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y 135 (157)
T smart00775 66 QIKQDGHNLPH-GPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISY 135 (157)
T ss_pred HhhhccccCCC-ceEEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHH
Confidence 9 45662 46777765321 11122467666666665 3667888899999999774
No 45
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.26 E-value=4.5e-11 Score=101.41 Aligned_cols=97 Identities=14% Similarity=0.026 Sum_probs=67.6
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc-ceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW-DKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~-~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
.+++||+.++++.|+++|++++++||.+... ...+.+.|+..+ +.++.......+||++..-....+.+.. ...
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~----~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~-~~~ 158 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH----AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGL-KPE 158 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH----HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCC-Ccc
Confidence 5789999999999999999999999998433 333444788664 4455444444567776432222222221 235
Q ss_pred EEEEEcCChhhhccCC-CCCcEEE
Q 023192 255 ILGNSGDQWSDLLGSP-MPSRSFK 277 (286)
Q Consensus 255 i~~~IGDq~sDl~ga~-~g~r~fk 277 (286)
.+++|||+..|+.+|+ +|.+++.
T Consensus 159 ~~~~vgD~~~di~aA~~~G~~~i~ 182 (183)
T TIGR01509 159 ECLFVDDSPAGIEAAKAAGMHTVL 182 (183)
T ss_pred eEEEEcCCHHHHHHHHHcCCEEEe
Confidence 7899999999999985 7887764
No 46
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.25 E-value=2.2e-11 Score=104.28 Aligned_cols=123 Identities=15% Similarity=0.026 Sum_probs=81.1
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhh-------
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQ------- 206 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~------- 206 (286)
.+.++||+||||+.+.... .+ ..+++.| ..++||+.++|+.|+++|++++++||++...
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~---~~---~~~~~~~--------~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~ 78 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGK---VF---PTSASDW--------RFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAE 78 (166)
T ss_pred CcEEEEeCCCceEecCCCC---cc---cCChHHe--------EEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHH
Confidence 4689999999999643210 00 1123333 2478999999999999999999999987532
Q ss_pred --HHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcC----CeEEEEEcCCh--------hhhccCC-C
Q 023192 207 --RSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEG----YRILGNSGDQW--------SDLLGSP-M 271 (286)
Q Consensus 207 --r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G----y~i~~~IGDq~--------sDl~ga~-~ 271 (286)
...+...|+++|++ ++.++.......+||.+.. ....+++.| .+.+++|||+. +|+.+|+ +
T Consensus 79 ~~~~~i~~~l~~~gl~-~~~ii~~~~~~~~KP~p~~---~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~a 154 (166)
T TIGR01664 79 SFKNKIEAFLEKLKVP-IQVLAATHAGLYRKPMTGM---WEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNL 154 (166)
T ss_pred HHHHHHHHHHHHcCCC-EEEEEecCCCCCCCCccHH---HHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHC
Confidence 13467788999996 4444444443456776532 122222222 34699999996 6999985 5
Q ss_pred CCc
Q 023192 272 PSR 274 (286)
Q Consensus 272 g~r 274 (286)
|.+
T Consensus 155 Gi~ 157 (166)
T TIGR01664 155 GLE 157 (166)
T ss_pred CCC
Confidence 654
No 47
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.25 E-value=4.4e-11 Score=104.33 Aligned_cols=100 Identities=12% Similarity=0.026 Sum_probs=71.5
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhc-CCCC-cceEEEcCCCCCCchHHHhHHHHHHhHhhcC-
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINA-GVRY-WDKLILRSSDDHGKLAIIYKSEKRNEMVQEG- 252 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~-Gi~~-~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G- 252 (286)
.+++||+.++++.|+++|++++++||.+.. ....++... |+.. ++.++.......+||++..-.. .+++.|
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~---~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~---~~~~~~~ 156 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRL---HTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQH---VLQAEGF 156 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchh---hHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHH---HHHHcCC
Confidence 468899999999999999999999999843 334444443 5544 3556665555567887743222 222333
Q ss_pred -CeEEEEEcCChhhhccCC-CCCcEEEecCC
Q 023192 253 -YRILGNSGDQWSDLLGSP-MPSRSFKLPNP 281 (286)
Q Consensus 253 -y~i~~~IGDq~sDl~ga~-~g~r~fkLPNp 281 (286)
...+++|||+..|+.+|+ +|.+++.++++
T Consensus 157 ~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 157 SAADAVFFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred ChhHeEEeCCCHHHHHHHHHcCCEEEEecCC
Confidence 346899999999999984 89999988876
No 48
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.25 E-value=1.2e-11 Score=102.99 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=75.1
Q ss_pred cCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCC-cceEEEcCCCCCCchHHHhHHHHHHhHhhcC
Q 023192 174 AMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRY-WDKLILRSSDDHGKLAIIYKSEKRNEMVQEG 252 (286)
Q Consensus 174 ~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~-~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G 252 (286)
...+++|++.++++.|+++|++++++||.+ +......|+++|+.. ++.++...+....||++..-....+++.- .
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~---~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~-~ 149 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGS---RERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGI-P 149 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSE---HHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTS-S
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCC---cccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCC-C
Confidence 567999999999999999999999999998 566778888889875 45666666555567766432223333321 2
Q ss_pred CeEEEEEcCChhhhccCC-CCCcEEE
Q 023192 253 YRILGNSGDQWSDLLGSP-MPSRSFK 277 (286)
Q Consensus 253 y~i~~~IGDq~sDl~ga~-~g~r~fk 277 (286)
-..+++|||+..|+.+|+ +|.+++-
T Consensus 150 p~~~~~vgD~~~d~~~A~~~G~~~i~ 175 (176)
T PF13419_consen 150 PEEILFVGDSPSDVEAAKEAGIKTIW 175 (176)
T ss_dssp GGGEEEEESSHHHHHHHHHTTSEEEE
T ss_pred cceEEEEeCCHHHHHHHHHcCCeEEe
Confidence 346899999999999984 7888764
No 49
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.24 E-value=5.1e-11 Score=103.66 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=67.0
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc-ceEEEcCCCCCCchHHHhHHHHHHhHhhcCC--
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW-DKLILRSSDDHGKLAIIYKSEKRNEMVQEGY-- 253 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~-~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy-- 253 (286)
.++||+.++++.|+++|++++++||.+. . ....|+..|+..+ +.++.......+||++.. .+..+++.|.
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~---~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~---~~~~~~~~~~~~ 177 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDS---R-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKI---FQEALERAGISP 177 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCch---h-HHHHHHHCCcHHhcceEEeecccCCCCCCHHH---HHHHHHHcCCCh
Confidence 6789999999999999999999999863 2 3567888898765 455555444556777632 2223333343
Q ss_pred eEEEEEcCCh-hhhccCC-CCCcEE
Q 023192 254 RILGNSGDQW-SDLLGSP-MPSRSF 276 (286)
Q Consensus 254 ~i~~~IGDq~-sDl~ga~-~g~r~f 276 (286)
..+++|||++ +|+.+|+ +|.+++
T Consensus 178 ~~~~~IgD~~~~Di~~A~~aG~~~i 202 (203)
T TIGR02252 178 EEALHIGDSLRNDYQGARAAGWRAL 202 (203)
T ss_pred hHEEEECCCchHHHHHHHHcCCeee
Confidence 4689999998 8999984 677654
No 50
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.24 E-value=2.2e-11 Score=101.30 Aligned_cols=128 Identities=17% Similarity=0.147 Sum_probs=77.5
Q ss_pred EEEEecCCCccCCchhhhhh------cCCC----------ccCC-----HHHHHHHHH-hcCCcccHHHHHHHHHHHHCC
Q 023192 136 AWIFDIDETLLSNLPYYQEH------GYGL----------EIFN-----PVEFDKWVE-KAMSPAIEASLKLYEEVLGLG 193 (286)
Q Consensus 136 avVfDIDgTLl~n~~~~~~~------~~g~----------~~f~-----~~~~~~wv~-~~~~~~~pgv~ell~~Lk~~G 193 (286)
+++||+||||+|+.+-+... .++. .++. ...|++... ......+||+.++++.|+++|
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~l~~L~~~g 80 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGEDFQALKALRGLAEELLYRIATSFEELLGYDAEEAYIRGAADLLKRLKEAG 80 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcccHHHHHHHHccChHHHHHHHHHHHHHhCcchhheeccCHHHHHHHHHHCc
Confidence 48999999999986543211 1111 0000 012222211 134566799999999999999
Q ss_pred CeEEEEcCCchhhHHHHHHHHHhcCCCCc-ceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCC
Q 023192 194 FKIFLLTGRSEKQRSITVDNLINAGVRYW-DKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSP 270 (286)
Q Consensus 194 ~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~-~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~ 270 (286)
++++++||++. ......++.+ +..+ +.++..++.. +||++..-.....++.-. . .+++|||+..|+.+|+
T Consensus 81 ~~~~i~T~~~~---~~~~~~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~-~-~~l~iGDs~~Di~aa~ 151 (154)
T TIGR01549 81 IKLGIISNGSL---RAQKLLLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLP-P-EVLHVGDNLNDIEGAR 151 (154)
T ss_pred CeEEEEeCCch---HHHHHHHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCC-C-CEEEEeCCHHHHHHHH
Confidence 99999999984 4444555554 3334 4455544433 677664322222222211 2 5899999999999875
No 51
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.23 E-value=7.2e-11 Score=101.68 Aligned_cols=126 Identities=17% Similarity=0.069 Sum_probs=84.9
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchh--------
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEK-------- 205 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~-------- 205 (286)
.++++||.||||..+...+ .+.++ ...++||+.+++++|+++|++++++||.+..
T Consensus 3 ~~~~~~d~~~t~~~~~~~~-----------~~~~~------~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~ 65 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGY-----------VKSPD------EWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEA 65 (181)
T ss_pred ccEEEEECCCCcccCCccc-----------cCCHH------HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHH
Confidence 4789999999997664222 11222 2468999999999999999999999998631
Q ss_pred h----HHHHHHHHHhcCCCCcceEEEcCC-----CCCCchHHHhHHHHHHhHhhcC--CeEEEEEcCChhhhccCC-CCC
Q 023192 206 Q----RSITVDNLINAGVRYWDKLILRSS-----DDHGKLAIIYKSEKRNEMVQEG--YRILGNSGDQWSDLLGSP-MPS 273 (286)
Q Consensus 206 ~----r~~T~~~L~~~Gi~~~~~Lilr~~-----~~~~Kp~~~yKs~~r~~L~~~G--y~i~~~IGDq~sDl~ga~-~g~ 273 (286)
+ ++.....|++.|+. ++.++.... ...+||++..-. ..++..| ...+++|||+.+|+.+|+ +|.
T Consensus 66 ~~~~~~~~~~~~l~~~g~~-f~~i~~~~~~~~~~~~~~KP~p~~~~---~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~ 141 (181)
T PRK08942 66 QLNALHEKMDWSLADRGGR-LDGIYYCPHHPEDGCDCRKPKPGMLL---SIAERLNIDLAGSPMVGDSLRDLQAAAAAGV 141 (181)
T ss_pred HHHHHHHHHHHHHHHcCCc-cceEEECCCCCCCCCcCCCCCHHHHH---HHHHHcCCChhhEEEEeCCHHHHHHHHHCCC
Confidence 0 23344556777874 566665432 134677764322 2222233 346899999999999984 788
Q ss_pred cEEEecC
Q 023192 274 RSFKLPN 280 (286)
Q Consensus 274 r~fkLPN 280 (286)
+++.++.
T Consensus 142 ~~i~v~~ 148 (181)
T PRK08942 142 TPVLVRT 148 (181)
T ss_pred eEEEEcC
Confidence 7776643
No 52
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=99.21 E-value=1.1e-10 Score=98.96 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=88.5
Q ss_pred EEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHH
Q 023192 136 AWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLI 215 (286)
Q Consensus 136 avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~ 215 (286)
.||+|||||++.+.- +|. -+. ..+.+...+|+.+++++++++|++++++|+|+..+...|..||.
T Consensus 1 VVvsDIDGTiT~SD~------~G~-i~~--------~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~ 65 (157)
T PF08235_consen 1 VVVSDIDGTITKSDV------LGH-ILP--------ILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLA 65 (157)
T ss_pred CEEEeccCCcCccch------hhh-hhh--------ccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHH
Confidence 389999999996621 000 000 02345677899999999999999999999999999999999999
Q ss_pred hc-----CCCCcceEEEcCCC---------CCCchHHHhHHHHHHhHhhc----CCeEEEEEcCChhhhccC
Q 023192 216 NA-----GVRYWDKLILRSSD---------DHGKLAIIYKSEKRNEMVQE----GYRILGNSGDQWSDLLGS 269 (286)
Q Consensus 216 ~~-----Gi~~~~~Lilr~~~---------~~~Kp~~~yKs~~r~~L~~~----Gy~i~~~IGDq~sDl~ga 269 (286)
++ ++|. ..+++.++. -.++| ..||....+.|... +-.+.+.+|...+|+.+.
T Consensus 66 ~~~q~~~~lP~-Gpv~~sP~~l~~al~rEvi~~~p-~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY 135 (157)
T PF08235_consen 66 QHQQQGHNLPD-GPVLLSPDSLFSALHREVISKDP-EEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAY 135 (157)
T ss_pred HHHhCCccCCC-CCEEECCcchhhhhhccccccCh-HHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHH
Confidence 99 8883 455666432 11223 36898888888865 667899999999999875
No 53
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.19 E-value=1.1e-10 Score=99.02 Aligned_cols=110 Identities=24% Similarity=0.310 Sum_probs=85.0
Q ss_pred cCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHH
Q 023192 130 RGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSI 209 (286)
Q Consensus 130 ~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~ 209 (286)
...|.+++++|+|.||+. |+ ...+-|.+.+.+..++++|++++++||.++ .-
T Consensus 24 ~~~Gikgvi~DlDNTLv~-------------------wd------~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e---~R 75 (175)
T COG2179 24 KAHGIKGVILDLDNTLVP-------------------WD------NPDATPELRAWLAELKEAGIKVVVVSNNKE---SR 75 (175)
T ss_pred HHcCCcEEEEeccCceec-------------------cc------CCCCCHHHHHHHHHHHhcCCEEEEEeCCCH---HH
Confidence 446789999999999982 11 356778899999999999999999999884 44
Q ss_pred HHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe--EEEEEcCCh-hhhccCC-CCCcEEEe
Q 023192 210 TVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR--ILGNSGDQW-SDLLGSP-MPSRSFKL 278 (286)
Q Consensus 210 T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~--i~~~IGDq~-sDl~ga~-~g~r~fkL 278 (286)
...+..++|++. +.+. .||.. ...++++++.+.. .+++||||. +|+.|++ +|.+++.+
T Consensus 76 V~~~~~~l~v~f----i~~A----~KP~~---~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV 137 (175)
T COG2179 76 VARAAEKLGVPF----IYRA----KKPFG---RAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILV 137 (175)
T ss_pred HHhhhhhcCCce----eecc----cCccH---HHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEE
Confidence 677889999972 2221 34433 4667777766654 699999999 9999996 79998875
No 54
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.19 E-value=1.5e-10 Score=100.46 Aligned_cols=136 Identities=13% Similarity=0.081 Sum_probs=80.3
Q ss_pred ccEEEEecCCCccCCch----hhhhhcCC---------Cc---------cCCHHH----HHHHHHh---cCCcccHHHHH
Q 023192 134 KDAWIFDIDETLLSNLP----YYQEHGYG---------LE---------IFNPVE----FDKWVEK---AMSPAIEASLK 184 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~----~~~~~~~g---------~~---------~f~~~~----~~~wv~~---~~~~~~pgv~e 184 (286)
+++|+||+||||+|..+ ...++++. .. +.+.+. +..+... ...+++||+.+
T Consensus 2 ~k~viFDlDGTLiD~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~e 81 (197)
T PHA02597 2 KPTILTDVDGVLLSWQSGLPYFAQKYNIPTDHILKMIQDERFRDPGELFGCDQELAKKLIEKYNNSDFIRYLSAYDDALD 81 (197)
T ss_pred CcEEEEecCCceEchhhccHHHHHhcCCCHHHHHHHHhHhhhcCHHHHhcccHHHHHHHhhhhhHHHHHHhccCCCCHHH
Confidence 47899999999999755 22232221 00 011111 2222211 34578999999
Q ss_pred HHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCC-----cceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEE
Q 023192 185 LYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRY-----WDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNS 259 (286)
Q Consensus 185 ll~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~-----~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~I 259 (286)
++++|++++ +++++|+.+..... ..++.+|+.. ++.++.... ..+||.. ....+++.|.+.+++|
T Consensus 82 ~L~~L~~~~-~~~i~Tn~~~~~~~---~~~~~~~l~~~f~~~f~~i~~~~~-~~~kp~~-----~~~a~~~~~~~~~v~v 151 (197)
T PHA02597 82 VINKLKEDY-DFVAVTALGDSIDA---LLNRQFNLNALFPGAFSEVLMCGH-DESKEKL-----FIKAKEKYGDRVVCFV 151 (197)
T ss_pred HHHHHHhcC-CEEEEeCCccchhH---HHHhhCCHHHhCCCcccEEEEecc-CcccHHH-----HHHHHHHhCCCcEEEe
Confidence 999999874 67888887643222 2223334432 234444433 3445543 2223333344578899
Q ss_pred cCChhhhccCC-C--CCcEEEec
Q 023192 260 GDQWSDLLGSP-M--PSRSFKLP 279 (286)
Q Consensus 260 GDq~sDl~ga~-~--g~r~fkLP 279 (286)
||+.+|+.+|+ + |..++.+.
T Consensus 152 gDs~~di~aA~~a~~Gi~~i~~~ 174 (197)
T PHA02597 152 DDLAHNLDAAHEALSQLPVIHML 174 (197)
T ss_pred CCCHHHHHHHHHHHcCCcEEEec
Confidence 99999999985 6 88888763
No 55
>PRK06769 hypothetical protein; Validated
Probab=99.17 E-value=4.4e-11 Score=102.83 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=79.3
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhh-----H
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQ-----R 207 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~-----r 207 (286)
+.++++||.||||--. .++ . ......++||+.+++++|+++|++++++||.++.. .
T Consensus 3 ~~~~~~~d~d~~~~~~-~~~---------~---------~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~ 63 (173)
T PRK06769 3 NIQAIFIDRDGTIGGD-TTI---------H---------YPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATI 63 (173)
T ss_pred CCcEEEEeCCCcccCC-CCC---------C---------CHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCH
Confidence 5679999999999411 000 0 01135789999999999999999999999987421 1
Q ss_pred HHHHHHHHhcCCCCcc-eEEEcCC-CCCCchHHHhHHHHHHhHhhcC--CeEEEEEcCChhhhccCC-CCCcEEEe
Q 023192 208 SITVDNLINAGVRYWD-KLILRSS-DDHGKLAIIYKSEKRNEMVQEG--YRILGNSGDQWSDLLGSP-MPSRSFKL 278 (286)
Q Consensus 208 ~~T~~~L~~~Gi~~~~-~Lilr~~-~~~~Kp~~~yKs~~r~~L~~~G--y~i~~~IGDq~sDl~ga~-~g~r~fkL 278 (286)
..+...|+..|+..+. .....++ ...+||++..- ...+++.| .+.+++|||++.|+.+|+ +|.+++.+
T Consensus 64 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~---~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v 136 (173)
T PRK06769 64 ADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGML---LQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILV 136 (173)
T ss_pred HHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHH---HHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEE
Confidence 2344557778875421 1111122 23467766321 12222223 346999999999999884 67777755
No 56
>PLN02954 phosphoserine phosphatase
Probab=99.17 E-value=3.3e-10 Score=100.06 Aligned_cols=138 Identities=18% Similarity=0.245 Sum_probs=84.7
Q ss_pred CccEEEEecCCCccCCchhhh---hhcC-------------CCccCC-------------HHHHHHHHHhcCCcccHHHH
Q 023192 133 GKDAWIFDIDETLLSNLPYYQ---EHGY-------------GLEIFN-------------PVEFDKWVEKAMSPAIEASL 183 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~---~~~~-------------g~~~f~-------------~~~~~~wv~~~~~~~~pgv~ 183 (286)
.+++|+||+||||+++..+.. .++. |..++. .+.+.+++......++||+.
T Consensus 11 ~~k~viFDfDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~~ 90 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEFLEKRPPRLSPGIP 90 (224)
T ss_pred cCCEEEEeCCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHccCCCCccHH
Confidence 378999999999998743211 1111 111111 11233333333356789999
Q ss_pred HHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCC--c-ce-EEEcC-------CC------CCCchHHHhHHHHHH
Q 023192 184 KLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRY--W-DK-LILRS-------SD------DHGKLAIIYKSEKRN 246 (286)
Q Consensus 184 ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~--~-~~-Lilr~-------~~------~~~Kp~~~yKs~~r~ 246 (286)
++++.|+++|++++++|+.. +..+...|+.+|++. + .. +.... .. ..+||. .+++
T Consensus 91 e~l~~l~~~g~~~~IvS~~~---~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~-----~i~~ 162 (224)
T PLN02954 91 ELVKKLRARGTDVYLVSGGF---RQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAE-----AVQH 162 (224)
T ss_pred HHHHHHHHCCCEEEEECCCc---HHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHH-----HHHH
Confidence 99999999999999999998 566778889999962 2 11 11111 10 112332 2222
Q ss_pred hHhhcCCeEEEEEcCChhhhccCCCCCcEEEe
Q 023192 247 EMVQEGYRILGNSGDQWSDLLGSPMPSRSFKL 278 (286)
Q Consensus 247 ~L~~~Gy~i~~~IGDq~sDl~ga~~g~r~fkL 278 (286)
.+...|...+++|||+.+|+.++++|...+.+
T Consensus 163 ~~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~ 194 (224)
T PLN02954 163 IKKKHGYKTMVMIGDGATDLEARKPGGADLFI 194 (224)
T ss_pred HHHHcCCCceEEEeCCHHHHHhhhcCCCCEEE
Confidence 23334566789999999999998754444333
No 57
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.16 E-value=2.2e-10 Score=100.42 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=68.9
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCC-cceEEEcCCCCCCchHHHhHHHHHHhHhhcC-
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRY-WDKLILRSSDDHGKLAIIYKSEKRNEMVQEG- 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~-~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G- 252 (286)
..+++||+.++++.|+++|++++++||.+..... ....+...|+.. ++.++.......+||++..- ...+.+.|
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~-~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~---~~~~~~~g~ 167 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHS-AEEALLPGDIMALFDAVVESCLEGLRKPDPRIY---QLMLERLGV 167 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccch-hhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHH---HHHHHHcCC
Confidence 3568999999999999999999999998643221 233344456644 45555444334467776421 12222233
Q ss_pred -CeEEEEEcCChhhhccCC-CCCcEEEecCC
Q 023192 253 -YRILGNSGDQWSDLLGSP-MPSRSFKLPNP 281 (286)
Q Consensus 253 -y~i~~~IGDq~sDl~ga~-~g~r~fkLPNp 281 (286)
...+++|||...|+.+|+ +|.+++.+.++
T Consensus 168 ~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 168 APEECVFLDDLGSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred CHHHeEEEcCCHHHHHHHHHcCCEEEEECCH
Confidence 235888999999999984 79998887654
No 58
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.15 E-value=3.7e-10 Score=97.48 Aligned_cols=105 Identities=12% Similarity=-0.016 Sum_probs=66.5
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc-eEEEcCCCCCCchHH------HhHHHHHHh
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD-KLILRSSDDHGKLAI------IYKSEKRNE 247 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~-~Lilr~~~~~~Kp~~------~yKs~~r~~ 247 (286)
..+++||+.++++.|+++|++++++||.. +..+...++.+|+..+. ..+........+|+. .-|......
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~---~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~ 154 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGI---MCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVER 154 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCc---HHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHH
Confidence 46789999999999999999999999998 56677888888986532 222221111111111 012222222
Q ss_pred -HhhcC--CeEEEEEcCChhhhccCCCCCcEEEe-cCCC
Q 023192 248 -MVQEG--YRILGNSGDQWSDLLGSPMPSRSFKL-PNPM 282 (286)
Q Consensus 248 -L~~~G--y~i~~~IGDq~sDl~ga~~g~r~fkL-PNp~ 282 (286)
+++.| ...+++|||+.+|+..+......|.+ |+|.
T Consensus 155 ~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~ 193 (201)
T TIGR01491 155 LKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDEGH 193 (201)
T ss_pred HHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCcc
Confidence 22223 34589999999999988643344555 7663
No 59
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.15 E-value=2e-10 Score=101.32 Aligned_cols=95 Identities=9% Similarity=-0.033 Sum_probs=68.4
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc-eEEEcC-CCCCCchHHHhHHHHHHhHhhcC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD-KLILRS-SDDHGKLAIIYKSEKRNEMVQEG 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~-~Lilr~-~~~~~Kp~~~yKs~~r~~L~~~G 252 (286)
...++||+.++++.| +++++++||.+ +..+...|+.+|+..|+ ..+... +....||++..- ...+++.|
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~---~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~---~~a~~~~~ 156 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGP---VSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALM---FHAAEAMN 156 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCc---HHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHH---HHHHHHcC
Confidence 467889999999888 59999999987 56677889999997765 344443 344567776432 22223333
Q ss_pred C--eEEEEEcCChhhhccCC-CCCcEEEe
Q 023192 253 Y--RILGNSGDQWSDLLGSP-MPSRSFKL 278 (286)
Q Consensus 253 y--~i~~~IGDq~sDl~ga~-~g~r~fkL 278 (286)
. +.+++|||+++|+.+|+ +|.+++.+
T Consensus 157 ~~p~~~l~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 157 VNVENCILVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred CCHHHeEEEeCcHhhHHHHHHCCCEEEEE
Confidence 2 35899999999999984 78888766
No 60
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.13 E-value=5.1e-10 Score=98.21 Aligned_cols=97 Identities=13% Similarity=0.198 Sum_probs=69.5
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc-ceEEEcCCCCCCchHHHhHHHHHHhHhhc-C
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW-DKLILRSSDDHGKLAIIYKSEKRNEMVQE-G 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~-~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~-G 252 (286)
...++||+.++++.|+++ ++++++||.. +......|+++|+..+ +.++........||++..- ...+++. |
T Consensus 95 ~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~---~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~---~~~~~~~~~ 167 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK-FRLYIVTNGV---RETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIF---NYALERMPK 167 (224)
T ss_pred cCeeCccHHHHHHHHHhc-CcEEEEeCCc---hHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHH---HHHHHHhcC
Confidence 357899999999999999 9999999987 4555677888999775 4455444444567766321 1222222 3
Q ss_pred C--eEEEEEcCCh-hhhccCC-CCCcEEEe
Q 023192 253 Y--RILGNSGDQW-SDLLGSP-MPSRSFKL 278 (286)
Q Consensus 253 y--~i~~~IGDq~-sDl~ga~-~g~r~fkL 278 (286)
. ..+++|||+. +|+.+|+ +|..++.+
T Consensus 168 ~~~~~~v~igD~~~~di~~A~~~G~~~i~~ 197 (224)
T TIGR02254 168 FSKEEVLMIGDSLTADIKGGQNAGLDTCWM 197 (224)
T ss_pred CCchheEEECCCcHHHHHHHHHCCCcEEEE
Confidence 2 3599999997 8999984 68777665
No 61
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.12 E-value=6.4e-10 Score=97.88 Aligned_cols=93 Identities=15% Similarity=0.007 Sum_probs=60.9
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceE-E----------EcCCCC--CCchHHHhH
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKL-I----------LRSSDD--HGKLAIIYK 241 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~L-i----------lr~~~~--~~Kp~~~yK 241 (286)
..+++||+.++++.|+++|++++++||.. +......++..|+..+... + ..+... .+|+.. ++
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~ 158 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGF---DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKT-LL 158 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHH-HH
Confidence 45789999999999999999999999987 4566677888898764311 1 011111 123332 22
Q ss_pred HHHHHhHhhcC--CeEEEEEcCChhhhccCC-CCCcE
Q 023192 242 SEKRNEMVQEG--YRILGNSGDQWSDLLGSP-MPSRS 275 (286)
Q Consensus 242 s~~r~~L~~~G--y~i~~~IGDq~sDl~ga~-~g~r~ 275 (286)
..+++.| .+.+++|||+.+|+.++. +|...
T Consensus 159 ----~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i 191 (219)
T TIGR00338 159 ----ILLRKEGISPENTVAVGDGANDLSMIKAAGLGI 191 (219)
T ss_pred ----HHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeE
Confidence 1122223 346889999999999875 45543
No 62
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.11 E-value=4.5e-10 Score=100.92 Aligned_cols=93 Identities=9% Similarity=0.016 Sum_probs=64.7
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc-eEEEcCCCCCCchHHHhHHHHHHhHhhcCC-
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD-KLILRSSDDHGKLAIIYKSEKRNEMVQEGY- 253 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~-~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy- 253 (286)
..++||+.++|+.|++. ++++++||.+.. ++..|+..|. .++........||++.. ....+.+.|.
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~--------~~~~gl~~~fd~i~~~~~~~~~KP~p~~---~~~a~~~~~~~ 179 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ--------PELFGLGDYFEFVLRAGPHGRSKPFSDM---YHLAAEKLNVP 179 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch--------HHHCCcHHhhceeEecccCCcCCCcHHH---HHHHHHHcCCC
Confidence 56789999999999875 999999997742 3667887764 44444444456776632 1122222332
Q ss_pred -eEEEEEcCCh-hhhccC-CCCCcEEEecC
Q 023192 254 -RILGNSGDQW-SDLLGS-PMPSRSFKLPN 280 (286)
Q Consensus 254 -~i~~~IGDq~-sDl~ga-~~g~r~fkLPN 280 (286)
+.+++|||++ .|+.|| ++|.+++-+..
T Consensus 180 ~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~ 209 (238)
T PRK10748 180 IGEILHVGDDLTTDVAGAIRCGMQACWINP 209 (238)
T ss_pred hhHEEEEcCCcHHHHHHHHHCCCeEEEEcC
Confidence 3699999995 999998 47888887753
No 63
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.10 E-value=3e-10 Score=98.84 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=60.9
Q ss_pred cCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcce--EEEcCCC-----CCCchHHHhHHHHHH
Q 023192 174 AMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK--LILRSSD-----DHGKLAIIYKSEKRN 246 (286)
Q Consensus 174 ~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~--Lilr~~~-----~~~Kp~~~yKs~~r~ 246 (286)
...+++||+.++++.|+++ ++++++|+.. +..+...|.++|++.+.. +...+++ ...+|. .|....+
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~---~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~--~k~~~l~ 138 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTF---YEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPD--GKRQAVK 138 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCc---HHHHHHHHHHcCCchhhcceEEECCCCeEECccccccc--hHHHHHH
Confidence 3467899999999999999 9999999998 567778889999876422 2111111 011222 2444444
Q ss_pred hHhhcCCeEEEEEcCChhhhccC
Q 023192 247 EMVQEGYRILGNSGDQWSDLLGS 269 (286)
Q Consensus 247 ~L~~~Gy~i~~~IGDq~sDl~ga 269 (286)
.+... ...+++|||+.+|+..+
T Consensus 139 ~~~~~-~~~~v~iGDs~~D~~~~ 160 (205)
T PRK13582 139 ALKSL-GYRVIAAGDSYNDTTML 160 (205)
T ss_pred HHHHh-CCeEEEEeCCHHHHHHH
Confidence 55443 35789999999998665
No 64
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.05 E-value=4.8e-10 Score=94.61 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=72.3
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
+++++||+||||+++..++... +. + ...| ...++. .+++|+++|++++++||++ +..+...
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~--~~--~-~~~~---------~~~~~~--~i~~Lk~~G~~i~IvTn~~---~~~~~~~ 61 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNN--GE--E-IKAF---------NVRDGY--GIRCALKSGIEVAIITGRK---AKLVEDR 61 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCC--Cc--E-EEEE---------echhHH--HHHHHHHCCCEEEEEECCC---CHHHHHH
Confidence 3689999999999875543211 00 0 0000 011122 7889999999999999998 4567788
Q ss_pred HHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCC-CCCcEEEecC
Q 023192 214 LINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSP-MPSRSFKLPN 280 (286)
Q Consensus 214 L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~-~g~r~fkLPN 280 (286)
|+++|+..+.. . ..+||... ....+++. ...+.+++|||+.+|+..++ +|. .|.+.|
T Consensus 62 l~~~gi~~~~~---~---~~~k~~~~--~~~~~~~~-~~~~~~~~vGDs~~D~~~~~~ag~-~~~v~~ 119 (154)
T TIGR01670 62 CKTLGITHLYQ---G---QSNKLIAF--SDILEKLA-LAPENVAYIGDDLIDWPVMEKVGL-SVAVAD 119 (154)
T ss_pred HHHcCCCEEEe---c---ccchHHHH--HHHHHHcC-CCHHHEEEECCCHHHHHHHHHCCC-eEecCC
Confidence 99999974321 1 12343332 12222211 12346999999999999875 344 466654
No 65
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.04 E-value=1.9e-09 Score=91.92 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=66.0
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCC-C---------CCc-------hH
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSD-D---------HGK-------LA 237 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~-~---------~~K-------p~ 237 (286)
..++.|++.++++.|+++|++++++|+.. +......++..|+..+...+..... . ..+ +.
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 146 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGN---DFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPC 146 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCc---HHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCC
Confidence 36889999999999999999999999997 4566777888898765333332111 0 000 01
Q ss_pred HHhHHHHHHhHhhcCCeEEEEEcCChhhhccCCCCCcEE
Q 023192 238 IIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSPMPSRSF 276 (286)
Q Consensus 238 ~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~~g~r~f 276 (286)
...|....+.+....++.+++|||..+|+.+|......|
T Consensus 147 g~~K~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 147 GCCKGKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred CCCHHHHHHHHHhhcCceEEEECCCcchhchHhcCCccc
Confidence 112444444444321567899999999999987554444
No 66
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.04 E-value=3.8e-10 Score=97.54 Aligned_cols=137 Identities=11% Similarity=0.005 Sum_probs=85.3
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHH-HH---HhcCCcccHHHHHHHHHHHHCCCeEEEEcCC-chhhHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDK-WV---EKAMSPAIEASLKLYEEVLGLGFKIFLLTGR-SEKQRS 208 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~-wv---~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR-~e~~r~ 208 (286)
+..+|||+|+|+.+..-+.-.+ .++.+.+-++ -| .....+++||+.++++.|+++|++++++||+ + +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~---~~ 74 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLG----GPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDV---PE 74 (174)
T ss_pred CcEEEEeCCCCCcCcccccccC----CCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCC---hH
Confidence 4679999999997542221111 1111000000 00 0124688999999999999999999999998 5 45
Q ss_pred HHHHHHHhcCCC---------CcceEEEcCCC-CCCchHHHhHHHHHHhHhh-----cCCeEEEEEcCChhhhccCC-CC
Q 023192 209 ITVDNLINAGVR---------YWDKLILRSSD-DHGKLAIIYKSEKRNEMVQ-----EGYRILGNSGDQWSDLLGSP-MP 272 (286)
Q Consensus 209 ~T~~~L~~~Gi~---------~~~~Lilr~~~-~~~Kp~~~yKs~~r~~L~~-----~Gy~i~~~IGDq~sDl~ga~-~g 272 (286)
.+...|+..|+. .+...+..... .+.||.+.. .+.+.+ ...+.+++|||+..|+.+|+ +|
T Consensus 75 ~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i----~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aG 150 (174)
T TIGR01685 75 WAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMI----LQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYG 150 (174)
T ss_pred HHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHH----HHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhC
Confidence 566778888886 55444443332 223333321 122221 12347999999999999984 78
Q ss_pred CcEEEecCC
Q 023192 273 SRSFKLPNP 281 (286)
Q Consensus 273 ~r~fkLPNp 281 (286)
.+++.++..
T Consensus 151 i~~i~v~~g 159 (174)
T TIGR01685 151 VTSCYCPSG 159 (174)
T ss_pred CEEEEcCCC
Confidence 988888653
No 67
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=2.2e-09 Score=115.12 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=74.1
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC-C-cceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR-Y-WDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~-~-~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
.++||+.++++.|+++|++++++||.. +..+...|++.|+. . ++.++...+....||++..-....+.+.. ...
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~---~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv-~p~ 236 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSAD---RIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGV-PTS 236 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCc---HHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCc-Ccc
Confidence 479999999999999999999999987 55667788999995 4 45555554445568776422222222221 134
Q ss_pred EEEEEcCChhhhccCC-CCCcEEEecCC
Q 023192 255 ILGNSGDQWSDLLGSP-MPSRSFKLPNP 281 (286)
Q Consensus 255 i~~~IGDq~sDl~ga~-~g~r~fkLPNp 281 (286)
.+++|||+..|+++|+ +|++++.+...
T Consensus 237 e~v~IgDs~~Di~AA~~aGm~~I~v~~~ 264 (1057)
T PLN02919 237 ECVVIEDALAGVQAARAAGMRCIAVTTT 264 (1057)
T ss_pred cEEEEcCCHHHHHHHHHcCCEEEEECCC
Confidence 6899999999999984 79999888653
No 68
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=99.01 E-value=1.3e-09 Score=93.51 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=92.2
Q ss_pred cCCCccEEEEecCCCccCCchhhhh--hcCCCccCC---HHHHHHHHHhc---CCcccHHHHHHHHHHHHCCCeEEEEcC
Q 023192 130 RGDGKDAWIFDIDETLLSNLPYYQE--HGYGLEIFN---PVEFDKWVEKA---MSPAIEASLKLYEEVLGLGFKIFLLTG 201 (286)
Q Consensus 130 ~~~~~~avVfDIDgTLl~n~~~~~~--~~~g~~~f~---~~~~~~wv~~~---~~~~~pgv~ell~~Lk~~G~~Ii~vTg 201 (286)
.+..+-+|-||||+|+|-++|++-. ..|....+| ...|.+-+..+ ...|.+-+.+|+..-+++|-+|+|+||
T Consensus 59 eG~~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTG 138 (237)
T COG3700 59 EGRPPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTG 138 (237)
T ss_pred cCCCCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEec
Confidence 3455669999999999988887632 112222222 11222223332 345667889999999999999999999
Q ss_pred CchhhHHHHHHHHHh-cCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCC----CCCcEE
Q 023192 202 RSEKQRSITVDNLIN-AGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSP----MPSRSF 276 (286)
Q Consensus 202 R~e~~r~~T~~~L~~-~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~----~g~r~f 276 (286)
|+...-+.+.+.|.+ +.+..-..++..++ +.||.. ..+-..+++.+ +-+..||+.+|+.+++ .|.|..
T Consensus 139 Rt~gk~d~vsk~Lak~F~i~~m~pv~f~Gd--k~k~~q---y~Kt~~i~~~~--~~IhYGDSD~Di~AAkeaG~RgIRil 211 (237)
T COG3700 139 RTPGKTDTVSKTLAKNFHITNMNPVIFAGD--KPKPGQ---YTKTQWIQDKN--IRIHYGDSDNDITAAKEAGARGIRIL 211 (237)
T ss_pred CCCCcccccchhHHhhcccCCCcceeeccC--CCCccc---ccccHHHHhcC--ceEEecCCchhhhHHHhcCccceeEE
Confidence 997655555555654 35543334444433 223322 22334555544 5667999999998875 466666
Q ss_pred EecCCCC
Q 023192 277 KLPNPMY 283 (286)
Q Consensus 277 kLPNp~Y 283 (286)
.-||..|
T Consensus 212 RAaNSTy 218 (237)
T COG3700 212 RAANSTY 218 (237)
T ss_pred ecCCccC
Confidence 6688877
No 69
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.98 E-value=8.5e-10 Score=94.90 Aligned_cols=117 Identities=10% Similarity=0.042 Sum_probs=78.0
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
.+++|||+|||+.|..-|+.+.+-.-..|+.. .+ .-++.|+++|++++++||++ ...+...
T Consensus 7 i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~--------------D~--~~~~~L~~~Gi~laIiT~k~---~~~~~~~ 67 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIVINDEGIESRNFDIK--------------DG--MGVIVLQLCGIDVAIITSKK---SGAVRHR 67 (169)
T ss_pred CeEEEEeCceeeECCeEEEcCCCcEEEEEecc--------------hH--HHHHHHHHCCCEEEEEECCC---cHHHHHH
Confidence 68999999999999877765444322223311 11 12456788999999999998 5677889
Q ss_pred HHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcC--CeEEEEEcCChhhhccCCCCCcEEEecC
Q 023192 214 LINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEG--YRILGNSGDQWSDLLGSPMPSRSFKLPN 280 (286)
Q Consensus 214 L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G--y~i~~~IGDq~sDl~ga~~g~r~fkLPN 280 (286)
|+.+|+..|+.. .++||.. ++..+...| .+.+++|||+.+|+.+++.....|..+|
T Consensus 68 l~~lgi~~~f~~------~kpkp~~-----~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~n 125 (169)
T TIGR02726 68 AEELKIKRFHEG------IKKKTEP-----YAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGD 125 (169)
T ss_pred HHHCCCcEEEec------CCCCHHH-----HHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcC
Confidence 999999754331 1334433 222222233 2469999999999999865555677666
No 70
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.96 E-value=2.8e-09 Score=87.28 Aligned_cols=115 Identities=10% Similarity=-0.000 Sum_probs=68.1
Q ss_pred cEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCC-chhhHHHHHHH
Q 023192 135 DAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGR-SEKQRSITVDN 213 (286)
Q Consensus 135 ~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR-~e~~r~~T~~~ 213 (286)
+.++||+||||+..... ..+... + ....+++||+.++++.|+++|++++++|++ + +..+...
T Consensus 1 kli~~DlD~Tl~~~~~~---------~~~~~~----~-~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~---~~~~~~~ 63 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENI---------VVGEDP----I-IDLEVTIKEIRDKLQTLKKNGFLLALASYNDD---PHVAYEL 63 (128)
T ss_pred CEEEEeCCCCCCCCCcc---------cccCCc----c-hhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCC---HHHHHHH
Confidence 46899999999854110 000000 0 001168999999999999999999999999 5 3445556
Q ss_pred HHhcC-------CCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhcc
Q 023192 214 LINAG-------VRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 214 L~~~G-------i~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g 268 (286)
|+..| +..+...+.... ..+||....+...+.+. ......+++|||+..++..
T Consensus 64 l~~~~~~~~i~~l~~~f~~~~~~~-~~pkp~~~~~a~~~lg~-~~~p~~~l~igDs~~n~~~ 123 (128)
T TIGR01681 64 LKIFEDFGIIFPLAEYFDPLTIGY-WLPKSPRLVEIALKLNG-VLKPKSILFVDDRPDNNEE 123 (128)
T ss_pred HHhccccccchhhHhhhhhhhhcC-CCcHHHHHHHHHHHhcC-CCCcceEEEECCCHhHHHH
Confidence 66666 444333333222 22344432222222220 0123479999999998764
No 71
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.93 E-value=5.4e-09 Score=92.65 Aligned_cols=97 Identities=10% Similarity=0.042 Sum_probs=62.5
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceE-----EEcCCC-CCCchHHH---------
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKL-----ILRSSD-DHGKLAII--------- 239 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~L-----ilr~~~-~~~Kp~~~--------- 239 (286)
..++.||+.++++.|+++|++++++||.. +..+...|+++ +.. +.+ ...+.. ...||.+.
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~---~~~i~~il~~~-~~~-~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~ 146 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGGM---DFFVYPLLQGL-IPK-EQIYCNGSDFSGEYITITWPHPCDEHCQNHCG 146 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCCc---HHHHHHHHHHh-CCc-CcEEEeEEEecCCeeEEeccCCccccccccCC
Confidence 46899999999999999999999999998 55677777777 543 222 122211 11233221
Q ss_pred -hHHHHHHhHhhcCCeEEEEEcCChhhhccCCCCCcEEE
Q 023192 240 -YKSEKRNEMVQEGYRILGNSGDQWSDLLGSPMPSRSFK 277 (286)
Q Consensus 240 -yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~~g~r~fk 277 (286)
-|....+++... ...+++|||+.+|+.+++.+...|.
T Consensus 147 ~~K~~~l~~~~~~-~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 147 CCKPSLIRKLSDT-NDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred CchHHHHHHhccC-CCCEEEEeCCHHHHHHHHHCCccee
Confidence 133344444332 3368899999999999853333443
No 72
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.92 E-value=1.1e-08 Score=89.96 Aligned_cols=100 Identities=17% Similarity=0.163 Sum_probs=74.1
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc-ceEEEcCCCCCCchHHHhHHHHHHhHhhcC--
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW-DKLILRSSDDHGKLAIIYKSEKRNEMVQEG-- 252 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~-~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G-- 252 (286)
.++.|++.+.++.++++ ++++++||-. +....+.|++.|+..+ +.++........||++..-... +++.|
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~---~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~---~~~~g~~ 170 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGA---RPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYA---LEKLGVP 170 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCC---hHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHH---HHHcCCC
Confidence 68899999999999998 9999999965 4667888999998775 5666665555678877432222 23333
Q ss_pred CeEEEEEcCCh-hhhccC-CCCCcEEEecCCC
Q 023192 253 YRILGNSGDQW-SDLLGS-PMPSRSFKLPNPM 282 (286)
Q Consensus 253 y~i~~~IGDq~-sDl~ga-~~g~r~fkLPNp~ 282 (286)
...+++|||+. +|+.|| .+|++++-+..+.
T Consensus 171 p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~ 202 (229)
T COG1011 171 PEEALFVGDSLENDILGARALGMKTVWINRGG 202 (229)
T ss_pred cceEEEECCChhhhhHHHHhcCcEEEEECCCC
Confidence 34799999987 776887 4799887665443
No 73
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.90 E-value=1.6e-09 Score=90.80 Aligned_cols=125 Identities=13% Similarity=0.011 Sum_probs=79.5
Q ss_pred ccEEEEecCCCccCCch---hh-hhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHH
Q 023192 134 KDAWIFDIDETLLSNLP---YY-QEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSI 209 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~---~~-~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~ 209 (286)
+..+|+|+||||+.+.. .- ....++.. +. +..-.......++||+.++|+.|+ +|++++++|+.+ +..
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~---~~~ 73 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVP-VL---IDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGL---RMY 73 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEE-EE---eCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCc---HHH
Confidence 56899999999997632 00 00000000 00 000000123578999999999998 679999999998 556
Q ss_pred HHHHHHhcCCCC-c-ceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCC
Q 023192 210 TVDNLINAGVRY-W-DKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSP 270 (286)
Q Consensus 210 T~~~L~~~Gi~~-~-~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~ 270 (286)
+...|+..|+.. + +.++.+.+...+||. ..|...+... ..+.+++|||+..|+..++
T Consensus 74 ~~~il~~l~~~~~~f~~i~~~~d~~~~KP~-~~k~l~~l~~---~p~~~i~i~Ds~~~~~aa~ 132 (148)
T smart00577 74 ADPVLDLLDPKKYFGYRRLFRDECVFVKGK-YVKDLSLLGR---DLSNVIIIDDSPDSWPFHP 132 (148)
T ss_pred HHHHHHHhCcCCCEeeeEEECccccccCCe-EeecHHHcCC---ChhcEEEEECCHHHhhcCc
Confidence 667788888853 4 556666666667775 2232222221 2347999999999999986
No 74
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.90 E-value=9.1e-09 Score=81.11 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=52.5
Q ss_pred EEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh
Q 023192 137 WIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN 216 (286)
Q Consensus 137 vVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~ 216 (286)
++||+||||.. ...++||+.++++.|+++|.+++|+||++...+....+.|++
T Consensus 1 ~l~D~dGvl~~---------------------------g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~ 53 (101)
T PF13344_consen 1 FLFDLDGVLYN---------------------------GNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKK 53 (101)
T ss_dssp EEEESTTTSEE---------------------------TTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHH
T ss_pred CEEeCccEeEe---------------------------CCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHh
Confidence 68999999973 367999999999999999999999999998889999999999
Q ss_pred cCCCC-cceEEE
Q 023192 217 AGVRY-WDKLIL 227 (286)
Q Consensus 217 ~Gi~~-~~~Lil 227 (286)
+|++. .++++.
T Consensus 54 ~Gi~~~~~~i~t 65 (101)
T PF13344_consen 54 LGIPVDEDEIIT 65 (101)
T ss_dssp TTTT--GGGEEE
T ss_pred cCcCCCcCEEEC
Confidence 99984 234443
No 75
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=98.90 E-value=1.2e-08 Score=91.26 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=94.6
Q ss_pred CCccEEEEecCCCccCCchhhhhhc------CCC-----------------------ccC-CHHHHHHHHHh--------
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHG------YGL-----------------------EIF-NPVEFDKWVEK-------- 173 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~------~g~-----------------------~~f-~~~~~~~wv~~-------- 173 (286)
.+..+++||+|||+++|...|.+.. +|. ..+ ++-++.++..+
T Consensus 8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~~~ 87 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILDRL 87 (222)
T ss_pred cceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 3467899999999999987765421 221 000 12122222221
Q ss_pred -cCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh-cCCCCcceEEE--cCCCCCCchHHHhHHHHHHhHh
Q 023192 174 -AMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN-AGVRYWDKLIL--RSSDDHGKLAIIYKSEKRNEMV 249 (286)
Q Consensus 174 -~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~-~Gi~~~~~Lil--r~~~~~~Kp~~~yKs~~r~~L~ 249 (286)
......||+.+|++.|+.+|+++.++|++++.....-.++++. ... +.+.+. .+...++||++..-..-++.+.
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~--f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~ 165 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKN--FSHVVLGDDPEVKNGKPDPDIYLKAAKRLG 165 (222)
T ss_pred ccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHh--cCCCeecCCccccCCCCCchHHHHHHHhcC
Confidence 4678889999999999999999999999986555444444442 121 334444 2223457877642212222222
Q ss_pred hcCCeEEEEEcCChhhhccCC-CCCcEEEecCC
Q 023192 250 QEGYRILGNSGDQWSDLLGSP-MPSRSFKLPNP 281 (286)
Q Consensus 250 ~~Gy~i~~~IGDq~sDl~ga~-~g~r~fkLPNp 281 (286)
...-.-+++++|.+..+++++ +|+.++.+|++
T Consensus 166 ~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~ 198 (222)
T KOG2914|consen 166 VPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATP 198 (222)
T ss_pred CCCccceEEECCCHHHHHHHHhcCCeEEEecCC
Confidence 222256899999999999985 79999999983
No 76
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=98.87 E-value=8.8e-09 Score=88.27 Aligned_cols=109 Identities=18% Similarity=0.160 Sum_probs=75.7
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITV 211 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~ 211 (286)
.+.+++++|+|||++.. ....++|++.++++.|+++|++++++||.+. +..+.
T Consensus 23 ~~v~~vv~D~Dgtl~~~-------------------------~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~--~~~~~ 75 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYP-------------------------DHNEAYPALRDWIEELKAAGRKLLIVSNNAG--EQRAK 75 (170)
T ss_pred CCCCEEEEecCCccccC-------------------------CCCCcChhHHHHHHHHHHcCCEEEEEeCCch--HHHHH
Confidence 56789999999999832 1247889999999999999999999999973 23344
Q ss_pred HHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcC--CeEEEEEcCCh-hhhccCC-CCCcEEEe
Q 023192 212 DNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEG--YRILGNSGDQW-SDLLGSP-MPSRSFKL 278 (286)
Q Consensus 212 ~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G--y~i~~~IGDq~-sDl~ga~-~g~r~fkL 278 (286)
..++..|+..+ . ...||.+.. ....+++.| -..+++|||+. +|+.+|+ +|.+++.+
T Consensus 76 ~~~~~~gl~~~----~----~~~KP~p~~---~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v 135 (170)
T TIGR01668 76 AVEKALGIPVL----P----HAVKPPGCA---FRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILV 135 (170)
T ss_pred HHHHHcCCEEE----c----CCCCCChHH---HHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEE
Confidence 55567777421 1 123554432 112222223 23589999998 7999994 78887766
No 77
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.87 E-value=1.4e-08 Score=96.85 Aligned_cols=131 Identities=14% Similarity=0.152 Sum_probs=85.8
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCc--------hh
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRS--------EK 205 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~--------e~ 205 (286)
++.++||-||||..... ..|-... ....+++||+.+++++|+++|++++++||.+ +.
T Consensus 2 ~k~l~lDrDgtl~~~~~---------~~y~~~~------~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~ 66 (354)
T PRK05446 2 QKILFIDRDGTLIEEPP---------TDFQVDS------LDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQE 66 (354)
T ss_pred CcEEEEeCCCCccCCCC---------ccccccC------cccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHH
Confidence 57899999999996421 0010000 1247899999999999999999999999962 11
Q ss_pred ----hHHHHHHHHHhcCCCCcceEEEcC-----CCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCC-CCCcE
Q 023192 206 ----QRSITVDNLINAGVRYWDKLILRS-----SDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSP-MPSRS 275 (286)
Q Consensus 206 ----~r~~T~~~L~~~Gi~~~~~Lilr~-----~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~-~g~r~ 275 (286)
.+..+.+.|+..|+. ++.++... ....+||.+..-....+.+. ...+.+++|||+.+|+.+|+ +|.++
T Consensus 67 ~l~~~~~~i~~iL~~~gl~-fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~-v~~~~svmIGDs~sDi~aAk~aGi~~ 144 (354)
T PRK05446 67 DFDPPHNLMMQIFESQGIK-FDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGA-IDLANSYVIGDRETDVQLAENMGIKG 144 (354)
T ss_pred HHhhHHHHHHHHHHHcCCc-eeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcC-CCcccEEEEcCCHHHHHHHHHCCCeE
Confidence 134567788889986 55665553 22345776532111112111 11356999999999999984 78887
Q ss_pred EEecCCC
Q 023192 276 FKLPNPM 282 (286)
Q Consensus 276 fkLPNp~ 282 (286)
+.+ ||-
T Consensus 145 I~v-~~~ 150 (354)
T PRK05446 145 IRY-ARE 150 (354)
T ss_pred EEE-ECC
Confidence 655 553
No 78
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.85 E-value=2.9e-09 Score=90.38 Aligned_cols=83 Identities=13% Similarity=0.031 Sum_probs=57.0
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCC-CCCchHHHhHHHHHHhHhhcC-
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSD-DHGKLAIIYKSEKRNEMVQEG- 252 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~-~~~Kp~~~yKs~~r~~L~~~G- 252 (286)
..+++||+.++|+ +++++||.+ +......|+++|+..+...++..+. ...||++..-.. .+++.|
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~---~~~~~~~ 154 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNAS---HWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYEL---VFDTVGL 154 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCC---HHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHH---HHHHHCC
Confidence 4568899999988 378999988 5556678899999876443333333 456877742112 222223
Q ss_pred -CeEEEEEcCChhhhccCC
Q 023192 253 -YRILGNSGDQWSDLLGSP 270 (286)
Q Consensus 253 -y~i~~~IGDq~sDl~ga~ 270 (286)
...+++|||+..|+.||+
T Consensus 155 ~p~~~l~vgD~~~Di~~A~ 173 (175)
T TIGR01493 155 PPDRVLMVAAHQWDLIGAR 173 (175)
T ss_pred CHHHeEeEecChhhHHHHh
Confidence 246999999999999986
No 79
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.83 E-value=5.5e-09 Score=90.57 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=70.0
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHH
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVD 212 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~ 212 (286)
+.+.++||+||||+++.-|+...+.....|+. .. ...++.|+++|++++++|||+ ...+..
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~--------------~d--~~~i~~L~~~Gi~v~I~T~~~---~~~v~~ 80 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNV--------------RD--GYGIRCLLTSGIEVAIITGRK---SKLVED 80 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEec--------------cc--hHHHHHHHHCCCEEEEEeCCC---cHHHHH
Confidence 57899999999999864332111100011110 00 124566788999999999998 456778
Q ss_pred HHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcC--CeEEEEEcCChhhhccCC-CCCc
Q 023192 213 NLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEG--YRILGNSGDQWSDLLGSP-MPSR 274 (286)
Q Consensus 213 ~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G--y~i~~~IGDq~sDl~ga~-~g~r 274 (286)
.++++|+..+.. +...|+.. ++..+++.| .+.+++|||+.+|+..++ +|..
T Consensus 81 ~l~~lgl~~~f~------g~~~k~~~-----l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~ 134 (183)
T PRK09484 81 RMTTLGITHLYQ------GQSNKLIA-----FSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLS 134 (183)
T ss_pred HHHHcCCceeec------CCCcHHHH-----HHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 889999864321 12234322 233333334 347999999999999985 5655
No 80
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.80 E-value=4.8e-08 Score=82.68 Aligned_cols=93 Identities=13% Similarity=0.048 Sum_probs=60.7
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcce--EEEcCCC-----CCCc--hHHHhHHHHH
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK--LILRSSD-----DHGK--LAIIYKSEKR 245 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~--Lilr~~~-----~~~K--p~~~yKs~~r 245 (286)
..++.|++.++++.++++|++++++|+.. +..++..++.+|+..+.. +....++ ..++ +...-|....
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~---~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l 147 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSGGF---DFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVL 147 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHH
Confidence 45678999999999999999999999998 567788889889875321 1111110 0010 1112244444
Q ss_pred HhHh-hcC--CeEEEEEcCChhhhccCC
Q 023192 246 NEMV-QEG--YRILGNSGDQWSDLLGSP 270 (286)
Q Consensus 246 ~~L~-~~G--y~i~~~IGDq~sDl~ga~ 270 (286)
+++. +.| +..+++|||+.+|+..+.
T Consensus 148 ~~~~~~~~~~~~~~~~iGDs~~D~~~~~ 175 (177)
T TIGR01488 148 KELLEESKITLKKIIAVGDSVNDLPMLK 175 (177)
T ss_pred HHHHHHhCCCHHHEEEEeCCHHHHHHHh
Confidence 4432 222 456899999999997653
No 81
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.78 E-value=5.9e-08 Score=84.16 Aligned_cols=103 Identities=16% Similarity=-0.005 Sum_probs=66.8
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc--eEEEcCCC-CCCchH-----HHhHHH-HHH
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD--KLILRSSD-DHGKLA-----IIYKSE-KRN 246 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~--~Lilr~~~-~~~Kp~-----~~yKs~-~r~ 246 (286)
...+|++.++++.++++|++++++|+.++ .....+++..|++.+. ++....++ ..+++. ...|.. ++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~---~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~ 162 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLT---ILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAE 162 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcH---HHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHH
Confidence 46799999999999999999999999984 4566777888887542 12221110 111110 011322 223
Q ss_pred hHhhcCCe--EEEEEcCChhhhccCC-CCCcEEEecCC
Q 023192 247 EMVQEGYR--ILGNSGDQWSDLLGSP-MPSRSFKLPNP 281 (286)
Q Consensus 247 ~L~~~Gy~--i~~~IGDq~sDl~ga~-~g~r~fkLPNp 281 (286)
.+.+.|.. .+.++||+.+|+.... +|..++.-|+|
T Consensus 163 ~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~~~ 200 (202)
T TIGR01490 163 LLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPDK 200 (202)
T ss_pred HHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCCCC
Confidence 33444543 6888999999998875 56666666765
No 82
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.77 E-value=2.7e-08 Score=99.25 Aligned_cols=123 Identities=15% Similarity=0.057 Sum_probs=80.0
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchh------
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEK------ 205 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~------ 205 (286)
...+++.||+||||+.+.... .| +.++++|. .++|++.+.|+.|++.|++|+|+||.+..
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~---~~---~~~~~d~~--------~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~ 231 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGK---VF---PKGPDDWQ--------IIFPEIPEKLKELEADGFKICIFTNQGGIARGKIN 231 (526)
T ss_pred ccCcEEEEECCCCccccCCCc---cC---CCCHHHee--------ecccCHHHHHHHHHHCCCEEEEEECCcccccCccc
Confidence 446799999999999653210 01 12344432 36799999999999999999999998752
Q ss_pred ---hHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHh---hcCCeEEEEEcCChhhhccC
Q 023192 206 ---QRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMV---QEGYRILGNSGDQWSDLLGS 269 (286)
Q Consensus 206 ---~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~---~~Gy~i~~~IGDq~sDl~ga 269 (286)
....+.+.|+++|++ ++.++.......+||.+..-....+.+. .-..+.+++|||...|+.++
T Consensus 232 ~~~~~~ki~~iL~~lgip-fdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g 300 (526)
T TIGR01663 232 ADDFKAKIEAIVAKLGVP-FQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANG 300 (526)
T ss_pred HHHHHHHHHHHHHHcCCc-eEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHH
Confidence 234577889999997 6644433334456876632112222221 00123589999999998653
No 83
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.71 E-value=8.7e-08 Score=86.30 Aligned_cols=101 Identities=11% Similarity=0.189 Sum_probs=68.9
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITV 211 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~ 211 (286)
+..++++||+|||+.+. ..++||+.+++++|+++|++++|+||++.. +....
T Consensus 6 ~~~~~~~~D~dG~l~~~---------------------------~~~~pga~e~L~~L~~~G~~~~ivTN~~~~-~~~~~ 57 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDG---------------------------NHTYPGAVQNLNKIIAQGKPVYFVSNSPRN-IFSLH 57 (242)
T ss_pred hcCCEEEEecccccccC---------------------------CccCccHHHHHHHHHHCCCEEEEEeCCCCC-hHHHH
Confidence 44679999999999742 467999999999999999999999997643 33334
Q ss_pred HHHHhcCCCC-cceEEEcCCCCCCchHHHhHHHHHHhHhhcCC--eEEEEEcCChhhhc
Q 023192 212 DNLINAGVRY-WDKLILRSSDDHGKLAIIYKSEKRNEMVQEGY--RILGNSGDQWSDLL 267 (286)
Q Consensus 212 ~~L~~~Gi~~-~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy--~i~~~IGDq~sDl~ 267 (286)
+.|+++|++. +...++.+... . ...++..+.+.|. +.+.++||...|+.
T Consensus 58 ~~L~~~gl~~~~~~~Ii~s~~~----~---~~~l~~~~~~~~~~~~~~~~vGd~~~d~~ 109 (242)
T TIGR01459 58 KTLKSLGINADLPEMIISSGEI----A---VQMILESKKRFDIRNGIIYLLGHLENDII 109 (242)
T ss_pred HHHHHCCCCccccceEEccHHH----H---HHHHHhhhhhccCCCceEEEeCCcccchh
Confidence 7899999986 54444443210 0 1122222222222 35788999877664
No 84
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.70 E-value=1.2e-07 Score=83.72 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=62.6
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc--eEEEcC-CCCCCc--hHHHhHHHHHHhHh
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD--KLILRS-SDDHGK--LAIIYKSEKRNEMV 249 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~--~Lilr~-~~~~~K--p~~~yKs~~r~~L~ 249 (286)
..++.||+.++++.+++.| +++++||.. +..+...++++|++.+. .+...+ ....+. .....|....+.+.
T Consensus 66 ~i~l~pga~ell~~lk~~~-~~~IVS~~~---~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~ 141 (203)
T TIGR02137 66 TLKPLEGAVEFVDWLRERF-QVVILSDTF---YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFK 141 (203)
T ss_pred hCCCCccHHHHHHHHHhCC-eEEEEeCCh---HHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHH
Confidence 3578999999999999975 999999998 56778889999997542 233322 110111 01123555566665
Q ss_pred hcCCeEEEEEcCChhhhccCC
Q 023192 250 QEGYRILGNSGDQWSDLLGSP 270 (286)
Q Consensus 250 ~~Gy~i~~~IGDq~sDl~ga~ 270 (286)
+.|. .+++|||..+|+....
T Consensus 142 ~~~~-~~v~vGDs~nDl~ml~ 161 (203)
T TIGR02137 142 SLYY-RVIAAGDSYNDTTMLS 161 (203)
T ss_pred hhCC-CEEEEeCCHHHHHHHH
Confidence 5554 5778999999997764
No 85
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.69 E-value=1.3e-07 Score=83.62 Aligned_cols=98 Identities=9% Similarity=-0.019 Sum_probs=61.9
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc--c-eEEEcCCC-CCCchHHH----------h
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW--D-KLILRSSD-DHGKLAII----------Y 240 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~--~-~Lilr~~~-~~~Kp~~~----------y 240 (286)
..++.||+.++++.|+++|++++++|+.. +.....+|+.++.... . .+...+.. ...+|.+. -
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~---~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~ 144 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGM---DFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCC 144 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCc---HHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCC
Confidence 57899999999999999999999999997 4556666776643221 1 12222211 11122211 1
Q ss_pred HHHHHHhHhhcCCeEEEEEcCChhhhccCCCCCcEE
Q 023192 241 KSEKRNEMVQEGYRILGNSGDQWSDLLGSPMPSRSF 276 (286)
Q Consensus 241 Ks~~r~~L~~~Gy~i~~~IGDq~sDl~ga~~g~r~f 276 (286)
|....+++... .+.+++|||..+|+.++..+...|
T Consensus 145 K~~~l~~~~~~-~~~~i~iGDg~~D~~~a~~Ad~~~ 179 (214)
T TIGR03333 145 KPSLIRKLSEP-NDYHIVIGDSVTDVEAAKQSDLCF 179 (214)
T ss_pred HHHHHHHHhhc-CCcEEEEeCCHHHHHHHHhCCeeE
Confidence 44444444433 345689999999999886444444
No 86
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.66 E-value=3.3e-07 Score=86.50 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=62.2
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc--eEEE-------c--CCCCCCchHHHhHHH
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD--KLIL-------R--SSDDHGKLAIIYKSE 243 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~--~Lil-------r--~~~~~~Kp~~~yKs~ 243 (286)
..++.||+.++++.|++.|++++++||... ..+...++++|+.... .+-. + +....+++ |..
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~---~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~----K~~ 251 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFT---YFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQY----KAD 251 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcc---hhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCccc----HHH
Confidence 467899999999999999999999999984 3355666677886321 1100 0 01111222 222
Q ss_pred HHHhH-hhcC--CeEEEEEcCChhhhccCCCCCcEEEecCC
Q 023192 244 KRNEM-VQEG--YRILGNSGDQWSDLLGSPMPSRSFKLPNP 281 (286)
Q Consensus 244 ~r~~L-~~~G--y~i~~~IGDq~sDl~ga~~g~r~fkLPNp 281 (286)
..+++ ++.| .+.+++|||..+|+..+......+.+ |+
T Consensus 252 ~L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nA 291 (322)
T PRK11133 252 TLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-HA 291 (322)
T ss_pred HHHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe-CC
Confidence 22222 2334 34699999999999987543345555 54
No 87
>PLN02645 phosphoglycolate phosphatase
Probab=98.64 E-value=7.6e-08 Score=90.16 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=55.4
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHH
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVD 212 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~ 212 (286)
..++++||+||||++. ..++||+.+++++|+++|++++|+|||+...+....+
T Consensus 27 ~~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~ 79 (311)
T PLN02645 27 SVETFIFDCDGVIWKG---------------------------DKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGK 79 (311)
T ss_pred hCCEEEEeCcCCeEeC---------------------------CccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence 4689999999999842 3578999999999999999999999999888888888
Q ss_pred HHHhcCCCCc
Q 023192 213 NLINAGVRYW 222 (286)
Q Consensus 213 ~L~~~Gi~~~ 222 (286)
.|+++|++..
T Consensus 80 ~l~~lGi~~~ 89 (311)
T PLN02645 80 KFESLGLNVT 89 (311)
T ss_pred HHHHCCCCCC
Confidence 9999999753
No 88
>PRK08238 hypothetical protein; Validated
Probab=98.64 E-value=2.5e-07 Score=91.66 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=62.1
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHH-HHHhHhhcCCe
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSE-KRNEMVQEGYR 254 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~-~r~~L~~~Gy~ 254 (286)
.+..|++.+++++++++|++++++|+++ +..++..+++.|+ ++.++..+...+.|++. |.. +++.+.+ +
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~---~~~a~~i~~~lGl--Fd~Vigsd~~~~~kg~~--K~~~l~~~l~~---~ 140 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASD---ERLAQAVAAHLGL--FDGVFASDGTTNLKGAA--KAAALVEAFGE---R 140 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHHcCC--CCEEEeCCCccccCCch--HHHHHHHHhCc---c
Confidence 4567999999999999999999999998 4556677788887 56666555444444332 222 2233332 2
Q ss_pred EEEEEcCChhhhccCCCCCcEE
Q 023192 255 ILGNSGDQWSDLLGSPMPSRSF 276 (286)
Q Consensus 255 i~~~IGDq~sDl~ga~~g~r~f 276 (286)
-+.++||+.+|+...+...+.+
T Consensus 141 ~~~yvGDS~~Dlp~~~~A~~av 162 (479)
T PRK08238 141 GFDYAGNSAADLPVWAAARRAI 162 (479)
T ss_pred CeeEecCCHHHHHHHHhCCCeE
Confidence 2578899999998865333333
No 89
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.61 E-value=6.8e-08 Score=84.04 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=59.8
Q ss_pred cCCcccHHHHHHHHHHHHCCCeEEEEcCCchh----hHHHHHHHHHhc--CCCCcceEEEcCCCCCCchHHHhHHHHHHh
Q 023192 174 AMSPAIEASLKLYEEVLGLGFKIFLLTGRSEK----QRSITVDNLINA--GVRYWDKLILRSSDDHGKLAIIYKSEKRNE 247 (286)
Q Consensus 174 ~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~----~r~~T~~~L~~~--Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~ 247 (286)
...+|+||+.+.+++|.+.|+.+++||+|+.. ....|.+||+++ +++ ++.+++.+. | . .
T Consensus 70 ~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~-~~~~~~~~~----K------~----~ 134 (191)
T PF06941_consen 70 SNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIP-YDNLIFTGD----K------T----L 134 (191)
T ss_dssp TT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHH-HCCEEEESS----G------G----G
T ss_pred cCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCc-hheEEEecC----C------C----e
Confidence 35799999999999999999999999999865 578999999999 444 667777532 2 1 1
Q ss_pred HhhcCCeEEEEEcCChhhhccC-CCCCcEEEecCC
Q 023192 248 MVQEGYRILGNSGDQWSDLLGS-PMPSRSFKLPNP 281 (286)
Q Consensus 248 L~~~Gy~i~~~IGDq~sDl~ga-~~g~r~fkLPNp 281 (286)
+ +.. +.|+|++.-+... ..|..++.+..|
T Consensus 135 v---~~D--vlIDD~~~n~~~~~~~g~~~iLfd~p 164 (191)
T PF06941_consen 135 V---GGD--VLIDDRPHNLEQFANAGIPVILFDQP 164 (191)
T ss_dssp C-----S--EEEESSSHHHSS-SSESSEEEEE--G
T ss_pred E---ecc--EEecCChHHHHhccCCCceEEEEcCC
Confidence 1 122 4689998766654 457777777665
No 90
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.55 E-value=2.9e-07 Score=85.33 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=55.5
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCccc-HHHHHHHHHHHHCCCeEEEEcCCchhhHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAI-EASLKLYEEVLGLGFKIFLLTGRSEKQRSIT 210 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~-pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T 210 (286)
.-++.|+||+||||++... ..... |++.+++++|+++|++++++|++. |...
T Consensus 124 ~~~kvIvFDLDgTLi~~~~------------------------~v~irdPgV~EaL~~LkekGikLaIaTS~~---Re~v 176 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEE------------------------PVRIRDPRIYDSLTELKKRGCILVLWSYGD---RDHV 176 (301)
T ss_pred ccceEEEEecCCCCcCCCC------------------------ccccCCHHHHHHHHHHHHCCCEEEEEECCC---HHHH
Confidence 3467999999999996411 12233 899999999999999999999998 5666
Q ss_pred HHHHHhcCCCCcceEEEcC
Q 023192 211 VDNLINAGVRYWDKLILRS 229 (286)
Q Consensus 211 ~~~L~~~Gi~~~~~Lilr~ 229 (286)
.+.|++.|+..+...+..+
T Consensus 177 ~~~L~~lGLd~YFdvIIs~ 195 (301)
T TIGR01684 177 VESMRKVKLDRYFDIIISG 195 (301)
T ss_pred HHHHHHcCCCcccCEEEEC
Confidence 7899999999865444433
No 91
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=98.55 E-value=8.8e-08 Score=88.11 Aligned_cols=99 Identities=21% Similarity=0.368 Sum_probs=71.4
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITV 211 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~ 211 (286)
+..++++||+||||.. +..++||+.++++.|+++|.+++|+||++...++...
T Consensus 6 ~~y~~~l~DlDGvl~~---------------------------G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~ 58 (269)
T COG0647 6 DKYDGFLFDLDGVLYR---------------------------GNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVA 58 (269)
T ss_pred hhcCEEEEcCcCceEe---------------------------CCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 4567999999999973 4689999999999999999999999999999999888
Q ss_pred HHHHhc-CCCC-cceEEEcCCC---------CCCchHHHhHHHHHHhHhhcCCeEEE
Q 023192 212 DNLINA-GVRY-WDKLILRSSD---------DHGKLAIIYKSEKRNEMVQEGYRILG 257 (286)
Q Consensus 212 ~~L~~~-Gi~~-~~~Lilr~~~---------~~~Kp~~~yKs~~r~~L~~~Gy~i~~ 257 (286)
+.|+.+ |.+. ++.++..... ...|--.....+.+.+++..|+.++.
T Consensus 59 ~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~~ 115 (269)
T COG0647 59 ARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIGEEGLKEELEGAGFELVD 115 (269)
T ss_pred HHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEECCcchHHHHHhCCcEEec
Confidence 899994 5533 4554433221 00111112245667777777765543
No 92
>PRK11590 hypothetical protein; Provisional
Probab=98.54 E-value=6.5e-07 Score=79.05 Aligned_cols=103 Identities=15% Similarity=0.051 Sum_probs=60.2
Q ss_pred CcccHHHHHHH-HHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCC--CCCCc--hHHHhHHHHHHhHhh
Q 023192 176 SPAIEASLKLY-EEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSS--DDHGK--LAIIYKSEKRNEMVQ 250 (286)
Q Consensus 176 ~~~~pgv~ell-~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~--~~~~K--p~~~yKs~~r~~L~~ 250 (286)
..++||+.+++ +.+++.|++++++||++ +..+...+..+|+..-++++...- ...++ ....+.+++...+++
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~---~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~ 170 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSP---QPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLER 170 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCc---HHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHH
Confidence 46799999999 57888999999999999 556777888878521223322210 01111 011122222333322
Q ss_pred ---cCCeEEEEEcCChhhhccCC-CCCcEEEecCC
Q 023192 251 ---EGYRILGNSGDQWSDLLGSP-MPSRSFKLPNP 281 (286)
Q Consensus 251 ---~Gy~i~~~IGDq~sDl~ga~-~g~r~fkLPNp 281 (286)
.....+.+.||+.+|+.--. ++.....=|+|
T Consensus 171 ~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~~ 205 (211)
T PRK11590 171 KIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPRG 205 (211)
T ss_pred HhCCCcceEEEecCCcccHHHHHhCCCCEEECccH
Confidence 23556778999999996543 34443333554
No 93
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.53 E-value=2.3e-07 Score=84.59 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=53.7
Q ss_pred cEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHH
Q 023192 135 DAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNL 214 (286)
Q Consensus 135 ~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L 214 (286)
+.++||+||||++... ....++|++.+.+++|+++|++++|+|||+...+....+.|
T Consensus 2 k~i~~D~DGtl~~~~~-----------------------~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 2 KGVLLDISGVLYISDA-----------------------KSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CEEEEeCCCeEEeCCC-----------------------cccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 5899999999984310 01238899999999999999999999999988888889999
Q ss_pred HhcCCCC
Q 023192 215 INAGVRY 221 (286)
Q Consensus 215 ~~~Gi~~ 221 (286)
+++|++.
T Consensus 59 ~~~g~~~ 65 (257)
T TIGR01458 59 QRLGFDI 65 (257)
T ss_pred HHcCCCC
Confidence 9999973
No 94
>PRK10444 UMP phosphatase; Provisional
Probab=98.53 E-value=3.3e-07 Score=83.39 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=53.9
Q ss_pred cEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHH
Q 023192 135 DAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNL 214 (286)
Q Consensus 135 ~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L 214 (286)
+.++||+||||++. ..++|++.++++.|+++|.+++|+|||+...+....+.|
T Consensus 2 ~~v~~DlDGtL~~~---------------------------~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 2 KNVICDIDGVLMHD---------------------------NVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred cEEEEeCCCceEeC---------------------------CeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 58999999999842 367999999999999999999999999988888899999
Q ss_pred HhcCCCC
Q 023192 215 INAGVRY 221 (286)
Q Consensus 215 ~~~Gi~~ 221 (286)
++.|++.
T Consensus 55 ~~~G~~~ 61 (248)
T PRK10444 55 ATAGVDV 61 (248)
T ss_pred HHcCCCC
Confidence 9999963
No 95
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=98.53 E-value=1.2e-06 Score=76.04 Aligned_cols=126 Identities=16% Similarity=0.155 Sum_probs=84.0
Q ss_pred ccEEEEecCCCccCCch-hhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCch--------
Q 023192 134 KDAWIFDIDETLLSNLP-YYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSE-------- 204 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~-~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e-------- 204 (286)
.+++++|-||||..-.+ |. .++++ -...|++.+.+..|++.|++++++||-+-
T Consensus 5 ~k~lflDRDGtin~d~~~yv------------~~~~~------~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~ 66 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYV------------DSLDD------FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTE 66 (181)
T ss_pred CcEEEEcCCCceecCCCccc------------CcHHH------hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccH
Confidence 67999999999985433 22 12333 25678999999999999999999999542
Q ss_pred h----hHHHHHHHHHhcCCCCcceEEEcCCCCC-----CchHHHhHHHHHHhHhhcC--CeEEEEEcCChhhhccC-CCC
Q 023192 205 K----QRSITVDNLINAGVRYWDKLILRSSDDH-----GKLAIIYKSEKRNEMVQEG--YRILGNSGDQWSDLLGS-PMP 272 (286)
Q Consensus 205 ~----~r~~T~~~L~~~Gi~~~~~Lilr~~~~~-----~Kp~~~yKs~~r~~L~~~G--y~i~~~IGDq~sDl~ga-~~g 272 (286)
. .-+...+.|++.|.. .+.++..+.... +||.+-. +...+++.+ .....+|||..+|+++| ++|
T Consensus 67 ~~f~~~~~~m~~~l~~~gv~-id~i~~Cph~p~~~c~cRKP~~gm---~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~g 142 (181)
T COG0241 67 ADFDKLHNKMLKILASQGVK-IDGILYCPHHPEDNCDCRKPKPGM---LLSALKEYNIDLSRSYVVGDRLTDLQAAENAG 142 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCc-cceEEECCCCCCCCCcccCCChHH---HHHHHHHhCCCccceEEecCcHHHHHHHHHCC
Confidence 1 123345667778875 677777765432 5665421 122222222 24678999999999988 467
Q ss_pred CcEEEecCC
Q 023192 273 SRSFKLPNP 281 (286)
Q Consensus 273 ~r~fkLPNp 281 (286)
.+.+.+-+.
T Consensus 143 i~~~~~~~~ 151 (181)
T COG0241 143 IKGVLVLTG 151 (181)
T ss_pred CCceEEEcC
Confidence 776666443
No 96
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.50 E-value=5.2e-07 Score=84.81 Aligned_cols=115 Identities=11% Similarity=0.000 Sum_probs=75.6
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
++++|+|+|+||.... .|... .+. -.-..+++++.++++.|+++|++++++|+++ +..+.+.
T Consensus 3 ~k~~v~DlDnTlw~gv-------~~e~g--~~~------i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~---~~~a~~~ 64 (320)
T TIGR01686 3 LKVLVLDLDNTLWGGV-------LGEDG--IDN------LNLSPLHKTLQEKIKTLKKQGFLLALASKND---EDDAKKV 64 (320)
T ss_pred eEEEEEcCCCCCCCCE-------EccCC--ccc------cccCccHHHHHHHHHHHHhCCCEEEEEcCCC---HHHHHHH
Confidence 6799999999998431 01000 000 0123568999999999999999999999998 4567778
Q ss_pred HHh----cCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCCC
Q 023192 214 LIN----AGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSPM 271 (286)
Q Consensus 214 L~~----~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~~ 271 (286)
|++ .|+..++..+... .++||... + ...+++. .+.+.+++|||++.|+.+++.
T Consensus 65 l~~~~~~~~~~~~f~~~~~~--~~pk~~~i-~-~~~~~l~-i~~~~~vfidD~~~d~~~~~~ 121 (320)
T TIGR01686 65 FERRKDFILQAEDFDARSIN--WGPKSESL-R-KIAKKLN-LGTDSFLFIDDNPAERANVKI 121 (320)
T ss_pred HHhCccccCcHHHeeEEEEe--cCchHHHH-H-HHHHHhC-CCcCcEEEECCCHHHHHHHHH
Confidence 888 7776554443222 22344332 1 2222221 245679999999999999753
No 97
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.50 E-value=4.1e-07 Score=83.73 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=53.5
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
.++|+|||||||++. ..++|++.+++++|+++|++++++|||+...+....+.
T Consensus 2 ~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~ 54 (279)
T TIGR01452 2 AQGFIFDCDGVLWLG---------------------------ERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALK 54 (279)
T ss_pred ccEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHH
Confidence 468999999999742 45788999999999999999999999998778888889
Q ss_pred HHhcCCCC
Q 023192 214 LINAGVRY 221 (286)
Q Consensus 214 L~~~Gi~~ 221 (286)
|+++|++.
T Consensus 55 l~~~G~~~ 62 (279)
T TIGR01452 55 FARLGFNG 62 (279)
T ss_pred HHHcCCCC
Confidence 99999964
No 98
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.49 E-value=1.7e-06 Score=74.45 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=76.0
Q ss_pred ccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCe--EEEEcCCchhh
Q 023192 129 LRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFK--IFLLTGRSEKQ 206 (286)
Q Consensus 129 ~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~--Ii~vTgR~e~~ 206 (286)
+...|.+++|||.|.||..- + .....|...+.++++++.+.. |+++||.....
T Consensus 36 Lk~~Gik~li~DkDNTL~~~-------------~------------~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~ 90 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPP-------------Y------------EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSS 90 (168)
T ss_pred hhhcCceEEEEcCCCCCCCC-------------C------------cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 45678999999999999731 1 355667888889999988764 99999984211
Q ss_pred ----HHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhc----CCeEEEEEcCCh-hhhccCC-CCCcEE
Q 023192 207 ----RSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQE----GYRILGNSGDQW-SDLLGSP-MPSRSF 276 (286)
Q Consensus 207 ----r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~----Gy~i~~~IGDq~-sDl~ga~-~g~r~f 276 (286)
.......=+.+|++. ++.. ..||.. ...+.+.+... ..+.+++||||. +|+.+|+ .|..++
T Consensus 91 ~d~~~~~a~~~~~~lgIpv-----l~h~--~kKP~~--~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~ti 161 (168)
T PF09419_consen 91 DDPDGERAEALEKALGIPV-----LRHR--AKKPGC--FREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTI 161 (168)
T ss_pred cCccHHHHHHHHHhhCCcE-----EEeC--CCCCcc--HHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEE
Confidence 122222335568872 2211 234421 11233333222 255799999999 9999996 677877
Q ss_pred EecCC
Q 023192 277 KLPNP 281 (286)
Q Consensus 277 kLPNp 281 (286)
.+-++
T Consensus 162 lv~~g 166 (168)
T PF09419_consen 162 LVTDG 166 (168)
T ss_pred EEecC
Confidence 76554
No 99
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.43 E-value=3.1e-07 Score=77.49 Aligned_cols=107 Identities=26% Similarity=0.361 Sum_probs=69.9
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
.+-++||+||||.|-.-||..++-.-+.||.. + |. -++.|.+.|++++++|||.. ...++-
T Consensus 8 IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~-------D-------G~--Gik~l~~~Gi~vAIITGr~s---~ive~R 68 (170)
T COG1778 8 IKLLILDVDGVLTDGKLYYDENGEEIKAFNVR-------D-------GH--GIKLLLKSGIKVAIITGRDS---PIVEKR 68 (170)
T ss_pred ceEEEEeccceeecCeEEEcCCCceeeeeecc-------C-------cH--HHHHHHHcCCeEEEEeCCCC---HHHHHH
Confidence 56799999999999988876554333334321 1 11 14567788999999999984 566777
Q ss_pred HHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhcc
Q 023192 214 LINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 214 L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g 268 (286)
.+++|++ .++....+ |- ..|+ ++++++. -++..+++|||.++|+-.
T Consensus 69 a~~LGI~---~~~qG~~d---K~-~a~~-~L~~~~~-l~~e~~ayiGDD~~Dlpv 114 (170)
T COG1778 69 AKDLGIK---HLYQGISD---KL-AAFE-ELLKKLN-LDPEEVAYVGDDLVDLPV 114 (170)
T ss_pred HHHcCCc---eeeechHh---HH-HHHH-HHHHHhC-CCHHHhhhhcCccccHHH
Confidence 8889996 34443221 21 1122 3333332 346789999999999954
No 100
>PLN02811 hydrolase
Probab=98.43 E-value=5.7e-07 Score=79.63 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=69.2
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc-eEEEcC--CCCCCchHHHhHHHHHHhHhh-
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD-KLILRS--SDDHGKLAIIYKSEKRNEMVQ- 250 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~-~Lilr~--~~~~~Kp~~~yKs~~r~~L~~- 250 (286)
..+++||+.++++.|+++|++++++||.... ......++..|+..|. .++... ....+||++..-....+.+..
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~--~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~ 153 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKR--HFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDG 153 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchh--hHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCC
Confidence 4678999999999999999999999998742 2233333334555444 444444 233457766321122222210
Q ss_pred -cCCeEEEEEcCChhhhccCC-CCCcEEEecCC
Q 023192 251 -EGYRILGNSGDQWSDLLGSP-MPSRSFKLPNP 281 (286)
Q Consensus 251 -~Gy~i~~~IGDq~sDl~ga~-~g~r~fkLPNp 281 (286)
.....+++|||+..|+.+|+ +|.+++.++++
T Consensus 154 ~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~ 186 (220)
T PLN02811 154 PVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDP 186 (220)
T ss_pred CCCccceEEEeccHhhHHHHHHCCCeEEEEeCC
Confidence 11357999999999999994 79999988654
No 101
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.40 E-value=2.7e-06 Score=75.72 Aligned_cols=90 Identities=16% Similarity=0.085 Sum_probs=60.7
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc-eEEEcCCC-CCCc---h--HHHhHHHHHHhH
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD-KLILRSSD-DHGK---L--AIIYKSEKRNEM 248 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~-~Lilr~~~-~~~K---p--~~~yKs~~r~~L 248 (286)
.+..|++.++++.++++|++++++||-.. ..+....+.+|+..+- ..+...++ ..++ + ....|.....++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~---~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~ 152 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFT---FLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALREL 152 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChH---HHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHH
Confidence 78899999999999999999999999985 4566666778997542 22222221 1111 0 112354444444
Q ss_pred h-hcCCe--EEEEEcCChhhhcc
Q 023192 249 V-QEGYR--ILGNSGDQWSDLLG 268 (286)
Q Consensus 249 ~-~~Gy~--i~~~IGDq~sDl~g 268 (286)
. +.|.+ .+..+||+.+|+.-
T Consensus 153 ~~~~g~~~~~~~a~gDs~nDlpm 175 (212)
T COG0560 153 AAELGIPLEETVAYGDSANDLPM 175 (212)
T ss_pred HHHcCCCHHHeEEEcCchhhHHH
Confidence 3 44665 78999999999954
No 102
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.39 E-value=1.5e-06 Score=80.81 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=55.7
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcc-cHHHHHHHHHHHHCCCeEEEEcCCchhhHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPA-IEASLKLYEEVLGLGFKIFLLTGRSEKQRSIT 210 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~-~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T 210 (286)
.-++.++||+||||+... ..... -|++.++|++|+++|++++++|+++ |...
T Consensus 126 ~~~~~i~~D~D~TL~~~~------------------------~~v~irdp~V~EtL~eLkekGikLaIvTNg~---Re~v 178 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDE------------------------EPVRIRDPFVYDSLDELKERGCVLVLWSYGN---REHV 178 (303)
T ss_pred eeccEEEEecCCCccCCC------------------------CccccCChhHHHHHHHHHHCCCEEEEEcCCC---hHHH
Confidence 346789999999999541 11223 3899999999999999999999887 5566
Q ss_pred HHHHHhcCCCCcceEEEcCC
Q 023192 211 VDNLINAGVRYWDKLILRSS 230 (286)
Q Consensus 211 ~~~L~~~Gi~~~~~Lilr~~ 230 (286)
...|+++|+..+...+...+
T Consensus 179 ~~~Le~lgL~~yFDvII~~g 198 (303)
T PHA03398 179 VHSLKETKLEGYFDIIICGG 198 (303)
T ss_pred HHHHHHcCCCccccEEEECC
Confidence 88999999988755444443
No 103
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.35 E-value=3.6e-06 Score=73.52 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=68.7
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCC---cc-eEEEcCCCC-------CCc
Q 023192 167 FDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRY---WD-KLILRSSDD-------HGK 235 (286)
Q Consensus 167 ~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~---~~-~Lilr~~~~-------~~K 235 (286)
..+++.......-||+.+|.+.|+++|.+++++||-- |....-.-..+|++. |. .+....++. ...
T Consensus 78 v~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF---~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~pt 154 (227)
T KOG1615|consen 78 VEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGF---RQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPT 154 (227)
T ss_pred HHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCCh---HHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCcc
Confidence 3444545567788999999999999999999999987 445555556678873 21 222222211 111
Q ss_pred hHHHhHHHHHHhHhhcC--CeEEEEEcCChhhhccCCCCCcEE
Q 023192 236 LAIIYKSEKRNEMVQEG--YRILGNSGDQWSDLLGSPMPSRSF 276 (286)
Q Consensus 236 p~~~yKs~~r~~L~~~G--y~i~~~IGDq~sDl~ga~~g~r~f 276 (286)
.+...|++....+.+ + |..+.+|||-.+|+.+-+-|.-.+
T Consensus 155 sdsggKa~~i~~lrk-~~~~~~~~mvGDGatDlea~~pa~afi 196 (227)
T KOG1615|consen 155 SDSGGKAEVIALLRK-NYNYKTIVMVGDGATDLEAMPPADAFI 196 (227)
T ss_pred ccCCccHHHHHHHHh-CCChheeEEecCCccccccCCchhhhh
Confidence 122345666665554 4 557899999999999865444333
No 104
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.29 E-value=3.6e-06 Score=71.85 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCC------chHH-H--hHHHHHHhH--
Q 023192 180 EASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHG------KLAI-I--YKSEKRNEM-- 248 (286)
Q Consensus 180 pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~------Kp~~-~--yKs~~r~~L-- 248 (286)
|++.++++.+++.|++++++|+.+ +..++..++..|++... ++.....+.+ +... . .|....+++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~---~~~i~~~~~~~~i~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~ 167 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSP---DEIIEPIAERLGIDDDN-VIGNELFDNGGGIFTGRITGSNCGGKAEALKELYI 167 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEE---HHHHHHHHHHTTSSEGG-EEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCCceE-EEEEeeeecccceeeeeECCCCCCcHHHHHHHHHH
Confidence 344499999999999999999998 56677778889998532 1111111000 0000 0 244445555
Q ss_pred -h--hcCCeEEEEEcCChhhhcc
Q 023192 249 -V--QEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 249 -~--~~Gy~i~~~IGDq~sDl~g 268 (286)
. ..+...++++||+.+|+..
T Consensus 168 ~~~~~~~~~~~~~iGDs~~D~~~ 190 (192)
T PF12710_consen 168 RDEEDIDPDRVIAIGDSINDLPM 190 (192)
T ss_dssp HHHHTHTCCEEEEEESSGGGHHH
T ss_pred HhhcCCCCCeEEEEECCHHHHHH
Confidence 1 2457789999999999853
No 105
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.29 E-value=1.5e-06 Score=78.87 Aligned_cols=60 Identities=13% Similarity=0.237 Sum_probs=51.3
Q ss_pred cEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHH
Q 023192 135 DAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNL 214 (286)
Q Consensus 135 ~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L 214 (286)
+.++||+||||++. ..++|++.+++++|+++|++++|+||++...+....+.|
T Consensus 2 ~~~~~D~DGtl~~~---------------------------~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l 54 (249)
T TIGR01457 2 KGYLIDLDGTMYKG---------------------------KERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML 54 (249)
T ss_pred CEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 57999999999842 346789999999999999999999996655577888899
Q ss_pred HhcCCCC
Q 023192 215 INAGVRY 221 (286)
Q Consensus 215 ~~~Gi~~ 221 (286)
++.|++.
T Consensus 55 ~~~g~~~ 61 (249)
T TIGR01457 55 ASFDIPA 61 (249)
T ss_pred HHcCCCC
Confidence 9999975
No 106
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.27 E-value=2.7e-06 Score=75.20 Aligned_cols=59 Identities=19% Similarity=0.136 Sum_probs=45.0
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
.+.+++|+||||++.. ...-|.+.+.+++|+++|++++++|||+. ......
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~~~iaTGR~~---~~~~~~ 53 (230)
T PRK01158 3 IKAIAIDIDGTITDKD--------------------------RRLSLKAVEAIRKAEKLGIPVILATGNVL---CFARAA 53 (230)
T ss_pred eeEEEEecCCCcCCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCch---HHHHHH
Confidence 4689999999999541 12345788889999999999999999994 334455
Q ss_pred HHhcCCCC
Q 023192 214 LINAGVRY 221 (286)
Q Consensus 214 L~~~Gi~~ 221 (286)
++..|++.
T Consensus 54 ~~~l~~~~ 61 (230)
T PRK01158 54 AKLIGTSG 61 (230)
T ss_pred HHHhCCCC
Confidence 66777764
No 107
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.26 E-value=3.1e-06 Score=77.16 Aligned_cols=60 Identities=20% Similarity=0.120 Sum_probs=47.5
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
++.+++||||||+++ ....-+...+.+++|+++|++++++|||+ ...+...
T Consensus 2 ~kli~~DlDGTLl~~--------------------------~~~i~~~~~~ai~~l~~~G~~~~iaTGR~---~~~~~~~ 52 (272)
T PRK15126 2 ARLAAFDMDGTLLMP--------------------------DHHLGEKTLSTLARLRERDITLTFATGRH---VLEMQHI 52 (272)
T ss_pred ccEEEEeCCCcCcCC--------------------------CCcCCHHHHHHHHHHHHCCCEEEEECCCC---HHHHHHH
Confidence 368999999999954 12345678899999999999999999999 4456677
Q ss_pred HHhcCCCCc
Q 023192 214 LINAGVRYW 222 (286)
Q Consensus 214 L~~~Gi~~~ 222 (286)
+++.|+..+
T Consensus 53 ~~~l~~~~~ 61 (272)
T PRK15126 53 LGALSLDAY 61 (272)
T ss_pred HHHcCCCCc
Confidence 788888643
No 108
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.25 E-value=3e-06 Score=76.68 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=46.3
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
++.+++||||||+++ .....|...+.+++++++|++++++|||+. ..+...
T Consensus 3 ~kli~~DlDGTLl~~--------------------------~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~---~~~~~~ 53 (272)
T PRK10530 3 YRVIALDLDGTLLTP--------------------------KKTILPESLEALARAREAGYKVIIVTGRHH---VAIHPF 53 (272)
T ss_pred ccEEEEeCCCceECC--------------------------CCccCHHHHHHHHHHHHCCCEEEEEcCCCh---HHHHHH
Confidence 468999999999954 123455678999999999999999999983 445667
Q ss_pred HHhcCCCC
Q 023192 214 LINAGVRY 221 (286)
Q Consensus 214 L~~~Gi~~ 221 (286)
++++|+..
T Consensus 54 ~~~l~~~~ 61 (272)
T PRK10530 54 YQALALDT 61 (272)
T ss_pred HHhcCCCC
Confidence 77778764
No 109
>PRK10976 putative hydrolase; Provisional
Probab=98.23 E-value=3.4e-06 Score=76.45 Aligned_cols=59 Identities=19% Similarity=0.093 Sum_probs=46.0
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
++.+++||||||+++. ...-+...+.+++++++|++++++|||+. ......
T Consensus 2 ikli~~DlDGTLl~~~--------------------------~~is~~~~~ai~~l~~~G~~~~iaTGR~~---~~~~~~ 52 (266)
T PRK10976 2 YQVVASDLDGTLLSPD--------------------------HTLSPYAKETLKLLTARGIHFVFATGRHH---VDVGQI 52 (266)
T ss_pred ceEEEEeCCCCCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCCh---HHHHHH
Confidence 3689999999999641 23445688999999999999999999984 445566
Q ss_pred HHhcCCCC
Q 023192 214 LINAGVRY 221 (286)
Q Consensus 214 L~~~Gi~~ 221 (286)
++..|+..
T Consensus 53 ~~~l~~~~ 60 (266)
T PRK10976 53 RDNLEIKS 60 (266)
T ss_pred HHhcCCCC
Confidence 77778764
No 110
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.21 E-value=4.1e-06 Score=76.68 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=48.1
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
.+.+++||||||++. .....+++.+.+++|+++|++++++|||+ .......
T Consensus 4 ~kli~~DlDGTLl~~--------------------------~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~---~~~~~~~ 54 (273)
T PRK00192 4 KLLVFTDLDGTLLDH--------------------------HTYSYEPAKPALKALKEKGIPVIPCTSKT---AAEVEVL 54 (273)
T ss_pred ceEEEEcCcccCcCC--------------------------CCcCcHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHH
Confidence 468999999999963 12345678999999999999999999998 4556677
Q ss_pred HHhcCCCCc
Q 023192 214 LINAGVRYW 222 (286)
Q Consensus 214 L~~~Gi~~~ 222 (286)
++++|+..+
T Consensus 55 ~~~l~l~~~ 63 (273)
T PRK00192 55 RKELGLEDP 63 (273)
T ss_pred HHHcCCCCC
Confidence 788888643
No 111
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.18 E-value=5.3e-06 Score=73.04 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=43.5
Q ss_pred cEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHH
Q 023192 135 DAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNL 214 (286)
Q Consensus 135 ~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L 214 (286)
+.|++|+||||+++ ....-|...+.+++|+++|++++++|||+.. ...+.+
T Consensus 2 k~v~~DlDGTLl~~--------------------------~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~---~~~~~~ 52 (215)
T TIGR01487 2 KLVAIDIDGTLTEP--------------------------NRMISERAIEAIRKAEKKGIPVSLVTGNTVP---FARALA 52 (215)
T ss_pred cEEEEecCCCcCCC--------------------------CcccCHHHHHHHHHHHHCCCEEEEEcCCcch---hHHHHH
Confidence 57999999999953 1234567889999999999999999999843 344445
Q ss_pred HhcCCC
Q 023192 215 INAGVR 220 (286)
Q Consensus 215 ~~~Gi~ 220 (286)
+.+++.
T Consensus 53 ~~l~~~ 58 (215)
T TIGR01487 53 VLIGTS 58 (215)
T ss_pred HHhCCC
Confidence 566665
No 112
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.17 E-value=5.3e-06 Score=75.26 Aligned_cols=58 Identities=21% Similarity=0.130 Sum_probs=45.5
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
.+.+++|+||||++.. ...-+...+.+++|+++|++++++|||+. ..+...
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~~---~~~~~~ 53 (270)
T PRK10513 3 IKLIAIDMDGTLLLPD--------------------------HTISPAVKQAIAAARAKGVNVVLTTGRPY---AGVHRY 53 (270)
T ss_pred eEEEEEecCCcCcCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEecCCCh---HHHHHH
Confidence 4689999999999541 23445678999999999999999999994 445666
Q ss_pred HHhcCCC
Q 023192 214 LINAGVR 220 (286)
Q Consensus 214 L~~~Gi~ 220 (286)
++++|+.
T Consensus 54 ~~~l~~~ 60 (270)
T PRK10513 54 LKELHME 60 (270)
T ss_pred HHHhCCC
Confidence 7777774
No 113
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.16 E-value=1.5e-05 Score=70.66 Aligned_cols=101 Identities=12% Similarity=0.016 Sum_probs=57.3
Q ss_pred cccHHHHHHHH-HHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCC--CCCch--HH---HhHHHHHH-h
Q 023192 177 PAIEASLKLYE-EVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSD--DHGKL--AI---IYKSEKRN-E 247 (286)
Q Consensus 177 ~~~pgv~ell~-~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~--~~~Kp--~~---~yKs~~r~-~ 247 (286)
.++|++.++++ .++++|++++++||+++ ..++...+..|+-+-++++...-. +.++. .. .-|....+ .
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~---~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~ 170 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQ---PLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQK 170 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcH---HHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHHH
Confidence 57899999996 78889999999999984 445555556444222233322100 10110 01 12322222 2
Q ss_pred HhhcCCeEEEEEcCChhhhccC-CCCCcEEEecCC
Q 023192 248 MVQEGYRILGNSGDQWSDLLGS-PMPSRSFKLPNP 281 (286)
Q Consensus 248 L~~~Gy~i~~~IGDq~sDl~ga-~~g~r~fkLPNp 281 (286)
+. ..+..+...||+.+|+.-- .++.....=|+|
T Consensus 171 ~~-~~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp~~ 204 (210)
T TIGR01545 171 IG-SPLKLYSGYSDSKQDNPLLAFCEHRWRVSKRG 204 (210)
T ss_pred hC-CChhheEEecCCcccHHHHHhCCCcEEECcch
Confidence 22 2456777899999999653 234444443543
No 114
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.15 E-value=6.2e-06 Score=72.39 Aligned_cols=56 Identities=27% Similarity=0.315 Sum_probs=45.8
Q ss_pred EEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh
Q 023192 137 WIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN 216 (286)
Q Consensus 137 vVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~ 216 (286)
|++||||||++. ....-|..++.+++|+++|+++++.|||+ .......+..
T Consensus 1 i~~DlDGTLl~~--------------------------~~~i~~~~~~al~~l~~~g~~~~i~TGR~---~~~~~~~~~~ 51 (254)
T PF08282_consen 1 IFSDLDGTLLNS--------------------------DGKISPETIEALKELQEKGIKLVIATGRS---YSSIKRLLKE 51 (254)
T ss_dssp EEEECCTTTCST--------------------------TSSSCHHHHHHHHHHHHTTCEEEEECSST---HHHHHHHHHH
T ss_pred cEEEECCceecC--------------------------CCeeCHHHHHHHHhhcccceEEEEEccCc---cccccccccc
Confidence 689999999963 12355789999999999999999999998 5567777888
Q ss_pred cCCCC
Q 023192 217 AGVRY 221 (286)
Q Consensus 217 ~Gi~~ 221 (286)
.++..
T Consensus 52 ~~~~~ 56 (254)
T PF08282_consen 52 LGIDD 56 (254)
T ss_dssp TTHCS
T ss_pred ccchh
Confidence 88763
No 115
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.15 E-value=6.8e-06 Score=72.49 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=43.5
Q ss_pred EEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh
Q 023192 137 WIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN 216 (286)
Q Consensus 137 vVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~ 216 (286)
|++||||||+++. ....+...+.+++|+++|++++++|||+ ...+...++.
T Consensus 2 i~~DlDGTLL~~~--------------------------~~~~~~~~~~l~~l~~~gi~~~i~TgR~---~~~~~~~~~~ 52 (221)
T TIGR02463 2 VFSDLDGTLLDSH--------------------------SYDWQPAAPWLTRLQEAGIPVILCTSKT---AAEVEYLQKA 52 (221)
T ss_pred EEEeCCCCCcCCC--------------------------CCCcHHHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHH
Confidence 7899999999641 1234457899999999999999999999 4556677777
Q ss_pred cCCC
Q 023192 217 AGVR 220 (286)
Q Consensus 217 ~Gi~ 220 (286)
+|+.
T Consensus 53 l~~~ 56 (221)
T TIGR02463 53 LGLT 56 (221)
T ss_pred cCCC
Confidence 7875
No 116
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.14 E-value=2e-05 Score=71.27 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=64.2
Q ss_pred cCCcccHHHHHHHHHH--HHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc-ceEEE-------------cCCCCCCc--
Q 023192 174 AMSPAIEASLKLYEEV--LGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW-DKLIL-------------RSSDDHGK-- 235 (286)
Q Consensus 174 ~~~~~~pgv~ell~~L--k~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~-~~Lil-------------r~~~~~~K-- 235 (286)
...|..||+.++++.+ ++.|+.++++|.-. --..+.+|+++|+... .+++. ++-..+..
T Consensus 68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaN---s~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~ 144 (234)
T PF06888_consen 68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDAN---SFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSL 144 (234)
T ss_pred HcCCCCccHHHHHHHHHhcCCCceEEEEeCCc---HhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCc
Confidence 4678889999999999 45799999999987 4568899999999763 33322 22222211
Q ss_pred -hHHHhHHHHHHhHhhc----C--CeEEEEEcCChhhhccC
Q 023192 236 -LAIIYKSEKRNEMVQE----G--YRILGNSGDQWSDLLGS 269 (286)
Q Consensus 236 -p~~~yKs~~r~~L~~~----G--y~i~~~IGDq~sDl~ga 269 (286)
|.-.=|..+..++... | |+-+++|||--+|+=.+
T Consensus 145 C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~ 185 (234)
T PF06888_consen 145 CPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPA 185 (234)
T ss_pred CCCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcc
Confidence 2111255555554443 4 78899999999999665
No 117
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.14 E-value=6.9e-06 Score=73.55 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=44.4
Q ss_pred EEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh
Q 023192 137 WIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN 216 (286)
Q Consensus 137 vVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~ 216 (286)
|+|||||||++. ....+.+.+.+++|+++|++++++|||+ +......+++
T Consensus 2 i~~DlDGTLl~~---------------------------~~~~~~~~~ai~~l~~~G~~~vi~TgR~---~~~~~~~~~~ 51 (225)
T TIGR02461 2 IFTDLDGTLLPP---------------------------GYEPGPAREALEELKDLGFPIVFVSSKT---RAEQEYYREE 51 (225)
T ss_pred EEEeCCCCCcCC---------------------------CCCchHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHH
Confidence 789999999952 1234578999999999999999999999 4456677788
Q ss_pred cCCCC
Q 023192 217 AGVRY 221 (286)
Q Consensus 217 ~Gi~~ 221 (286)
+|+..
T Consensus 52 lg~~~ 56 (225)
T TIGR02461 52 LGVEP 56 (225)
T ss_pred cCCCC
Confidence 88753
No 118
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.14 E-value=5.5e-06 Score=72.91 Aligned_cols=55 Identities=24% Similarity=0.231 Sum_probs=40.9
Q ss_pred EEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh
Q 023192 137 WIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN 216 (286)
Q Consensus 137 vVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~ 216 (286)
++||+||||+++. ...-+...+.+++|+++|++++++|||+.. ...+.++.
T Consensus 1 i~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~---~~~~~~~~ 51 (225)
T TIGR01482 1 IASDIDGTLTDPN--------------------------RAINESALEAIRKAESVGIPVVLVTGNSVQ---FARALAKL 51 (225)
T ss_pred CeEeccCccCCCC--------------------------cccCHHHHHHHHHHHHCCCEEEEEcCCchH---HHHHHHHH
Confidence 5799999999641 123456778899999999999999999943 33445566
Q ss_pred cCCC
Q 023192 217 AGVR 220 (286)
Q Consensus 217 ~Gi~ 220 (286)
+|++
T Consensus 52 l~~~ 55 (225)
T TIGR01482 52 IGTP 55 (225)
T ss_pred hCCC
Confidence 6654
No 119
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=98.12 E-value=1.7e-05 Score=71.01 Aligned_cols=101 Identities=11% Similarity=-0.059 Sum_probs=63.8
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhc---CCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhc
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINA---GVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQE 251 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~---Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~ 251 (286)
..+++|++.+++++|+++|++++++||.+. ......++.. ++..+..-+... ....||++..-....+++.-
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~---~~~~~~~~~~~~~~L~~~f~~~fd~-~~g~KP~p~~y~~i~~~lgv- 167 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSV---PAQKLLFGHSDAGNLTPYFSGYFDT-TVGLKTEAQSYVKIAGQLGS- 167 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHhhccccchhhhcceEEEe-CcccCCCHHHHHHHHHHhCc-
Confidence 457999999999999999999999999983 3344444443 443322212211 12246555321122222211
Q ss_pred CCeEEEEEcCChhhhccCC-CCCcEEEecC
Q 023192 252 GYRILGNSGDQWSDLLGSP-MPSRSFKLPN 280 (286)
Q Consensus 252 Gy~i~~~IGDq~sDl~ga~-~g~r~fkLPN 280 (286)
.-+.+++|||+..|+.+|+ +|++++.+..
T Consensus 168 ~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r 197 (220)
T TIGR01691 168 PPREILFLSDIINELDAARKAGLHTGQLVR 197 (220)
T ss_pred ChhHEEEEeCCHHHHHHHHHcCCEEEEEEC
Confidence 1235899999999999984 7999887743
No 120
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.11 E-value=8.5e-06 Score=73.88 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=48.1
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
.+.++|||||||++.. ...-+.+.+.+++++++|++++++|||+- ......
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~~~~~g~~v~iaTGR~~---~~~~~~ 53 (264)
T COG0561 3 IKLLAFDLDGTLLDSN--------------------------KTISPETKEALARLREKGVKVVLATGRPL---PDVLSI 53 (264)
T ss_pred eeEEEEcCCCCccCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEECCCCh---HHHHHH
Confidence 5789999999999641 23566788999999999999999999993 556777
Q ss_pred HHhcCCCC
Q 023192 214 LINAGVRY 221 (286)
Q Consensus 214 L~~~Gi~~ 221 (286)
++..|+..
T Consensus 54 ~~~l~~~~ 61 (264)
T COG0561 54 LEELGLDG 61 (264)
T ss_pred HHHcCCCc
Confidence 77888874
No 121
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.10 E-value=9.3e-06 Score=74.26 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=45.6
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHH
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVD 212 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~ 212 (286)
.++.|++||||||++.. ....+.+.+.+++|+++|++++++|||+. .....
T Consensus 6 ~~~lI~~DlDGTLL~~~--------------------------~~i~~~~~~ai~~l~~~Gi~~viaTGR~~---~~i~~ 56 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSH--------------------------TYDWQPAAPWLTRLREAQVPVILCSSKTA---AEMLP 56 (271)
T ss_pred CCeEEEEeCccCCcCCC--------------------------CcCcHHHHHHHHHHHHcCCeEEEEcCCCH---HHHHH
Confidence 36789999999999531 12335678889999999999999999994 44566
Q ss_pred HHHhcCCC
Q 023192 213 NLINAGVR 220 (286)
Q Consensus 213 ~L~~~Gi~ 220 (286)
.+++.|++
T Consensus 57 ~~~~l~~~ 64 (271)
T PRK03669 57 LQQTLGLQ 64 (271)
T ss_pred HHHHhCCC
Confidence 66777874
No 122
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.08 E-value=1.1e-05 Score=72.76 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=44.3
Q ss_pred EEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh
Q 023192 137 WIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN 216 (286)
Q Consensus 137 vVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~ 216 (286)
++|||||||++.. ...-+.+.+.+++|+++|++++++|||+ .......+++
T Consensus 2 i~~DlDGTLl~~~--------------------------~~i~~~~~~~i~~l~~~G~~~~iaTGR~---~~~~~~~~~~ 52 (256)
T TIGR00099 2 IFIDLDGTLLNDD--------------------------HTISPSTKEALAKLREKGIKVVLATGRP---YKEVKNILKE 52 (256)
T ss_pred EEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHH
Confidence 7899999999641 2344578899999999999999999999 3455667777
Q ss_pred cCCCC
Q 023192 217 AGVRY 221 (286)
Q Consensus 217 ~Gi~~ 221 (286)
.|+..
T Consensus 53 ~~~~~ 57 (256)
T TIGR00099 53 LGLDT 57 (256)
T ss_pred cCCCC
Confidence 88763
No 123
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.07 E-value=1.1e-05 Score=73.09 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=44.8
Q ss_pred EEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh
Q 023192 137 WIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN 216 (286)
Q Consensus 137 vVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~ 216 (286)
+++||||||++.. ...++...+.+++|+++|++++++|||+ .......+++
T Consensus 2 i~~DlDGTll~~~--------------------------~~~~~~~~~~i~~l~~~g~~~~~~TgR~---~~~~~~~~~~ 52 (256)
T TIGR01486 2 IFTDLDGTLLDPH--------------------------GYDWGPAKEVLERLQELGIPVIPCTSKT---AAEVEYLRKE 52 (256)
T ss_pred EEEcCCCCCcCCC--------------------------CcCchHHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHH
Confidence 7899999999541 1134458899999999999999999999 4556778888
Q ss_pred cCCCC
Q 023192 217 AGVRY 221 (286)
Q Consensus 217 ~Gi~~ 221 (286)
.|++.
T Consensus 53 ~~~~~ 57 (256)
T TIGR01486 53 LGLED 57 (256)
T ss_pred cCCCC
Confidence 88864
No 124
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.07 E-value=7.7e-06 Score=69.68 Aligned_cols=124 Identities=15% Similarity=0.037 Sum_probs=72.2
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHH-HHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPV-EFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVD 212 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~-~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~ 212 (286)
++.+|+|+||||+.+..--.. ....|... ..+.=...-.....||+.+||+.|.+. +.|++.|+.++.+ +..
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~y---A~~ 73 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPK---VDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEY---ADP 73 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCC---CCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHH---HHH
Confidence 468999999999966321100 00001000 000000011246789999999999887 9999999998554 444
Q ss_pred HHHhcCCCC--cceEEEcCCCCCCchHHHhHHHHHHhHhhcC--CeEEEEEcCChhhhccCC
Q 023192 213 NLINAGVRY--WDKLILRSSDDHGKLAIIYKSEKRNEMVQEG--YRILGNSGDQWSDLLGSP 270 (286)
Q Consensus 213 ~L~~~Gi~~--~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G--y~i~~~IGDq~sDl~ga~ 270 (286)
.|+..+... +...+.|......++. + .+.|...| .+-+++|||++.|+.++.
T Consensus 74 il~~ldp~~~~f~~~l~r~~~~~~~~~--~----~K~L~~l~~~~~~vIiVDD~~~~~~~~~ 129 (162)
T TIGR02251 74 VLDILDRGGKVISRRLYRESCVFTNGK--Y----VKDLSLVGKDLSKVIIIDNSPYSYSLQP 129 (162)
T ss_pred HHHHHCcCCCEEeEEEEccccEEeCCC--E----EeEchhcCCChhhEEEEeCChhhhccCc
Confidence 555555443 3455666544322222 1 22333334 335889999999998875
No 125
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.03 E-value=1.6e-05 Score=73.94 Aligned_cols=59 Identities=12% Similarity=0.013 Sum_probs=45.9
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
++.|++||||||++... ...+.+.+.+++|+++|+.+++.|||+ .......
T Consensus 1 ~KLIftDLDGTLLd~~~--------------------------~~~~~a~~aL~~Lk~~GI~vVlaTGRt---~~ev~~l 51 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEF--------------------------NSYGAARQALAALERRSIPLVLYSLRT---RAQLEHL 51 (302)
T ss_pred CcEEEEeCCCCCcCCCC--------------------------cCCHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHH
Confidence 46789999999997521 123457888999999999999999998 4556667
Q ss_pred HHhcCCCC
Q 023192 214 LINAGVRY 221 (286)
Q Consensus 214 L~~~Gi~~ 221 (286)
++++|+..
T Consensus 52 ~~~Lgl~~ 59 (302)
T PRK12702 52 CRQLRLEH 59 (302)
T ss_pred HHHhCCCC
Confidence 77788864
No 126
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.03 E-value=5.5e-06 Score=76.65 Aligned_cols=98 Identities=24% Similarity=0.374 Sum_probs=72.6
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITV 211 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~ 211 (286)
++.+.++||.||+|.. ...++||+.+.++.|+++|.+++|+||++...|+...
T Consensus 20 ~~~DtfifDcDGVlW~---------------------------g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~ 72 (306)
T KOG2882|consen 20 DSFDTFIFDCDGVLWL---------------------------GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYM 72 (306)
T ss_pred hhcCEEEEcCCcceee---------------------------cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHH
Confidence 5678999999998852 4689999999999999999999999999999899999
Q ss_pred HHHHhcCCCCc--ceE---------EEcCCCCCCc-hHHHhHHHHHHhHhhcCCeEE
Q 023192 212 DNLINAGVRYW--DKL---------ILRSSDDHGK-LAIIYKSEKRNEMVQEGYRIL 256 (286)
Q Consensus 212 ~~L~~~Gi~~~--~~L---------ilr~~~~~~K-p~~~yKs~~r~~L~~~Gy~i~ 256 (286)
+.++++|+... +.+ +++......| --+...++++++|++.|++..
T Consensus 73 kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~~~~k~Vyvig~~gi~~eL~~aG~~~~ 129 (306)
T KOG2882|consen 73 KKFAKLGFNSVKEENIFSSAYAIADYLKKRKPFGKKVYVIGEEGIREELDEAGFEYF 129 (306)
T ss_pred HHHHHhCccccCcccccChHHHHHHHHHHhCcCCCeEEEecchhhhHHHHHcCceee
Confidence 99999999732 111 1111111111 111235788899999886543
No 127
>PTZ00174 phosphomannomutase; Provisional
Probab=98.02 E-value=2.2e-05 Score=70.99 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=41.2
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHH
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVD 212 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~ 212 (286)
..+.|++||||||+++. ...-|...+.+++++++|++++++|||+.. ...+
T Consensus 4 ~~klia~DlDGTLL~~~--------------------------~~is~~~~~ai~~l~~~Gi~~viaTGR~~~---~i~~ 54 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPR--------------------------NPITQEMKDTLAKLKSKGFKIGVVGGSDYP---KIKE 54 (247)
T ss_pred CCeEEEEECcCCCcCCC--------------------------CCCCHHHHHHHHHHHHCCCEEEEEcCCCHH---HHHH
Confidence 36789999999999641 233456788899999999999999999843 3344
Q ss_pred HHH
Q 023192 213 NLI 215 (286)
Q Consensus 213 ~L~ 215 (286)
.|.
T Consensus 55 ~l~ 57 (247)
T PTZ00174 55 QLG 57 (247)
T ss_pred HHh
Confidence 444
No 128
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=97.98 E-value=1.2e-05 Score=72.31 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=50.1
Q ss_pred EEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh
Q 023192 137 WIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN 216 (286)
Q Consensus 137 vVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~ 216 (286)
++||+||||+++ ..++|++.+.++.++++|+++.|+||.+...+....+.|.+
T Consensus 1 ~lfD~DGvL~~~---------------------------~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~ 53 (236)
T TIGR01460 1 FLFDIDGVLWLG---------------------------HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSS 53 (236)
T ss_pred CEEeCcCccCcC---------------------------CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999854 35688999999999999999999998887778888899999
Q ss_pred -cCCCC
Q 023192 217 -AGVRY 221 (286)
Q Consensus 217 -~Gi~~ 221 (286)
.|++.
T Consensus 54 ~~g~~~ 59 (236)
T TIGR01460 54 LLGVDV 59 (236)
T ss_pred hcCCCC
Confidence 68864
No 129
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=97.95 E-value=6e-06 Score=70.27 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=63.3
Q ss_pred cEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCccc-HHHHHHHHHHHHCCCeEEEEcCCch---------
Q 023192 135 DAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAI-EASLKLYEEVLGLGFKIFLLTGRSE--------- 204 (286)
Q Consensus 135 ~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~-pgv~ell~~Lk~~G~~Ii~vTgR~e--------- 204 (286)
+...||+||||+.+... ..|. ..+++| ..+ |++.+.|++|.+.|++|+++||-..
T Consensus 1 Kia~fD~DgTLi~~~s~--------~~f~-~~~~D~------~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~ 65 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSG--------KKFP-KDPDDW------KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKD 65 (159)
T ss_dssp SEEEE-SCTTTEE-STS--------TTS--SSTCGG------EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCH
T ss_pred CEEEEeCCCCccCCCCC--------CcCc-CCHHHh------hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccch
Confidence 35789999999965321 1121 011111 233 4799999999999999999998631
Q ss_pred --hhHHHHHHHHHhcCCCCcceEEEcCC-CCCCchHHHhHHHHHHhHhhc-------CCeEEEEEcCChhh
Q 023192 205 --KQRSITVDNLINAGVRYWDKLILRSS-DDHGKLAIIYKSEKRNEMVQE-------GYRILGNSGDQWSD 265 (286)
Q Consensus 205 --~~r~~T~~~L~~~Gi~~~~~Lilr~~-~~~~Kp~~~yKs~~r~~L~~~-------Gy~i~~~IGDq~sD 265 (286)
..+......|+.+|++ . .++.... +.-+||.+ ++...+.+. ...-..+|||...+
T Consensus 66 ~~~~~~ki~~il~~l~ip-~-~~~~a~~~d~~RKP~~----GM~~~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 66 LENFHEKIENILKELGIP-I-QVYAAPHKDPCRKPNP----GMWEFALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp HHHHHHHHHHHHHHCTS--E-EEEECGCSSTTSTTSS----HHHHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred HHHHHHHHHHHHHHcCCc-e-EEEecCCCCCCCCCch----hHHHHHHHhccccccccccceEEEeccCCC
Confidence 2245567778888998 3 3344433 34578754 333333322 12358999997444
No 130
>PLN02887 hydrolase family protein
Probab=97.91 E-value=3.7e-05 Score=77.98 Aligned_cols=59 Identities=29% Similarity=0.363 Sum_probs=45.4
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHH
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVD 212 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~ 212 (286)
+++.|++||||||+++. ...-+..++.+++++++|++++++|||+ ......
T Consensus 307 ~iKLIa~DLDGTLLn~d--------------------------~~Is~~t~eAI~kl~ekGi~~vIATGR~---~~~i~~ 357 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSK--------------------------SQISETNAKALKEALSRGVKVVIATGKA---RPAVID 357 (580)
T ss_pred CccEEEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEcCCC---HHHHHH
Confidence 45789999999999641 2344567889999999999999999998 344555
Q ss_pred HHHhcCCC
Q 023192 213 NLINAGVR 220 (286)
Q Consensus 213 ~L~~~Gi~ 220 (286)
.++++|+.
T Consensus 358 ~l~~L~l~ 365 (580)
T PLN02887 358 ILKMVDLA 365 (580)
T ss_pred HHHHhCcc
Confidence 66666654
No 131
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=97.90 E-value=2.4e-05 Score=67.54 Aligned_cols=88 Identities=17% Similarity=0.128 Sum_probs=62.4
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
.+++.|++.++++.|+++|+++.++||.. +..+....+.+|+.. ..+..... +||.+.......+.|...+ .
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~---~~~a~~~~~~lgi~~--~~v~a~~~--~kP~~k~~~~~i~~l~~~~-~ 196 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDN---ESTASAIAKQLGIFD--SIVFARVI--GKPEPKIFLRIIKELQVKP-G 196 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSE---HHHHHHHHHHTTSCS--EEEEESHE--TTTHHHHHHHHHHHHTCTG-G
T ss_pred cCcchhhhhhhhhhhhccCcceeeeeccc---ccccccccccccccc--cccccccc--ccccchhHHHHHHHHhcCC-C
Confidence 46889999999999999999999999988 566777788899953 22222211 4565421144455555332 3
Q ss_pred EEEEEcCChhhhccCC
Q 023192 255 ILGNSGDQWSDLLGSP 270 (286)
Q Consensus 255 i~~~IGDq~sDl~ga~ 270 (286)
.+++|||..+|+.+.+
T Consensus 197 ~v~~vGDg~nD~~al~ 212 (215)
T PF00702_consen 197 EVAMVGDGVNDAPALK 212 (215)
T ss_dssp GEEEEESSGGHHHHHH
T ss_pred EEEEEccCHHHHHHHH
Confidence 7899999999997753
No 132
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=97.86 E-value=3.2e-05 Score=72.83 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=48.0
Q ss_pred EEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHC----CCeEEEEcCCchhhHHHHH
Q 023192 136 AWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGL----GFKIFLLTGRSEKQRSITV 211 (286)
Q Consensus 136 avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~----G~~Ii~vTgR~e~~r~~T~ 211 (286)
+++||+||||.++ .+++|++.++++.|+++ |++++|+||.....+....
T Consensus 2 ~~ifD~DGvL~~g---------------------------~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~ 54 (321)
T TIGR01456 2 GFAFDIDGVLFRG---------------------------KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARA 54 (321)
T ss_pred EEEEeCcCceECC---------------------------ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHH
Confidence 6899999999853 45699999999999998 9999999999865555555
Q ss_pred HHH-HhcCCC
Q 023192 212 DNL-INAGVR 220 (286)
Q Consensus 212 ~~L-~~~Gi~ 220 (286)
+.| +++|++
T Consensus 55 ~~l~~~lG~~ 64 (321)
T TIGR01456 55 EEISSLLGVD 64 (321)
T ss_pred HHHHHHcCCC
Confidence 555 788886
No 133
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.82 E-value=0.00016 Score=66.96 Aligned_cols=105 Identities=12% Similarity=0.078 Sum_probs=68.0
Q ss_pred CHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc-e-----EEEcCCC-CCCc
Q 023192 163 NPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD-K-----LILRSSD-DHGK 235 (286)
Q Consensus 163 ~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~-~-----Lilr~~~-~~~K 235 (286)
+.+...+++.....++.||+.+|++.|+++|++++++|+-. +..++..|+++|+.... . +....++ ..++
T Consensus 107 ~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~---~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~ 183 (277)
T TIGR01544 107 PKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGI---GNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGF 183 (277)
T ss_pred CHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCc---HHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCC
Confidence 34444444444578999999999999999999999999998 67788888888884222 1 1232222 2233
Q ss_pred hHH----HhHHH-HHH----hHh-hcCCeEEEEEcCChhhhccCC
Q 023192 236 LAI----IYKSE-KRN----EMV-QEGYRILGNSGDQWSDLLGSP 270 (286)
Q Consensus 236 p~~----~yKs~-~r~----~L~-~~Gy~i~~~IGDq~sDl~ga~ 270 (286)
+.+ ..|.+ .+. .+. ....+-++++||+.+|+..+.
T Consensus 184 ~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~ 228 (277)
T TIGR01544 184 KGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMAD 228 (277)
T ss_pred CCCcccccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhc
Confidence 322 12322 111 111 023556889999999999876
No 134
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.79 E-value=0.00027 Score=60.01 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=75.9
Q ss_pred CCCccEEEEecCCCccCCchhhh--hh-cCCCccCCHH------HHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcC
Q 023192 131 GDGKDAWIFDIDETLLSNLPYYQ--EH-GYGLEIFNPV------EFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTG 201 (286)
Q Consensus 131 ~~~~~avVfDIDgTLl~n~~~~~--~~-~~g~~~f~~~------~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTg 201 (286)
..++..+|+|+|+||+.+..-.. .. .......+.+ .|.-=.........||+.++|+.|++ +++++++|+
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~-~yel~I~T~ 81 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASK-LYEMHVYTM 81 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHh-hcEEEEEeC
Confidence 35788999999999997643110 00 0000000000 00000001235678999999999985 499999999
Q ss_pred CchhhHHHHHHHHHhcCCCC-c--ceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCCCCCcEEEe
Q 023192 202 RSEKQRSITVDNLINAGVRY-W--DKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSPMPSRSFKL 278 (286)
Q Consensus 202 R~e~~r~~T~~~L~~~Gi~~-~--~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~~g~r~fkL 278 (286)
.++. .+...|+..+... + +.++.|+... +. ..|. + ..+-...-+-++.|+|++.-..... .-.+.+
T Consensus 82 ~~~~---yA~~vl~~ldp~~~~F~~ri~~rd~~~-~~---~~Kd-L-~~i~~~d~~~vvivDd~~~~~~~~~--~N~i~i 150 (156)
T TIGR02250 82 GTRA---YAQAIAKLIDPDGKYFGDRIISRDESG-SP---HTKS-L-LRLFPADESMVVIIDDREDVWPWHK--RNLIQI 150 (156)
T ss_pred CcHH---HHHHHHHHhCcCCCeeccEEEEeccCC-CC---cccc-H-HHHcCCCcccEEEEeCCHHHhhcCc--cCEEEe
Confidence 9954 4555556666553 3 3455555432 11 1232 1 1111222445788999985555443 234555
Q ss_pred cCCCCC
Q 023192 279 PNPMYY 284 (286)
Q Consensus 279 PNp~Y~ 284 (286)
+-..||
T Consensus 151 ~~~~~f 156 (156)
T TIGR02250 151 EPYNYF 156 (156)
T ss_pred CCcccC
Confidence 554443
No 135
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.79 E-value=6.6e-05 Score=65.26 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=40.0
Q ss_pred EEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh
Q 023192 137 WIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN 216 (286)
Q Consensus 137 vVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~ 216 (286)
++||+||||+++. ..++-+.+.+.+++|+++|++++++|||+. ....+.+..
T Consensus 2 i~~D~DgTL~~~~-------------------------~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~---~~~~~~~~~ 53 (204)
T TIGR01484 2 LFFDLDGTLLDPN-------------------------AHELSPETIEALERLREAGVKVVLVTGRSL---AEIKELLKQ 53 (204)
T ss_pred EEEeCcCCCcCCC-------------------------CCcCCHHHHHHHHHHHHCCCEEEEECCCCH---HHHHHHHHh
Confidence 7899999999531 123557899999999999999999999994 344445554
No 136
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.72 E-value=0.00016 Score=72.99 Aligned_cols=83 Identities=18% Similarity=0.145 Sum_probs=62.6
Q ss_pred CCcccHHHHHHHHHHHHCC-CeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCC
Q 023192 175 MSPAIEASLKLYEEVLGLG-FKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGY 253 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G-~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy 253 (286)
.++++||+.+++++|+++| ++++++||.+ +..+.+.++++|+..+.. + .. | .-|....+++...|
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~---~~~a~~i~~~lgi~~~f~---~-~~----p--~~K~~~v~~l~~~~- 447 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDN---RSAAEAVAAELGIDEVHA---E-LL----P--EDKLAIVKELQEEG- 447 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCC---HHHHHHHHHHhCCCeeec---c-CC----H--HHHHHHHHHHHHcC-
Confidence 4789999999999999999 9999999998 567788889999964322 1 11 1 12444555555554
Q ss_pred eEEEEEcCChhhhccCCC
Q 023192 254 RILGNSGDQWSDLLGSPM 271 (286)
Q Consensus 254 ~i~~~IGDq~sDl~ga~~ 271 (286)
..+++|||..+|+.+++.
T Consensus 448 ~~v~~vGDg~nD~~al~~ 465 (556)
T TIGR01525 448 GVVAMVGDGINDAPALAA 465 (556)
T ss_pred CEEEEEECChhHHHHHhh
Confidence 378999999999988753
No 137
>PTZ00445 p36-lilke protein; Provisional
Probab=97.70 E-value=0.00021 Score=63.58 Aligned_cols=167 Identities=11% Similarity=0.061 Sum_probs=98.6
Q ss_pred HHHHhcccCCCccccHHHHHHHHHHhhhhhhccCCCccEEEEecCCCccCC--chhhhhhcCCCccCCHHHHHHHHHhcC
Q 023192 98 EYVRDYMMGRGYGLDLERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLSN--LPYYQEHGYGLEIFNPVEFDKWVEKAM 175 (286)
Q Consensus 98 ~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~~~~~~avVfDIDgTLl~n--~~~~~~~~~g~~~f~~~~~~~wv~~~~ 175 (286)
+.++.|..++++..- .--+.|..+.+.++ ..|.++|++|+|-||+.- -.|. ++-+ .- ..-.
T Consensus 11 ~~~~~~~~~~~~~~~--~~~~~~~~~v~~L~--~~GIk~Va~D~DnTlI~~HsgG~~-------~~~~--~~----~~~~ 73 (219)
T PTZ00445 11 DAFKEYIESGLFDHL--NPHESADKFVDLLN--ECGIKVIASDFDLTMITKHSGGYI-------DPDN--DD----IRVL 73 (219)
T ss_pred HHHHHHHHhcccccC--CHHHHHHHHHHHHH--HcCCeEEEecchhhhhhhhccccc-------CCCc--ch----hhhh
Confidence 456777777776642 33445556665554 467899999999999852 1111 0000 00 0112
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhh------------HHHHHHHHHhcCCCC--------cceEEEcCCC----
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQ------------RSITVDNLINAGVRY--------WDKLILRSSD---- 231 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~------------r~~T~~~L~~~Gi~~--------~~~Lilr~~~---- 231 (286)
..+.|....++++|++.|++|++||=.++.. .+....-|++-+... |...+-.+..
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~ 153 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPL 153 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhh
Confidence 3467889999999999999999999877532 234455555433221 0111111111
Q ss_pred CCCchHHHhHHH-HHHhHhhcC--CeEEEEEcCChhhhccCC-CCCcEEEecCC
Q 023192 232 DHGKLAIIYKSE-KRNEMVQEG--YRILGNSGDQWSDLLGSP-MPSRSFKLPNP 281 (286)
Q Consensus 232 ~~~Kp~~~yKs~-~r~~L~~~G--y~i~~~IGDq~sDl~ga~-~g~r~fkLPNp 281 (286)
.-.||++..|+- +..-+++.| ...++.|+|...-+.+|. .|..++-++++
T Consensus 154 gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 154 GLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred cccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 113555544332 122223333 457999999999998884 79999988875
No 138
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.65 E-value=0.00014 Score=62.74 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=65.6
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHH-HHHHh--cCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFD-KWVEK--AMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSIT 210 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~-~wv~~--~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T 210 (286)
++.||||+|.||.+-.-+. ..+ .||....=+ .-+.. .....+|++.++|+.|+++|++|+++|.-.+ -+.+
T Consensus 3 PklvvFDLD~TlW~~~~~~---~~~-~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~--P~~A 76 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDT---HVG-PPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDE--PDWA 76 (169)
T ss_dssp -SEEEE-STTTSSSS-TTT---SS--S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S---HHHH
T ss_pred CcEEEEcCcCCCCchhHhh---ccC-CCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCC--hHHH
Confidence 6799999999997532111 111 111100000 00001 1346789999999999999999999996543 3567
Q ss_pred HHHHHhcCCC----------Ccc-eEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccC-CCCCcEEEe
Q 023192 211 VDNLINAGVR----------YWD-KLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGS-PMPSRSFKL 278 (286)
Q Consensus 211 ~~~L~~~Gi~----------~~~-~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga-~~g~r~fkL 278 (286)
.+.|+.++++ .++ .+-.-+ ..| ...++ .++++.. -.|+..+.++|...-+... ..|-.++..
T Consensus 77 ~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~---gsK-~~Hf~-~i~~~tg-I~y~eMlFFDDe~~N~~~v~~lGV~~v~v 150 (169)
T PF12689_consen 77 RELLKLLEIDDADGDGVPLIEYFDYLEIYP---GSK-TTHFR-RIHRKTG-IPYEEMLFFDDESRNIEVVSKLGVTCVLV 150 (169)
T ss_dssp HHHHHHTT-C----------CCECEEEESS---S-H-HHHHH-HHHHHH----GGGEEEEES-HHHHHHHHTTT-EEEE-
T ss_pred HHHHHhcCCCccccccccchhhcchhheec---Cch-HHHHH-HHHHhcC-CChhHEEEecCchhcceeeEecCcEEEEe
Confidence 8889998988 321 111111 122 11122 1221111 1377899999987544333 378888888
Q ss_pred cC
Q 023192 279 PN 280 (286)
Q Consensus 279 PN 280 (286)
||
T Consensus 151 ~~ 152 (169)
T PF12689_consen 151 PD 152 (169)
T ss_dssp SS
T ss_pred CC
Confidence 87
No 139
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.62 E-value=0.00057 Score=61.02 Aligned_cols=133 Identities=16% Similarity=0.272 Sum_probs=82.4
Q ss_pred CCccEEEEecCCCccCCch-hhhhhcCCC--------ccCCHHHHHHHHHh-------------------cCCcccHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLP-YYQEHGYGL--------EIFNPVEFDKWVEK-------------------AMSPAIEASL 183 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~-~~~~~~~g~--------~~f~~~~~~~wv~~-------------------~~~~~~pgv~ 183 (286)
..+-.++||.|.|++|-.. -+.-...+. ..|...-|++++.. ...|..||++
T Consensus 11 ~~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv 90 (256)
T KOG3120|consen 11 SPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMV 90 (256)
T ss_pred CCcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHH
Confidence 3456789999999996422 221111111 01111236666553 4578889999
Q ss_pred HHHHHHHHCCC-eEEEEcCCchhhHHHHHHHHHhcCCCCc-c-------------eEEEcCCCC-C---CchHHHhHHHH
Q 023192 184 KLYEEVLGLGF-KIFLLTGRSEKQRSITVDNLINAGVRYW-D-------------KLILRSSDD-H---GKLAIIYKSEK 244 (286)
Q Consensus 184 ell~~Lk~~G~-~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~-~-------------~Lilr~~~~-~---~Kp~~~yKs~~ 244 (286)
++++.+++.|. .+++||.-. --..++||+++|+... . .|.+++-.. + ..|.-.=|-..
T Consensus 91 ~lik~~ak~g~~eliIVSDaN---sfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg~V 167 (256)
T KOG3120|consen 91 RLIKSAAKLGCFELIIVSDAN---SFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKGLV 167 (256)
T ss_pred HHHHHHHhCCCceEEEEecCc---hhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhhHH
Confidence 99999999996 999999876 3467899999998652 1 355555432 1 12322223222
Q ss_pred HH----hHhhcC--CeEEEEEcCChhhhc
Q 023192 245 RN----EMVQEG--YRILGNSGDQWSDLL 267 (286)
Q Consensus 245 r~----~L~~~G--y~i~~~IGDq~sDl~ 267 (286)
.. ...++| |+-.+++||.-+|+-
T Consensus 168 l~~~~~s~~~~gv~yer~iYvGDG~nD~C 196 (256)
T KOG3120|consen 168 LDELVASQLKDGVRYERLIYVGDGANDFC 196 (256)
T ss_pred HHHHHHHHhhcCCceeeEEEEcCCCCCcC
Confidence 22 222334 568999999999984
No 140
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.62 E-value=0.00016 Score=72.77 Aligned_cols=82 Identities=20% Similarity=0.177 Sum_probs=63.4
Q ss_pred CCcccHHHHHHHHHHHHCCC-eEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCC
Q 023192 175 MSPAIEASLKLYEEVLGLGF-KIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGY 253 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~-~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy 253 (286)
.+++.|++.+.+++|+++|+ +++++||++ +..+...++++|+..+..-.. | .-|....+++..+|
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~---~~~a~~i~~~lgi~~~f~~~~--------p--~~K~~~i~~l~~~~- 425 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDR---RAVAERVARELGIDEVHAELL--------P--EDKLEIVKELREKY- 425 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCC---HHHHHHHHHHcCChhhhhccC--------c--HHHHHHHHHHHhcC-
Confidence 57899999999999999999 999999998 567888889999975432111 1 12445555665554
Q ss_pred eEEEEEcCChhhhccCC
Q 023192 254 RILGNSGDQWSDLLGSP 270 (286)
Q Consensus 254 ~i~~~IGDq~sDl~ga~ 270 (286)
+.++++||..+|+.+++
T Consensus 426 ~~v~~vGDg~nD~~al~ 442 (536)
T TIGR01512 426 GPVAMVGDGINDAPALA 442 (536)
T ss_pred CEEEEEeCCHHHHHHHH
Confidence 67889999999998865
No 141
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.62 E-value=0.00017 Score=73.85 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=45.6
Q ss_pred CCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHH
Q 023192 131 GDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSIT 210 (286)
Q Consensus 131 ~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T 210 (286)
+-.++.|++||||||+++.. ...+.+.+.++.|+++|++++++|||+. ...
T Consensus 413 ~~~~KLIfsDLDGTLLd~d~--------------------------~i~~~t~eAL~~L~ekGI~~VIATGRs~---~~i 463 (694)
T PRK14502 413 GQFKKIVYTDLDGTLLNPLT--------------------------YSYSTALDALRLLKDKELPLVFCSAKTM---GEQ 463 (694)
T ss_pred CceeeEEEEECcCCCcCCCC--------------------------ccCHHHHHHHHHHHHcCCeEEEEeCCCH---HHH
Confidence 34567899999999996521 1223567889999999999999999994 445
Q ss_pred HHHHHhcCCC
Q 023192 211 VDNLINAGVR 220 (286)
Q Consensus 211 ~~~L~~~Gi~ 220 (286)
...++.+|+.
T Consensus 464 ~~l~~~Lgl~ 473 (694)
T PRK14502 464 DLYRNELGIK 473 (694)
T ss_pred HHHHHHcCCC
Confidence 5666777765
No 142
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.61 E-value=0.00019 Score=64.69 Aligned_cols=60 Identities=20% Similarity=0.125 Sum_probs=44.3
Q ss_pred EEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHH
Q 023192 136 AWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLI 215 (286)
Q Consensus 136 avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~ 215 (286)
.|+.|+||||++... ...+..|...+++++++++|+.++++|||+. ....+.++
T Consensus 3 li~tDlDGTLl~~~~-----------------------~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~---~~~~~~~~ 56 (249)
T TIGR01485 3 LLVSDLDNTLVDHTD-----------------------GDNQALLRLNALLEDHRGEDSLLVYSTGRSP---HSYKELQK 56 (249)
T ss_pred EEEEcCCCcCcCCCC-----------------------CChHHHHHHHHHHHHhhccCceEEEEcCCCH---HHHHHHHh
Confidence 688899999996210 0234567889999999999999999999993 44455556
Q ss_pred hcCCCC
Q 023192 216 NAGVRY 221 (286)
Q Consensus 216 ~~Gi~~ 221 (286)
..+++.
T Consensus 57 ~~~~~~ 62 (249)
T TIGR01485 57 QKPLLT 62 (249)
T ss_pred cCCCCC
Confidence 566653
No 143
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.60 E-value=0.00031 Score=71.13 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=61.0
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
.+++.|++.+++++|+++|++++++||.+ +..+...++++|++ + .... +| .-|....+++..+| +
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~---~~~a~~ia~~lgi~-~----~~~~----~p--~~K~~~v~~l~~~~-~ 467 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDN---RKTAKAVAKELGIN-V----RAEV----LP--DDKAALIKELQEKG-R 467 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCC---HHHHHHHHHHcCCc-E----EccC----Ch--HHHHHHHHHHHHcC-C
Confidence 47899999999999999999999999998 56677788889995 1 1111 11 12445555565544 5
Q ss_pred EEEEEcCChhhhccCC
Q 023192 255 ILGNSGDQWSDLLGSP 270 (286)
Q Consensus 255 i~~~IGDq~sDl~ga~ 270 (286)
.+++|||..+|+.+.+
T Consensus 468 ~v~~VGDg~nD~~al~ 483 (562)
T TIGR01511 468 VVAMVGDGINDAPALA 483 (562)
T ss_pred EEEEEeCCCccHHHHh
Confidence 7889999999998864
No 144
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00036 Score=65.39 Aligned_cols=124 Identities=17% Similarity=0.057 Sum_probs=84.2
Q ss_pred cEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhc-CCcccHHHHHHHHHHHHCC-CeEEEEcCCchhhHHHHHH
Q 023192 135 DAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKA-MSPAIEASLKLYEEVLGLG-FKIFLLTGRSEKQRSITVD 212 (286)
Q Consensus 135 ~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~-~~~~~pgv~ell~~Lk~~G-~~Ii~vTgR~e~~r~~T~~ 212 (286)
-.+|-|||+|+..+.--. --...|..|+... ...++||+..+|+.|.+.| ..+++||+.+...-....+
T Consensus 162 igiISDiDDTV~~T~V~~---------~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~e 232 (373)
T COG4850 162 IGIISDIDDTVKVTGVTE---------GPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQE 232 (373)
T ss_pred eeeeeccccceEeccccc---------chHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHH
Confidence 357899999998662100 0023567776654 5689999999999999998 8999999999887777778
Q ss_pred HHHhcCCCCcceEEEcCCCC---C-CchHHH-hHHHHHHhHhhcCCeEEEEEcCCh-hhhcc
Q 023192 213 NLINAGVRYWDKLILRSSDD---H-GKLAII-YKSEKRNEMVQEGYRILGNSGDQW-SDLLG 268 (286)
Q Consensus 213 ~L~~~Gi~~~~~Lilr~~~~---~-~Kp~~~-yKs~~r~~L~~~Gy~i~~~IGDq~-sDl~g 268 (286)
.|.+.+|| +..++++..+. . ..+... -+..+++-+.+.+-.-++.|||+= .|.+-
T Consensus 233 fi~~~~~P-~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~p~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 233 FITNRNFP-YGPLLLRRWGGVLDNIIESGAARKGQSLRNILRRYPDRKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHhcCCCC-CCchhHhhcCCcccccccchhhhcccHHHHHHHhCCCceEEEecCCCCcCHHH
Confidence 88888898 55666664321 0 011111 134566667766666677789864 56543
No 145
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=97.57 E-value=0.00026 Score=64.67 Aligned_cols=88 Identities=20% Similarity=0.347 Sum_probs=62.0
Q ss_pred CccEEEEecCCCccCCchhhhh-----hcC------CCccCC--HHHHHHHH----HhcCCccc-HHHHHHHHHHHHCCC
Q 023192 133 GKDAWIFDIDETLLSNLPYYQE-----HGY------GLEIFN--PVEFDKWV----EKAMSPAI-EASLKLYEEVLGLGF 194 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~-----~~~------g~~~f~--~~~~~~wv----~~~~~~~~-pgv~ell~~Lk~~G~ 194 (286)
..--||||||+||+-...+... ..+ +..... .+.+.+|+ ......++ +.+.++++.|+++|+
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 3456899999999854311111 001 111111 24567776 33444443 688999999999999
Q ss_pred eEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 195 KIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 195 ~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
+++-+|.|++..+..|.+.|+++|+.
T Consensus 99 ~v~alT~~~~~~~~~t~~~Lk~~gi~ 124 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLRELKSLGID 124 (252)
T ss_pred cEEEEcCCChhhHHHHHHHHHHCCCC
Confidence 99999999999999999999999996
No 146
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.56 E-value=0.00074 Score=60.23 Aligned_cols=113 Identities=11% Similarity=0.040 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHh----cCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCC-cceEEEcCCCC---
Q 023192 161 IFNPVEFDKWVEK----AMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRY-WDKLILRSSDD--- 232 (286)
Q Consensus 161 ~f~~~~~~~wv~~----~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~-~~~Lilr~~~~--- 232 (286)
.+|...|+++|.. ..-+|-+--.++|-.|+.++ -++.||-. +....+-|+++|+.+ |+.++.-....
T Consensus 80 ~~d~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~---k~HA~r~Lk~LGieDcFegii~~e~~np~~ 154 (244)
T KOG3109|consen 80 IFDADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAY---KVHAIRILKKLGIEDCFEGIICFETLNPIE 154 (244)
T ss_pred cCCHHHHHHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCc---HHHHHHHHHHhChHHhccceeEeeccCCCC
Confidence 4667778887764 34567777788888887766 67778887 778899999999987 56655443322
Q ss_pred C---CchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCC-CCCcEEEe
Q 023192 233 H---GKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSP-MPSRSFKL 278 (286)
Q Consensus 233 ~---~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~-~g~r~fkL 278 (286)
. .||.+..-+...+...-..++-+..++|+..-|++|+ .|.+++..
T Consensus 155 ~~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv 204 (244)
T KOG3109|consen 155 KTVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLV 204 (244)
T ss_pred CceeecCCHHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEE
Confidence 1 3565532111111111112457889999999999985 67777643
No 147
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.54 E-value=0.00019 Score=65.95 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=44.8
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHH-CCCeEEEEcCCchhhHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLG-LGFKIFLLTGRSEKQRSITVD 212 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~-~G~~Ii~vTgR~e~~r~~T~~ 212 (286)
...++||+||||++..+. + ....+-+.+.+.++.|++ .|+.++++|||+ .....+
T Consensus 14 ~~li~~D~DGTLl~~~~~------------p---------~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~---~~~~~~ 69 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPH------------P---------DQVVVPDNILQGLQLLATANDGALALISGRS---MVELDA 69 (266)
T ss_pred CEEEEEecCCCCCCCCCC------------c---------ccccCCHHHHHHHHHHHhCCCCcEEEEeCCC---HHHHHH
Confidence 458999999999953210 0 123556889999999998 799999999999 444556
Q ss_pred HHHhcCC
Q 023192 213 NLINAGV 219 (286)
Q Consensus 213 ~L~~~Gi 219 (286)
++...++
T Consensus 70 ~~~~~~~ 76 (266)
T PRK10187 70 LAKPYRF 76 (266)
T ss_pred hcCcccc
Confidence 6655443
No 148
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=97.53 E-value=0.00038 Score=66.37 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=64.7
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhc-C-------CCCcceEEEcCCCC---------------
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINA-G-------VRYWDKLILRSSDD--------------- 232 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~-G-------i~~~~~Lilr~~~~--------------- 232 (286)
..+.|++.++|++|+++|++++++||++ +..|...|+.+ | +..++..+..+...
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~---~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~ 259 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSD---YDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDV 259 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeC
Confidence 4568999999999999999999999998 56677777775 5 55544333332210
Q ss_pred -CC--c--------hHHHhH---HHHHHhHhhcCCeEEEEEcCCh-hhhccCC--CCCcEEEe
Q 023192 233 -HG--K--------LAIIYK---SEKRNEMVQEGYRILGNSGDQW-SDLLGSP--MPSRSFKL 278 (286)
Q Consensus 233 -~~--K--------p~~~yK---s~~r~~L~~~Gy~i~~~IGDq~-sDl~ga~--~g~r~fkL 278 (286)
.+ + +...|. .....++....-..+++|||+. +|+.+++ .|.|++.+
T Consensus 260 ~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI 322 (343)
T TIGR02244 260 ETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAI 322 (343)
T ss_pred CCCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEE
Confidence 00 0 001121 1111111112235789999999 9999996 89999854
No 149
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=97.52 E-value=0.00029 Score=68.28 Aligned_cols=121 Identities=24% Similarity=0.229 Sum_probs=82.4
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
.+.||+|||||+..+... .|.+ -..+++----||.+++......|++|.++|+|+-.+...|..-
T Consensus 375 ~kiVVsDiDGTITkSD~~--Ghv~-------------~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsy 439 (580)
T COG5083 375 KKIVVSDIDGTITKSDAL--GHVK-------------QMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSY 439 (580)
T ss_pred CcEEEEecCCcEEehhhH--HHHH-------------HHhccchhhcchhhhhhhhccCceEEEEEecccccchhhhhhH
Confidence 578999999999865211 0000 0112222334888999999899999999999999888777766
Q ss_pred HHh---cCCCCcc-eEEEcCCCC---------CCchHHHhHHHHHHhHhhcCCeE---EEEEcCChhhhccCC
Q 023192 214 LIN---AGVRYWD-KLILRSSDD---------HGKLAIIYKSEKRNEMVQEGYRI---LGNSGDQWSDLLGSP 270 (286)
Q Consensus 214 L~~---~Gi~~~~-~Lilr~~~~---------~~Kp~~~yKs~~r~~L~~~Gy~i---~~~IGDq~sDl~ga~ 270 (286)
|+. .|+.-|+ .++|.++.. -+||. .+|.+..+.|+..+..- .+-+|...+|..+.+
T Consensus 440 lrnieQngykLpdgpviLspd~t~aal~relIlrkpE-~FKiayLndl~slf~e~~PFyAGFGNriTDvisY~ 511 (580)
T COG5083 440 LRNIEQNGYKLPDGPVILSPDRTMAALYRELILRKPE-VFKIAYLNDLKSLFIEFDPFYAGFGNRITDVISYS 511 (580)
T ss_pred HHhhhhcCccCCCCCEeeccchhhhhhhhhhhhcChH-HHHHHHHHHHHHhhCcCChhhccccccchhheeec
Confidence 654 5776554 467766541 13333 47888888888776542 346899999998764
No 150
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=97.45 E-value=0.00049 Score=61.03 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=75.5
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHH
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVD 212 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~ 212 (286)
+.+.+++||-|||.. ...++||+.+.++.|+..+.+|=|+||-+.+.+....+
T Consensus 6 ~v~gvLlDlSGtLh~---------------------------e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~ 58 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHI---------------------------EDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHE 58 (262)
T ss_pred ccceEEEeccceEec---------------------------ccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHH
Confidence 457899999999963 24599999999999999999999999999888888899
Q ss_pred HHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCCh-hhhccCC
Q 023192 213 NLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQW-SDLLGSP 270 (286)
Q Consensus 213 ~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~-sDl~ga~ 270 (286)
.|.+.||..-++-+..+ . ...+.-+++.+++.-..|.|.. .|+.|-.
T Consensus 59 rL~rlgf~v~eeei~ts-------l----~aa~~~~~~~~lrP~l~v~d~a~~dF~gid 106 (262)
T KOG3040|consen 59 RLQRLGFDVSEEEIFTS-------L----PAARQYLEENQLRPYLIVDDDALEDFDGID 106 (262)
T ss_pred HHHHhCCCccHHHhcCc-------c----HHHHHHHHhcCCCceEEEcccchhhCCCcc
Confidence 99999997422212222 1 2345666777788766676654 7887753
No 151
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.44 E-value=0.0002 Score=64.82 Aligned_cols=102 Identities=12% Similarity=0.070 Sum_probs=73.1
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc-ceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeE
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW-DKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRI 255 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~-~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i 255 (286)
....++.+++++|+++|..+.++||=+...+ .-|...|+..| +.++......-.||++..-....+.+.. .-..
T Consensus 113 ~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~----~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v-~Pee 187 (237)
T KOG3085|consen 113 KYLDGMQELLQKLRKKGTILGIISNFDDRLR----LLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGV-KPEE 187 (237)
T ss_pred eeccHHHHHHHHHHhCCeEEEEecCCcHHHH----HHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCC-ChHH
Confidence 4567899999999999999999999886554 55677788654 5555555555568887432222222221 1457
Q ss_pred EEEEcCCh-hhhccCC-CCCcEEEecCCCC
Q 023192 256 LGNSGDQW-SDLLGSP-MPSRSFKLPNPMY 283 (286)
Q Consensus 256 ~~~IGDq~-sDl~ga~-~g~r~fkLPNp~Y 283 (286)
|+.|||.. +|+.||+ +|.+++.+-|.++
T Consensus 188 ~vhIgD~l~nD~~gA~~~G~~ailv~~~~~ 217 (237)
T KOG3085|consen 188 CVHIGDLLENDYEGARNLGWHAILVDNSIT 217 (237)
T ss_pred eEEecCccccccHhHHHcCCEEEEEccccc
Confidence 99999988 8999995 8999999888765
No 152
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.44 E-value=0.0003 Score=62.83 Aligned_cols=53 Identities=23% Similarity=0.206 Sum_probs=38.1
Q ss_pred EEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh
Q 023192 137 WIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN 216 (286)
Q Consensus 137 vVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~ 216 (286)
+++|+||||+++.+. ++...+.++ ++++|++++++|||+ .....+.+..
T Consensus 2 i~~DlDgTLl~~~~~---------------------------~~~~~~~~~-~~~~gi~~viaTGR~---~~~v~~~~~~ 50 (236)
T TIGR02471 2 IITDLDNTLLGDDEG---------------------------LASFVELLR-GSGDAVGFGIATGRS---VESAKSRYAK 50 (236)
T ss_pred eEEeccccccCCHHH---------------------------HHHHHHHHH-hcCCCceEEEEeCCC---HHHHHHHHHh
Confidence 789999999964211 111225666 588999999999999 5566777777
Q ss_pred cCCC
Q 023192 217 AGVR 220 (286)
Q Consensus 217 ~Gi~ 220 (286)
.++.
T Consensus 51 l~l~ 54 (236)
T TIGR02471 51 LNLP 54 (236)
T ss_pred CCCC
Confidence 7775
No 153
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.0006 Score=59.35 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=58.3
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcC----CCC---c-ceEEEcCCCCC---CchHHH---h
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAG----VRY---W-DKLILRSSDDH---GKLAII---Y 240 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~G----i~~---~-~~Lilr~~~~~---~Kp~~~---y 240 (286)
....-||..++++..+++++++++||+-.+-. ....|...+ +.. + .......++.+ .+.+.. -
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~f---I~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~d 147 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPF---IYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHD 147 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchH---HHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCC
Confidence 46677899999999999999999999987543 233333333 211 1 11222222211 011111 1
Q ss_pred HHHHHHhHhhcCCeEEEEEcCChhhhccCCCCC
Q 023192 241 KSEKRNEMVQEGYRILGNSGDQWSDLLGSPMPS 273 (286)
Q Consensus 241 Ks~~r~~L~~~Gy~i~~~IGDq~sDl~ga~~g~ 273 (286)
|+....++.+ .++-+.+.||+.+|+.+|+...
T Consensus 148 K~~vI~~l~e-~~e~~fy~GDsvsDlsaaklsD 179 (220)
T COG4359 148 KSSVIHELSE-PNESIFYCGDSVSDLSAAKLSD 179 (220)
T ss_pred cchhHHHhhc-CCceEEEecCCcccccHhhhhh
Confidence 5555666654 4677999999999999987443
No 154
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=97.42 E-value=0.00087 Score=67.74 Aligned_cols=120 Identities=22% Similarity=0.231 Sum_probs=79.1
Q ss_pred cEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHH
Q 023192 135 DAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNL 214 (286)
Q Consensus 135 ~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L 214 (286)
+.||=|||||+..+.-. .|.++ .-+++=.--|+.+||.+.++.||+++|+|+|.-.|...|...|
T Consensus 531 kIVISDIDGTITKSDvL--Gh~lp-------------~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL 595 (738)
T KOG2116|consen 531 KIVISDIDGTITKSDVL--GHVLP-------------MIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYL 595 (738)
T ss_pred cEEEecCCCceEhhhhh--hhhhh-------------hhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHH
Confidence 46788999999854211 00000 0122333459999999999999999999999998888888777
Q ss_pred Hhc---CCCCc-ceEEEcCCCC---------CCchHHHhHHHHHHhHhhc----CCeEEEEEcCChhhhccCC
Q 023192 215 INA---GVRYW-DKLILRSSDD---------HGKLAIIYKSEKRNEMVQE----GYRILGNSGDQWSDLLGSP 270 (286)
Q Consensus 215 ~~~---Gi~~~-~~Lilr~~~~---------~~Kp~~~yKs~~r~~L~~~----Gy~i~~~IGDq~sDl~ga~ 270 (286)
+.. |..-- ..+++.++.- .+||. .||-+..+.|+.. +----+-+|...+|.....
T Consensus 596 ~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe-~FKIAcL~DIk~LF~p~~nPFYAgFGNR~TDviSY~ 667 (738)
T KOG2116|consen 596 KNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPE-VFKIACLTDIKNLFPPSGNPFYAGFGNRITDVISYR 667 (738)
T ss_pred HHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCch-hhhHHHHHHHHHhcCCCCCceeeecCCCcccceeee
Confidence 665 44311 3477777652 14443 3676666666543 2224677999999998763
No 155
>PLN02423 phosphomannomutase
Probab=97.40 E-value=0.0003 Score=63.71 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=34.4
Q ss_pred CccEEE-EecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCc
Q 023192 133 GKDAWI-FDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRS 203 (286)
Q Consensus 133 ~~~avV-fDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~ 203 (286)
++++++ |||||||+++. ...-|...+.+++|+++ +.++++|||.
T Consensus 5 ~~~~i~~~D~DGTLl~~~--------------------------~~i~~~~~~ai~~l~~~-i~fviaTGR~ 49 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPR--------------------------KEATPEMLEFMKELRKV-VTVGVVGGSD 49 (245)
T ss_pred ccceEEEEeccCCCcCCC--------------------------CcCCHHHHHHHHHHHhC-CEEEEECCcC
Confidence 456666 99999999541 22335778889999976 9999999996
No 156
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.00069 Score=58.03 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=78.6
Q ss_pred EEEEecCCCccCCc---h----hhhhhcCCC--ccCC--------HHHHHHHHHhcCCcc------cHHHHHHHHHHHHC
Q 023192 136 AWIFDIDETLLSNL---P----YYQEHGYGL--EIFN--------PVEFDKWVEKAMSPA------IEASLKLYEEVLGL 192 (286)
Q Consensus 136 avVfDIDgTLl~n~---~----~~~~~~~g~--~~f~--------~~~~~~wv~~~~~~~------~pgv~ell~~Lk~~ 192 (286)
-+.+|||||+.+-. | ++.+.--.. ..|+ .++|.+|.+..+... -.++...+..+++
T Consensus 8 ~~ciDIDGtit~~~t~~~~~n~~f~kslse~d~t~y~lhkil~i~~ee~~k~~e~~ea~l~ke~l~~q~v~~~L~~~~e- 86 (194)
T COG5663 8 RCCIDIDGTITDDPTFAPYLNPAFEKSLSEADPTDYDLHKILNITTEEFWKWMEQTEAWLYKEALLAQLVKQVLPSLKE- 86 (194)
T ss_pred heeeccCCceecCcccchhccHHHHhhhhhcccccccHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-
Confidence 46799999998642 2 222211111 1122 467888887643333 2355556666655
Q ss_pred CCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCCh-hhhccCC-
Q 023192 193 GFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQW-SDLLGSP- 270 (286)
Q Consensus 193 G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~-sDl~ga~- 270 (286)
..+++++|+|....-..|.+||....++ |+++.+.+.. +| + ...| .+++-+.+.|+- +-.+.++
T Consensus 87 ~~~L~~itar~~dl~~iT~~~l~~q~ih-~~~l~i~g~h--~K--V---~~vr------th~idlf~ed~~~na~~iAk~ 152 (194)
T COG5663 87 EHRLIYITARKADLTRITYAWLFIQNIH-YDHLEIVGLH--HK--V---EAVR------THNIDLFFEDSHDNAGQIAKN 152 (194)
T ss_pred hceeeeeehhhHHHHHHHHHHHHHhccc-hhhhhhhccc--cc--c---hhhH------hhccCccccccCchHHHHHHh
Confidence 4899999999988889999999999998 8887665433 23 0 1111 234556677765 3344444
Q ss_pred CCCcEEEec
Q 023192 271 MPSRSFKLP 279 (286)
Q Consensus 271 ~g~r~fkLP 279 (286)
+|.++..+-
T Consensus 153 ~~~~vilin 161 (194)
T COG5663 153 AGIPVILIN 161 (194)
T ss_pred cCCcEEEec
Confidence 676655443
No 157
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.19 E-value=0.0012 Score=54.60 Aligned_cols=117 Identities=13% Similarity=0.087 Sum_probs=71.0
Q ss_pred EEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHh--cCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 136 AWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEK--AMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 136 avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~--~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
+|+||.|||+.|.-.... + ..||..-+-+.-... .....+|.+.++++.++..|+-+...|=+. .....+-
T Consensus 2 ~i~~d~d~t~wdhh~iSs---l-~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~---~~kA~~a 74 (164)
T COG4996 2 AIVFDADKTLWDHHNISS---L-EPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNF---EDKAIKA 74 (164)
T ss_pred cEEEeCCCcccccccchh---c-CCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCc---hHHHHHH
Confidence 799999999986411100 0 012321000111111 234678999999999999999999999887 4567888
Q ss_pred HHhcCCCCcceEEEcCCCCCCchHHHhH------HHHHHhHhhcCCeEEEEEcCCh
Q 023192 214 LINAGVRYWDKLILRSSDDHGKLAIIYK------SEKRNEMVQEGYRILGNSGDQW 263 (286)
Q Consensus 214 L~~~Gi~~~~~Lilr~~~~~~Kp~~~yK------s~~r~~L~~~Gy~i~~~IGDq~ 263 (286)
|+.+|+..|++.+.-.+.. .|.-..++ .+.+.++. ...+++++|+.
T Consensus 75 Lral~~~~yFhy~ViePhP-~K~~ML~~llr~i~~er~~~ik---P~~Ivy~DDR~ 126 (164)
T COG4996 75 LRALDLLQYFHYIVIEPHP-YKFLMLSQLLREINTERNQKIK---PSEIVYLDDRR 126 (164)
T ss_pred HHHhchhhhEEEEEecCCC-hhHHHHHHHHHHHHHhhccccC---cceEEEEeccc
Confidence 9999999888766654432 23222222 11112222 23678899875
No 158
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.05 E-value=0.0032 Score=67.10 Aligned_cols=92 Identities=15% Similarity=0.184 Sum_probs=66.1
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCC-CC----------------CchH
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSD-DH----------------GKLA 237 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~-~~----------------~Kp~ 237 (286)
.+++.|++.+.++.|++.|++++++||.. +..+....++.|+.......+.+.. +. ....
T Consensus 526 ~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~---~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~ 602 (884)
T TIGR01522 526 NDPPRPGVKEAVTTLITGGVRIIMITGDS---QETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARAS 602 (884)
T ss_pred cCcchhHHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECC
Confidence 46899999999999999999999999998 4556666678899643221111100 00 0123
Q ss_pred HHhHHHHHHhHhhcCCeEEEEEcCChhhhccCC
Q 023192 238 IIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSP 270 (286)
Q Consensus 238 ~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~ 270 (286)
+.-|..+-+.+++.| .+++++||..+|..+.+
T Consensus 603 P~~K~~iv~~lq~~g-~~v~mvGDGvND~pAl~ 634 (884)
T TIGR01522 603 PEHKMKIVKALQKRG-DVVAMTGDGVNDAPALK 634 (884)
T ss_pred HHHHHHHHHHHHHCC-CEEEEECCCcccHHHHH
Confidence 455778888888877 47889999999997754
No 159
>PLN03017 trehalose-phosphatase
Probab=97.01 E-value=0.0022 Score=61.56 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=38.7
Q ss_pred CCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 131 GDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 131 ~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
..++-++++|+||||+.-... + ..+.+-+++.+.|++|. +|+.++++|||+.
T Consensus 108 ~~k~~llflD~DGTL~Piv~~------------p---------~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~ 159 (366)
T PLN03017 108 RGKQIVMFLDYDGTLSPIVDD------------P---------DKAFMSSKMRRTVKKLA-KCFPTAIVTGRCI 159 (366)
T ss_pred cCCCeEEEEecCCcCcCCcCC------------c---------ccccCCHHHHHHHHHHh-cCCcEEEEeCCCH
Confidence 445668888999999831100 0 12467789999999998 7899999999983
No 160
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.97 E-value=0.00031 Score=63.24 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=58.4
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEE---EcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLI---LRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Li---lr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
-++++.++++.++++|+++ ++||++.... ...+...|...+...+ .......+||.+..-....+.+.....+
T Consensus 139 ~~~~~~~~l~~l~~~g~~~-i~tN~d~~~~---~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~ 214 (242)
T TIGR01459 139 DLDEFDELFAPIVARKIPN-ICANPDRGIN---QHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKN 214 (242)
T ss_pred CHHHHHHHHHHHHhCCCcE-EEECCCEecc---CCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcc
Confidence 3689999999998899997 8899885432 2234444543332222 2222235787764322333333211123
Q ss_pred EEEEEcCC-hhhhccCC-CCCcEEE
Q 023192 255 ILGNSGDQ-WSDLLGSP-MPSRSFK 277 (286)
Q Consensus 255 i~~~IGDq-~sDl~ga~-~g~r~fk 277 (286)
.+++|||+ .+|+.+|+ +|.+++.
T Consensus 215 ~~~~vGD~~~~Di~~a~~~G~~~i~ 239 (242)
T TIGR01459 215 RMLMVGDSFYTDILGANRLGIDTAL 239 (242)
T ss_pred cEEEECCCcHHHHHHHHHCCCeEEE
Confidence 68999999 69999985 6877654
No 161
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=96.94 E-value=0.0031 Score=66.01 Aligned_cols=80 Identities=19% Similarity=0.128 Sum_probs=60.8
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
.+++.|++.+.+++|+++|++++++||.. +..+....++.|+..+.. . .| .-|....+++++. .
T Consensus 566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~---~~~a~~ia~~lgi~~~~~-----~----~p--~~K~~~v~~l~~~--~ 629 (741)
T PRK11033 566 QDTLRADARQAISELKALGIKGVMLTGDN---PRAAAAIAGELGIDFRAG-----L----LP--EDKVKAVTELNQH--A 629 (741)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHcCCCeecC-----C----CH--HHHHHHHHHHhcC--C
Confidence 47899999999999999999999999998 567788889999962211 1 11 2355555666543 3
Q ss_pred EEEEEcCChhhhccCC
Q 023192 255 ILGNSGDQWSDLLGSP 270 (286)
Q Consensus 255 i~~~IGDq~sDl~ga~ 270 (286)
.+++|||..+|..+.+
T Consensus 630 ~v~mvGDgiNDapAl~ 645 (741)
T PRK11033 630 PLAMVGDGINDAPAMK 645 (741)
T ss_pred CEEEEECCHHhHHHHH
Confidence 6899999999987754
No 162
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=96.83 E-value=0.0071 Score=56.00 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=56.0
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITV 211 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~ 211 (286)
..+..||||+|+||+.... ....+-|.+.+-+++|++.|.-+++=|.-. ++...
T Consensus 120 ~~phVIVfDlD~TLItd~~-----------------------~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~---~eHV~ 173 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEG-----------------------DVRIRDPAVYDSLRELKEQGCVLVLWSYGN---REHVR 173 (297)
T ss_pred CCCcEEEEECCCcccccCC-----------------------ccccCChHHHHHHHHHHHcCCEEEEecCCC---HHHHH
Confidence 4467999999999994311 123456788899999999999999888877 56677
Q ss_pred HHHHhcCCCCcceEEEcCC
Q 023192 212 DNLINAGVRYWDKLILRSS 230 (286)
Q Consensus 212 ~~L~~~Gi~~~~~Lilr~~ 230 (286)
+.|++.|+++++.+++.+.
T Consensus 174 ~sl~~~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 174 HSLKELKLEGYFDIIICGG 192 (297)
T ss_pred HHHHHhCCccccEEEEeCC
Confidence 8888999988777666553
No 163
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.82 E-value=0.0019 Score=54.12 Aligned_cols=119 Identities=14% Similarity=0.101 Sum_probs=64.1
Q ss_pred cEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHH
Q 023192 135 DAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNL 214 (286)
Q Consensus 135 ~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L 214 (286)
+.+|||+||||+++...... +.+...- .-.........||+.+||+.+.+ .+.|++.|+.++.+.....+.|
T Consensus 1 k~LVlDLD~TLv~~~~~~~~------~~~~~~~-~~~~~~~v~~RP~l~~FL~~l~~-~~ev~i~T~~~~~ya~~v~~~l 72 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL------PYDFKII-DQRGGYYVKLRPGLDEFLEELSK-HYEVVIWTSASEEYAEPVLDAL 72 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT------T-SEEEE-TEEEEEEEEE-TTHHHHHHHHHH-HCEEEEE-SS-HHHHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCC------Cccccee-ccccceeEeeCchHHHHHHHHHH-hceEEEEEeehhhhhhHHHHhh
Confidence 47899999999976432100 0000000 00001124578999999999955 5999999999987777777777
Q ss_pred HhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcC--CeEEEEEcCChhhhcc
Q 023192 215 INAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEG--YRILGNSGDQWSDLLG 268 (286)
Q Consensus 215 ~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G--y~i~~~IGDq~sDl~g 268 (286)
...+-. +...+.|......+. .+ .+.|..-| ..-++.|+|.+.-...
T Consensus 73 dp~~~~-~~~~~~r~~~~~~~~--~~----~KdL~~l~~~~~~vvivDD~~~~~~~ 121 (159)
T PF03031_consen 73 DPNGKL-FSRRLYRDDCTFDKG--SY----IKDLSKLGRDLDNVVIVDDSPRKWAL 121 (159)
T ss_dssp TTTTSS-EEEEEEGGGSEEETT--EE----E--GGGSSS-GGGEEEEES-GGGGTT
T ss_pred hhhccc-ccccccccccccccc--cc----ccchHHHhhccccEEEEeCCHHHeec
Confidence 654322 456666654321110 01 13344434 3567889999875544
No 164
>PLN02151 trehalose-phosphatase
Probab=96.76 E-value=0.0038 Score=59.73 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=45.0
Q ss_pred ccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHH
Q 023192 129 LRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRS 208 (286)
Q Consensus 129 ~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~ 208 (286)
....++-++++|+||||+.-.+. + ..+.+-|++.+.|+.|. .+..++++|||+ +.
T Consensus 93 ~~~~~~~ll~lDyDGTL~PIv~~------------P---------~~A~~~~~~~~aL~~La-~~~~vaIvSGR~---~~ 147 (354)
T PLN02151 93 KSEGKQIVMFLDYDGTLSPIVDD------------P---------DRAFMSKKMRNTVRKLA-KCFPTAIVSGRC---RE 147 (354)
T ss_pred hhcCCceEEEEecCccCCCCCCC------------c---------ccccCCHHHHHHHHHHh-cCCCEEEEECCC---HH
Confidence 33445678899999999842110 1 13567889999999998 468999999998 55
Q ss_pred HHHHHHH
Q 023192 209 ITVDNLI 215 (286)
Q Consensus 209 ~T~~~L~ 215 (286)
...+++.
T Consensus 148 ~l~~~~~ 154 (354)
T PLN02151 148 KVSSFVK 154 (354)
T ss_pred HHHHHcC
Confidence 5566654
No 165
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=96.71 E-value=0.0028 Score=66.08 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=46.6
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHH-CCCeEEEEcCCchhhHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLG-LGFKIFLLTGRSEKQRSIT 210 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~-~G~~Ii~vTgR~e~~r~~T 210 (286)
..+..++||+||||++.... + ....+-+.+.+.+++|.+ .|..++++|||+ +...
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~------------~---------~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~---~~~l 545 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPD------------P---------ELAVPDKELRDLLRRLAADPNTDVAIISGRD---RDTL 545 (726)
T ss_pred ccceEEEEecCccccCCCCC------------c---------ccCCCCHHHHHHHHHHHcCCCCeEEEEeCCC---HHHH
Confidence 34679999999999964210 0 124566889999999999 499999999998 4555
Q ss_pred HHHHHhcC
Q 023192 211 VDNLINAG 218 (286)
Q Consensus 211 ~~~L~~~G 218 (286)
.+++...+
T Consensus 546 ~~~~~~~~ 553 (726)
T PRK14501 546 ERWFGDLP 553 (726)
T ss_pred HHHhCCCC
Confidence 66665444
No 166
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.65 E-value=0.007 Score=64.10 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=61.5
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
.+++.|++.+.+++|++.|++++++||.+ +..+...+++.|++. .+.. . .| ..|....+++...| .
T Consensus 648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~---~~~a~~ia~~lgi~~---~~~~-~----~p--~~K~~~i~~l~~~~-~ 713 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKAGYRLVMLTGDN---PTTANAIAKEAGIDE---VIAG-V----LP--DGKAEAIKRLQSQG-R 713 (834)
T ss_pred cCcchhhHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHHcCCCE---EEeC-C----CH--HHHHHHHHHHhhcC-C
Confidence 46888999999999999999999999988 456667788889963 2211 1 12 23556666666554 4
Q ss_pred EEEEEcCChhhhccCC
Q 023192 255 ILGNSGDQWSDLLGSP 270 (286)
Q Consensus 255 i~~~IGDq~sDl~ga~ 270 (286)
.+++|||..+|+.+.+
T Consensus 714 ~v~~vGDg~nD~~al~ 729 (834)
T PRK10671 714 QVAMVGDGINDAPALA 729 (834)
T ss_pred EEEEEeCCHHHHHHHH
Confidence 6889999999998764
No 167
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0047 Score=64.19 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=61.7
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
.+++.|++.+.+++|+++|++++++||-. +...++.-++.|+..+..-+ . |+-|.+.-++|+++| +
T Consensus 535 ~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn---~~~A~~iA~~lGId~v~Ael--------l--PedK~~~V~~l~~~g-~ 600 (713)
T COG2217 535 ADELRPDAKEAIAALKALGIKVVMLTGDN---RRTAEAIAKELGIDEVRAEL--------L--PEDKAEIVRELQAEG-R 600 (713)
T ss_pred eCCCChhHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHHcChHhheccC--------C--cHHHHHHHHHHHhcC-C
Confidence 57899999999999999999999999987 44555666778996542211 1 234778888888765 6
Q ss_pred EEEEEcCChhhhcc
Q 023192 255 ILGNSGDQWSDLLG 268 (286)
Q Consensus 255 i~~~IGDq~sDl~g 268 (286)
.+++|||-.||--+
T Consensus 601 ~VamVGDGINDAPA 614 (713)
T COG2217 601 KVAMVGDGINDAPA 614 (713)
T ss_pred EEEEEeCCchhHHH
Confidence 78899999999744
No 168
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.61 E-value=0.0037 Score=56.34 Aligned_cols=50 Identities=26% Similarity=0.443 Sum_probs=37.6
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHC-CCeEEEEcCCc
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGL-GFKIFLLTGRS 203 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~-G~~Ii~vTgR~ 203 (286)
++.+++||+||||+...+. + ....+-+++.+.|+.|.+. +..++++|||+
T Consensus 2 ~~~~l~lD~DGTL~~~~~~------------p---------~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPD------------P---------DAAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CcEEEEEecCccccCCcCC------------C---------cccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 3568999999999853110 1 1356778999999999776 56788999997
No 169
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.0046 Score=56.98 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=47.0
Q ss_pred CCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHC-CCeEEEEcCCchhhHHH
Q 023192 131 GDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGL-GFKIFLLTGRSEKQRSI 209 (286)
Q Consensus 131 ~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~-G~~Ii~vTgR~e~~r~~ 209 (286)
..++.+++||.||||.+-.++ ...++|.++++++|++|.++ ...++++|||+ ...
T Consensus 15 ~a~~~~~~lDyDGTl~~i~~~---------------------p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~---~~~ 70 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIVPH---------------------PEAAVPDDRLLSLLQDLASDPRNVVAIISGRS---LAE 70 (266)
T ss_pred cccceEEEEeccccccccccC---------------------ccccCCCHHHHHHHHHHHhcCCCeEEEEeCCC---HHH
Confidence 456789999999999865432 11478899999999999988 34799999999 444
Q ss_pred HHHHHH
Q 023192 210 TVDNLI 215 (286)
Q Consensus 210 T~~~L~ 215 (286)
..+|+.
T Consensus 71 l~~~~~ 76 (266)
T COG1877 71 LERLFG 76 (266)
T ss_pred HHHhcC
Confidence 555555
No 170
>PLN02580 trehalose-phosphatase
Probab=96.53 E-value=0.0067 Score=58.69 Aligned_cols=62 Identities=23% Similarity=0.212 Sum_probs=46.2
Q ss_pred cCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHH
Q 023192 130 RGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSI 209 (286)
Q Consensus 130 ~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~ 209 (286)
...++-+++||.||||..-.+ ++ ..+.+-+++.+.++.|.+. .+++|||||+ +..
T Consensus 115 ~~~k~~~LfLDyDGTLaPIv~------------~P---------d~A~~s~~~~~aL~~La~~-~~VAIVSGR~---~~~ 169 (384)
T PLN02580 115 AKGKKIALFLDYDGTLSPIVD------------DP---------DRALMSDAMRSAVKNVAKY-FPTAIISGRS---RDK 169 (384)
T ss_pred hhcCCeEEEEecCCccCCCCC------------Cc---------ccccCCHHHHHHHHHHhhC-CCEEEEeCCC---HHH
Confidence 344567889999999984211 11 1467778999999999888 5899999998 666
Q ss_pred HHHHHHh
Q 023192 210 TVDNLIN 216 (286)
Q Consensus 210 T~~~L~~ 216 (286)
..+++.-
T Consensus 170 L~~~l~~ 176 (384)
T PLN02580 170 VYELVGL 176 (384)
T ss_pred HHHHhCC
Confidence 6777754
No 171
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=96.53 E-value=0.014 Score=60.39 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=61.1
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
.+++.|++.+.+++|++.|++++++||.. .......-++.|+.. .+-+ -+ |+-|....+++++.|.
T Consensus 444 ~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~---~~ta~~iA~~lGI~~---v~a~-----~~--PedK~~~v~~lq~~g~- 509 (675)
T TIGR01497 444 KDIVKGGIKERFAQLRKMGIKTIMITGDN---RLTAAAIAAEAGVDD---FIAE-----AT--PEDKIALIRQEQAEGK- 509 (675)
T ss_pred cccchhHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHcCCCE---EEcC-----CC--HHHHHHHHHHHHHcCC-
Confidence 57999999999999999999999999987 345556667789963 2322 12 2446777777776654
Q ss_pred EEEEEcCChhhhcc
Q 023192 255 ILGNSGDQWSDLLG 268 (286)
Q Consensus 255 i~~~IGDq~sDl~g 268 (286)
+++++||..+|..+
T Consensus 510 ~VamvGDG~NDapA 523 (675)
T TIGR01497 510 LVAMTGDGTNDAPA 523 (675)
T ss_pred eEEEECCCcchHHH
Confidence 78999999999865
No 172
>PLN02382 probable sucrose-phosphatase
Probab=96.44 E-value=0.011 Score=57.74 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=41.0
Q ss_pred CCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHH
Q 023192 131 GDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSIT 210 (286)
Q Consensus 131 ~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T 210 (286)
+..+-.|+.|+||||+++.. . .....+....+++++.++|+.++++|||+. ...
T Consensus 6 ~~~~~lI~sDLDGTLL~~~~--------~---------------~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~---~~~ 59 (413)
T PLN02382 6 GSPRLMIVSDLDHTMVDHHD--------P---------------ENLSLLRFNALWEAEYRHDSLLVFSTGRSP---TLY 59 (413)
T ss_pred CCCCEEEEEcCCCcCcCCCC--------c---------------cchhHHHHHHHHHHhhcCCeeEEEEcCCCH---HHH
Confidence 34456788899999996410 0 011122334455678899999999999983 344
Q ss_pred HHHHHhcCCCC
Q 023192 211 VDNLINAGVRY 221 (286)
Q Consensus 211 ~~~L~~~Gi~~ 221 (286)
.+.++..+++.
T Consensus 60 ~~l~~~~~l~~ 70 (413)
T PLN02382 60 KELRKEKPLLT 70 (413)
T ss_pred HHHHHhCCCCC
Confidence 55555555543
No 173
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=96.42 E-value=0.016 Score=47.97 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=60.2
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
....++.+.+.++.|++. ++|++.||-. .....+.++-.|++. +.++ ... ++.-|..+..+|.+. |.
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgDr---~gsl~~lae~~gi~~-~rv~-a~a------~~e~K~~ii~eLkk~-~~ 94 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGDR---KGSLVQLAEFVGIPV-ERVF-AGA------DPEMKAKIIRELKKR-YE 94 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCCc---chHHHHHHHHcCCce-eeee-ccc------CHHHHHHHHHHhcCC-Cc
Confidence 457888999999999999 9999999976 344556666679873 3322 222 235577888888764 67
Q ss_pred EEEEEcCChhhhcc
Q 023192 255 ILGNSGDQWSDLLG 268 (286)
Q Consensus 255 i~~~IGDq~sDl~g 268 (286)
.+++|||-.+|+..
T Consensus 95 k~vmVGnGaND~la 108 (152)
T COG4087 95 KVVMVGNGANDILA 108 (152)
T ss_pred EEEEecCCcchHHH
Confidence 88899999999765
No 174
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=96.40 E-value=0.019 Score=59.48 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=60.6
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
.+++.|++.+.+++|++.|++++.+||-.+ .....--++.|+.. ++-+ - .|+-|..+-++++++| +
T Consensus 439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~---~TA~aIA~elGI~~---v~A~-----~--~PedK~~iV~~lQ~~G-~ 504 (673)
T PRK14010 439 KDVIKDGLVERFRELREMGIETVMCTGDNE---LTAATIAKEAGVDR---FVAE-----C--KPEDKINVIREEQAKG-H 504 (673)
T ss_pred ecCCcHHHHHHHHHHHHCCCeEEEECCCCH---HHHHHHHHHcCCce---EEcC-----C--CHHHHHHHHHHHHhCC-C
Confidence 579999999999999999999999999874 33344446679963 2222 1 2345778888888776 5
Q ss_pred EEEEEcCChhhhcc
Q 023192 255 ILGNSGDQWSDLLG 268 (286)
Q Consensus 255 i~~~IGDq~sDl~g 268 (286)
+++++||-.||--+
T Consensus 505 ~VaMtGDGvNDAPA 518 (673)
T PRK14010 505 IVAMTGDGTNDAPA 518 (673)
T ss_pred EEEEECCChhhHHH
Confidence 78899999999744
No 175
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.36 E-value=0.013 Score=63.01 Aligned_cols=90 Identities=14% Similarity=0.146 Sum_probs=62.7
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCC-----------------CchH
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDH-----------------GKLA 237 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~-----------------~Kp~ 237 (286)
.+++.|++.+.+++|++.|++++++||... .....--++.|+..-+..++.+..-. ..-.
T Consensus 577 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~~---~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~s 653 (941)
T TIGR01517 577 KDPLRPGVREAVQECQRAGITVRMVTGDNI---DTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSS 653 (941)
T ss_pred cCCCchhHHHHHHHHHHCCCEEEEECCCCh---HHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECC
Confidence 579999999999999999999999999973 33333345678853222222211100 0113
Q ss_pred HHhHHHHHHhHhhcCCeEEEEEcCChhhhcc
Q 023192 238 IIYKSEKRNEMVQEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 238 ~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g 268 (286)
|.-|..+-+.+++.|+ +++++||-.+|.-+
T Consensus 654 Pe~K~~iV~~lq~~g~-vVam~GDGvNDapA 683 (941)
T TIGR01517 654 PLDKQLLVLMLKDMGE-VVAVTGDGTNDAPA 683 (941)
T ss_pred HHHHHHHHHHHHHCCC-EEEEECCCCchHHH
Confidence 4558888888988887 78999999999855
No 176
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.30 E-value=0.023 Score=61.42 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=63.0
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc------------------------eEEEcCC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD------------------------KLILRSS 230 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~------------------------~Lilr~~ 230 (286)
.+|+.|++.+.+++++++|++++++|||.. ..+....++.|+-.-. .+++.+.
T Consensus 566 ~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~---~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~ 642 (997)
T TIGR01106 566 IDPPRAAVPDAVGKCRSAGIKVIMVTGDHP---ITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS 642 (997)
T ss_pred cCCChHHHHHHHHHHHHCCCeEEEECCCCH---HHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhH
Confidence 579999999999999999999999999984 3445555667773110 1222221
Q ss_pred CCC-------------------CchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhcc
Q 023192 231 DDH-------------------GKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 231 ~~~-------------------~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g 268 (286)
.-. ..-.|.-|..+-+.+++.|+ +++++||..+|..+
T Consensus 643 ~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~-vv~~~GDG~ND~pa 698 (997)
T TIGR01106 643 DLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGA-IVAVTGDGVNDSPA 698 (997)
T ss_pred HhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCC-EEEEECCCcccHHH
Confidence 100 01123457788888888887 78999999999755
No 177
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.28 E-value=0.0087 Score=63.54 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=44.9
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHH-HHCCCeEEEEcCCchhhHHHHH
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEV-LGLGFKIFLLTGRSEKQRSITV 211 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~L-k~~G~~Ii~vTgR~e~~r~~T~ 211 (286)
.+.++++|+||||+...+. ...|-|++.++|++| ++.|..++++|||+ +....
T Consensus 595 ~~rlI~LDyDGTLlp~~~~-----------------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~---~~~L~ 648 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASI-----------------------DKSPSSKSIDILNTLCRDKNNMVFIVSARS---RKTLA 648 (854)
T ss_pred cCeEEEEecCCcccCCccc-----------------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCC---HHHHH
Confidence 4679999999999954210 234568899999997 77899999999998 66667
Q ss_pred HHHHh
Q 023192 212 DNLIN 216 (286)
Q Consensus 212 ~~L~~ 216 (286)
+|+..
T Consensus 649 ~~f~~ 653 (854)
T PLN02205 649 DWFSP 653 (854)
T ss_pred HHhCC
Confidence 77743
No 178
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=96.24 E-value=0.016 Score=60.87 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=62.0
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc----ceEEEcCCC-----------------CC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW----DKLILRSSD-----------------DH 233 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~----~~Lilr~~~-----------------~~ 233 (286)
.+|+.|++.+.+++|++.|++++++||... ..+...-++.|+..- +.+ ..+.. -.
T Consensus 440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~---~tA~~IA~~lGI~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~vf 515 (755)
T TIGR01647 440 FDPPRHDTKETIERARHLGVEVKMVTGDHL---AIAKETARRLGLGTNIYTADVL-LKGDNRDDLPSGELGEMVEDADGF 515 (755)
T ss_pred cCCChhhHHHHHHHHHHCCCeEEEECCCCH---HHHHHHHHHcCCCCCCcCHHHh-cCCcchhhCCHHHHHHHHHhCCEE
Confidence 468999999999999999999999999984 444555567798631 001 00000 00
Q ss_pred CchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhcc
Q 023192 234 GKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 234 ~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g 268 (286)
..-.|.-|..+-+.+++.|+ +++++||-.||.-+
T Consensus 516 Ar~~Pe~K~~iV~~lq~~G~-~VamvGDGvNDapA 549 (755)
T TIGR01647 516 AEVFPEHKYEIVEILQKRGH-LVGMTGDGVNDAPA 549 (755)
T ss_pred EecCHHHHHHHHHHHHhcCC-EEEEEcCCcccHHH
Confidence 11124558888888888875 78899999999754
No 179
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.14 E-value=0.012 Score=52.75 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=39.2
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
+..|..||||||+.. .|++. ++...+.+|++.|++|+++|+++ +...+..
T Consensus 7 ~~lIFtDlD~TLl~~------------~ye~~---------------pA~pv~~el~d~G~~Vi~~SSKT---~aE~~~l 56 (274)
T COG3769 7 PLLIFTDLDGTLLPH------------SYEWQ---------------PAAPVLLELKDAGVPVILCSSKT---RAEMLYL 56 (274)
T ss_pred ceEEEEcccCcccCC------------CCCCC---------------ccchHHHHHHHcCCeEEEeccch---HHHHHHH
Confidence 346778999999962 12211 34556778999999999999998 4444444
Q ss_pred HHhcCCC
Q 023192 214 LINAGVR 220 (286)
Q Consensus 214 L~~~Gi~ 220 (286)
=+.+|.+
T Consensus 57 ~~~l~v~ 63 (274)
T COG3769 57 QKSLGVQ 63 (274)
T ss_pred HHhcCCC
Confidence 4556666
No 180
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=96.07 E-value=0.033 Score=57.76 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=60.2
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
.+++.|++.+.+++|++.|++++.+||-.. ......-++.|++. .+-+- .|+-|..+-+++++.| +
T Consensus 443 ~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~---~TA~aIA~elGId~---v~A~~-------~PedK~~iV~~lQ~~G-~ 508 (679)
T PRK01122 443 KDIVKPGIKERFAELRKMGIKTVMITGDNP---LTAAAIAAEAGVDD---FLAEA-------TPEDKLALIRQEQAEG-R 508 (679)
T ss_pred eccCchhHHHHHHHHHHCCCeEEEECCCCH---HHHHHHHHHcCCcE---EEccC-------CHHHHHHHHHHHHHcC-C
Confidence 568899999999999999999999999873 34444456779963 22221 2345777788888776 5
Q ss_pred EEEEEcCChhhhcc
Q 023192 255 ILGNSGDQWSDLLG 268 (286)
Q Consensus 255 i~~~IGDq~sDl~g 268 (286)
+++++||-.||--+
T Consensus 509 ~VaMtGDGvNDAPA 522 (679)
T PRK01122 509 LVAMTGDGTNDAPA 522 (679)
T ss_pred eEEEECCCcchHHH
Confidence 78899999999644
No 181
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=96.04 E-value=0.032 Score=59.78 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=62.6
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcce----EEEcCCC-C------------C----
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK----LILRSSD-D------------H---- 233 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~----Lilr~~~-~------------~---- 233 (286)
.+|+.|++.+.++.|++.|++++++||.. ...+....++.|+..-+. ..+.+.. + +
T Consensus 535 ~Dplr~~v~e~I~~l~~aGI~v~miTGD~---~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ 611 (917)
T TIGR01116 535 LDPPRPEVADAIEKCRTAGIRVIMITGDN---KETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLF 611 (917)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEecCCC---HHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEE
Confidence 57999999999999999999999999997 345556667778853111 1111100 0 0
Q ss_pred CchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCC
Q 023192 234 GKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSP 270 (286)
Q Consensus 234 ~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~ 270 (286)
....+.-|..+-+.+++.|+ +++++||..+|..+-+
T Consensus 612 ar~~P~~K~~iV~~lq~~g~-~va~iGDG~ND~~alk 647 (917)
T TIGR01116 612 SRVEPSHKSELVELLQEQGE-IVAMTGDGVNDAPALK 647 (917)
T ss_pred EecCHHHHHHHHHHHHhcCC-eEEEecCCcchHHHHH
Confidence 01123446777777776664 6788999999997643
No 182
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.01 E-value=0.017 Score=50.85 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=49.9
Q ss_pred hhhccCCCccEEEEecCCCccCCc-hhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 126 SVELRGDGKDAWIFDIDETLLSNL-PYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 126 ~~~~~~~~~~avVfDIDgTLl~n~-~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
.+.+...|++.+|+|+||||++.. +. + ...--..|++.+||+.+.+ .+.|++-|+...
T Consensus 13 ~~~~~~~~kklLVLDLDeTLvh~~~~~------------~--------~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~ 71 (195)
T TIGR02245 13 LLNPPREGKKLLVLDIDYTLFDHRSPA------------E--------TGEELMRPYLHEFLTSAYE-DYDIVIWSATSM 71 (195)
T ss_pred ccCCCCCCCcEEEEeCCCceEcccccC------------C--------CceEEeCCCHHHHHHHHHh-CCEEEEEecCCH
Confidence 344556788999999999999641 10 0 1123567999999999977 799999999985
Q ss_pred hhHHHHHHHHHhcCC
Q 023192 205 KQRSITVDNLINAGV 219 (286)
Q Consensus 205 ~~r~~T~~~L~~~Gi 219 (286)
.+ ....+...|+
T Consensus 72 ~y---a~~~l~~l~~ 83 (195)
T TIGR02245 72 KW---IEIKMTELGV 83 (195)
T ss_pred HH---HHHHHHHhcc
Confidence 54 4445555554
No 183
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=95.99 E-value=0.0029 Score=58.19 Aligned_cols=97 Identities=14% Similarity=0.023 Sum_probs=55.1
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEE----cCCCCCCchHHHhHHHHHHhHhhcCC
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLIL----RSSDDHGKLAIIYKSEKRNEMVQEGY 253 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lil----r~~~~~~Kp~~~yKs~~r~~L~~~Gy 253 (286)
.++++.++++.|+++|. ++++||++.... ...-+...|...+...+. +.....+||.+..-....+.+. ...
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~--~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~-~~~ 219 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHP--LSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFS-IDP 219 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCC--CcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhC-CCh
Confidence 36789999999998897 789999885321 011111223222211111 1222346777643222222221 113
Q ss_pred eEEEEEcCCh-hhhccC-CCCCcEEEe
Q 023192 254 RILGNSGDQW-SDLLGS-PMPSRSFKL 278 (286)
Q Consensus 254 ~i~~~IGDq~-sDl~ga-~~g~r~fkL 278 (286)
+.+++|||+. +|+.+| ++|.+++.+
T Consensus 220 ~~~lmIGD~~~tDI~~A~~aGi~si~V 246 (279)
T TIGR01452 220 ARTLMVGDRLETDILFGHRCGMTTVLV 246 (279)
T ss_pred hhEEEECCChHHHHHHHHHcCCcEEEE
Confidence 4689999995 999998 468777655
No 184
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=95.90 E-value=0.013 Score=53.23 Aligned_cols=62 Identities=21% Similarity=0.134 Sum_probs=39.1
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
+..++.|+|||+++.. ........++++...+.++.++++|||+ ...+.+.
T Consensus 2 ~~ll~sDlD~Tl~~~~--------------------------~~~~~~l~~~l~~~~~~~~~~v~~TGRs---~~~~~~~ 52 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGD--------------------------DEALARLEELLEQQARPEILFVYVTGRS---LESVLRL 52 (247)
T ss_dssp SEEEEEETBTTTBHCH--------------------------HHHHHHHHHHHHHHHCCGEEEEEE-SS----HHHHHHH
T ss_pred CEEEEEECCCCCcCCC--------------------------HHHHHHHHHHHHHhhCCCceEEEECCCC---HHHHHHH
Confidence 3578999999998211 1122334445554557789999999999 5667778
Q ss_pred HHhcCCCCcce
Q 023192 214 LINAGVRYWDK 224 (286)
Q Consensus 214 L~~~Gi~~~~~ 224 (286)
+++.+++..+.
T Consensus 53 ~~~~~l~~Pd~ 63 (247)
T PF05116_consen 53 LREYNLPQPDY 63 (247)
T ss_dssp HHHCT-EE-SE
T ss_pred HHhCCCCCCCE
Confidence 88888875443
No 185
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=95.85 E-value=0.05 Score=58.04 Aligned_cols=89 Identities=20% Similarity=0.309 Sum_probs=62.4
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCC----------------CchHH
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDH----------------GKLAI 238 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~----------------~Kp~~ 238 (286)
.+|+.|++.+.+++|++.|++++++||-.. ..+...-++.|+.. ...+...+-+. ..-.|
T Consensus 513 ~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~---~tA~aIA~~lGI~~-~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~P 588 (867)
T TIGR01524 513 LDPPKESTKEAIAALFKNGINVKVLTGDNE---IVTARICQEVGIDA-NDFLLGADIEELSDEELARELRKYHIFARLTP 588 (867)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHcCCCC-CCeeecHhhhhCCHHHHHHHhhhCeEEEECCH
Confidence 579999999999999999999999999873 33444456779862 12221111000 01123
Q ss_pred HhHHHHHHhHhhcCCeEEEEEcCChhhhcc
Q 023192 239 IYKSEKRNEMVQEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 239 ~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g 268 (286)
.-|..+-+.+++.|+ +++++||..+|.-+
T Consensus 589 e~K~~iV~~lq~~G~-vVam~GDGvNDapA 617 (867)
T TIGR01524 589 MQKSRIIGLLKKAGH-TVGFLGDGINDAPA 617 (867)
T ss_pred HHHHHHHHHHHhCCC-EEEEECCCcccHHH
Confidence 457888888888875 78899999999755
No 186
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=95.76 E-value=0.03 Score=59.96 Aligned_cols=89 Identities=20% Similarity=0.313 Sum_probs=62.7
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCC----------------CCchHH
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDD----------------HGKLAI 238 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~----------------~~Kp~~ 238 (286)
.+|+.|++.+.+++|++.|+++.++||-.+ ..+...-++.|+.. +..+...+-+ ...-.|
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~---~tA~~IA~~lGI~~-~~v~~G~el~~l~~~el~~~~~~~~VfAr~sP 623 (902)
T PRK10517 548 LDPPKETTAPALKALKASGVTVKILTGDSE---LVAAKVCHEVGLDA-GEVLIGSDIETLSDDELANLAERTTLFARLTP 623 (902)
T ss_pred hCcchhhHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHcCCCc-cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCH
Confidence 589999999999999999999999999873 34445557779852 2222111100 011124
Q ss_pred HhHHHHHHhHhhcCCeEEEEEcCChhhhcc
Q 023192 239 IYKSEKRNEMVQEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 239 ~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g 268 (286)
.-|..+-+.+++.|+ +++++||-.||.-+
T Consensus 624 e~K~~IV~~Lq~~G~-vVam~GDGvNDaPA 652 (902)
T PRK10517 624 MHKERIVTLLKREGH-VVGFMGDGINDAPA 652 (902)
T ss_pred HHHHHHHHHHHHCCC-EEEEECCCcchHHH
Confidence 558888888888774 78899999999755
No 187
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=95.74 E-value=0.031 Score=52.62 Aligned_cols=61 Identities=21% Similarity=0.203 Sum_probs=44.7
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHC----CCeEEEEcCCchhh-H
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGL----GFKIFLLTGRSEKQ-R 207 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~----G~~Ii~vTgR~e~~-r 207 (286)
..=++.|||||+|+- +..++|++.+.++.|.+. .++.+|+||-.-.. +
T Consensus 34 ~~fgfafDIDGVL~R---------------------------G~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~ 86 (389)
T KOG1618|consen 34 PTFGFAFDIDGVLFR---------------------------GHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILES 86 (389)
T ss_pred CceeEEEecccEEEe---------------------------cCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchh
Confidence 345899999999972 467999999999999887 79999999975433 2
Q ss_pred HHHHHHHHhcCCC
Q 023192 208 SITVDNLINAGVR 220 (286)
Q Consensus 208 ~~T~~~L~~~Gi~ 220 (286)
..+.+.=..+|+.
T Consensus 87 ~rA~~lS~~Lgv~ 99 (389)
T KOG1618|consen 87 SRAQELSALLGVE 99 (389)
T ss_pred hHHHHHHHhhCCc
Confidence 3333333445775
No 188
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=95.70 E-value=0.038 Score=60.10 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=62.4
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc----------ceEEEcCCCCC-----------
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW----------DKLILRSSDDH----------- 233 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~----------~~Lilr~~~~~----------- 233 (286)
.+++.|++.+.++.|++.|++++++||... ..+...-++.|+..- +..++.+..-.
T Consensus 644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~---~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~ 720 (1053)
T TIGR01523 644 YDPPRNESAGAVEKCHQAGINVHMLTGDFP---ETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLK 720 (1053)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCH---HHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHh
Confidence 579999999999999999999999999984 344455567788421 11222221100
Q ss_pred ------CchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhcc
Q 023192 234 ------GKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 234 ------~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g 268 (286)
..-.|.-|..+-+.+++.|+ +++++||..+|..+
T Consensus 721 ~~~~V~ar~sP~~K~~iV~~lq~~g~-~Vam~GDGvNDapa 760 (1053)
T TIGR01523 721 ALCLVIARCAPQTKVKMIEALHRRKA-FCAMTGDGVNDSPS 760 (1053)
T ss_pred hcCeEEEecCHHHHHHHHHHHHhcCC-eeEEeCCCcchHHH
Confidence 01124457888888888776 67889999999754
No 189
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.66 E-value=0.0037 Score=57.03 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCC----CCCchHHHhHHHHHHhHhhcCCe
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSD----DHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~----~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
++++.+.++.|++.|.+++++||++.... ...+...|...+...+....+ ..+||.+..-....+.+. ..-+
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~~~---~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~-~~~~ 197 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRYYK---RKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATG-CEPE 197 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCc---CCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhC-CChh
Confidence 46777888889999999999999875431 122223333322211111111 125766532222222221 1134
Q ss_pred EEEEEcCCh-hhhccCC-CCCcEEEecC
Q 023192 255 ILGNSGDQW-SDLLGSP-MPSRSFKLPN 280 (286)
Q Consensus 255 i~~~IGDq~-sDl~ga~-~g~r~fkLPN 280 (286)
.+++|||+. +|+.+|+ +|.+++.+..
T Consensus 198 ~~~~vGD~~~~Di~~a~~~G~~~i~v~~ 225 (257)
T TIGR01458 198 EAVMIGDDCRDDVGGAQDCGMRGIQVRT 225 (257)
T ss_pred hEEEECCCcHHHHHHHHHcCCeEEEECC
Confidence 689999995 9999884 6888776643
No 190
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=95.62 E-value=0.067 Score=57.32 Aligned_cols=89 Identities=20% Similarity=0.254 Sum_probs=62.1
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCC----------------CCchHH
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDD----------------HGKLAI 238 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~----------------~~Kp~~ 238 (286)
.+|+.|++.+.+++|++.|++++++||-.. ..+...-++.|+.. +..+...+-+ ...-.|
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~---~tA~aIA~~lGI~~-~~vi~G~el~~~~~~el~~~v~~~~VfAr~sP 623 (903)
T PRK15122 548 LDPPKESAAPAIAALRENGVAVKVLTGDNP---IVTAKICREVGLEP-GEPLLGTEIEAMDDAALAREVEERTVFAKLTP 623 (903)
T ss_pred cCccHHHHHHHHHHHHHCCCeEEEECCCCH---HHHHHHHHHcCCCC-CCccchHhhhhCCHHHHHHHhhhCCEEEEeCH
Confidence 579999999999999999999999999873 34444456679852 1111111000 001134
Q ss_pred HhHHHHHHhHhhcCCeEEEEEcCChhhhcc
Q 023192 239 IYKSEKRNEMVQEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 239 ~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g 268 (286)
.-|..+-+.+++.|+ +++++||-.||.-+
T Consensus 624 e~K~~iV~~Lq~~G~-vVamtGDGvNDaPA 652 (903)
T PRK15122 624 LQKSRVLKALQANGH-TVGFLGDGINDAPA 652 (903)
T ss_pred HHHHHHHHHHHhCCC-EEEEECCCchhHHH
Confidence 558888888988774 78899999999754
No 191
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=95.57 E-value=0.036 Score=50.80 Aligned_cols=127 Identities=21% Similarity=0.166 Sum_probs=81.5
Q ss_pred CccEEEEecCCCccCCc--hhhhhhcCCCccCCHHHHHHHHHhcCCc-----ccHHHHHHHHHHHHC------CCeEEEE
Q 023192 133 GKDAWIFDIDETLLSNL--PYYQEHGYGLEIFNPVEFDKWVEKAMSP-----AIEASLKLYEEVLGL------GFKIFLL 199 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~--~~~~~~~~g~~~f~~~~~~~wv~~~~~~-----~~pgv~ell~~Lk~~------G~~Ii~v 199 (286)
..--|.||-|++|.+-. ..|++.+ -+.|.+........ |+..-++-|.+++++ =+++++|
T Consensus 120 ~qlRIAFDgDaVLfsDesE~vy~~~G-------L~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalV 192 (264)
T PF06189_consen 120 DQLRIAFDGDAVLFSDESERVYQEQG-------LEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALV 192 (264)
T ss_pred CceEEEEcCCeEeecCcchHhHHhcc-------HHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 33479999999999653 2333322 12333333332222 334445555556544 3689999
Q ss_pred cCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhccCCCCCcEEEec
Q 023192 200 TGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSPMPSRSFKLP 279 (286)
Q Consensus 200 TgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~ga~~g~r~fkLP 279 (286)
|.|+.....-..+-|+.-|+..-+.++|.+.. |..+.+.+.. -++++||..=+.++..+..+-.+|
T Consensus 193 TAR~apah~RvI~TLr~Wgv~vDEafFLgG~~---------K~~vL~~~~p-----hIFFDDQ~~H~~~a~~~vps~hVP 258 (264)
T PF06189_consen 193 TARSAPAHERVIRTLRSWGVRVDEAFFLGGLP---------KGPVLKAFRP-----HIFFDDQDGHLESASKVVPSGHVP 258 (264)
T ss_pred EcCCCchhHHHHHHHHHcCCcHhHHHHhCCCc---------hhHHHHhhCC-----CEeecCchhhhhHhhcCCCEEecc
Confidence 99987666778889999999744456666543 4555555543 567999999999987677777776
Q ss_pred C
Q 023192 280 N 280 (286)
Q Consensus 280 N 280 (286)
-
T Consensus 259 ~ 259 (264)
T PF06189_consen 259 Y 259 (264)
T ss_pred C
Confidence 4
No 192
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=95.09 E-value=0.033 Score=49.78 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=26.5
Q ss_pred EEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCC-CeEEEEcCCc
Q 023192 138 IFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLG-FKIFLLTGRS 203 (286)
Q Consensus 138 VfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G-~~Ii~vTgR~ 203 (286)
+||.||||..-.+- ...+.+.+++.++|+.|.+.. ..++++|||+
T Consensus 1 ~lDyDGTL~p~~~~---------------------p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~ 46 (235)
T PF02358_consen 1 FLDYDGTLAPIVDD---------------------PDAAVPPPELRELLRALAADPNNTVAIVSGRS 46 (235)
T ss_dssp EEE-TTTSS---S----------------------GGG----HHHHHHHHHHHHHSE--EEEE-SS-
T ss_pred CcccCCccCCCCCC---------------------ccccCCCHHHHHHHHHHhccCCCEEEEEEeCC
Confidence 58999999843210 124678899999999998764 4799999998
No 193
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=94.87 E-value=0.1 Score=55.05 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=71.1
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITV 211 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~ 211 (286)
.|.-++.+-+||++.-- | .-.+++.|++...+..|++.|++++++||-.. ....
T Consensus 701 ~g~tvv~v~vn~~l~gv-------------~----------~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~---~aA~ 754 (951)
T KOG0207|consen 701 KGQTVVYVAVNGQLVGV-------------F----------ALEDQVRPDAALAVAELKSMGIKVVMLTGDND---AAAR 754 (951)
T ss_pred cCceEEEEEECCEEEEE-------------E----------EeccccchhHHHHHHHHHhcCceEEEEcCCCH---HHHH
Confidence 45667888888888621 1 12478999999999999999999999999873 3444
Q ss_pred HHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhcc
Q 023192 212 DNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 212 ~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g 268 (286)
..-++.|+. .++- .. +| .-|.+.-++|+++| ..+++|||-.||--+
T Consensus 755 svA~~VGi~---~V~a-ev----~P--~~K~~~Ik~lq~~~-~~VaMVGDGINDaPA 800 (951)
T KOG0207|consen 755 SVAQQVGID---NVYA-EV----LP--EQKAEKIKEIQKNG-GPVAMVGDGINDAPA 800 (951)
T ss_pred HHHHhhCcc---eEEe-cc----Cc--hhhHHHHHHHHhcC-CcEEEEeCCCCccHH
Confidence 444566864 3321 11 22 23678888888776 678899999998643
No 194
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=94.63 E-value=0.15 Score=53.52 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=64.6
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcce----EEEcCCC-CC----------------
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK----LILRSSD-DH---------------- 233 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~----Lilr~~~-~~---------------- 233 (286)
.+||.|++.+.++.+++.|++|+.+||-.. ...+..-++.|+...+. -.+.+.. +.
T Consensus 582 ~DPPR~ev~~ai~~c~~aGIrV~mITGD~~---~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vF 658 (972)
T KOG0202|consen 582 LDPPRPEVADAIELCRQAGIRVIMITGDNK---ETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVF 658 (972)
T ss_pred cCCCchhHHHHHHHHHHcCCEEEEEcCCCH---HHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEE
Confidence 589999999999999999999999999984 34444556778865433 2222211 10
Q ss_pred CchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhcc
Q 023192 234 GKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 234 ~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g 268 (286)
..-.|..|..+-+.|++.| +++++-||-.+|--+
T Consensus 659 aR~~P~HK~kIVeaLq~~g-eivAMTGDGVNDApA 692 (972)
T KOG0202|consen 659 ARAEPQHKLKIVEALQSRG-EVVAMTGDGVNDAPA 692 (972)
T ss_pred EecCchhHHHHHHHHHhcC-CEEEecCCCccchhh
Confidence 0012456888888888765 799999999999755
No 195
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=94.54 E-value=0.19 Score=50.05 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=56.5
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
.+++.|++.+.++.|++.|++++++||..+....... ++.|+ +. + -.+..|...-+++++.|+
T Consensus 345 ~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia---~~lgi--~~----~-------~~p~~K~~~v~~l~~~g~- 407 (499)
T TIGR01494 345 EDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIA---KELGI--FA----R-------VTPEEKAALVEALQKKGR- 407 (499)
T ss_pred cCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH---HHcCc--ee----c-------cCHHHHHHHHHHHHHCCC-
Confidence 4788999999999999999999999999854333333 34465 10 0 124557777777777774
Q ss_pred EEEEEcCChhhhcc
Q 023192 255 ILGNSGDQWSDLLG 268 (286)
Q Consensus 255 i~~~IGDq~sDl~g 268 (286)
.++++||..+|..+
T Consensus 408 ~v~~vGDg~nD~~a 421 (499)
T TIGR01494 408 VVAMTGDGVNDAPA 421 (499)
T ss_pred EEEEECCChhhHHH
Confidence 57889999999855
No 196
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=94.36 E-value=0.091 Score=55.59 Aligned_cols=66 Identities=9% Similarity=-0.016 Sum_probs=47.5
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHC-CCeEEEEcCCchhhHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGL-GFKIFLLTGRSEKQRSIT 210 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~-G~~Ii~vTgR~e~~r~~T 210 (286)
.++.+++||.||||..-.+. +-+ .....+-|++.++|+.|.+. +-.|++||||+ ++..
T Consensus 505 a~~rll~LDyDGTL~~~~~~---------~~~---------p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~---~~~L 563 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNS---------QIK---------EMDLGLHPELKETLKALCSDPKTTVVVLSRSG---KDIL 563 (797)
T ss_pred ccCeEEEEecCccccCCCCC---------ccc---------cccCCCCHHHHHHHHHHHcCCCCEEEEEeCCC---HHHH
Confidence 34578999999999832110 000 01356778999999999765 78999999998 6778
Q ss_pred HHHHHhcC
Q 023192 211 VDNLINAG 218 (286)
Q Consensus 211 ~~~L~~~G 218 (286)
++||...+
T Consensus 564 ~~~~~~~~ 571 (797)
T PLN03063 564 DKNFGEYN 571 (797)
T ss_pred HHHhCCCC
Confidence 88886533
No 197
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=94.27 E-value=0.1 Score=55.91 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=48.8
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHC-CCeEEEEcCCchhhHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGL-GFKIFLLTGRSEKQRSIT 210 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~-G~~Ii~vTgR~e~~r~~T 210 (286)
.++.+++||.||||....+. ++..-.-+....+.+-|+++++|+.|.+. +..|+|||||+ ++..
T Consensus 589 a~~RLlfLDyDGTLap~~~~------------P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~---~~~L 653 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDT------------PGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSD---RSVL 653 (934)
T ss_pred ccceEEEEecCceeccCCCC------------cccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCC---HHHH
Confidence 34578999999999853211 00000000011345778999999999865 78999999999 6778
Q ss_pred HHHHHhcCC
Q 023192 211 VDNLINAGV 219 (286)
Q Consensus 211 ~~~L~~~Gi 219 (286)
.+||...++
T Consensus 654 e~~fg~~~L 662 (934)
T PLN03064 654 DENFGEFDM 662 (934)
T ss_pred HHHhCCCCc
Confidence 888866443
No 198
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=94.17 E-value=0.23 Score=53.40 Aligned_cols=90 Identities=17% Similarity=0.270 Sum_probs=63.9
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc--eEEEcCCCCC-----------------Cc
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD--KLILRSSDDH-----------------GK 235 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~--~Lilr~~~~~-----------------~K 235 (286)
.+||.+++.+.++.|++.|+++..+||-.. ..+...=++.|+..-. .+.+.+..-. ..
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~---~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfAR 621 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHV---ETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFAR 621 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCH---HHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEE
Confidence 689999999999999999999999999863 3333333566876432 2343332211 01
Q ss_pred hHHHhHHHHHHhHhhcCCeEEEEEcCChhhhcc
Q 023192 236 LAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 236 p~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g 268 (286)
-.|.-|..+-+.+++.|+ ++++.||-.||.-+
T Consensus 622 vsP~qK~~IV~~lq~~g~-vVamtGDGvNDapA 653 (917)
T COG0474 622 VSPEQKARIVEALQKSGH-VVAMTGDGVNDAPA 653 (917)
T ss_pred cCHHHHHHHHHHHHhCCC-EEEEeCCCchhHHH
Confidence 124558888899998874 78899999999855
No 199
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=93.97 E-value=0.47 Score=41.93 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=67.3
Q ss_pred HHHHHHHH-HHHCCCeEEEEcCCch-hhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhc--CCeEE
Q 023192 181 ASLKLYEE-VLGLGFKIFLLTGRSE-KQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQE--GYRIL 256 (286)
Q Consensus 181 gv~ell~~-Lk~~G~~Ii~vTgR~e-~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~--Gy~i~ 256 (286)
.++++.+. .++..--.+++|||+| ...+...+.|...|+. ++.++|++.+....+...||......|... ..+.+
T Consensus 58 ~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~-Fd~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~~~~eI 136 (197)
T PF10307_consen 58 NIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGLE-FDAVCLKPENQRFSSTMDFKQAFLEDLLHTYKNAEEI 136 (197)
T ss_pred HHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCC-ccEEEeCcccccCccccHHHHHHHHHHHHhcCCCCEE
Confidence 67777764 4566777889999997 6688888889999997 899999998444556678999888888753 23467
Q ss_pred EEEcCChhhhcc
Q 023192 257 GNSGDQWSDLLG 268 (286)
Q Consensus 257 ~~IGDq~sDl~g 268 (286)
-+.+|+..=+.+
T Consensus 137 ~IYeDR~~hvk~ 148 (197)
T PF10307_consen 137 RIYEDRPKHVKG 148 (197)
T ss_pred EEEcCCHHHHHH
Confidence 788999876655
No 200
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=93.28 E-value=0.29 Score=42.89 Aligned_cols=98 Identities=8% Similarity=0.040 Sum_probs=54.9
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHH-----HHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHh
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITV-----DNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMV 249 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~-----~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~ 249 (286)
+++.+|.+.+.+++.+++|.++++-|+-+-...+-.- -.|..+ |.+|+.. ..+.++. ...|- .+...+-
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~l-fsGyfDt---tiG~KrE-~~SY~-kIa~~iG 174 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSL-FSGYFDT---TIGKKRE-SQSYA-KIAGDIG 174 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhh-hcceeec---ccccccc-chhHH-HHHHhcC
Confidence 5788999999999999999999998887632111100 001110 1122221 1111111 11121 1222221
Q ss_pred hcCCeEEEEEcCChhhhccCC-CCCcEEEec
Q 023192 250 QEGYRILGNSGDQWSDLLGSP-MPSRSFKLP 279 (286)
Q Consensus 250 ~~Gy~i~~~IGDq~sDl~ga~-~g~r~fkLP 279 (286)
..-..++++.|++..+.+|+ +|+++..+-
T Consensus 175 -l~p~eilFLSDn~~EL~AA~~vGl~t~l~~ 204 (229)
T COG4229 175 -LPPAEILFLSDNPEELKAAAGVGLATGLAV 204 (229)
T ss_pred -CCchheEEecCCHHHHHHHHhcchheeeee
Confidence 12346888999999998874 788877663
No 201
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=92.75 E-value=0.26 Score=47.64 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=50.5
Q ss_pred CCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchh-----
Q 023192 131 GDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEK----- 205 (286)
Q Consensus 131 ~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~----- 205 (286)
..+.+.+.||+|||+++|.+-- .|. -++.+| ....|.+..=++.|.+.|++++|-|+....
T Consensus 72 ~~~~K~i~FD~dgtlI~t~sg~---vf~---~~~~dw--------~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~ 137 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTKSGK---VFP---KGSMDW--------RILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKL 137 (422)
T ss_pred CCCcceEEEecCCceeecCCcc---eee---ccCccc--------eeeccccchhhhhhccCCeEEEEEecccccccCcc
Confidence 4566789999999999985411 011 112222 355667777788899999999999997532
Q ss_pred ----hHHHHHHHHHhcCCC
Q 023192 206 ----QRSITVDNLINAGVR 220 (286)
Q Consensus 206 ----~r~~T~~~L~~~Gi~ 220 (286)
.+........+.|+|
T Consensus 138 ~~~~f~~Ki~~i~anl~vP 156 (422)
T KOG2134|consen 138 ELEEFKKKIKAIVANLGVP 156 (422)
T ss_pred hHHHHHHHHHHHHHhcCCc
Confidence 233445556667887
No 202
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=92.69 E-value=1.4 Score=44.35 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=21.2
Q ss_pred HHHHCCCeEEEEcCCchhhHHHHHHHHHh-cCCC
Q 023192 188 EVLGLGFKIFLLTGRSEKQRSITVDNLIN-AGVR 220 (286)
Q Consensus 188 ~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~-~Gi~ 220 (286)
.++++|.. +++|+.+ +...+.++++ +|++
T Consensus 118 ~~~~~g~~-vvVSASp---~~~Vepfa~~~LGid 147 (497)
T PLN02177 118 VFNSFGKR-YIITASP---RIMVEPFVKTFLGAD 147 (497)
T ss_pred HHHhCCCE-EEEECCc---HHHHHHHHHHcCCCC
Confidence 34567754 9999998 5567778876 6886
No 203
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=92.66 E-value=0.61 Score=50.90 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=34.5
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
.+++.|++.+.++.|++.|++++++||.... .+..--++.|+-
T Consensus 654 ~d~lr~~~~~~I~~l~~agi~v~miTGD~~~---TA~~iA~~~gii 696 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRASIRTVMITGDNPL---TAVHVARECGIV 696 (1054)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEECCCCHH---HHHHHHHHcCCC
Confidence 5789999999999999999999999999843 333334566773
No 204
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=91.29 E-value=0.17 Score=36.98 Aligned_cols=46 Identities=11% Similarity=-0.037 Sum_probs=28.8
Q ss_pred CchHHHhHHHHHHhHhhcCCeEEEEEcCC-hhhhccCC-CCCcEEEecC
Q 023192 234 GKLAIIYKSEKRNEMVQEGYRILGNSGDQ-WSDLLGSP-MPSRSFKLPN 280 (286)
Q Consensus 234 ~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq-~sDl~ga~-~g~r~fkLPN 280 (286)
+||.+..-....+.+.- .-..+++|||+ .+|+.+|+ +|.+++.+..
T Consensus 3 gKP~p~~~~~a~~~~~~-~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~t 50 (75)
T PF13242_consen 3 GKPSPGMLEQALKRLGV-DPSRCVMVGDSLETDIEAAKAAGIDTILVLT 50 (75)
T ss_dssp STTSHHHHHHHHHHHTS-GGGGEEEEESSTTTHHHHHHHTTSEEEEESS
T ss_pred CCCcHHHHHHHHHHcCC-CHHHEEEEcCCcHhHHHHHHHcCCcEEEECC
Confidence 56665432222333311 12358899999 99999985 6888777654
No 205
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.77 E-value=1.8 Score=43.21 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=65.9
Q ss_pred cCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHH
Q 023192 130 RGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSI 209 (286)
Q Consensus 130 ~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~ 209 (286)
.+..+++.|+|+|+||.-.. ....|..+-... ..+..+++..-.++++.|+++|+-+++.|-+.+. .
T Consensus 218 ~g~~kK~LVLDLDNTLWGGV--IGedGv~GI~Ls--------~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~---d 284 (574)
T COG3882 218 SGKSKKALVLDLDNTLWGGV--IGEDGVDGIRLS--------NSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEK---D 284 (574)
T ss_pred hCcccceEEEecCCcccccc--cccccccceeec--------CCCCchhHHHHHHHHHHHHhccEEEEEecCCchh---h
Confidence 45668899999999997321 111111111111 1235678888899999999999999999988753 2
Q ss_pred HHHHHHhcCCCCcceEEEcCCC-------CCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhh
Q 023192 210 TVDNLINAGVRYWDKLILRSSD-------DHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDL 266 (286)
Q Consensus 210 T~~~L~~~Gi~~~~~Lilr~~~-------~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl 266 (286)
..+-++++ .+.+++.++ -..|..-.-| +-++| ..|-+-.++++|++.-.
T Consensus 285 a~evF~kh-----p~MiLkeedfa~~~iNW~~K~eNirk--IAkkl-Nlg~dSmvFiDD~p~Er 340 (574)
T COG3882 285 AKEVFRKH-----PDMILKEEDFAVFQINWDPKAENIRK--IAKKL-NLGLDSMVFIDDNPAER 340 (574)
T ss_pred HHHHHhhC-----CCeEeeHhhhhhheecCCcchhhHHH--HHHHh-CCCccceEEecCCHHHH
Confidence 33333333 223444332 1222111111 11222 23667788999998543
No 206
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=87.90 E-value=1.2 Score=39.95 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=50.3
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCch--hhHHHHHHHHHhcCCCC----cceE-EEcCCCCCCchHHHhHHHHHHhHhh
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSE--KQRSITVDNLINAGVRY----WDKL-ILRSSDDHGKLAIIYKSEKRNEMVQ 250 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e--~~r~~T~~~L~~~Gi~~----~~~L-ilr~~~~~~Kp~~~yKs~~r~~L~~ 250 (286)
.++++.++++.++..+..+.++|..++ ..+......++..|+.. +..+ ++.... .|+. +++.-++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~--~K~~-----~l~~l~~~ 210 (272)
T PRK10530 138 TFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGN--SKGK-----RLTQWVEA 210 (272)
T ss_pred ceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCC--ChHH-----HHHHHHHH
Confidence 355677777777776766666666442 22344444445555431 1111 222111 2332 23333333
Q ss_pred cCC--eEEEEEcCChhhhccCCCCCcEEEecC
Q 023192 251 EGY--RILGNSGDQWSDLLGSPMPSRSFKLPN 280 (286)
Q Consensus 251 ~Gy--~i~~~IGDq~sDl~ga~~g~r~fkLPN 280 (286)
.|. +.+++|||+.+|+.........+..-|
T Consensus 211 ~gi~~~e~i~~GD~~NDi~m~~~ag~~vamgn 242 (272)
T PRK10530 211 QGWSMKNVVAFGDNFNDISMLEAAGLGVAMGN 242 (272)
T ss_pred cCCCHHHeEEeCCChhhHHHHHhcCceEEecC
Confidence 343 368999999999988753334555444
No 207
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=87.51 E-value=0.87 Score=43.69 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchh
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEK 205 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~ 205 (286)
.|....++++|+++|.+++++||.|-.
T Consensus 242 ~~ql~~fl~kL~~~GKklFLiTNSPys 268 (510)
T KOG2470|consen 242 NPQLLAFLRKLKDHGKKLFLITNSPYS 268 (510)
T ss_pred cHHHHHHHHHHHHhcCcEEEEeCCchh
Confidence 467889999999999999999999954
No 208
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=86.90 E-value=0.27 Score=44.45 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=30.3
Q ss_pred CCCchHHHhHHHHHHhHhhcCCeEEEEEcCCh-hhhccCC-CCCcEEEecC
Q 023192 232 DHGKLAIIYKSEKRNEMVQEGYRILGNSGDQW-SDLLGSP-MPSRSFKLPN 280 (286)
Q Consensus 232 ~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~-sDl~ga~-~g~r~fkLPN 280 (286)
..+||.+..-....+.+. ...+.+++|||+. +|+.+|+ +|.+++.+..
T Consensus 175 ~~gKP~~~~~~~~~~~~~-~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~ 224 (249)
T TIGR01457 175 YIGKPNAIIMEKAVEHLG-TEREETLMVGDNYLTDIRAGIDAGIDTLLVHT 224 (249)
T ss_pred ccCCChHHHHHHHHHHcC-CCcccEEEECCCchhhHHHHHHcCCcEEEEcC
Confidence 346777643222333332 1235699999996 8999984 7888876643
No 209
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=86.14 E-value=1.6 Score=43.70 Aligned_cols=33 Identities=9% Similarity=-0.025 Sum_probs=26.5
Q ss_pred HHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh-cCCCC
Q 023192 185 LYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN-AGVRY 221 (286)
Q Consensus 185 ll~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~-~Gi~~ 221 (286)
.++..++.| +++++|..+ |-..+.|+++ +|.+.
T Consensus 101 ~~~~~~~~g-~~vVVTAsP---rvmVEpFake~LG~D~ 134 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMP---RVMVERFAKEHLRADE 134 (498)
T ss_pred HHHHHHcCC-eEEEEeCCH---HHHHHHHHHHhcCCce
Confidence 445566778 999999999 7788899999 78863
No 210
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=85.49 E-value=7.4 Score=33.32 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=53.7
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHC-C-CeEEEEcCCchh----h
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGL-G-FKIFLLTGRSEK----Q 206 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~-G-~~Ii~vTgR~e~----~ 206 (286)
+.+|+|||=|.++.- |++.+-| |.-+.-++++++. | ..|+++||.... .
T Consensus 42 ~ikavVlDKDNcit~-------------P~~~~Iw------------p~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~ 96 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITA-------------PYSLAIW------------PPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDH 96 (190)
T ss_pred CceEEEEcCCCeeeC-------------CcccccC------------chhHHHHHHHHHHhCcccEEEEecCcCccccCC
Confidence 688999999999972 2322211 2222223334332 3 678888876421 1
Q ss_pred HHHHHHHHH-hcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhc----CCeEEEEEcCCh-hhhccCC
Q 023192 207 RSITVDNLI-NAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQE----GYRILGNSGDQW-SDLLGSP 270 (286)
Q Consensus 207 r~~T~~~L~-~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~----Gy~i~~~IGDq~-sDl~ga~ 270 (286)
-..-.+.|+ +-|+| ++|... .||.- .+++...+-.. .-..+++|||+. +||.-|+
T Consensus 97 d~s~Ak~le~k~gIp-----VlRHs~--kKP~c--t~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN 157 (190)
T KOG2961|consen 97 DDSKAKALEAKIGIP-----VLRHSV--KKPAC--TAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYAN 157 (190)
T ss_pred chHHHHHHHHhhCCc-----eEeecc--cCCCc--cHHHHHHHhCCcccCChhHeEEEccchhhhHhhhh
Confidence 122233343 35887 444432 23322 11222222111 123688999998 8998775
No 211
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=84.89 E-value=0.15 Score=47.05 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=59.2
Q ss_pred ccCCCccEEEEecCCCccCCch---hhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchh
Q 023192 129 LRGDGKDAWIFDIDETLLSNLP---YYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEK 205 (286)
Q Consensus 129 ~~~~~~~avVfDIDgTLl~n~~---~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~ 205 (286)
....+++.+|+|+||||..++- ......|.- +-.++...-.-.....|++-+|+..+-+. +.+++.|+-.+.
T Consensus 84 ~~~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~----~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~ 158 (262)
T KOG1605|consen 84 LATVGRKTLVLDLDETLVHSSLNLKPIVNADFTV----PVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEV 158 (262)
T ss_pred cccCCCceEEEeCCCcccccccccCCCCCcceee----eeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHH
Confidence 4567899999999999886541 101111110 00001001112345678999999988665 899999999988
Q ss_pred hHHHHHHHHHh-cCCCCcceEEEcC
Q 023192 206 QRSITVDNLIN-AGVRYWDKLILRS 229 (286)
Q Consensus 206 ~r~~T~~~L~~-~Gi~~~~~Lilr~ 229 (286)
+.......|+. .|+- .+-+.|+
T Consensus 159 Ya~~v~D~LD~~~~i~--~~RlyR~ 181 (262)
T KOG1605|consen 159 YADPLLDILDPDRKII--SHRLYRD 181 (262)
T ss_pred HHHHHHHHccCCCCee--eeeeccc
Confidence 88888899986 5553 3444444
No 212
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=84.83 E-value=4.2 Score=31.96 Aligned_cols=72 Identities=19% Similarity=0.134 Sum_probs=48.6
Q ss_pred eEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCC--C--chHH-HhHHHHHHhHhh-cCCeEEEEEcCCh-hhhc
Q 023192 195 KIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDH--G--KLAI-IYKSEKRNEMVQ-EGYRILGNSGDQW-SDLL 267 (286)
Q Consensus 195 ~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~--~--Kp~~-~yKs~~r~~L~~-~Gy~i~~~IGDq~-sDl~ 267 (286)
++++||+.+........+.|+.+|+| ...+++|+-+.. + +... .+|.....++.+ -...-.+.|||+- .|..
T Consensus 1 pf~YvS~SPwnly~~l~~Fl~~~~~P-~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~Dpe 79 (100)
T PF09949_consen 1 PFFYVSNSPWNLYPFLRDFLRRNGFP-AGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGDSGQHDPE 79 (100)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhcCCC-CCceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEeeCCCcCHH
Confidence 47899999998889999999999999 456788876322 1 1122 366555555443 2344678899975 5643
No 213
>PLN02645 phosphoglycolate phosphatase
Probab=84.27 E-value=0.33 Score=45.42 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=27.7
Q ss_pred CchHHHhHHHHHHhHhhcCCeEEEEEcCCh-hhhccCC-CCCcEEEe
Q 023192 234 GKLAIIYKSEKRNEMVQEGYRILGNSGDQW-SDLLGSP-MPSRSFKL 278 (286)
Q Consensus 234 ~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~-sDl~ga~-~g~r~fkL 278 (286)
+||.+..-....+.+. ..-+.+++|||+. +|+.+|+ +|.+++.+
T Consensus 229 gKP~p~~~~~a~~~~~-~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV 274 (311)
T PLN02645 229 GKPSTFMMDYLANKFG-IEKSQICMVGDRLDTDILFGQNGGCKTLLV 274 (311)
T ss_pred CCChHHHHHHHHHHcC-CCcccEEEEcCCcHHHHHHHHHcCCCEEEE
Confidence 5776643222222221 1234689999997 9999984 67777765
No 214
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=81.45 E-value=4 Score=36.42 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=31.7
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCc
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRS 203 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~ 203 (286)
.--++||+||||.-. .....|.+.++++.|+++ +.|.+|-|.+
T Consensus 11 ~~l~lfdvdgtLt~~--------------------------r~~~~~e~~~~l~~lr~~-v~ig~VggsD 53 (252)
T KOG3189|consen 11 ETLCLFDVDGTLTPP--------------------------RQKVTPEMLEFLQKLRKK-VTIGFVGGSD 53 (252)
T ss_pred ceEEEEecCCccccc--------------------------cccCCHHHHHHHHHHhhh-eEEEEeecHH
Confidence 346889999999732 345667788888887665 7788887765
No 215
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=81.42 E-value=5.4 Score=34.72 Aligned_cols=26 Identities=15% Similarity=-0.044 Sum_probs=19.9
Q ss_pred eEEEEEcCChhhhccCCCCCcEEEec
Q 023192 254 RILGNSGDQWSDLLGSPMPSRSFKLP 279 (286)
Q Consensus 254 ~i~~~IGDq~sDl~ga~~g~r~fkLP 279 (286)
..+++|||+.+|+..-......|.+|
T Consensus 196 ~~vi~~GD~~NDi~ml~~ag~~va~~ 221 (221)
T TIGR02463 196 VKTLGLGDGPNDLPLLEVADYAVVIK 221 (221)
T ss_pred CcEEEECCCHHHHHHHHhCCceEEeC
Confidence 46899999999998875444566665
No 216
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=80.92 E-value=7.7 Score=42.52 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=27.6
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
.+++.+++.+.++.|++.|+++.++||-..
T Consensus 629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~~ 658 (1057)
T TIGR01652 629 EDKLQEGVPETIELLRQAGIKIWVLTGDKV 658 (1057)
T ss_pred hhhhhhccHHHHHHHHHCCCeEEEEcCCcH
Confidence 578999999999999999999999999763
No 217
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=80.41 E-value=4.3 Score=36.93 Aligned_cols=83 Identities=17% Similarity=0.003 Sum_probs=43.6
Q ss_pred HHHCCCeEEEE-cCCchhhHHHHHHHHHhcCCC----CcceEEEcCCCCCCchHHHhHHHHHHhHhhcC--C-eEEEEEc
Q 023192 189 VLGLGFKIFLL-TGRSEKQRSITVDNLINAGVR----YWDKLILRSSDDHGKLAIIYKSEKRNEMVQEG--Y-RILGNSG 260 (286)
Q Consensus 189 Lk~~G~~Ii~v-TgR~e~~r~~T~~~L~~~Gi~----~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G--y-~i~~~IG 260 (286)
++..++..+++ -+. ........+.|...|+. .+.--++.. + .|.. .++.-++..| . ..+++||
T Consensus 144 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~-~--~Kg~-----al~~l~~~~~i~~~~~v~~~G 214 (273)
T PRK00192 144 AKDREFSEPFLWNGS-EAAKERFEEALKRLGLKVTRGGRFLHLLGG-G--DKGK-----AVRWLKELYRRQDGVETIALG 214 (273)
T ss_pred HHhcccCCceeecCc-hHHHHHHHHHHHHcCCEEEECCeEEEEeCC-C--CHHH-----HHHHHHHHHhccCCceEEEEc
Confidence 44555655555 332 33456667777777764 211112222 2 2311 1111111122 3 5799999
Q ss_pred CChhhhccCCCCCcEEEecC
Q 023192 261 DQWSDLLGSPMPSRSFKLPN 280 (286)
Q Consensus 261 Dq~sDl~ga~~g~r~fkLPN 280 (286)
|+.+|+.........+...|
T Consensus 215 Ds~NDi~m~~~ag~~vam~N 234 (273)
T PRK00192 215 DSPNDLPMLEAADIAVVVPG 234 (273)
T ss_pred CChhhHHHHHhCCeeEEeCC
Confidence 99999988765445566655
No 218
>PLN03190 aminophospholipid translocase; Provisional
Probab=80.37 E-value=8.5 Score=42.76 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=27.5
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
.+++.+++.+.++.|++.|+++.++||-..
T Consensus 724 ~D~lr~~v~~~I~~l~~agi~v~mlTGD~~ 753 (1178)
T PLN03190 724 EDKLQQGVPEAIESLRTAGIKVWVLTGDKQ 753 (1178)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCH
Confidence 468999999999999999999999999764
No 219
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=80.16 E-value=0.94 Score=38.65 Aligned_cols=24 Identities=25% Similarity=0.298 Sum_probs=18.5
Q ss_pred HHHHhHhhcCCeEEEEEcCChhhh
Q 023192 243 EKRNEMVQEGYRILGNSGDQWSDL 266 (286)
Q Consensus 243 ~~r~~L~~~Gy~i~~~IGDq~sDl 266 (286)
...+.|.+.|+++.+.-||+..-.
T Consensus 134 ~~l~~L~~~Gi~~~i~TGD~~~~a 157 (215)
T PF00702_consen 134 EALQELKEAGIKVAILTGDNESTA 157 (215)
T ss_dssp HHHHHHHHTTEEEEEEESSEHHHH
T ss_pred hhhhhhhccCcceeeeeccccccc
Confidence 566778888999999999976433
No 220
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=79.03 E-value=1.7 Score=38.94 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=19.7
Q ss_pred eEEEEEcCCh-hhhccCC-CCCcEEEe
Q 023192 254 RILGNSGDQW-SDLLGSP-MPSRSFKL 278 (286)
Q Consensus 254 ~i~~~IGDq~-sDl~ga~-~g~r~fkL 278 (286)
+.+++|||+. +|+.+|+ +|.+++.+
T Consensus 207 ~~~~~IGD~~~~Di~~A~~~G~~~i~v 233 (236)
T TIGR01460 207 RRDVMVGDNLRTDILGAKNAGFDTLLV 233 (236)
T ss_pred cceEEECCCcHHHHHHHHHCCCcEEEE
Confidence 3458999998 8999984 68777655
No 221
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=75.96 E-value=13 Score=30.34 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=41.6
Q ss_pred eEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCCh
Q 023192 195 KIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQW 263 (286)
Q Consensus 195 ~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~ 263 (286)
+||+++||....+....+.|++.|+. .++.......+++.. +.+.+.+..-+|-|+++-.|..
T Consensus 1 kVFIvhg~~~~~~~~v~~~L~~~~~e---p~i~~~~~~~g~tii---e~le~~~~~~~faIvl~TpDD~ 63 (125)
T PF10137_consen 1 KVFIVHGRDLAAAEAVERFLEKLGLE---PIIWHEQPNLGQTII---EKLEEAADSVDFAIVLFTPDDI 63 (125)
T ss_pred CEEEEeCCCHHHHHHHHHHHHhCCCc---eEEeecCCCCCCchH---HHHHHHhccCCEEEEEEccccc
Confidence 58999999998899999999988885 334443333344322 2344445555677887766544
No 222
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=75.30 E-value=2.8 Score=24.69 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhhhc
Q 023192 19 IVLLFSLCSLISRAFS 34 (286)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (286)
|++++....+|++|++
T Consensus 10 il~~l~a~~~LagCss 25 (25)
T PF08139_consen 10 ILFPLLALFMLAGCSS 25 (25)
T ss_pred HHHHHHHHHHHhhccC
Confidence 4455555556999975
No 223
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=74.89 E-value=15 Score=33.65 Aligned_cols=103 Identities=13% Similarity=0.136 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceE-----EEcCCCC----
Q 023192 162 FNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKL-----ILRSSDD---- 232 (286)
Q Consensus 162 f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~L-----ilr~~~~---- 232 (286)
++.+...+-+.+......+|+.++++.|.++++++.+.|+-- -+..+..|++.|.- ++.+ +|.=+.+
T Consensus 75 l~k~~i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGl---gdvI~~vL~q~~~~-~~Nv~VvSN~M~Fd~~g~l~ 150 (246)
T PF05822_consen 75 LTKSEIEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGL---GDVIEEVLRQAGVF-HPNVKVVSNFMDFDEDGVLV 150 (246)
T ss_dssp -BGGGHHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEE---HHHHHHHHHHTT---BTTEEEEEE-EEE-TTSBEE
T ss_pred cCHHHHHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCc---HHHHHHHHHHcCCC-CCCeEEEeeeEEECCcceEe
Confidence 444556666777777888999999999999999999999875 67888889988754 2211 2221111
Q ss_pred --C-------CchHHHh-HHHHHHhHhhcCCeEEEEEcCChhhhccCC
Q 023192 233 --H-------GKLAIIY-KSEKRNEMVQEGYRILGNSGDQWSDLLGSP 270 (286)
Q Consensus 233 --~-------~Kp~~~y-Ks~~r~~L~~~Gy~i~~~IGDq~sDl~ga~ 270 (286)
+ .|..... -....+++. +.+-++.+||+..|+.-+.
T Consensus 151 gF~~~lIH~~NKn~~~l~~~~~~~~~~--~R~NvlLlGDslgD~~Ma~ 196 (246)
T PF05822_consen 151 GFKGPLIHTFNKNESALEDSPYFKQLK--KRTNVLLLGDSLGDLHMAD 196 (246)
T ss_dssp EE-SS---TT-HHHHHHTTHHHHHCTT--T--EEEEEESSSGGGGTTT
T ss_pred ecCCCceEEeeCCcccccCchHHHHhc--cCCcEEEecCccCChHhhc
Confidence 0 1111111 112233332 2346778999999998775
No 224
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=74.53 E-value=10 Score=40.49 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=64.3
Q ss_pred HHHHHHHHh-----------cCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcce--EEEcCCC
Q 023192 165 VEFDKWVEK-----------AMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK--LILRSSD 231 (286)
Q Consensus 165 ~~~~~wv~~-----------~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~--Lilr~~~ 231 (286)
.+|++|... -++|..||+.+.++.++..|++|-.|||-.-.. ....-.+.|+-.-+. +.+-+..
T Consensus 624 ~~~~~~~~~~~~lt~laivGIkDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~T---AkAIA~eCGILt~~~d~~~lEG~e 700 (1034)
T KOG0204|consen 624 PSWDNEELPEGGLTLLAIVGIKDPVRPGVPEAVQLCQRAGITVRMVTGDNINT---AKAIARECGILTPGGDFLALEGKE 700 (1034)
T ss_pred CCccccccCCCCeEEEEEeeccCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHH---HHHHHHHcccccCCCccceecchh
Confidence 457766553 378999999999999999999999999987433 223335567743222 3333322
Q ss_pred CC-----------------CchHHHhHHHHHHhHhhcCCeEEEEEcCChhhhcc
Q 023192 232 DH-----------------GKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLG 268 (286)
Q Consensus 232 ~~-----------------~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl~g 268 (286)
.+ ....|.-|.-+-+.|++.| .++++-||-.+|--+
T Consensus 701 Fr~~s~ee~~~i~pkl~VlARSSP~DK~lLVk~L~~~g-~VVAVTGDGTNDaPA 753 (1034)
T KOG0204|consen 701 FRELSQEERDKIWPKLRVLARSSPNDKHLLVKGLIKQG-EVVAVTGDGTNDAPA 753 (1034)
T ss_pred hhhcCHHHHHhhhhhheeeecCCCchHHHHHHHHHhcC-cEEEEecCCCCCchh
Confidence 11 0011233555666666554 588999999999755
No 225
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=74.17 E-value=7.2 Score=33.88 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=21.4
Q ss_pred EEEEEcCChhhhccCCCCCcEEEecCC
Q 023192 255 ILGNSGDQWSDLLGSPMPSRSFKLPNP 281 (286)
Q Consensus 255 i~~~IGDq~sDl~ga~~g~r~fkLPNp 281 (286)
.+++|||+.+|+.........|.+.|.
T Consensus 165 ~~i~iGDs~ND~~ml~~ag~~vam~na 191 (215)
T TIGR01487 165 EVAAIGDSENDIDLFRVVGFKVAVANA 191 (215)
T ss_pred HEEEECCCHHHHHHHHhCCCeEEcCCc
Confidence 488999999999988755566777663
No 226
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=72.28 E-value=4.7 Score=37.87 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=19.7
Q ss_pred eEEEEEcCCh-hhhccCC-CCCcEEEe
Q 023192 254 RILGNSGDQW-SDLLGSP-MPSRSFKL 278 (286)
Q Consensus 254 ~i~~~IGDq~-sDl~ga~-~g~r~fkL 278 (286)
+.+++|||++ +|+.||+ +|..++-+
T Consensus 264 ~~~~mIGD~~~tDI~ga~~~G~~silV 290 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQNYGWFSCLV 290 (321)
T ss_pred heEEEEcCChhhhhhhHHhCCceEEEe
Confidence 4789999998 9999985 56666544
No 227
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=70.29 E-value=19 Score=36.54 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=53.8
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHH-HhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNL-INAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGY 253 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L-~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy 253 (286)
++...||..|=+.+|++.|++-+.+||-.+ .|.++. .++|.++|- . +.+| +-|-...++-+.+|
T Consensus 445 kDivK~Gi~ERf~elR~MgIkTvM~TGDN~----~TAa~IA~EAGVDdfi----A----eatP--EdK~~~I~~eQ~~g- 509 (681)
T COG2216 445 KDIVKPGIKERFAELRKMGIKTVMITGDNP----LTAAAIAAEAGVDDFI----A----EATP--EDKLALIRQEQAEG- 509 (681)
T ss_pred hhhcchhHHHHHHHHHhcCCeEEEEeCCCH----HHHHHHHHHhCchhhh----h----cCCh--HHHHHHHHHHHhcC-
Confidence 455668999999999999999999999873 455554 456887531 1 1222 22434444434443
Q ss_pred eEEEEEcCChhhhcc
Q 023192 254 RILGNSGDQWSDLLG 268 (286)
Q Consensus 254 ~i~~~IGDq~sDl~g 268 (286)
+.+++.||-.+|--+
T Consensus 510 rlVAMtGDGTNDAPA 524 (681)
T COG2216 510 RLVAMTGDGTNDAPA 524 (681)
T ss_pred cEEEEcCCCCCcchh
Confidence 689999999999744
No 228
>PRK10444 UMP phosphatase; Provisional
Probab=69.43 E-value=5.6 Score=36.08 Aligned_cols=47 Identities=17% Similarity=0.037 Sum_probs=29.3
Q ss_pred CCCchHHHhHHHHHHhHhhcCCeEEEEEcCCh-hhhccCC-CCCcEEEec
Q 023192 232 DHGKLAIIYKSEKRNEMVQEGYRILGNSGDQW-SDLLGSP-MPSRSFKLP 279 (286)
Q Consensus 232 ~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~-sDl~ga~-~g~r~fkLP 279 (286)
..+||.+..-....+.+. ...+.+++|||+. +|+.+|+ +|.+++.+.
T Consensus 171 ~~gKP~~~~~~~~~~~~~-~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~ 219 (248)
T PRK10444 171 YVGKPSPWIIRAALNKMQ-AHSEETVIVGDNLRTDILAGFQAGLETILVL 219 (248)
T ss_pred ccCCCCHHHHHHHHHHcC-CCcccEEEECCCcHHHHHHHHHcCCCEEEEC
Confidence 346776643222233322 1234689999997 8999984 688877663
No 229
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=66.84 E-value=18 Score=29.97 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=48.8
Q ss_pred CccEEEEecCCCccCCchhhhhhcC--CCccCCHHHHHHHHHh-cCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHH
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGY--GLEIFNPVEFDKWVEK-AMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSI 209 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~--g~~~f~~~~~~~wv~~-~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~ 209 (286)
.++++.||+|=|++. .+...+. .-.||-. +.-.. ....-++.+...|..|+++|++++.+|.-.. -+.
T Consensus 4 ~p~~~~fdldytiwP---~~vdthl~~pfkP~k~----~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~a--p~i 74 (144)
T KOG4549|consen 4 KPEAMQFDLDYTIWP---RLVDTHLDYPFKPFKC----ECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMA--PQI 74 (144)
T ss_pred CCceeEEeccceeee---EEEEeccccccccccc----CcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCC--HHH
Confidence 467888999998863 2222111 0011100 00011 1345678999999999999999999998764 344
Q ss_pred HHHHHHhcCCC
Q 023192 210 TVDNLINAGVR 220 (286)
Q Consensus 210 T~~~L~~~Gi~ 220 (286)
..+-|+.+.++
T Consensus 75 A~q~L~~fkvk 85 (144)
T KOG4549|consen 75 ASQGLETFKVK 85 (144)
T ss_pred HHHHHHHhccC
Confidence 55667766665
No 230
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=65.00 E-value=26 Score=35.16 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=58.7
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcce-EEEcCCCCCCc-hHHHhHHHHHHhHhhcCCe
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK-LILRSSDDHGK-LAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~-Lilr~~~~~~K-p~~~yKs~~r~~L~~~Gy~ 254 (286)
-|.....+|++.+.+.|.+|+++|.---. -+..+..|...|+..+.- ++|.+..--.| +.-.+|.-+..+ .-...
T Consensus 99 ypn~~~~eL~e~ai~n~krVIlISDMYlp-s~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~E--nVd~~ 175 (635)
T COG5610 99 YPNKKNIELVEEAIKNEKRVILISDMYLP-SSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLE--NVDPK 175 (635)
T ss_pred eccccchHHHHHHHhCCCeEEEEecccCc-HHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhhc--CCChh
Confidence 45557789999999999999999987421 456778889999986543 66665432222 122344332222 11234
Q ss_pred EEEEEcCCh-hhhccCC
Q 023192 255 ILGNSGDQW-SDLLGSP 270 (286)
Q Consensus 255 i~~~IGDq~-sDl~ga~ 270 (286)
-|+.+||+| .|...++
T Consensus 176 ~w~H~GDN~~aD~l~pk 192 (635)
T COG5610 176 KWIHCGDNWVADYLKPK 192 (635)
T ss_pred heEEecCchhhhhcCcc
Confidence 699999998 6766553
No 231
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=64.46 E-value=8.1 Score=38.37 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN 216 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~ 216 (286)
-|....+|++|++.|.+++++||.+-..-+...+.|-.
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g 222 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLG 222 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCG
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccC
Confidence 46788999999999999999999987666666666633
No 232
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=62.13 E-value=14 Score=31.28 Aligned_cols=54 Identities=7% Similarity=0.149 Sum_probs=37.5
Q ss_pred CCcccHHHHHHHHHHHHCCCeEEEEcCCch--hhHHHHHHHHHhc-CCCCcceEEEcC
Q 023192 175 MSPAIEASLKLYEEVLGLGFKIFLLTGRSE--KQRSITVDNLINA-GVRYWDKLILRS 229 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e--~~r~~T~~~L~~~-Gi~~~~~Lilr~ 229 (286)
.-...|++.+.+++|-+. +.|.++|.-.. ..-+.--+||.+. -|-.+..+++.+
T Consensus 66 nL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCg 122 (180)
T COG4502 66 NLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCG 122 (180)
T ss_pred hcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEec
Confidence 346778999999999775 99999998732 2234556788764 444466666665
No 233
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=61.15 E-value=64 Score=34.77 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=40.2
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
+-+....||+|.--. |-+.-...|- ..--+||.+.+.+.+.++++.|++++.+||+..
T Consensus 560 ~~p~~~~f~~d~~n~---p~~nl~FlGl------------~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhp 617 (1019)
T KOG0203|consen 560 KFPRGFQFDTDDVNF---PTDNLRFLGL------------ISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHP 617 (1019)
T ss_pred cCCCceEeecCCCCC---cchhccccch------------hhccCCCcccCchhhhhhhhhCceEEEEecCcc
Confidence 446678999987433 2221111111 112578999999999999999999999999964
No 234
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=61.08 E-value=29 Score=30.94 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=24.0
Q ss_pred CeEEEEEcCChhhhccCCC-CCcEEEecCC
Q 023192 253 YRILGNSGDQWSDLLGSPM-PSRSFKLPNP 281 (286)
Q Consensus 253 y~i~~~IGDq~sDl~ga~~-g~r~fkLPNp 281 (286)
...++++||+.+|+..... +..++.+.|.
T Consensus 183 ~~~~i~~GD~~ND~~ml~~~~~~~va~~na 212 (249)
T TIGR01485 183 PSQTLVCGDSGNDIELFEIGSVRGVIVSNA 212 (249)
T ss_pred ccCEEEEECChhHHHHHHccCCcEEEECCC
Confidence 3468999999999999875 7778888875
No 235
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=58.46 E-value=25 Score=32.97 Aligned_cols=24 Identities=4% Similarity=0.119 Sum_probs=19.8
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEc
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLT 200 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vT 200 (286)
..+|...+++++|+++|+++++..
T Consensus 63 ~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 63 ERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEe
Confidence 346677899999999999988755
No 236
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=56.41 E-value=38 Score=37.25 Aligned_cols=43 Identities=23% Similarity=0.184 Sum_probs=31.3
Q ss_pred HHHHHHHHH----HCCCeEEEEcCCchhhHHHHHHHHHhcCCC--CcceEEE
Q 023192 182 SLKLYEEVL----GLGFKIFLLTGRSEKQRSITVDNLINAGVR--YWDKLIL 227 (286)
Q Consensus 182 v~ell~~Lk----~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~--~~~~Lil 227 (286)
+.++++.++ ...+..+|+|||+ ...+.+.|++.|++ .++.+|.
T Consensus 789 l~~~~~~~~~~~~~~~igfv~aTGR~---l~~~~~~l~~~~lp~~~PD~lI~ 837 (1050)
T TIGR02468 789 IKNIFEAVRKERMEGSSGFILSTSMT---ISEIQSFLKSGGLNPTDFDALIC 837 (1050)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCC---HHHHHHHHHhCCCCCCCCCEEEe
Confidence 444455554 2337889999999 77889999999998 6666553
No 237
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=55.57 E-value=18 Score=32.29 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q 023192 11 ISTMGLFRIVLLFSLCSLISRAFSH 35 (286)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (286)
++|--.++-+|++..|.+.|+|-.|
T Consensus 57 cVTg~sllsli~VtvaalYsSC~~~ 81 (235)
T PF11359_consen 57 CVTGFSLLSLIVVTVAALYSSCCRR 81 (235)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHhC
Confidence 3444456667778889999999887
No 238
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.55 E-value=27 Score=32.31 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcC
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTG 201 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTg 201 (286)
..+|...+++++|+++|+++++...
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeC
Confidence 3567889999999999999998774
No 239
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=53.10 E-value=58 Score=30.37 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=35.4
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCC
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRY 221 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~ 221 (286)
.---||+..+.+.|+..|.++.++|.+. +.....+-++.++...
T Consensus 59 TDGP~GA~aLa~aL~~lG~~~~ivtd~~--~~~~~~~~~~~~~~~~ 102 (291)
T PF14336_consen 59 TDGPPGAAALARALQALGKEVVIVTDER--CAPVVKAAVRAAGLQG 102 (291)
T ss_pred CCChHHHHHHHHHHHHcCCeEEEEECHH--HHHHHHHHHHHHhhCc
Confidence 3456799999999999999999999765 4667777777777753
No 240
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=52.74 E-value=32 Score=32.79 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 180 EASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 180 pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
.--..++++|.++|+.|.+.+- . ...|.+.|+.+|++
T Consensus 14 hfFk~~I~eL~~~GheV~it~R-~---~~~~~~LL~~yg~~ 50 (335)
T PF04007_consen 14 HFFKNIIRELEKRGHEVLITAR-D---KDETEELLDLYGID 50 (335)
T ss_pred HHHHHHHHHHHhCCCEEEEEEe-c---cchHHHHHHHcCCC
Confidence 3455678899999999876554 4 46889999999997
No 241
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=52.39 E-value=13 Score=34.50 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=18.6
Q ss_pred EEEEEcCCh-hhhccCC-CCCcEEEe
Q 023192 255 ILGNSGDQW-SDLLGSP-MPSRSFKL 278 (286)
Q Consensus 255 i~~~IGDq~-sDl~ga~-~g~r~fkL 278 (286)
.+++|||+. +||.+|. +|+.++.+
T Consensus 209 ~~~mVGD~~~TDI~~a~~~G~~t~LV 234 (269)
T COG0647 209 EVLMVGDRLDTDILGAKAAGLDTLLV 234 (269)
T ss_pred cEEEEcCCchhhHHHHHHcCCCEEEE
Confidence 688999999 9999984 56665543
No 242
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=52.06 E-value=44 Score=28.77 Aligned_cols=68 Identities=10% Similarity=0.173 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhhhhccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCC
Q 023192 114 ERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLG 193 (286)
Q Consensus 114 ~~v~~~a~~y~~~~~~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G 193 (286)
....+||..+++.++..+...+.+++||..+ ... + . -+.+ .....+.++++.+++.|
T Consensus 67 ~~~~~Qa~~f~~~~~~~~~~~~~i~lDiE~~--~~~--~-----~---~~~~-----------~~~~~~~~f~~~~~~~G 123 (196)
T cd06416 67 GSAAGQVQTFLQYLKANGIKYGTVWIDIEQN--PCQ--W-----S---SDVA-----------SNCQFLQELVSAAKALG 123 (196)
T ss_pred CCHHHHHHHHHHHHHhCCCceeEEEEEEecC--CCC--C-----c---CCHH-----------HHHHHHHHHHHHHHHhC
Confidence 3456789888887765434445677999975 110 0 0 0111 11234667888888889
Q ss_pred CeEEEEcCCch
Q 023192 194 FKIFLLTGRSE 204 (286)
Q Consensus 194 ~~Ii~vTgR~e 204 (286)
.+++|-|++..
T Consensus 124 ~~~~iYt~~~~ 134 (196)
T cd06416 124 LKVGIYSSQYD 134 (196)
T ss_pred CeEEEEcCcch
Confidence 99999999863
No 243
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=51.90 E-value=25 Score=26.36 Aligned_cols=31 Identities=32% Similarity=0.486 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 182 SLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 182 v~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
..++.+.|.+.|++|+ .|.- |.++|++.|++
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~g-------Ta~~L~~~Gi~ 32 (90)
T smart00851 2 LVELAKRLAELGFELV-ATGG-------TAKFLREAGLP 32 (90)
T ss_pred HHHHHHHHHHCCCEEE-EccH-------HHHHHHHCCCc
Confidence 4578888999999995 5553 56889999996
No 244
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.59 E-value=41 Score=31.53 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=28.1
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCC
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGV 219 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi 219 (286)
..+|...+++++|+++|+++++...---......-+.+.+.|+
T Consensus 67 ~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 67 KAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGA 109 (317)
T ss_pred ccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCC
Confidence 4556678999999999999998764221111223445666666
No 245
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=50.34 E-value=8.5 Score=32.80 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhhccccc
Q 023192 20 VLLFSLCSLISRAFSHETV 38 (286)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~ 38 (286)
+++++++++|++|.|.+..
T Consensus 2 ~~~l~~~~llagCss~~~~ 20 (158)
T PF13798_consen 2 IPLLSLSLLLAGCSSDEDS 20 (158)
T ss_pred hHHHHHHHHHHHcCCCCcc
Confidence 5678889999999997663
No 246
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=49.81 E-value=22 Score=27.83 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
.+.+++.++.++++|.+++.+|+.+.
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 35789999999999999999999874
No 247
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=48.39 E-value=24 Score=27.68 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchh
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEK 205 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~ 205 (286)
..+.+.+.++.++++|.+++.+|+.+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3467889999999999999999998753
No 248
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=48.37 E-value=8 Score=33.69 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhhccccccccCCCCCCCCceeeccCchhhhhhhhhhhhhhc-cchhHHHHhHhhcC
Q 023192 19 IVLLFSLCSLISRAFSHETVNAHNNHILPRPLILKYPDNLIETQLNQLNEEVKL-QCTTWRFAVEANNL 86 (286)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~c~sw~~~ve~nn~ 86 (286)
-.|+.+||.||++|.+- |.=++=++..+........+.... .|.+-|++-..-|+
T Consensus 10 ~~l~~~laflLsgC~ti-------------Pk~l~g~~~~s~~s~~~~~~~~~~~~gq~aR~GGkVvnv 65 (191)
T COG3065 10 GALIGTLAFLLSGCVTI-------------PKALKGESPTSQQSLVRVMSQPQLYVGQQARFGGKVVNV 65 (191)
T ss_pred HHHHHHHHHHHhhcccC-------------ChhhcCCCCcchhheeeeccCCcccccceeeeCcEEEEE
Confidence 34566788999999876 333333322222222222223333 37777777766664
No 249
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=47.83 E-value=1.6e+02 Score=24.21 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=47.8
Q ss_pred HHHHHHHHHHCCCeEEEEcCCc---hhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEE
Q 023192 182 SLKLYEEVLGLGFKIFLLTGRS---EKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGN 258 (286)
Q Consensus 182 v~ell~~Lk~~G~~Ii~vTgR~---e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~ 258 (286)
..++++..++.+..++.+|+=. ...-..+.+.|++.|+.. -.++..+.-.-+..+. ...+.+|++.|+.-+.-
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~-v~vivGG~~~i~~~d~---~~~~~~L~~~Gv~~vf~ 114 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKD-ILLYVGGNLVVGKQDF---EDVEKRFKEMGFDRVFA 114 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCC-CeEEEECCCCCChhhh---HHHHHHHHHcCCCEEEC
Confidence 4556667777788888877743 223456777888888864 4455554321111111 12345677778876666
Q ss_pred EcCChhhh
Q 023192 259 SGDQWSDL 266 (286)
Q Consensus 259 IGDq~sDl 266 (286)
-|+.+.++
T Consensus 115 pgt~~~~i 122 (128)
T cd02072 115 PGTPPEEA 122 (128)
T ss_pred cCCCHHHH
Confidence 66666554
No 250
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=47.35 E-value=1.4e+02 Score=29.48 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=44.7
Q ss_pred CCccEEEEecCCCccCCchhhhhhc----CCCccCCHH-HH---H-----HHHHhcCCcccHHHHHHHHH----HHHCCC
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHG----YGLEIFNPV-EF---D-----KWVEKAMSPAIEASLKLYEE----VLGLGF 194 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~----~g~~~f~~~-~~---~-----~wv~~~~~~~~pgv~ell~~----Lk~~G~ 194 (286)
..+..|++|||.|..++........ +|...|.|= .| . .+...++...-.|+.++++. ++++.-
T Consensus 137 ~~~~~i~LDiD~T~~~~~G~Qe~~~~n~y~g~~gY~PL~~f~g~~G~~l~a~LRpGn~~sa~g~~~fL~~~l~~lr~~~~ 216 (448)
T PF13701_consen 137 KPPKEIVLDIDSTVDDVHGEQEGAVFNTYYGEDGYHPLVAFDGQTGYLLAAELRPGNVHSAKGAAEFLKRVLRRLRQRWP 216 (448)
T ss_pred cccceEEEecccccccchhhcccccccccCCCcccccceeccCCCCceEEEEccCCCCChHHHHHHHHHHHHHHHhhhCc
Confidence 3468999999999987654332211 121112110 01 1 11112334444455555443 444332
Q ss_pred e-EEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 195 K-IFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 195 ~-Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
. -+++=+-+...+....+++++.|..
T Consensus 217 ~~~ILvR~DSgF~~~el~~~ce~~g~~ 243 (448)
T PF13701_consen 217 DTRILVRGDSGFASPELMDWCEAEGVD 243 (448)
T ss_pred cceEEEEecCccCcHHHHHHHHhCCCe
Confidence 1 2345554555567777788888775
No 251
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=46.95 E-value=27 Score=27.27 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 180 EASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 180 pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
+.+.++++.++++|.+++.+|++.+
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 4688889999999999999999875
No 252
>COG5510 Predicted small secreted protein [Function unknown]
Probab=46.54 E-value=23 Score=23.65 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 023192 16 LFRIVLLFSLCSLISRA 32 (286)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (286)
.++|.++++.|..|.+|
T Consensus 6 ~l~i~~vll~s~llaaC 22 (44)
T COG5510 6 ILLIALVLLASTLLAAC 22 (44)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 36778888889999999
No 253
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=46.13 E-value=1.4e+02 Score=28.10 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=28.4
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCC
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGV 219 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi 219 (286)
...|...++++.++++|+.+++.||-.- ....+.| ..+.
T Consensus 142 lL~p~l~eli~~~k~~Gi~~~L~TNG~~---~e~l~~L-~~~~ 180 (322)
T PRK13762 142 TLYPYLPELIEEFHKRGFTTFLVTNGTR---PDVLEKL-EEEP 180 (322)
T ss_pred cchhhHHHHHHHHHHcCCCEEEECCCCC---HHHHHHH-HhcC
Confidence 3456788999999999999999999852 2344455 3344
No 254
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=45.76 E-value=1.7e+02 Score=24.01 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=46.0
Q ss_pred HHHHHHHHHHCCCeEEEEcCCchhh---HHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEE
Q 023192 182 SLKLYEEVLGLGFKIFLLTGRSEKQ---RSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGN 258 (286)
Q Consensus 182 v~ell~~Lk~~G~~Ii~vTgR~e~~---r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~ 258 (286)
..++++...+.+..++.+|...... -..+.+.|++.|++. -.++..+....++.++ .+.+..+++.|+..+.-
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~-~~i~vGG~~~~~~~~~---~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGD-ILLYVGGNLVVGKHDF---EEVEKKFKEMGFDRVFP 118 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCC-CeEEEECCCCCCccCh---HHHHHHHHHcCCCEEEC
Confidence 4455566677788888888765433 344556677777764 3455555432222111 23455667778766654
Q ss_pred EcCChhhh
Q 023192 259 SGDQWSDL 266 (286)
Q Consensus 259 IGDq~sDl 266 (286)
-|..+.++
T Consensus 119 ~~~~~~~i 126 (137)
T PRK02261 119 PGTDPEEA 126 (137)
T ss_pred cCCCHHHH
Confidence 45555544
No 255
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=45.15 E-value=31 Score=26.87 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 180 EASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 180 pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
....+.++.++++|.+++.+|+.++
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 4788889999999999999999875
No 256
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=45.09 E-value=45 Score=31.48 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHCCC--eEEEEcCCchhhHHHHHHHHHhcCCCC
Q 023192 181 ASLKLYEEVLGLGF--KIFLLTGRSEKQRSITVDNLINAGVRY 221 (286)
Q Consensus 181 gv~ell~~Lk~~G~--~Ii~vTgR~e~~r~~T~~~L~~~Gi~~ 221 (286)
.+.++++..++.|. +|++.=+||..+-..+.+.|+++|++.
T Consensus 131 ~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~ 173 (301)
T COG1184 131 TVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPV 173 (301)
T ss_pred HHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCce
Confidence 68889999888885 999999999999899999999999874
No 257
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=44.70 E-value=42 Score=29.76 Aligned_cols=45 Identities=24% Similarity=0.178 Sum_probs=37.7
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCC
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRY 221 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~ 221 (286)
+-++.++-++-+.+++.++.++++|=..+. .+.+.+.|-++|+.+
T Consensus 129 ~v~V~~~d~le~~v~~~dv~iaiLtVPa~~-AQ~vad~Lv~aGVkG 173 (211)
T COG2344 129 DVPVYDLDDLEKFVKKNDVEIAILTVPAEH-AQEVADRLVKAGVKG 173 (211)
T ss_pred CeeeechHHHHHHHHhcCccEEEEEccHHH-HHHHHHHHHHcCCce
Confidence 467778888888899999999999997654 567888999999986
No 258
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=44.35 E-value=51 Score=25.26 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
.++...+++++++++|+.++.+|..+ .+...+++++.+++
T Consensus 44 ~l~~l~~~~~~~~~~~~~vi~is~d~---~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 44 ELPELNELYKKYKDKGVQVIGISTDD---PEEIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEESSS---HHHHHHHHHHHTCS
T ss_pred chhHHHHHhhhhccceEEeeeccccc---ccchhhhhhhhccc
Confidence 45677888889999999999999977 44778899998876
No 259
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=42.86 E-value=47 Score=26.03 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
.+.+.++.+.+.+.|++|+ .|+- |.++|++.|++
T Consensus 11 K~~~~~~a~~l~~~G~~i~-AT~g-------Ta~~L~~~Gi~ 44 (112)
T cd00532 11 KAMLVDLAPKLSSDGFPLF-ATGG-------TSRVLADAGIP 44 (112)
T ss_pred HHHHHHHHHHHHHCCCEEE-ECcH-------HHHHHHHcCCc
Confidence 3567888889999999995 6643 67889999997
No 260
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=42.79 E-value=31 Score=29.10 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchh
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEK 205 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~ 205 (286)
-.+.++++++.++++|.+++.+|+.+..
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3467899999999999999999998753
No 261
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=42.59 E-value=1.6e+02 Score=22.91 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
.+...++.+.|.+.|++|+ .|+- |.++|++.|++
T Consensus 12 k~~~~~~a~~l~~~G~~i~-aT~g-------Ta~~L~~~gi~ 45 (116)
T cd01423 12 KPELLPTAQKLSKLGYKLY-ATEG-------TADFLLENGIP 45 (116)
T ss_pred chhHHHHHHHHHHCCCEEE-EccH-------HHHHHHHcCCC
Confidence 3567788889999999996 4543 67899999997
No 262
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=42.44 E-value=36 Score=29.86 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
.+++.++.+.|.+.|++|+ .|+- |.++|+++|++
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~G-------TAk~L~e~GI~ 43 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STGG-------TAKFLKEAGIP 43 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-EccH-------HHHHHHHcCCe
Confidence 4688999999999999995 5554 67899999996
No 263
>PRK10215 hypothetical protein; Provisional
Probab=42.32 E-value=18 Score=32.54 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 023192 15 GLFRIVLLFSLCSLISRAFSH 35 (286)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ 35 (286)
|++..+-++++|-|||||.++
T Consensus 6 ~~~~~~~~~~~~~~LSGC~T~ 26 (218)
T PRK10215 6 GFFKAAGLLPLAFMLSGCISY 26 (218)
T ss_pred hhHHHHHHHHHHHHhhhcchH
Confidence 677888899999999999976
No 264
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=41.83 E-value=80 Score=24.29 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=40.8
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHH
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDN 213 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~ 213 (286)
...+|||+.+.-. .|. ..+....++.+.++++|.+++++.-++ ...+.
T Consensus 48 ~~~vIlD~s~v~~---------------iDs------------sgi~~L~~~~~~~~~~g~~~~l~~~~~-----~v~~~ 95 (117)
T PF01740_consen 48 IKNVILDMSGVSF---------------IDS------------SGIQALVDIIKELRRRGVQLVLVGLNP-----DVRRI 95 (117)
T ss_dssp SSEEEEEETTESE---------------ESH------------HHHHHHHHHHHHHHHTTCEEEEESHHH-----HHHHH
T ss_pred ceEEEEEEEeCCc---------------CCH------------HHHHHHHHHHHHHHHCCCEEEEEECCH-----HHHHH
Confidence 5799999998642 222 334456788889999999999988765 34555
Q ss_pred HHhcCCCC
Q 023192 214 LINAGVRY 221 (286)
Q Consensus 214 L~~~Gi~~ 221 (286)
|...|+..
T Consensus 96 l~~~~~~~ 103 (117)
T PF01740_consen 96 LERSGLID 103 (117)
T ss_dssp HHHTTGHH
T ss_pred HHHcCCCh
Confidence 88888864
No 265
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=41.77 E-value=35 Score=26.95 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchh
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEK 205 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~ 205 (286)
-+.+.+.++.++++|.+++.+|+.++.
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 357888999999999999999998753
No 266
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=41.65 E-value=37 Score=26.68 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCc
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRS 203 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~ 203 (286)
.+.+++.++.++++|.+++.+|+..
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4578888999999999999999865
No 267
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=41.52 E-value=39 Score=28.22 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=22.3
Q ss_pred HHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh
Q 023192 182 SLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN 216 (286)
Q Consensus 182 v~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~ 216 (286)
.-++++.+.+.|.++++.|.-... ..|.+.|..
T Consensus 65 ~~evi~~I~~~G~PviVAtDV~p~--P~~V~Kia~ 97 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIVATDVSPP--PETVKKIAR 97 (138)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCC--cHHHHHHHH
Confidence 345556678889999999997653 345555544
No 268
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=41.37 E-value=96 Score=26.36 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHhhhhhhccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 023192 112 DLERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLG 191 (286)
Q Consensus 112 D~~~v~~~a~~y~~~~~~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~ 191 (286)
+.+.+.+||..+++.++. +...+++|++.+.. ......+..|++++++
T Consensus 65 ~~~~a~~eA~~f~~~~~~---~~~~~~lD~E~~~~-----------------------------~~~~~~~~~f~~~v~~ 112 (177)
T cd06523 65 STADAKAEARDFYNRANK---KPTFYVLDVEVTSM-----------------------------SDMNAGVQAFISELRR 112 (177)
T ss_pred CHHHHHHHHHHHHHHhcC---CCceEEEeeccCCc-----------------------------chHHHHHHHHHHHHHH
Confidence 455677888888776643 34568899997432 1122357888999998
Q ss_pred CCC-eEEEEcCCc
Q 023192 192 LGF-KIFLLTGRS 203 (286)
Q Consensus 192 ~G~-~Ii~vTgR~ 203 (286)
+|. +++|=|++.
T Consensus 113 ~g~~~~~lYt~~~ 125 (177)
T cd06523 113 LGAKKVGLYIGHH 125 (177)
T ss_pred ccCCcEEEEchHH
Confidence 876 677778765
No 269
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=41.22 E-value=1.1e+02 Score=26.67 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHCCCe-EEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEE
Q 023192 181 ASLKLYEEVLGLGFK-IFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRIL 256 (286)
Q Consensus 181 gv~ell~~Lk~~G~~-Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~ 256 (286)
...+.+++++++|+. |++=+.-++.+|.-.++...++|+..+..|..++. .++.+++...|++.+
T Consensus 76 ~l~~~l~~~~~~g~~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~~~~-----------~~ll~e~~~~g~~~~ 141 (194)
T cd01994 76 DLKELLRKLKEEGVDAVVFGAILSEYQRTRVERVCERLGLEPLAPLWGRDQ-----------EELLREMIEAGFKAI 141 (194)
T ss_pred HHHHHHHHHHHcCCCEEEECccccHHHHHHHHHHHHHcCCEEEecccCCCH-----------HHHHHHHHHcCCeEE
Confidence 455566666666776 33334446778888999999999976555554431 356777788898843
No 270
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=40.95 E-value=1.2e+02 Score=28.71 Aligned_cols=27 Identities=4% Similarity=-0.038 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHCCCeEEEEcCCchhhH
Q 023192 181 ASLKLYEEVLGLGFKIFLLTGRSEKQR 207 (286)
Q Consensus 181 gv~ell~~Lk~~G~~Ii~vTgR~e~~r 207 (286)
.+.++.+.+++++-.+.|+.+|-....
T Consensus 192 ~i~~Ia~~ar~~~P~~~II~NnG~eil 218 (315)
T TIGR01370 192 FVCEIAAYARAQNPQFVIIPQNGEELL 218 (315)
T ss_pred HHHHHHHHHHHHCCCEEEEecCchhhh
Confidence 344444445999999999999986543
No 271
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=40.84 E-value=12 Score=24.97 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=11.4
Q ss_pred HHHHHHHhhhhcccc
Q 023192 23 FSLCSLISRAFSHET 37 (286)
Q Consensus 23 ~~~~~~~~~~~~~~~ 37 (286)
+.++++|+.||...+
T Consensus 10 ~~~~~~L~aCQaN~i 24 (46)
T PF02402_consen 10 FLLTMLLAACQANYI 24 (46)
T ss_pred HHHHHHHHHhhhcce
Confidence 344489999999865
No 272
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=40.77 E-value=1.1e+02 Score=28.62 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=48.6
Q ss_pred HHHHHHHHHHC-CC-eEEEEcCCchhhHHHHHHHHHhcCCCCcc-eEEEcCCCCC-CchHHHhHHHHHHhHhhcCCeEEE
Q 023192 182 SLKLYEEVLGL-GF-KIFLLTGRSEKQRSITVDNLINAGVRYWD-KLILRSSDDH-GKLAIIYKSEKRNEMVQEGYRILG 257 (286)
Q Consensus 182 v~ell~~Lk~~-G~-~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~-~Lilr~~~~~-~Kp~~~yKs~~r~~L~~~Gy~i~~ 257 (286)
...+++.|++. ++ ..+++||+. .....+.++.+|++ .+ .+.+...+.. .+.....-..+.+.+.+.++.++.
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h---~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~ 91 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQH---REMLDQVLDLFHLP-PDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVL 91 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCC---HHHHHHHHHhcCCC-CCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 44567777765 44 468899997 34555666667886 33 2233221111 111111123455566777889999
Q ss_pred EEcCChhhhccC
Q 023192 258 NSGDQWSDLLGS 269 (286)
Q Consensus 258 ~IGDq~sDl~ga 269 (286)
..||...-+.|+
T Consensus 92 ~~gd~~~~la~a 103 (365)
T TIGR00236 92 VQGDTTTTLAGA 103 (365)
T ss_pred EeCCchHHHHHH
Confidence 999987766553
No 273
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=40.66 E-value=27 Score=30.65 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhhhcccc
Q 023192 16 LFRIVLLFSLCSLISRAFSHET 37 (286)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~ 37 (286)
+++++++|+++++|++|.+.+.
T Consensus 10 ~~~~~~~~~~~~~l~ac~~~~~ 31 (190)
T PRK10838 10 ILRGIPAIAVAVLLSACSANNT 31 (190)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC
Confidence 6677888889999999987643
No 274
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=40.54 E-value=2.3e+02 Score=26.09 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=47.4
Q ss_pred HHHHHHHHHH--CCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhH-HHHHHhHhhcCCeEEEE
Q 023192 182 SLKLYEEVLG--LGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYK-SEKRNEMVQEGYRILGN 258 (286)
Q Consensus 182 v~ell~~Lk~--~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yK-s~~r~~L~~~Gy~i~~~ 258 (286)
++|.--+|++ .|.++..+|--++...+. .+..-..|.+ ..+++.+....+ .++.-- ..+...+++.|+. .+.
T Consensus 42 AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~-lr~aLAmGaD--raili~d~~~~~-~d~~~ta~~Laa~~~~~~~~-LVl 116 (260)
T COG2086 42 AVEEALRLKEKGYGGEVTVLTMGPPQAEEA-LREALAMGAD--RAILITDRAFAG-ADPLATAKALAAAVKKIGPD-LVL 116 (260)
T ss_pred HHHHHHHhhccCCCceEEEEEecchhhHHH-HHHHHhcCCC--eEEEEecccccC-ccHHHHHHHHHHHHHhcCCC-EEE
Confidence 3444345666 678999999987654333 3334445764 233333322222 222221 2344455666766 566
Q ss_pred EcCChhhhccCCC
Q 023192 259 SGDQWSDLLGSPM 271 (286)
Q Consensus 259 IGDq~sDl~ga~~ 271 (286)
.|+|..|-..+..
T Consensus 117 ~G~qa~D~~t~qv 129 (260)
T COG2086 117 TGKQAIDGDTGQV 129 (260)
T ss_pred EecccccCCccch
Confidence 8999999877653
No 275
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=40.34 E-value=87 Score=29.58 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=22.6
Q ss_pred EEEEEcCChhhhccCCCCCcEEEecCCC
Q 023192 255 ILGNSGDQWSDLLGSPMPSRSFKLPNPM 282 (286)
Q Consensus 255 i~~~IGDq~sDl~ga~~g~r~fkLPNp~ 282 (286)
.++.+||+++|+.-=.+....+.+|+|.
T Consensus 228 ~tiaLGDspND~~mLe~~D~~vvi~~~~ 255 (302)
T PRK12702 228 KALGIGCSPPDLAFLRWSEQKVVLPSPI 255 (302)
T ss_pred eEEEecCChhhHHHHHhCCeeEEecCCC
Confidence 6788999999998766667778888763
No 276
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=39.99 E-value=43 Score=32.56 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=38.0
Q ss_pred HHHHHHHHCCCeEEEEcCCchhh---------------------HHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHH
Q 023192 184 KLYEEVLGLGFKIFLLTGRSEKQ---------------------RSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKS 242 (286)
Q Consensus 184 ell~~Lk~~G~~Ii~vTgR~e~~---------------------r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs 242 (286)
-+-+.++.+|..++++||-++.. .+...+.++++|+. ++. ++|..++..+ ..-.
T Consensus 27 v~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~-~D~-F~rTt~~~h~---~~v~ 101 (391)
T PF09334_consen 27 VLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNIS-YDR-FIRTTDDRHK---EFVQ 101 (391)
T ss_dssp HHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SE-EEETTSHHHH---HHHH
T ss_pred HHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-Ccc-eeCCCCHHHH---HHHH
Confidence 34467788999999999998642 23445667778886 664 5565432222 2224
Q ss_pred HHHHhHhhcCC
Q 023192 243 EKRNEMVQEGY 253 (286)
Q Consensus 243 ~~r~~L~~~Gy 253 (286)
.+.+.|.+.|+
T Consensus 102 ~i~~~L~~~G~ 112 (391)
T PF09334_consen 102 EIFKRLYDNGY 112 (391)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhcCc
Confidence 56777777774
No 277
>PRK12342 hypothetical protein; Provisional
Probab=39.91 E-value=2.9e+02 Score=25.24 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=42.0
Q ss_pred HHHHCCCeEEEEcCCchhhHHH-HHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCChhhh
Q 023192 188 EVLGLGFKIFLLTGRSEKQRSI-TVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDL 266 (286)
Q Consensus 188 ~Lk~~G~~Ii~vTgR~e~~r~~-T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~sDl 266 (286)
+|++.|.+|.++|=-+...... ..+.--..|.+ ..+++.++...+.+...--..+-..+++.||..+ ..|.|..|-
T Consensus 46 rLk~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD--~avli~d~~~~g~D~~ata~~La~~i~~~~~DLV-l~G~~s~D~ 122 (254)
T PRK12342 46 QLATDGDEIAALTVGGSLLQNSKVRKDVLSRGPH--SLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLL-LFGEGSGDL 122 (254)
T ss_pred HHhhcCCEEEEEEeCCChHhHHHHHHHHHHcCCC--EEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEE-EEcCCcccC
Confidence 4556789999999887532222 22433445664 2334433322222111111223344445567654 479999998
Q ss_pred ccCC
Q 023192 267 LGSP 270 (286)
Q Consensus 267 ~ga~ 270 (286)
..+.
T Consensus 123 ~tgq 126 (254)
T PRK12342 123 YAQQ 126 (254)
T ss_pred CCCC
Confidence 7764
No 278
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=39.90 E-value=93 Score=30.37 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=51.4
Q ss_pred HHHHHHHHHCC-C-eEEEEcCCchhhHHHHHHHHHhcCCC--CcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEE
Q 023192 183 LKLYEEVLGLG-F-KIFLLTGRSEKQRSITVDNLINAGVR--YWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGN 258 (286)
Q Consensus 183 ~ell~~Lk~~G-~-~Ii~vTgR~e~~r~~T~~~L~~~Gi~--~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~ 258 (286)
..+++++.+.+ + .++++||-... .+.-...|+..+++ .|+--++.+....++-....-.++-+-+.+.....+++
T Consensus 20 apli~~~~~~~~~~~~vi~TGQH~d-~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlV 98 (383)
T COG0381 20 APLVKALEKDPDFELIVIHTGQHRD-YEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVLV 98 (383)
T ss_pred hHHHHHHHhCCCCceEEEEeccccc-HHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 34567777775 4 56788986521 16667777888876 34444554433322211111233334444556779999
Q ss_pred EcCChhhhccC
Q 023192 259 SGDQWSDLLGS 269 (286)
Q Consensus 259 IGDq~sDl~ga 269 (286)
-||+.+-+.|+
T Consensus 99 hGDT~t~lA~a 109 (383)
T COG0381 99 HGDTNTTLAGA 109 (383)
T ss_pred eCCcchHHHHH
Confidence 99999999875
No 279
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.71 E-value=85 Score=29.17 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcC
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTG 201 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTg 201 (286)
.+|+..+++++|+++|+++++...
T Consensus 68 ~FPdp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 68 KFPDPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred hCCCHHHHHHHHHHCCCeEEEEEC
Confidence 467789999999999999887544
No 280
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.65 E-value=1.3e+02 Score=28.03 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=63.5
Q ss_pred ccCchhh-HHHHHhcccCCCccccHHHHHHHHHHhhhh-hhccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHH
Q 023192 90 KTIPREC-LEYVRDYMMGRGYGLDLERVSNEAGVYAKS-VELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEF 167 (286)
Q Consensus 90 ~~vP~~c-~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~-~~~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~ 167 (286)
+.++.+| ..+++-|.....-.-|.-..+++=..|... -..+++ |+. ..+|+...-
T Consensus 72 ~~~~~e~~~k~~~LyhkY~PIEidP~ltieEKvp~MeeWW~kSH~------------Lli-----------q~~f~k~~I 128 (298)
T KOG3128|consen 72 KRLKPECRAKFVALYHKYYPIEIDPVLTIEEKVPHMEEWWTKSHE------------LLI-----------QGGFSKNAI 128 (298)
T ss_pred hcCCHHHHHHHHHHHhhccCcccCCCCChhhhchHHHHHHhcccc------------eee-----------cCCcCHHHH
Confidence 4667777 566666665555555544444444444311 111111 111 123555567
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhc
Q 023192 168 DKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINA 217 (286)
Q Consensus 168 ~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~ 217 (286)
++.+.+.......|..+++..|+.+++++++.|.-- -+.++..+++.
T Consensus 129 ~~~Va~s~i~lReg~~~ff~~L~~~~IP~~iFSAGi---gdiiEev~~q~ 175 (298)
T KOG3128|consen 129 DDIVAESNIALREGYEEFFEALQAHEIPLLIFSAGI---GDIIEEVTRQK 175 (298)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhCCCceEEEecch---HHHHHHHHHHH
Confidence 777777667777899999999999999999999876 45666666554
No 281
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=39.28 E-value=2.8e+02 Score=24.94 Aligned_cols=85 Identities=20% Similarity=0.152 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHHHCCCe---EEEEcCCc----hhhHHHHHHHHHhcCCCC-cceEEEcCCCCCCchHHHhHHHHHHh
Q 023192 176 SPAIEASLKLYEEVLGLGFK---IFLLTGRS----EKQRSITVDNLINAGVRY-WDKLILRSSDDHGKLAIIYKSEKRNE 247 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~---Ii~vTgR~----e~~r~~T~~~L~~~Gi~~-~~~Lilr~~~~~~Kp~~~yKs~~r~~ 247 (286)
-.-.|...++++.+++.|-+ +.++|.-- ..+-....+.+++.|++. |-++++-+.+..++....|-+.+...
T Consensus 10 ~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~ 89 (223)
T PF06415_consen 10 FFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEK 89 (223)
T ss_dssp GGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHH
Confidence 34445666677777665533 34566542 223455666677778763 56677766666666666666666666
Q ss_pred HhhcCC-eEEEEEc
Q 023192 248 MVQEGY-RILGNSG 260 (286)
Q Consensus 248 L~~~Gy-~i~~~IG 260 (286)
+.+.|. +|.-+.|
T Consensus 90 l~~~~~g~IAsv~G 103 (223)
T PF06415_consen 90 LAEIGIGRIASVSG 103 (223)
T ss_dssp HHHHTCTEEEEEEE
T ss_pred HHhhCCceEEEEec
Confidence 666554 4544444
No 282
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=39.19 E-value=1.7e+02 Score=22.22 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=16.1
Q ss_pred HHHHHHHHHHCCCeEEEEcCCchh
Q 023192 182 SLKLYEEVLGLGFKIFLLTGRSEK 205 (286)
Q Consensus 182 v~ell~~Lk~~G~~Ii~vTgR~e~ 205 (286)
...+++.|++.|++++++...++.
T Consensus 10 ~~~i~~~L~~~~~~vvvid~d~~~ 33 (116)
T PF02254_consen 10 GREIAEQLKEGGIDVVVIDRDPER 33 (116)
T ss_dssp HHHHHHHHHHTTSEEEEEESSHHH
T ss_pred HHHHHHHHHhCCCEEEEEECCcHH
Confidence 456666777766677777777643
No 283
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=39.11 E-value=2.8e+02 Score=26.45 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=53.3
Q ss_pred HHHCC-CeEEEEcCCchh--hHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe---EEEEEcC-
Q 023192 189 VLGLG-FKIFLLTGRSEK--QRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR---ILGNSGD- 261 (286)
Q Consensus 189 Lk~~G-~~Ii~vTgR~e~--~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~---i~~~IGD- 261 (286)
+++.| -+++++|++.-. ..+...+.|++.|+. +..+++. ..+..|+.... ......+.+.|.+ .++.||-
T Consensus 18 l~~~g~~rvlvVtd~~v~~~~~~~l~~~L~~~g~~-~~~~~~~-~~e~~k~~~~v-~~~~~~~~~~~~dr~~~IIAvGGG 94 (355)
T cd08197 18 LPELNADKYLLVTDSNVEDLYGHRLLEYLREAGAP-VELLSVP-SGEEHKTLSTL-SDLVERALALGATRRSVIVALGGG 94 (355)
T ss_pred HHhcCCCeEEEEECccHHHHHHHHHHHHHHhcCCc-eEEEEeC-CCCCCCCHHHH-HHHHHHHHHcCCCCCcEEEEECCc
Confidence 44445 678999987532 345667788888886 3333333 33333322111 2344555566776 7777886
Q ss_pred ChhhhccCC-----CCCcEEEecC
Q 023192 262 QWSDLLGSP-----MPSRSFKLPN 280 (286)
Q Consensus 262 q~sDl~ga~-----~g~r~fkLPN 280 (286)
...|+.+.- .|.+.+.+|.
T Consensus 95 sv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 95 VVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred HHHHHHHHHHHHhccCCCEEEecC
Confidence 558887652 3777777775
No 284
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=38.46 E-value=1.4e+02 Score=28.79 Aligned_cols=88 Identities=11% Similarity=0.021 Sum_probs=55.5
Q ss_pred CCeEEEEcCCchhh-----HHHHHHHHHhcCCCC--cceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe---EEEEEcC-
Q 023192 193 GFKIFLLTGRSEKQ-----RSITVDNLINAGVRY--WDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR---ILGNSGD- 261 (286)
Q Consensus 193 G~~Ii~vTgR~e~~-----r~~T~~~L~~~Gi~~--~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~---i~~~IGD- 261 (286)
+-+++++|.+.-.. .+...+.|++.|+.. +...+.-++++..|+....-......+.+.|.+ .++.+|=
T Consensus 30 ~~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG 109 (369)
T cd08198 30 RPKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGG 109 (369)
T ss_pred CCeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECCh
Confidence 46899999975322 256667788788531 234555666777776433233455566666665 6777774
Q ss_pred ChhhhccC-----CCCCcEEEecC
Q 023192 262 QWSDLLGS-----PMPSRSFKLPN 280 (286)
Q Consensus 262 q~sDl~ga-----~~g~r~fkLPN 280 (286)
...|+.|. ..|.+.+.+|.
T Consensus 110 ~v~D~ag~vA~~~~rGip~I~IPT 133 (369)
T cd08198 110 AVLDAVGYAAATAHRGVRLIRIPT 133 (369)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECC
Confidence 55788764 34778888885
No 285
>PHA00407 phage lambda Rz1-like protein
Probab=38.07 E-value=34 Score=25.68 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhhhhcccc
Q 023192 17 FRIVLLFSLCSLISRAFSHET 37 (286)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~ 37 (286)
.+|-||+--..++|||.|.+-
T Consensus 34 aLIGlllicv~tISGCaSes~ 54 (84)
T PHA00407 34 ALIGLLLICVATISGCASESN 54 (84)
T ss_pred HHHHHHHHHHHHHhhhhhccc
Confidence 455566666789999999844
No 286
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=37.96 E-value=2.8e+02 Score=26.45 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=51.8
Q ss_pred CCeEEEEcCCch--hhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCC----eEEEEEcC-Chhh
Q 023192 193 GFKIFLLTGRSE--KQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGY----RILGNSGD-QWSD 265 (286)
Q Consensus 193 G~~Ii~vTgR~e--~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy----~i~~~IGD-q~sD 265 (286)
+-+++++|++.- ...+...+.|++.|+. +..+++. ..+..|+.... ......+.+.|. ..++.||. ...|
T Consensus 26 ~~~~lvVtd~~v~~~~~~~v~~~l~~~g~~-~~~~v~~-~~e~~~s~~~v-~~~~~~l~~~~~~r~~d~IVaiGGG~v~D 102 (354)
T cd08199 26 SGRRFVVVDQNVDKLYGKKLREYFAHHNIP-LTILVLR-AGEAAKTMDTV-LKIVDALDAFGISRRREPVLAIGGGVLTD 102 (354)
T ss_pred CCeEEEEECccHHHHHHHHHHHHHHhcCCc-eEEEEeC-CCCCCCCHHHH-HHHHHHHHHcCCCCCCCEEEEECCcHHHH
Confidence 468899998753 2345677888888886 4433343 33333322222 233344555555 77888887 6788
Q ss_pred hccC-----CCCCcEEEecC
Q 023192 266 LLGS-----PMPSRSFKLPN 280 (286)
Q Consensus 266 l~ga-----~~g~r~fkLPN 280 (286)
+.++ ..|.+.+.+|.
T Consensus 103 ~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 103 VAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred HHHHHHHHhcCCCCEEEEcC
Confidence 8775 34777777775
No 287
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=37.91 E-value=87 Score=27.04 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHhhhhhhccC-CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 023192 112 DLERVSNEAGVYAKSVELRG-DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVL 190 (286)
Q Consensus 112 D~~~v~~~a~~y~~~~~~~~-~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk 190 (286)
+.+.+.+||..+++.++..+ .....+++|+...-.. +.+. ....+..++++++
T Consensus 65 ~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~~~~~---------------~~~~-----------~~~~~~~f~~~v~ 118 (196)
T cd06415 65 SVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQGSGN---------------SKAA-----------NTSAILAFMDTIK 118 (196)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEecCCCC---------------CHHH-----------HHHHHHHHHHHHH
Confidence 44566778887776665321 1123578999974210 1111 1135678899999
Q ss_pred HCCCeEEEEcCCc
Q 023192 191 GLGFKIFLLTGRS 203 (286)
Q Consensus 191 ~~G~~Ii~vTgR~ 203 (286)
+.|++.+|=|++.
T Consensus 119 ~~G~~~~iYt~~~ 131 (196)
T cd06415 119 DAGYKPMLYSYKP 131 (196)
T ss_pred HhCCCcEEEecHH
Confidence 8999999999986
No 288
>PRK13792 lysozyme inhibitor; Provisional
Probab=37.81 E-value=18 Score=29.74 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhhhcccc
Q 023192 18 RIVLLFSLCSLISRAFSHET 37 (286)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~ 37 (286)
|.+||.++.+||++|++...
T Consensus 5 l~~ll~~~~~lLsaCs~~~~ 24 (127)
T PRK13792 5 LWLLLAAVPVVLVACGGSDD 24 (127)
T ss_pred HHHHHHHHHhheecccCCCC
Confidence 56778888899999999855
No 289
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=37.78 E-value=28 Score=29.11 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhhhcc
Q 023192 20 VLLFSLCSLISRAFSH 35 (286)
Q Consensus 20 ~~~~~~~~~~~~~~~~ 35 (286)
++++++|.+|++|.|+
T Consensus 4 ~~~l~~~llL~gC~s~ 19 (146)
T TIGR03352 4 AVLLAACLLLAGCSSA 19 (146)
T ss_pred HHHHHHHHHHhhccCC
Confidence 4556677899999977
No 290
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=37.52 E-value=24 Score=20.54 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhhcc
Q 023192 19 IVLLFSLCSLISRAFSH 35 (286)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ 35 (286)
.+++++.+.+|++|--+
T Consensus 2 ~~~~~~~~~~LsgCG~K 18 (24)
T PF13627_consen 2 LLLLLALALALSGCGQK 18 (24)
T ss_pred hHHHHHHHHHHHhcccC
Confidence 35566778889999765
No 291
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=37.51 E-value=47 Score=23.01 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 023192 12 STMGLFRIVLLFSLCSLISRAFSH 35 (286)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~ 35 (286)
.-||++++.+++.+.+.||-+-|+
T Consensus 26 plM~~~m~lf~vfl~iiL~IyNss 49 (52)
T PF00737_consen 26 PLMGVFMALFAVFLLIILEIYNSS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 458999999999999999877654
No 292
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=37.45 E-value=43 Score=28.25 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=23.9
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
..+.+++.++.++++|.+++.+|+.+.
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~ 139 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDG 139 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 347899999999999999999999874
No 293
>PF06474 MLTD_N: MltD lipid attachment motif; InterPro: IPR010511 This entry represents the MltD lipid attachment domain. It is a short N-terminal domain found in membrane-bound lytic murein transglycosylase D (Mltd).
Probab=37.21 E-value=25 Score=22.21 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=8.7
Q ss_pred HHHHHHHhhhhc
Q 023192 23 FSLCSLISRAFS 34 (286)
Q Consensus 23 ~~~~~~~~~~~~ 34 (286)
+.++..|+||||
T Consensus 23 l~l~a~l~GCQS 34 (34)
T PF06474_consen 23 LALGALLVGCQS 34 (34)
T ss_pred HHHHHHHccccC
Confidence 345667899986
No 294
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=37.08 E-value=1.2e+02 Score=27.01 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=21.1
Q ss_pred CeEEEEEcCChhhhccCCCCCcEEEecCC
Q 023192 253 YRILGNSGDQWSDLLGSPMPSRSFKLPNP 281 (286)
Q Consensus 253 y~i~~~IGDq~sDl~ga~~g~r~fkLPNp 281 (286)
.+.+++|||+.+|+.........|...|.
T Consensus 194 ~~~~~a~GD~~ND~~Ml~~ag~~vam~Na 222 (256)
T TIGR01486 194 AIKVVGLGDSPNDLPLLEVVDLAVVVPGP 222 (256)
T ss_pred CceEEEEcCCHhhHHHHHHCCEEEEeCCC
Confidence 45789999999999876544455665553
No 295
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=36.96 E-value=45 Score=27.64 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
.+.+++.++.++++|.+++.+|+.+.
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35788999999999999999999874
No 296
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=36.48 E-value=18 Score=30.00 Aligned_cols=15 Identities=7% Similarity=0.095 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhhhc
Q 023192 20 VLLFSLCSLISRAFS 34 (286)
Q Consensus 20 ~~~~~~~~~~~~~~~ 34 (286)
+++.+|+.+|++|+.
T Consensus 4 l~~~LL~L~LsGCS~ 18 (133)
T PRK10781 4 LPICLLALMLTGCSM 18 (133)
T ss_pred HHHHHHHHHHhhccc
Confidence 344445556666654
No 297
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=36.47 E-value=12 Score=23.58 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=9.7
Q ss_pred hhcCCCCccCchhh
Q 023192 83 ANNLNPWKTIPREC 96 (286)
Q Consensus 83 ~nn~~~~~~vP~~c 96 (286)
-||+++++|+|+.-
T Consensus 9 gnni~~fkt~p~se 22 (38)
T PF09198_consen 9 GNNIQNFKTTPSSE 22 (38)
T ss_dssp SS--SSSSSHHHHH
T ss_pred CCceeceeecCccc
Confidence 37999999999744
No 298
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.20 E-value=2.5e+02 Score=23.17 Aligned_cols=82 Identities=10% Similarity=0.030 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHCCCeEEEEcCCchh---hHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEE
Q 023192 181 ASLKLYEEVLGLGFKIFLLTGRSEK---QRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILG 257 (286)
Q Consensus 181 gv~ell~~Lk~~G~~Ii~vTgR~e~---~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~ 257 (286)
...++++..++.+..++-+|+.... .-..+.+.|++.|+.. ..++..+...-+.++. ...+.++++.|+.-+.
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~-~~vivGG~~vi~~~d~---~~~~~~l~~~Gv~~vF 115 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEG-ILLYVGGNLVVGKQDF---PDVEKRFKEMGFDRVF 115 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCC-CEEEecCCcCcChhhh---HHHHHHHHHcCCCEEE
Confidence 3456667777888888888876432 2455677788888863 2344544321122111 2234556777876665
Q ss_pred EEcCChhhh
Q 023192 258 NSGDQWSDL 266 (286)
Q Consensus 258 ~IGDq~sDl 266 (286)
--|+.+.++
T Consensus 116 ~pgt~~~~i 124 (134)
T TIGR01501 116 APGTPPEVV 124 (134)
T ss_pred CcCCCHHHH
Confidence 555555554
No 299
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=35.84 E-value=54 Score=24.82 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 181 ASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 181 gv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
+++++.+.|.+.|++|+ .|+ -|.+.|+++|++
T Consensus 1 e~~~~a~~l~~lG~~i~-AT~-------gTa~~L~~~Gi~ 32 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIY-ATE-------GTAKFLKEHGIE 32 (95)
T ss_dssp THHHHHHHHHHTTSEEE-EEH-------HHHHHHHHTT--
T ss_pred CHHHHHHHHHHCCCEEE-ECh-------HHHHHHHHcCCC
Confidence 46788999999998875 443 367899999997
No 300
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=35.64 E-value=46 Score=28.40 Aligned_cols=62 Identities=16% Similarity=0.098 Sum_probs=42.2
Q ss_pred HHHHHHHhhhhhhccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHC-CC
Q 023192 116 VSNEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGL-GF 194 (286)
Q Consensus 116 v~~~a~~y~~~~~~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~-G~ 194 (286)
..+||..+++.++..+. ...+++|+.++--. +.+ .....+.+++++++++ |+
T Consensus 66 a~~qA~~f~~~~~~~~~-~~~~~lD~E~~~~~---------------~~~-----------~~~~~~~~f~~~v~~~~G~ 118 (184)
T cd06525 66 PEEQAENFYNTIKGKKM-DLKPALDVEVNFGL---------------SKD-----------ELNDYVLRFIEEFEKLSGL 118 (184)
T ss_pred HHHHHHHHHHhccccCC-CCCeEEEEecCCCC---------------CHH-----------HHHHHHHHHHHHHHHHHCC
Confidence 46799888877754322 23578899986311 011 1124678899999998 99
Q ss_pred eEEEEcCCch
Q 023192 195 KIFLLTGRSE 204 (286)
Q Consensus 195 ~Ii~vTgR~e 204 (286)
+++|=|+..-
T Consensus 119 ~~~iY~~~~~ 128 (184)
T cd06525 119 KVGIYTYTSF 128 (184)
T ss_pred CeEEEecHHH
Confidence 9999999863
No 301
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=35.52 E-value=47 Score=28.04 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchh
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEK 205 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~ 205 (286)
-.+.++++++.++++|.+++.+|+.+..
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4567889999999999999999998753
No 302
>PRK10329 glutaredoxin-like protein; Provisional
Probab=35.30 E-value=1.7e+02 Score=21.48 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=22.2
Q ss_pred eEEEEcCCchhhHHHHHHHHHhcCCCCcceE
Q 023192 195 KIFLLTGRSEKQRSITVDNLINAGVRYWDKL 225 (286)
Q Consensus 195 ~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~L 225 (286)
+|.+-|.....+-..+.+.|++.|++ |..+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~-~~~i 31 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFD-FEMI 31 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCc-eEEE
Confidence 46666777666667789999999997 6544
No 303
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=35.30 E-value=1e+02 Score=24.83 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=39.1
Q ss_pred HHHhHhhcCCCCccCchhhHHHHHhcccCCCccccHHHHHHHHHHhh-hhhhccCCCccEEEEe
Q 023192 78 RFAVEANNLNPWKTIPRECLEYVRDYMMGRGYGLDLERVSNEAGVYA-KSVELRGDGKDAWIFD 140 (286)
Q Consensus 78 ~~~ve~nn~~~~~~vP~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~-~~~~~~~~~~~avVfD 140 (286)
|+-.|++- +-..-|.+....++.-+.+..+..--..+. .|+.-+ +.....=.+.+|||||
T Consensus 30 ~le~~ls~--~Lpadp~qA~~~~~~rl~s~~~~~~q~~L~-~Ayqgv~~Aw~lgi~k~PAVVfD 90 (114)
T PF07511_consen 30 RLEAELSA--GLPADPQQAEAQARQRLQSPDWQQLQQQLA-QAYQGVVDAWSLGITKYPAVVFD 90 (114)
T ss_pred HHHHHHhc--cCCCChHHHHHHHHHHHcCccHHHHHHHHH-HHHHHHHHHHHhCccccCEEEEc
Confidence 45555553 345778999999999999999875444333 443332 3333444678999999
No 304
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=35.27 E-value=2.6e+02 Score=27.47 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=30.8
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCc
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRS 203 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~ 203 (286)
+.+-|-||=|+||.+--. .+. ...+.+|-.+ +|.++|++|.+||.--
T Consensus 146 ~L~LvTFDgDvTLY~DG~----------sl~----------~d~pvi~~ii----~LL~~gv~VgIVTAAG 192 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGA----------SLE----------PDNPVIPRII----KLLRRGVKVGIVTAAG 192 (408)
T ss_pred CceEEEEcCCcccccCCC----------CCC----------CCchHHHHHH----HHHhcCCeEEEEeCCC
Confidence 678899999999974311 111 1234444444 4457799999999864
No 305
>PRK13937 phosphoheptose isomerase; Provisional
Probab=34.65 E-value=49 Score=28.45 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
..+.+++.++.++++|.+++.+|+.+.
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 347899999999999999999999864
No 306
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=34.57 E-value=92 Score=26.72 Aligned_cols=69 Identities=9% Similarity=0.064 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHhhhhhhccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 023192 112 DLERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLG 191 (286)
Q Consensus 112 D~~~v~~~a~~y~~~~~~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~ 191 (286)
+.....+||..|++.++..+. ...+++|++.+-..+. ..+. ......+.++++++++
T Consensus 68 ~~~~a~~qA~~f~~~~~~~~~-~~~~~lD~E~~~~~~~-----------~~~~-----------~~~~~~~~~f~~~v~~ 124 (191)
T cd06414 68 TVAEAREEAEFVLRLIKGYKL-SYPVYYDLEDETQLGA-----------GLSK-----------DQRTDIANAFCETIEA 124 (191)
T ss_pred CHHHHHHHHHHHHHHhhccCC-CCCeEEEeecCCCCCC-----------CCCH-----------HHHHHHHHHHHHHHHH
Confidence 445567789888877764322 2246789987542110 0011 1233467888999999
Q ss_pred CCCeEEEEcCCc
Q 023192 192 LGFKIFLLTGRS 203 (286)
Q Consensus 192 ~G~~Ii~vTgR~ 203 (286)
.|++++|=|++.
T Consensus 125 ~G~~~~iY~~~~ 136 (191)
T cd06414 125 AGYYPGIYANLS 136 (191)
T ss_pred cCCCeEEEecHH
Confidence 999999999987
No 307
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=34.48 E-value=31 Score=29.79 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=21.2
Q ss_pred eEEEEEcCChhhhccCCCCCcEEEecCC
Q 023192 254 RILGNSGDQWSDLLGSPMPSRSFKLPNP 281 (286)
Q Consensus 254 ~i~~~IGDq~sDl~ga~~g~r~fkLPNp 281 (286)
+.+++|||+.+|+.........|.+.|.
T Consensus 166 ~~~i~~GD~~NDi~m~~~ag~~vam~Na 193 (225)
T TIGR01482 166 GETLVCGDSENDIDLFEVPGFGVAVANA 193 (225)
T ss_pred HHEEEECCCHhhHHHHHhcCceEEcCCh
Confidence 3588999999999887655556766663
No 308
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=34.34 E-value=2e+02 Score=21.60 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW 222 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~ 222 (286)
+.....+++.++++|.++.++.-++ ...+.|+..|+..+
T Consensus 57 i~~L~~~~~~~~~~g~~l~l~~~~~-----~v~~~l~~~gl~~~ 95 (106)
T TIGR02886 57 LGVILGRYKKIKNEGGEVIVCNVSP-----AVKRLFELSGLFKI 95 (106)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHhCCceE
Confidence 3345567888999999999877665 45677888898643
No 309
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=34.27 E-value=47 Score=22.48 Aligned_cols=17 Identities=24% Similarity=0.700 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023192 10 SISTMGLFRIVLLFSLC 26 (286)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (286)
.++.+|.|++++|+.++
T Consensus 6 ~~iilg~~ll~~LigiC 22 (49)
T PF05624_consen 6 VLIILGALLLLLLIGIC 22 (49)
T ss_pred eHHHHHHHHHHHHHHHH
Confidence 46788999999999886
No 310
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=33.88 E-value=48 Score=27.02 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=37.7
Q ss_pred ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCc
Q 023192 134 KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRS 203 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~ 203 (286)
.-.++|=+||+-+-.- .+.++...+++|...++++++++.|+++.+.+-.-
T Consensus 35 dV~iF~t~dG~~l~~K-------------------~~~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 35 DVTIFFTMDGVTLVKK-------------------KVAEKIKHPNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred ceEEEEEeccceeeee-------------------cchhhhcCCCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 3467789999877220 11123356888999999999999999999987654
No 311
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=33.62 E-value=1.1e+02 Score=24.61 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=38.1
Q ss_pred HHHhHhhcCCCCccCchhhHHHHHhcccCCCccccHHHHHHHHHHhh-hhhhccCCCccEEEEe
Q 023192 78 RFAVEANNLNPWKTIPRECLEYVRDYMMGRGYGLDLERVSNEAGVYA-KSVELRGDGKDAWIFD 140 (286)
Q Consensus 78 ~~~ve~nn~~~~~~vP~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~-~~~~~~~~~~~avVfD 140 (286)
|+-.|..- +-.+-|.+....+++.+.+.++.. .+.-...|+.-+ +.-...=.+.+|||||
T Consensus 31 rle~~ls~--~Lpadp~qA~~~~~~~l~sp~~~~-~q~~l~~Ayqgv~~Aw~lGi~k~PAVV~D 91 (113)
T TIGR03757 31 RLEAQLSA--GLPADPQQAAAQARQRLQSPDWAR-LQRRLAQAYQGVADAWQLGVTKIPAVVVD 91 (113)
T ss_pred HHHHHHhc--cCCCCHHHHHHHHHHHHcCccHHH-HHHHHHHHHHHHHHHHHcCCccCCEEEEc
Confidence 45555543 445779999999999999988754 333333444332 2223334668999999
No 312
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=33.58 E-value=2.6e+02 Score=26.73 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=42.2
Q ss_pred HHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcC-Chhhhc
Q 023192 189 VLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGD-QWSDLL 267 (286)
Q Consensus 189 Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGD-q~sDl~ 267 (286)
+++.|-+++++|++.....+...+.|++.|+. +. .+-. ..+... ... .......++.+.+.++.||- +.-|..
T Consensus 18 l~~~~~r~livtd~~~~~~~~v~~~L~~~g~~-~~-~~~~-~~~p~~-~~v--~~~~~~~~~~~~D~IIaiGGGS~~D~a 91 (374)
T cd08183 18 AAELGRRVLLVTGASSLRAAWLIEALRAAGIE-VT-HVVV-AGEPSV-ELV--DAAVAEARNAGCDVVIAIGGGSVIDAG 91 (374)
T ss_pred HHHcCCcEEEEECCchHHHHHHHHHHHHcCCe-EE-EecC-CCCcCH-HHH--HHHHHHHHhcCCCEEEEecCchHHHHH
Confidence 44447899999998654556677788888885 32 2211 111111 111 12233444567777777774 556665
Q ss_pred c
Q 023192 268 G 268 (286)
Q Consensus 268 g 268 (286)
.
T Consensus 92 K 92 (374)
T cd08183 92 K 92 (374)
T ss_pred H
Confidence 4
No 313
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=33.57 E-value=1.2e+02 Score=24.24 Aligned_cols=40 Identities=13% Similarity=-0.039 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
.+|...++++++++.|+.++.||..+ .....+++++.+++
T Consensus 47 ~~~~l~~~~~~~~~~~v~vi~vs~d~---~~~~~~~~~~~~~~ 86 (149)
T cd03018 47 ELCALRDSLELFEAAGAEVLGISVDS---PFSLRAWAEENGLT 86 (149)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCC---HHHHHHHHHhcCCC
Confidence 56677888888888999999998765 34567888888875
No 314
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.21 E-value=1.3e+02 Score=28.13 Aligned_cols=25 Identities=4% Similarity=-0.013 Sum_probs=20.8
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcC
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTG 201 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTg 201 (286)
..+|...+++++|+++|+++++...
T Consensus 70 ~~FPdp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 70 DRFPDPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeC
Confidence 4667888999999999999987443
No 315
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=33.13 E-value=56 Score=23.41 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHCCCeEEEEc
Q 023192 179 IEASLKLYEEVLGLGFKIFLLT 200 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vT 200 (286)
-+.+.++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 3578889999999999999999
No 316
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=33.12 E-value=2.8e+02 Score=26.26 Aligned_cols=78 Identities=17% Similarity=0.122 Sum_probs=44.2
Q ss_pred HHHHHCC-CeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcC-Chh
Q 023192 187 EEVLGLG-FKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGD-QWS 264 (286)
Q Consensus 187 ~~Lk~~G-~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGD-q~s 264 (286)
+.+++.| -++++||++.........+.|++.|+. + .+......+.. ...-......+++.+.+.++.||- +..
T Consensus 16 ~~~~~~g~~~~livtd~~~~~~~~~~~~l~~~~~~-~--~~~~~~~~~p~--~~~v~~~~~~~~~~~~D~IIavGGGs~~ 90 (367)
T cd08182 16 SLLKGLGGKRVLLVTGPRSAIASGLTDILKPLGTL-V--VVFDDVQPNPD--LEDLAAGIRLLREFGPDAVLAVGGGSVL 90 (367)
T ss_pred HHHHhcCCCeEEEEeCchHHHHHHHHHHHHHcCCe-E--EEEcCcCCCcC--HHHHHHHHHHHHhcCcCEEEEeCCcHHH
Confidence 3445556 579999998765556677888888864 2 22222111111 111122334455567788888886 557
Q ss_pred hhccC
Q 023192 265 DLLGS 269 (286)
Q Consensus 265 Dl~ga 269 (286)
|+..+
T Consensus 91 D~aK~ 95 (367)
T cd08182 91 DTAKA 95 (367)
T ss_pred HHHHH
Confidence 77543
No 317
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=32.89 E-value=61 Score=25.51 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 181 ASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 181 gv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
..+.+-+.|+++|+.|.+.|... .++.+.+.|++
T Consensus 14 P~lala~~L~~rGh~V~~~~~~~------~~~~v~~~Gl~ 47 (139)
T PF03033_consen 14 PFLALARALRRRGHEVRLATPPD------FRERVEAAGLE 47 (139)
T ss_dssp HHHHHHHHHHHTT-EEEEEETGG------GHHHHHHTT-E
T ss_pred HHHHHHHHHhccCCeEEEeeccc------ceecccccCce
Confidence 46678889999999999999976 23444788886
No 318
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=32.82 E-value=4.7e+02 Score=25.37 Aligned_cols=88 Identities=9% Similarity=0.074 Sum_probs=53.1
Q ss_pred CCeEEEEcCCchhh-----HHHHHHHHHhcCCCC--cceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe---EEEEEcC-
Q 023192 193 GFKIFLLTGRSEKQ-----RSITVDNLINAGVRY--WDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR---ILGNSGD- 261 (286)
Q Consensus 193 G~~Ii~vTgR~e~~-----r~~T~~~L~~~Gi~~--~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~---i~~~IGD- 261 (286)
+-++++||++.-.. .+...+.|++.|+.. ++..+.-..++..||.+..-......+.+.|.. .++.+|-
T Consensus 42 ~~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGG 121 (389)
T PRK06203 42 PKKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGG 121 (389)
T ss_pred CCeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCc
Confidence 47899999875322 245667777778742 344445556666666532223445556665654 7777775
Q ss_pred ChhhhccC-----CCCCcEEEecC
Q 023192 262 QWSDLLGS-----PMPSRSFKLPN 280 (286)
Q Consensus 262 q~sDl~ga-----~~g~r~fkLPN 280 (286)
...|+.++ ..|.+.+.+|.
T Consensus 122 sv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 122 AVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcC
Confidence 55788654 23667777775
No 319
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=32.56 E-value=1.9e+02 Score=20.89 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCC
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRY 221 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~ 221 (286)
..--..++.+.++++|.++.+..-++ ...+.|+..|+..
T Consensus 55 g~~~L~~l~~~~~~~g~~v~i~~~~~-----~~~~~l~~~gl~~ 93 (99)
T cd07043 55 GLGVLLGAYKRARAAGGRLVLVNVSP-----AVRRVLELTGLDR 93 (99)
T ss_pred hHHHHHHHHHHHHHcCCeEEEEcCCH-----HHHHHHHHhCcce
Confidence 34456678888999999977776654 3556777888764
No 320
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.21 E-value=3.2e+02 Score=23.37 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=51.4
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCC-eEEEEcCCchhhHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGF-KIFLLTGRSEKQRSIT 210 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~-~Ii~vTgR~e~~r~~T 210 (286)
.+++.|+|-+=|-...+ ....-+||-+++...++++|+ .|+.||=++ .-+.
T Consensus 36 ~gKkVvlf~lPGAFTPT-------------------------CS~~hlPgY~~~~d~f~~kGVD~I~cVSVND---~FVm 87 (165)
T COG0678 36 KGKKVVLFSLPGAFTPT-------------------------CSSSHLPGYLELADEFKAKGVDEIYCVSVND---AFVM 87 (165)
T ss_pred CCCEEEEEeCCCccCCC-------------------------cccccCccHHHHHHHHHHcCCceEEEEEeCc---HHHH
Confidence 56789999888865533 134568899999999999998 677788777 4567
Q ss_pred HHHHHhcCCCCcceEEEcCCC
Q 023192 211 VDNLINAGVRYWDKLILRSSD 231 (286)
Q Consensus 211 ~~~L~~~Gi~~~~~Lilr~~~ 231 (286)
..|=+..|..+ ++.+-++.
T Consensus 88 ~AWak~~g~~~--~I~fi~Dg 106 (165)
T COG0678 88 NAWAKSQGGEG--NIKFIPDG 106 (165)
T ss_pred HHHHHhcCCCc--cEEEecCC
Confidence 78999999874 44444443
No 321
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=32.18 E-value=78 Score=24.81 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCC---chhhHHHHHHHHHhcCCCCcc
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGR---SEKQRSITVDNLINAGVRYWD 223 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR---~e~~r~~T~~~L~~~Gi~~~~ 223 (286)
.+|...+++++++++|+.++.++.. .+...+...++++++|++ |.
T Consensus 41 ~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~-~p 88 (126)
T cd03012 41 TLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGIT-YP 88 (126)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCC-CC
Confidence 4677888888888889999988752 123366778899999996 54
No 322
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=31.71 E-value=80 Score=24.40 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 180 EASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 180 pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
+...++.+.|.+.|++++ .|.. |.++|++.|++
T Consensus 13 ~~~~~~~~~l~~~G~~l~-aT~g-------T~~~l~~~gi~ 45 (110)
T cd01424 13 PEAVEIAKRLAELGFKLV-ATEG-------TAKYLQEAGIP 45 (110)
T ss_pred hHHHHHHHHHHHCCCEEE-EchH-------HHHHHHHcCCe
Confidence 456778888889999996 4442 67889999986
No 323
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=31.71 E-value=75 Score=31.06 Aligned_cols=40 Identities=15% Similarity=0.323 Sum_probs=24.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC
Q 023192 3 FLLDSFRSISTMGLFRIVLLFSLCSLISRAFSHETVNAHNNH 44 (286)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (286)
|+.|.+-.++--+++.++|+++|+..+ |..||-+..-|+.
T Consensus 281 y~~d~~vtl~iPl~i~llL~llLs~Im--c~rREG~~~rd~~ 320 (386)
T PF05510_consen 281 YFPDFLVTLAIPLIIALLLLLLLSYIM--CCRREGVKKRDSK 320 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh--eechHHhhcchhc
Confidence 556665666655666666666666554 7788776544444
No 324
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.69 E-value=34 Score=30.75 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=14.6
Q ss_pred hhhhhhhhccchhHHHHhHh
Q 023192 64 NQLNEEVKLQCTTWRFAVEA 83 (286)
Q Consensus 64 ~~~~~~~~~~c~sw~~~ve~ 83 (286)
+...+....-|.|.||+.|-
T Consensus 82 rilinrArvecqShrlt~ed 101 (249)
T KOG0183|consen 82 RILINRARVECQSHRLTLED 101 (249)
T ss_pred eeehhhHhHhhhhhhcccCC
Confidence 44666778889999887663
No 325
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=31.69 E-value=1.3e+02 Score=23.49 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD 223 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~ 223 (286)
.++...++.+++++.|+.++.+|..+ .....+++++.|++ |.
T Consensus 42 ~~~~l~~~~~~~~~~~~~vv~is~d~---~~~~~~~~~~~~~~-~~ 83 (140)
T cd03017 42 EACDFRDLYEEFKALGAVVIGVSPDS---VESHAKFAEKYGLP-FP 83 (140)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHhCCC-ce
Confidence 35677778888888999999999755 45667888888885 53
No 326
>PRK10175 lipoprotein; Provisional
Probab=31.67 E-value=25 Score=26.24 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 023192 18 RIVLLFSLCSLISRAFSH 35 (286)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~ 35 (286)
+++|+..+...||+|.|-
T Consensus 2 ~~~~~~~~~~~lsGCgSi 19 (75)
T PRK10175 2 RLIVVSIMVTLLSGCGSI 19 (75)
T ss_pred eeHHHHHHHHHhccchhh
Confidence 456666677799999876
No 327
>COG4851 CamS Protein involved in sex pheromone biosynthesis [General function prediction only]
Probab=31.42 E-value=32 Score=32.54 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 023192 18 RIVLLFSLCSLISRAFSH 35 (286)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~ 35 (286)
|++++.++..|||+|++|
T Consensus 5 l~i~~ta~vliLs~C~~~ 22 (382)
T COG4851 5 LGIAATASVLILSGCFPF 22 (382)
T ss_pred hhHHHHHHHHHHhhccCc
Confidence 455667777899999998
No 328
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=30.69 E-value=2.4e+02 Score=21.31 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=40.8
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHH
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVD 212 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~ 212 (286)
+.+.+|+|+-|+-. .| ...+.-..++++.++.+|.++.++--++ ...+
T Consensus 40 ~~~~vvlDls~v~~---------------iD------------ssg~~~l~~~~~~~~~~g~~l~l~g~~~-----~v~~ 87 (109)
T cd07041 40 RARGVIIDLTGVPV---------------ID------------SAVARHLLRLARALRLLGARTILTGIRP-----EVAQ 87 (109)
T ss_pred CCCEEEEECCCCch---------------hc------------HHHHHHHHHHHHHHHHcCCeEEEEeCCH-----HHHH
Confidence 56789999988653 11 1233356678888999999999887765 3567
Q ss_pred HHHhcCCCC
Q 023192 213 NLINAGVRY 221 (286)
Q Consensus 213 ~L~~~Gi~~ 221 (286)
.|+..|+..
T Consensus 88 ~l~~~gl~~ 96 (109)
T cd07041 88 TLVELGIDL 96 (109)
T ss_pred HHHHhCCCh
Confidence 888889863
No 329
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.53 E-value=1.7e+02 Score=21.25 Aligned_cols=15 Identities=13% Similarity=-0.164 Sum_probs=10.9
Q ss_pred hhcCCeEEEEEcCCh
Q 023192 249 VQEGYRILGNSGDQW 263 (286)
Q Consensus 249 ~~~Gy~i~~~IGDq~ 263 (286)
.+.|+..++.+|++.
T Consensus 51 ~~~g~~~~iiiG~~e 65 (94)
T cd00861 51 DLIGIPYRIVVGKKS 65 (94)
T ss_pred HhcCCCEEEEECCch
Confidence 456788888888664
No 330
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=30.35 E-value=2.5e+02 Score=21.80 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEc
Q 023192 181 ASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSG 260 (286)
Q Consensus 181 gv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IG 260 (286)
-+.++.+.|+++|++|.++|.+.+. .+.....|+. ...+ ........+...+. .+++-+.+.+++++...+
T Consensus 12 ~~~~~~~~L~~~g~~V~ii~~~~~~-----~~~~~~~~i~-~~~~--~~~~k~~~~~~~~~-~l~k~ik~~~~DvIh~h~ 82 (139)
T PF13477_consen 12 FIYNLAKELKKRGYDVHIITPRNDY-----EKYEIIEGIK-VIRL--PSPRKSPLNYIKYF-RLRKIIKKEKPDVIHCHT 82 (139)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCc-----hhhhHhCCeE-EEEe--cCCCCccHHHHHHH-HHHHHhccCCCCEEEEec
Confidence 3667888999999999999997643 2333345554 1122 10111111222233 566677778898876655
Q ss_pred CCh
Q 023192 261 DQW 263 (286)
Q Consensus 261 Dq~ 263 (286)
=..
T Consensus 83 ~~~ 85 (139)
T PF13477_consen 83 PSP 85 (139)
T ss_pred CCh
Confidence 333
No 331
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=29.98 E-value=2.2e+02 Score=20.82 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=33.1
Q ss_pred EEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhc-CCe--EEEEEcCC
Q 023192 196 IFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQE-GYR--ILGNSGDQ 262 (286)
Q Consensus 196 Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~-Gy~--i~~~IGDq 262 (286)
|.+.|-+..-+-..+.+.|.+.|+. |..+.+..... +..+..+++. |.+ ..+++||+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~-~~~i~~~~~~~---------~~~~~~~~~~~g~~tvP~I~i~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVD-YEEIDVDDDEP---------EEAREMVKRGKGQRTVPQIFIGGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCC-cEEEEecCCcH---------HHHHHHHHHhCCCCCcCEEEECCE
Confidence 4444545455567789999999997 66655543321 1223333333 544 46778885
No 332
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=29.95 E-value=56 Score=26.52 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEcC
Q 023192 180 EASLKLYEEVLGLGFKIFLLTG 201 (286)
Q Consensus 180 pgv~ell~~Lk~~G~~Ii~vTg 201 (286)
|.+++.++..+++|.+++-+||
T Consensus 117 ~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 117 PNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeC
Confidence 6789999999999999999986
No 333
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=29.81 E-value=68 Score=27.81 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCchh
Q 023192 180 EASLKLYEEVLGLGFKIFLLTGRSEK 205 (286)
Q Consensus 180 pgv~ell~~Lk~~G~~Ii~vTgR~e~ 205 (286)
+.+++.++..+++|.+++-+|||+-.
T Consensus 123 ~nVl~Ai~~Ak~~gm~vI~ltG~~GG 148 (176)
T COG0279 123 KNVLKAIEAAKEKGMTVIALTGKDGG 148 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 68999999999999999999999854
No 334
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=29.59 E-value=41 Score=30.42 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=26.8
Q ss_pred CchHHHhHHHHHHhHhhcCCeEEEEEcCCh-hhhccC-CCCCcEEEe
Q 023192 234 GKLAIIYKSEKRNEMVQEGYRILGNSGDQW-SDLLGS-PMPSRSFKL 278 (286)
Q Consensus 234 ~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~-sDl~ga-~~g~r~fkL 278 (286)
+||.+.|.+.-.+.+-- ....+++|||.. .|+.|| ..|+|.+.+
T Consensus 180 GKP~~~fFe~al~~~gv-~p~~aVMIGDD~~dDvgGAq~~GMrgilV 225 (262)
T KOG3040|consen 180 GKPSPFFFESALQALGV-DPEEAVMIGDDLNDDVGGAQACGMRGILV 225 (262)
T ss_pred cCCCHHHHHHHHHhcCC-ChHHheEEccccccchhhHhhhcceeEEe
Confidence 67777664444444321 134688999988 455555 368887755
No 335
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=29.54 E-value=1.8e+02 Score=25.03 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHhhhhhhccCCC-ccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 023192 112 DLERVSNEAGVYAKSVELRGDG-KDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVL 190 (286)
Q Consensus 112 D~~~v~~~a~~y~~~~~~~~~~-~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk 190 (286)
......+||..+++.++..+-. ...+++|+...-.. ......+..++++++
T Consensus 68 ~~~~a~~eA~~f~~~~~~~~~~~~~~~~lD~E~~~~~----------------------------~~~~~~~~~F~~~v~ 119 (192)
T cd06522 68 SAADAQAEARYFANTAKSLGLSKNTVMVADMEDSSSS----------------------------GNATANVNAFWQTMK 119 (192)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCCceEEEeecCCCc----------------------------chHHHHHHHHHHHHH
Confidence 3455677888887776532222 23577899874210 112235678999999
Q ss_pred HCCC-eEEEEcCCc
Q 023192 191 GLGF-KIFLLTGRS 203 (286)
Q Consensus 191 ~~G~-~Ii~vTgR~ 203 (286)
++|+ +.++=|++.
T Consensus 120 ~~g~~~~~iY~~~~ 133 (192)
T cd06522 120 AAGYKNTDVYTSAS 133 (192)
T ss_pred HcCCCCcEEEccHH
Confidence 9998 777777764
No 336
>PRK04531 acetylglutamate kinase; Provisional
Probab=29.50 E-value=2e+02 Score=28.11 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=48.0
Q ss_pred HHHHHhhhhhhccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEE
Q 023192 118 NEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIF 197 (286)
Q Consensus 118 ~~a~~y~~~~~~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii 197 (286)
+++..|++..... ...+.+|+=|+|-++.. ..+...+-+..|++.|.+++
T Consensus 21 ~e~~~~l~~F~~~-~~~~~~VIKiGG~~l~~-----------------------------~~~~l~~dla~L~~~G~~~V 70 (398)
T PRK04531 21 KEISQYLKRFSQL-DAERFAVIKVGGAVLRD-----------------------------DLEALASSLSFLQEVGLTPI 70 (398)
T ss_pred hhhHHHHHHHhCc-CCCcEEEEEEChHHhhc-----------------------------CHHHHHHHHHHHHHCCCcEE
Confidence 3566666555432 22367888899987732 12455556677888899999
Q ss_pred EEcCCchhhHHHHHHHHHhcCCCC
Q 023192 198 LLTGRSEKQRSITVDNLINAGVRY 221 (286)
Q Consensus 198 ~vTgR~e~~r~~T~~~L~~~Gi~~ 221 (286)
+|=|-. ....+.|++.|++.
T Consensus 71 lVHGgg----pqI~~~l~~~gie~ 90 (398)
T PRK04531 71 VVHGAG----PQLDAELDAAGIEK 90 (398)
T ss_pred EEECCC----HHHHHHHHHcCCCc
Confidence 998874 45668899999974
No 337
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=29.39 E-value=2.3e+02 Score=29.66 Aligned_cols=129 Identities=17% Similarity=0.141 Sum_probs=71.7
Q ss_pred ccCCCccccHHHHHHHHHHhhhhhh----ccCCCccEEEEecCCCccCCc--hhhhh--hcCCCccCC------HHHHHH
Q 023192 104 MMGRGYGLDLERVSNEAGVYAKSVE----LRGDGKDAWIFDIDETLLSNL--PYYQE--HGYGLEIFN------PVEFDK 169 (286)
Q Consensus 104 ~~~~~Y~~D~~~v~~~a~~y~~~~~----~~~~~~~avVfDIDgTLl~n~--~~~~~--~~~g~~~f~------~~~~~~ 169 (286)
..+..|..+...+...+..+.+.+. ....++-..+.|+|=|++.+. +...+ .......+. ...++.
T Consensus 112 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~ 191 (635)
T KOG0323|consen 112 GRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNP 191 (635)
T ss_pred ccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhhhhhcccccccccccccceeecc
Confidence 3445676666666767777665432 122333588999999998542 11111 011111110 001110
Q ss_pred HHH--hcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCC
Q 023192 170 WVE--KAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDH 233 (286)
Q Consensus 170 wv~--~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~ 233 (286)
... ....+..|++.+|++++.+. +.+.+.|=-+..+.....+.|+--|.-.-++++.|..+..
T Consensus 192 ~~~~~~~~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~~ 256 (635)
T KOG0323|consen 192 LGHDTEYLVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESPF 256 (635)
T ss_pred cCCCceEEEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCCc
Confidence 000 01346779999999999865 8888888777555555556555545432267888876543
No 338
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=29.36 E-value=34 Score=25.47 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=17.2
Q ss_pred ccEEEEecCCCccCCchhhh
Q 023192 134 KDAWIFDIDETLLSNLPYYQ 153 (286)
Q Consensus 134 ~~avVfDIDgTLl~n~~~~~ 153 (286)
.-.++++-|||.+++..|+.
T Consensus 38 ~~~l~L~eDGT~VddEeyF~ 57 (74)
T smart00266 38 PVTLVLEEDGTIVDDEEYFQ 57 (74)
T ss_pred CcEEEEecCCcEEccHHHHh
Confidence 56899999999999988763
No 339
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=29.23 E-value=60 Score=22.16 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhh
Q 023192 17 FRIVLLFSLCSLISRA 32 (286)
Q Consensus 17 ~~~~~~~~~~~~~~~~ 32 (286)
.+|+++++++..|++|
T Consensus 7 ~~i~~~l~~~~~l~~C 22 (48)
T PRK10081 7 AAIFSVLVLSTVLTAC 22 (48)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3445556666679999
No 340
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=29.20 E-value=42 Score=29.09 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=20.6
Q ss_pred eEEEEEcCChhhhccCCCCCcEEEecC
Q 023192 254 RILGNSGDQWSDLLGSPMPSRSFKLPN 280 (286)
Q Consensus 254 ~i~~~IGDq~sDl~ga~~g~r~fkLPN 280 (286)
+.+++|||+.+|+.........|.+-|
T Consensus 174 ~~~i~~GD~~NDi~m~~~ag~~vam~N 200 (230)
T PRK01158 174 EEVAAIGDSENDLEMFEVAGFGVAVAN 200 (230)
T ss_pred HHEEEECCchhhHHHHHhcCceEEecC
Confidence 358999999999988765555666655
No 341
>PRK13938 phosphoheptose isomerase; Provisional
Probab=29.18 E-value=69 Score=28.03 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
-+.+++.++.++++|.+++.+|+.+.
T Consensus 126 t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 126 SMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999874
No 342
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=29.06 E-value=57 Score=28.63 Aligned_cols=27 Identities=15% Similarity=-0.101 Sum_probs=21.3
Q ss_pred EEEEEcCChhhhccCCCCCcEEEecCC
Q 023192 255 ILGNSGDQWSDLLGSPMPSRSFKLPNP 281 (286)
Q Consensus 255 i~~~IGDq~sDl~ga~~g~r~fkLPNp 281 (286)
.+++|||..+|+.........|.+.|.
T Consensus 177 ~~i~~GD~~nD~~ml~~~~~~iav~na 203 (236)
T TIGR02471 177 QILVAGDSGNDEEMLRGLTLGVVVGNH 203 (236)
T ss_pred HEEEEcCCccHHHHHcCCCcEEEEcCC
Confidence 678899999999887655567777664
No 343
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=29.06 E-value=41 Score=25.32 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=17.8
Q ss_pred CccEEEEecCCCccCCchhhh
Q 023192 133 GKDAWIFDIDETLLSNLPYYQ 153 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~ 153 (286)
+.-.++++-|||.+++..|+.
T Consensus 39 ~~~~lvL~eDGT~Vd~EeyF~ 59 (78)
T cd06539 39 GLVTLVLEEDGTVVDTEEFFQ 59 (78)
T ss_pred CCcEEEEeCCCCEEccHHHHh
Confidence 357899999999999988764
No 344
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=29.03 E-value=4.5e+02 Score=24.56 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=26.5
Q ss_pred HHHHHHHHHHCC-CeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 182 SLKLYEEVLGLG-FKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 182 v~ell~~Lk~~G-~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
..++++.+++.+ .+-+.+..|++.......+.|+++|+.
T Consensus 90 ~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~ 129 (313)
T TIGR01210 90 RNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVN 129 (313)
T ss_pred HHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCC
Confidence 456666776665 445566678877666667778888874
No 345
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.61 E-value=1.3e+02 Score=30.86 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=39.2
Q ss_pred HHHHHHHHHHCCCeEEEEcCCchhh---------------------HHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHh
Q 023192 182 SLKLYEEVLGLGFKIFLLTGRSEKQ---------------------RSITVDNLINAGVRYWDKLILRSSDDHGKLAIIY 240 (286)
Q Consensus 182 v~ell~~Lk~~G~~Ii~vTgR~e~~---------------------r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~y 240 (286)
+--+.+.++-+|..++||||-+|+- ...-.+.++.+++. ||. +.|..++..+ ..
T Consensus 31 ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~Is-fD~-F~rTt~~~h~---~~ 105 (558)
T COG0143 31 ADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNIS-FDN-FIRTTSPEHK---EL 105 (558)
T ss_pred HHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCc-ccc-cccCCCHHHH---HH
Confidence 3445567788899999999998752 11223344455664 443 4454443322 22
Q ss_pred HHHHHHhHhhcCC
Q 023192 241 KSEKRNEMVQEGY 253 (286)
Q Consensus 241 Ks~~r~~L~~~Gy 253 (286)
-......|.+.|+
T Consensus 106 vq~~f~~L~~~G~ 118 (558)
T COG0143 106 VQEFFLKLYENGD 118 (558)
T ss_pred HHHHHHHHHHCCC
Confidence 3466677777764
No 346
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=28.48 E-value=82 Score=29.65 Aligned_cols=46 Identities=26% Similarity=0.210 Sum_probs=32.8
Q ss_pred CCcccHHHHHHHHHHHHCC-CeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEc
Q 023192 175 MSPAIEASLKLYEEVLGLG-FKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILR 228 (286)
Q Consensus 175 ~~~~~pgv~ell~~Lk~~G-~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr 228 (286)
+...+|..-++++.+++.| +++++|||-+ . .+.++++..+ +.+++.
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgs---l---pdv~~~L~~~--dql~~s 136 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGS---L---PDVLEELKLP--DQLYVS 136 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCC---h---HHHHHHhccC--CEEEEE
Confidence 4567788889999999999 7999999998 3 3444444433 445444
No 347
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=28.38 E-value=1.7e+02 Score=24.84 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=35.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhh
Q 023192 183 LKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQ 250 (286)
Q Consensus 183 ~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~ 250 (286)
.++++.+++.|++++++|..+..-.+...++|+. . ..+++.+.+ ..|+.+.+.|..
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~---k--~~vl~G~SG-------vGKSSLiN~L~~ 57 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG---K--TSVLLGQSG-------VGKSSLINALLP 57 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT---S--EEEEECSTT-------SSHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC---C--EEEEECCCC-------CCHHHHHHHHHh
Confidence 3567788899999999999876555555555544 1 234555444 246777777764
No 348
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=27.76 E-value=48 Score=27.52 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 023192 13 TMGLFRIVLLFSLCSLISRAFS 34 (286)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~ 34 (286)
.+-+++++|+++.|++|++=..
T Consensus 3 ~l~~~LL~L~LsGCS~l~~tp~ 24 (133)
T PRK10781 3 ALPICLLALMLTGCSMLSRSPV 24 (133)
T ss_pred hHHHHHHHHHHhhccccCcCCC
Confidence 3567899999999999998554
No 349
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=27.50 E-value=45 Score=25.29 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=17.9
Q ss_pred CccEEEEecCCCccCCchhhh
Q 023192 133 GKDAWIFDIDETLLSNLPYYQ 153 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~ 153 (286)
..-.++++-|||.+++..|+.
T Consensus 38 ~~~~lvLeeDGT~Vd~EeyF~ 58 (81)
T cd06537 38 GVLTLVLEEDGTAVDSEDFFE 58 (81)
T ss_pred CceEEEEecCCCEEccHHHHh
Confidence 457899999999999988774
No 350
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=27.37 E-value=4.1e+02 Score=26.96 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=53.2
Q ss_pred HHHHCCCeEEEEcCCch-hhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcC---CeEEEEEcC-C
Q 023192 188 EVLGLGFKIFLLTGRSE-KQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEG---YRILGNSGD-Q 262 (286)
Q Consensus 188 ~Lk~~G~~Ii~vTgR~e-~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~G---y~i~~~IGD-q 262 (286)
.+++.|.+++++|.... .+.+...+.|++.|+..+ ..+. ++.+..|+..... .....+.+.| ...++.+|- .
T Consensus 204 ~l~~~g~k~~iV~d~~v~~~~~~l~~~L~~~g~~v~-~~v~-p~~E~~ksl~~v~-~~~~~l~~~~~~r~D~IIAIGGGs 280 (542)
T PRK14021 204 VLGPKPVKVALIHTQPVQRHSDRARTLLRQGGYEVS-DIVI-PDAEAGKTIEVAN-GIWQRLGNEGFTRSDAIVGLGGGA 280 (542)
T ss_pred HHHhcCCeEEEEECccHHHHHHHHHHHHHhCCCceE-EEEe-CCCcccCCHHHHH-HHHHHHHhcCCCCCcEEEEEcChH
Confidence 35556777877776543 234566778888898633 3333 3344334332222 2233344443 567777887 6
Q ss_pred hhhhccC-----CCCCcEEEecC
Q 023192 263 WSDLLGS-----PMPSRSFKLPN 280 (286)
Q Consensus 263 ~sDl~ga-----~~g~r~fkLPN 280 (286)
..|+.+. ..|.+.+.+|.
T Consensus 281 v~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 281 ATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCC
Confidence 6888775 25889999887
No 351
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=27.28 E-value=1.1e+02 Score=25.76 Aligned_cols=44 Identities=9% Similarity=-0.034 Sum_probs=28.3
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
.+--|..-.++..++.|.++.++--....-.....+||.++++.
T Consensus 74 ~l~GGt~lT~~~a~~~~KP~l~i~~~~~~~~~~v~~wl~~~~i~ 117 (145)
T PF12694_consen 74 ELTGGTALTVEFARKHGKPCLHIDLSIPEAAAAVAEWLREHNIR 117 (145)
T ss_dssp S--HHHHHHHHHHHHTT--EEEETS-HHHHHHHHHHHHHHTT--
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHHHHCCce
Confidence 44457777788888999999888444434467788999999985
No 352
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=27.26 E-value=72 Score=22.95 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 023192 12 STMGLFRIVLLFSLCSLISRAFSH 35 (286)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~ 35 (286)
.-||+++.++++.+.+.||---|+
T Consensus 29 plMgv~m~Lf~vFl~iiLeIYNsS 52 (64)
T PRK02624 29 PVMAVFMVLFLVFLLIILQIYNQS 52 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcc
Confidence 358888888888888888755443
No 353
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.22 E-value=1.7e+02 Score=20.21 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=26.0
Q ss_pred HHHHHHHHHHCCCeEEEEcCCchhh-HHHHHHHHHhcCCC
Q 023192 182 SLKLYEEVLGLGFKIFLLTGRSEKQ-RSITVDNLINAGVR 220 (286)
Q Consensus 182 v~ell~~Lk~~G~~Ii~vTgR~e~~-r~~T~~~L~~~Gi~ 220 (286)
..++++.++++|++.+.+|....-. .....+..++.|++
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~ 56 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIK 56 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCe
Confidence 5678889999999999999986321 22333444455554
No 354
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=27.02 E-value=4.6e+02 Score=24.83 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=43.7
Q ss_pred HHHHHCCCeEEEEcCCch-h---hHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcC-
Q 023192 187 EEVLGLGFKIFLLTGRSE-K---QRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGD- 261 (286)
Q Consensus 187 ~~Lk~~G~~Ii~vTgR~e-~---~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGD- 261 (286)
+.+++.|.++++||++.. . ..+...+.|++.|+. +. ++ .+...+ |...--....+.+++.+.+.++.||-
T Consensus 19 ~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~-~~-~~-~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 93 (357)
T cd08181 19 EELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIE-YE-IF-DEVEEN--PSLETIMEAVEIAKKFNADFVIGIGGG 93 (357)
T ss_pred HHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCe-EE-Ee-CCCCCC--cCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 345666889999999764 2 235677888888885 32 22 111111 11111123344455667787777874
Q ss_pred Chhhhcc
Q 023192 262 QWSDLLG 268 (286)
Q Consensus 262 q~sDl~g 268 (286)
+.-|...
T Consensus 94 SviD~aK 100 (357)
T cd08181 94 SPLDAAK 100 (357)
T ss_pred hHHHHHH
Confidence 5567654
No 355
>PF12092 DUF3568: Protein of unknown function (DUF3568); InterPro: IPR021952 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 130 amino acids in length.
Probab=26.63 E-value=49 Score=27.28 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhh
Q 023192 16 LFRIVLLFSLCSLISRA 32 (286)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (286)
+++++|+.+.+..|+||
T Consensus 3 l~~~~l~~~~~l~L~sC 19 (131)
T PF12092_consen 3 LLLIALFILSTLSLSSC 19 (131)
T ss_pred cHHHHHHHHHHHHHhhh
Confidence 46777887888999999
No 356
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=26.60 E-value=2.2e+02 Score=23.30 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=36.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCCchhh-------HHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe
Q 023192 182 SLKLYEEVLGLGFKIFLLTGRSEKQ-------RSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR 254 (286)
Q Consensus 182 v~ell~~Lk~~G~~Ii~vTgR~e~~-------r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~ 254 (286)
+..+.+.++..|+++.++..|++.. ............++.+..++|..+.. . +. ..++..| +.+..
T Consensus 10 a~al~~la~~lg~~v~v~d~r~e~~~~~~~~~~~~~~~~~~~~~~~~~t~Vv~th~h~--~-D~---~~L~~~l-~~~~~ 82 (136)
T PF13478_consen 10 ARALARLAALLGFRVTVVDPRPERFPEADEVICIPPDDILEDLEIDPNTAVVMTHDHE--L-DA---EALEAAL-ASPAR 82 (136)
T ss_dssp HHHHHHHHHHCTEEEEEEES-CCC-TTSSEEECSHHHHHHHHC-S-TT-EEE--S-CC--C-HH---HHHHHHT-TSS-S
T ss_pred HHHHHHHHHhCCCEEEEEcCCccccCCCCccEecChHHHHhccCCCCCeEEEEcCCch--h-HH---HHHHHHH-cCCCC
Confidence 5667778889999999999998621 22334444566776666666654332 1 21 1223333 23455
Q ss_pred EEEEEcC
Q 023192 255 ILGNSGD 261 (286)
Q Consensus 255 i~~~IGD 261 (286)
-++++|-
T Consensus 83 YiG~lGS 89 (136)
T PF13478_consen 83 YIGLLGS 89 (136)
T ss_dssp EEEESS-
T ss_pred EEEeecC
Confidence 6666664
No 357
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=26.53 E-value=47 Score=24.98 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.4
Q ss_pred CCccEEEEecCCCccCCchhhh
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQ 153 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~ 153 (286)
+..-.++++-|||.+++..|+.
T Consensus 38 ~~~~~lvL~eDGTeVddEeYF~ 59 (78)
T cd01615 38 SAPVTLVLEEDGTEVDDEEYFQ 59 (78)
T ss_pred CCCeEEEEeCCCcEEccHHHHh
Confidence 4556899999999999988874
No 358
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=26.46 E-value=1.3e+02 Score=28.26 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=18.7
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEc
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLT 200 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vT 200 (286)
.+|...++++.|+++|+++++..
T Consensus 62 ~FPdp~~~i~~l~~~g~k~~~~~ 84 (317)
T cd06600 62 RFPEPKKLIDELHKRNVKLVTIV 84 (317)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEe
Confidence 45677899999999999988654
No 359
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=26.29 E-value=41 Score=29.97 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=12.3
Q ss_pred cEEEEecCCCccCC
Q 023192 135 DAWIFDIDETLLSN 148 (286)
Q Consensus 135 ~avVfDIDgTLl~n 148 (286)
++|++||.||+.+-
T Consensus 2 ~~~l~diegt~~~i 15 (220)
T TIGR01691 2 KNVLLDIEGTTGSI 15 (220)
T ss_pred CEEEEecCCCcccH
Confidence 68999999999864
No 360
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=26.27 E-value=1.5e+02 Score=25.45 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=39.6
Q ss_pred HHHHHHHhhhhhhccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHC-CC
Q 023192 116 VSNEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGL-GF 194 (286)
Q Consensus 116 v~~~a~~y~~~~~~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~-G~ 194 (286)
..+||..|++.++....+...+++|+++.-..+. . ......+..|+++++++ |+
T Consensus 70 a~~qA~~f~~~~~~~~~~~~~~~lDvE~~~~~~~--------------~-----------~~~~~~~~~f~~~v~~~~g~ 124 (194)
T cd06524 70 PKQQADNFLNTVKLLGPGDLPPVLDVEWDGRKSS--------------A-----------KQIQEGVLEWLDAVEKATGV 124 (194)
T ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCCC--------------H-----------HHHHHHHHHHHHHHHHHHCC
Confidence 3568887777665422222345799988532110 0 11234678888988765 89
Q ss_pred eEEEEcCCc
Q 023192 195 KIFLLTGRS 203 (286)
Q Consensus 195 ~Ii~vTgR~ 203 (286)
++.+=|++.
T Consensus 125 ~~~iY~~~~ 133 (194)
T cd06524 125 KPIIYTNPS 133 (194)
T ss_pred CeEEEEcHH
Confidence 999999875
No 361
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=26.18 E-value=45 Score=26.15 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhhhccc
Q 023192 19 IVLLFSLCSLISRAFSHE 36 (286)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ 36 (286)
++|...++++|+||.+-.
T Consensus 4 ~ll~~~lallLtgCatqt 21 (97)
T PF06291_consen 4 LLLAAALALLLTGCATQT 21 (97)
T ss_pred HHHHHHHHHHHcccceeE
Confidence 345556778999998763
No 362
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=26.10 E-value=83 Score=27.23 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
.+.+++.++.++++|.+++.+|+.+.
T Consensus 124 t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 124 SGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 36888999999999999999999864
No 363
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=26.09 E-value=3.4e+02 Score=21.69 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=44.7
Q ss_pred HHHHHHCCCeEEEEcCCch-----hhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEc
Q 023192 186 YEEVLGLGFKIFLLTGRSE-----KQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSG 260 (286)
Q Consensus 186 l~~Lk~~G~~Ii~vTgR~e-----~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IG 260 (286)
++.+++...+.+++||-.. .......++|.+.|++ -+.+++-+.... ...--...+..+.+.|.+-+..|-
T Consensus 27 ~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~-~~~I~~e~~s~~---T~ena~~~~~~~~~~~~~~i~lVT 102 (150)
T cd06259 27 AELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVP-AEAILLEDRSTN---TYENARFSAELLRERGIRSVLLVT 102 (150)
T ss_pred HHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCC-HHHeeecCCCCC---HHHHHHHHHHHHHhcCCCeEEEEC
Confidence 3344454578889998743 2467888999999997 455665443221 111111233445556666677777
Q ss_pred CChhhh
Q 023192 261 DQWSDL 266 (286)
Q Consensus 261 Dq~sDl 266 (286)
|.+.=-
T Consensus 103 s~~H~~ 108 (150)
T cd06259 103 SAYHMP 108 (150)
T ss_pred CHHHHH
Confidence 766433
No 364
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=26.04 E-value=91 Score=28.93 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCC
Q 023192 180 EASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRY 221 (286)
Q Consensus 180 pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~ 221 (286)
+.+.-|+..|++.|-.|.+.++++-...+.+...|.+.|++.
T Consensus 54 ~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V 95 (268)
T PF05221_consen 54 AKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPV 95 (268)
T ss_dssp HHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceE
Confidence 466778899999999999999999878888899999999974
No 365
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=25.79 E-value=2.3e+02 Score=22.85 Aligned_cols=41 Identities=5% Similarity=-0.064 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcc
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWD 223 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~ 223 (286)
.+...++.+.++++|+.++-+|-.+ .....+++++.|++ |.
T Consensus 50 ~~~l~~~~~~~~~~~v~vi~Is~d~---~~~~~~~~~~~~~~-~~ 90 (154)
T PRK09437 50 ACGLRDNMDELKKAGVVVLGISTDK---PEKLSRFAEKELLN-FT 90 (154)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHhCCC-Ce
Confidence 3456678888889999999998754 46677889999986 54
No 366
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=25.70 E-value=52 Score=26.11 Aligned_cols=16 Identities=13% Similarity=-0.074 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhhcc
Q 023192 20 VLLFSLCSLISRAFSH 35 (286)
Q Consensus 20 ~~~~~~~~~~~~~~~~ 35 (286)
+++++++++|++|++.
T Consensus 8 ~~~~~~~~~LsgCs~~ 23 (113)
T PRK11548 8 AAAAVLLMLTAGCSTL 23 (113)
T ss_pred HHHHHHHHHHcccCCC
Confidence 3344455788999875
No 367
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.64 E-value=66 Score=25.00 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 023192 16 LFRIVLLFSLCSLISRAFS 34 (286)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~ 34 (286)
+|++.|||++..++||-.+
T Consensus 6 ~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3444444445555555443
No 368
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=25.63 E-value=53 Score=24.84 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=17.9
Q ss_pred CccEEEEecCCCccCCchhhh
Q 023192 133 GKDAWIFDIDETLLSNLPYYQ 153 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~ 153 (286)
+.-.++++-|||.+++..|+.
T Consensus 41 ~~~~lvL~eDGT~VddEeyF~ 61 (80)
T cd06536 41 APITLVLAEDGTIVEDEDYFL 61 (80)
T ss_pred CceEEEEecCCcEEccHHHHh
Confidence 467899999999999988764
No 369
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.58 E-value=87 Score=27.17 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
-+.++++++.++++|.+++.+|+.+.
T Consensus 124 t~~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 124 SANVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 35788999999999999999999864
No 370
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=25.50 E-value=1.6e+02 Score=29.07 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=47.8
Q ss_pred HHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCC-chHHHhHHHHHHhHhhcCCeEEEEEc
Q 023192 182 SLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHG-KLAIIYKSEKRNEMVQEGYRILGNSG 260 (286)
Q Consensus 182 v~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~-Kp~~~yKs~~r~~L~~~Gy~i~~~IG 260 (286)
--.+++.|+++|+++-+.+..++. -.|.+.|-..|++|++=+...+. .+.. ......+....|-+|.+..+
T Consensus 14 yS~Ff~~L~~rg~~l~~~~~~d~~------l~L~~~ge~~YD~LIif~~~~k~~g~~l--s~~~ll~Fvd~GgNilv~~s 85 (423)
T PF03345_consen 14 YSTFFNSLKERGYELTFKSADDES------LSLFKYGERLYDHLIIFPPSVKEFGGSL--SPKTLLDFVDNGGNILVAGS 85 (423)
T ss_pred HHHHHHHHHhCCCEEEEecCCCCC------cchhhCChhhcceEEEeCCcccccCCCC--CHHHHHHHHhCCCcEEEEeC
Confidence 557889999999999999998732 35788899889998776643221 1111 12334445566777766544
Q ss_pred CC
Q 023192 261 DQ 262 (286)
Q Consensus 261 Dq 262 (286)
-+
T Consensus 86 ~~ 87 (423)
T PF03345_consen 86 SD 87 (423)
T ss_pred CC
Confidence 44
No 371
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=25.46 E-value=1.2e+02 Score=29.92 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW 222 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~ 222 (286)
..+.+.-++..|++.|-.|.+.+.++-..++.+...|.+.|++.|
T Consensus 41 l~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~ 85 (406)
T TIGR00936 41 VTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVF 85 (406)
T ss_pred chHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEE
Confidence 345677888899999999999999988788899999999999853
No 372
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=25.42 E-value=2.3e+02 Score=19.82 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=15.7
Q ss_pred cCCchhhHHHHHHHHHhcCCCCcce
Q 023192 200 TGRSEKQRSITVDNLINAGVRYWDK 224 (286)
Q Consensus 200 TgR~e~~r~~T~~~L~~~Gi~~~~~ 224 (286)
|......-..+.++|++.|++ |..
T Consensus 5 ~~~~Cp~C~~ak~~L~~~~i~-~~~ 28 (72)
T TIGR02194 5 SKNNCVQCKMTKKALEEHGIA-FEE 28 (72)
T ss_pred eCCCCHHHHHHHHHHHHCCCc-eEE
Confidence 333333445678999999997 544
No 373
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=25.40 E-value=1.4e+02 Score=24.48 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=18.0
Q ss_pred HHHH-HHHHHHHHCCCeEEEEcCCc
Q 023192 180 EASL-KLYEEVLGLGFKIFLLTGRS 203 (286)
Q Consensus 180 pgv~-ell~~Lk~~G~~Ii~vTgR~ 203 (286)
+|++ ..++-|.+.|+.||.+|.=+
T Consensus 77 tGilasV~~pLsd~gigIFavStyd 101 (128)
T COG3603 77 TGILASVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred chhhhhhhhhHhhCCccEEEEEecc
Confidence 3443 45677899999999999754
No 374
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=25.38 E-value=90 Score=27.33 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
-+.+++.++.++++|.+++.+||.+.
T Consensus 122 s~~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 122 SRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35788999999999999999999874
No 375
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=25.36 E-value=1.2e+02 Score=28.60 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcC
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTG 201 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTg 201 (286)
..+|...+++++|+++|+++++...
T Consensus 61 ~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 61 KKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEec
Confidence 3467778899999999999887654
No 376
>PRK10658 putative alpha-glucosidase; Provisional
Probab=25.33 E-value=1.7e+02 Score=30.63 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=27.5
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCC
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGV 219 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi 219 (286)
.-+|.-.+++++|+++|+++++...-.-.+....-+...+.|+
T Consensus 322 ~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy 364 (665)
T PRK10658 322 RTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGY 364 (665)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCe
Confidence 3466778899999999999998766432222223333445554
No 377
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=25.27 E-value=2.7e+02 Score=20.80 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=37.9
Q ss_pred CccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHH
Q 023192 133 GKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVD 212 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~ 212 (286)
+.+.+++|+.+.-. .| ...+.-..++.+.++++|..+.++.-++ ...+
T Consensus 42 ~~~~vvidls~v~~---------------iD------------ssgl~~L~~~~~~~~~~~~~~~l~~~~~-----~~~~ 89 (108)
T TIGR00377 42 GPRPIVLDLEDLEF---------------MD------------SSGLGVLLGRYKQVRRVGGQLVLVSVSP-----RVAR 89 (108)
T ss_pred CCCeEEEECCCCeE---------------Ec------------cccHHHHHHHHHHHHhcCCEEEEEeCCH-----HHHH
Confidence 56789999988543 11 2233345567778889998877666554 4567
Q ss_pred HHHhcCCCC
Q 023192 213 NLINAGVRY 221 (286)
Q Consensus 213 ~L~~~Gi~~ 221 (286)
.|+..|+..
T Consensus 90 ~l~~~~l~~ 98 (108)
T TIGR00377 90 LLDITGLLR 98 (108)
T ss_pred HHHHhChhh
Confidence 778888864
No 378
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=25.25 E-value=51 Score=24.87 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.8
Q ss_pred CccEEEEecCCCccCCchhhh
Q 023192 133 GKDAWIFDIDETLLSNLPYYQ 153 (286)
Q Consensus 133 ~~~avVfDIDgTLl~n~~~~~ 153 (286)
....++++-|||.+++..|+.
T Consensus 38 ~~~~lvL~eDGT~Vd~EeyF~ 58 (79)
T cd06538 38 CISSLVLDEDGTGVDTEEFFQ 58 (79)
T ss_pred CccEEEEecCCcEEccHHHHh
Confidence 357899999999999988874
No 379
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=25.08 E-value=2.9e+02 Score=29.59 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=19.9
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCc
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRS 203 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~ 203 (286)
++.-..+..-++.|+..|++|..+||-.
T Consensus 657 DkLQ~dVk~tLElLRNAgikiWMLTGDK 684 (1051)
T KOG0210|consen 657 DKLQDDVKPTLELLRNAGIKIWMLTGDK 684 (1051)
T ss_pred HHHhhhhHhHHHHHhhcCcEEEEEcCcc
Confidence 4444566666777888888888888854
No 380
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=24.97 E-value=2.1e+02 Score=20.42 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=25.1
Q ss_pred HHHHHHHHHHCCCeEEEEcCCchh-------hHHHHHHHHHhcCCC
Q 023192 182 SLKLYEEVLGLGFKIFLLTGRSEK-------QRSITVDNLINAGVR 220 (286)
Q Consensus 182 v~ell~~Lk~~G~~Ii~vTgR~e~-------~r~~T~~~L~~~Gi~ 220 (286)
..++...|.+.|.++.++..++.- .+....++|++.|+.
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~ 56 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVE 56 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCE
Confidence 456677778888888888887632 244445555555553
No 381
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=24.91 E-value=1.2e+02 Score=29.78 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCc
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW 222 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~ 222 (286)
-+.+.-++..|++.|-.|.+.+.++-..++.+...|.+.|++.|
T Consensus 46 ~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v~ 89 (413)
T cd00401 46 TVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIPVF 89 (413)
T ss_pred hHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCceEE
Confidence 34677788899999999999999988888999999999999843
No 382
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=24.88 E-value=61 Score=26.39 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhhccccccccC
Q 023192 22 LFSLCSLISRAFSHETVNAHN 42 (286)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~ 42 (286)
|+..+.||-||.||.-++.-|
T Consensus 7 ~~l~~~lLvGCsS~~~i~~~~ 27 (123)
T COG5633 7 LSLALLLLVGCSSHQEILVND 27 (123)
T ss_pred HHHHHHHhhccCCCCCccccc
Confidence 445555677999997655544
No 383
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=24.81 E-value=89 Score=21.03 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023192 12 STMGLFRIVLLFSLCSLI 29 (286)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (286)
+.+|+.++++++.+|.+-
T Consensus 18 a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 18 AVIGLIILLILVLLAIFA 35 (56)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666666555543
No 384
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=24.64 E-value=1e+02 Score=30.52 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCC
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRY 221 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~ 221 (286)
..+.+.-+++.|++.|-.|.+.+.++-...+.+...|.+.|++.
T Consensus 57 l~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v 100 (425)
T PRK05476 57 MTIQTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPV 100 (425)
T ss_pred ccccHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceE
Confidence 34567888999999999999999998888899999999999985
No 385
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=24.64 E-value=41 Score=30.59 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=12.9
Q ss_pred ccEEEEecCCCccCC
Q 023192 134 KDAWIFDIDETLLSN 148 (286)
Q Consensus 134 ~~avVfDIDgTLl~n 148 (286)
.++|+||++|||+..
T Consensus 7 iravtfD~~~tLl~~ 21 (237)
T KOG3085|consen 7 IRAVTFDAGGTLLAT 21 (237)
T ss_pred eEEEEEeCCCceeec
Confidence 459999999999964
No 386
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=24.62 E-value=4.7e+02 Score=23.69 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=19.8
Q ss_pred HHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 182 SLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 182 v~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
.+.|-+.|+++|+.+.|++.+.+.. -.+.+++.|++
T Consensus 20 cl~LA~~l~~~g~~v~f~~~~~~~~---~~~~i~~~g~~ 55 (279)
T TIGR03590 20 CLTLARALHAQGAEVAFACKPLPGD---LIDLLLSAGFP 55 (279)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHH---HHHHHHHcCCe
Confidence 4445556666677777776665322 23445555554
No 387
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=24.52 E-value=2.5e+02 Score=26.83 Aligned_cols=77 Identities=16% Similarity=0.068 Sum_probs=42.9
Q ss_pred HHHHHHHHHCCCeEEEEcCCc------hhhH----HHHHHHHHhcCCCCc----ceEEEcCCCCCCchHHHhHHHHHHhH
Q 023192 183 LKLYEEVLGLGFKIFLLTGRS------EKQR----SITVDNLINAGVRYW----DKLILRSSDDHGKLAIIYKSEKRNEM 248 (286)
Q Consensus 183 ~ell~~Lk~~G~~Ii~vTgR~------e~~r----~~T~~~L~~~Gi~~~----~~Lilr~~~~~~Kp~~~yKs~~r~~L 248 (286)
.+++...+++|++|.+..+-+ +..| +...+.++++||.+. +.....+. ..+..-..+-.++|.++
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~-~d~~~~t~llkelr~~l 145 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPLEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGS-PEYYALTELVKETTKAF 145 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCHHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCc-chHHHHHHHHHHHHHHH
Confidence 377888999999999876522 2223 445566778888763 22111110 11111223345677777
Q ss_pred hhc--CCeEEEEEc
Q 023192 249 VQE--GYRILGNSG 260 (286)
Q Consensus 249 ~~~--Gy~i~~~IG 260 (286)
.+. |+.+.+.+.
T Consensus 146 ~~~~~~~~Lsvav~ 159 (358)
T cd02875 146 KKENPGYQISFDVA 159 (358)
T ss_pred hhcCCCcEEEEEEe
Confidence 765 566665543
No 388
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=24.48 E-value=59 Score=26.00 Aligned_cols=14 Identities=14% Similarity=-0.073 Sum_probs=11.1
Q ss_pred cEEEEecCCCccCC
Q 023192 135 DAWIFDIDETLLSN 148 (286)
Q Consensus 135 ~avVfDIDgTLl~n 148 (286)
-.|.||=||.+..+
T Consensus 80 ~tV~Fd~~G~V~~~ 93 (109)
T PRK11251 80 YFVSFDDTGHVDNK 93 (109)
T ss_pred EEEEECCCCCEEec
Confidence 47889999988754
No 389
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=24.45 E-value=62 Score=29.85 Aligned_cols=22 Identities=18% Similarity=0.162 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhhhcccc
Q 023192 16 LFRIVLLFSLCSLISRAFSHET 37 (286)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~ 37 (286)
+|++++++++.++|++|.+.++
T Consensus 6 ~~~~~~~~~~~~~l~~c~~~~~ 27 (283)
T PRK02998 6 LFLGTIISCVVLALSACGSSDN 27 (283)
T ss_pred HHHHHHHHHHHHHHHhhCCCCc
Confidence 3445555566678999987633
No 390
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=24.39 E-value=2.5e+02 Score=26.61 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 184 KLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 184 ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
+.-++|.++|+++++++-..++......+..++++..
T Consensus 64 ayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~ve 100 (312)
T KOG1014|consen 64 AYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVE 100 (312)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcE
Confidence 3445678899998888777666666666666777753
No 391
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=24.04 E-value=2e+02 Score=22.40 Aligned_cols=41 Identities=17% Similarity=0.046 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhc-CCCCcc
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINA-GVRYWD 223 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~-Gi~~~~ 223 (286)
.+...++++++++.|+.++.+|..+ .....++.++. +.+ |.
T Consensus 42 ~~~l~~~~~~~~~~~~~~i~is~d~---~~~~~~~~~~~~~~~-~~ 83 (140)
T cd02971 42 LCAFRDLAEEFAKGGAEVLGVSVDS---PFSHKAWAEKEGGLN-FP 83 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHhcccCCC-ce
Confidence 6777888888888899999999865 35567888888 554 53
No 392
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=24.00 E-value=5.8e+02 Score=23.85 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=46.8
Q ss_pred CCeEEEEcCCchh--hHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCC---eEEEEEcC-Chhhh
Q 023192 193 GFKIFLLTGRSEK--QRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGY---RILGNSGD-QWSDL 266 (286)
Q Consensus 193 G~~Ii~vTgR~e~--~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy---~i~~~IGD-q~sDl 266 (286)
+-+++++|+..-. ..+...+.|++.|+. +...+..+ .+..++....+ .....+.+.+. ..++.||- +..|+
T Consensus 20 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~-~~~~~~~~-~e~~~~~~~v~-~~~~~~~~~~~~r~d~IIavGGGsv~D~ 96 (344)
T TIGR01357 20 PSKLVIITDETVADLYADKLLEALQALGYN-VLKLTVPD-GEESKSLETVQ-RLYDQLLEAGLDRSSTIIALGGGVVGDL 96 (344)
T ss_pred CCeEEEEECCchHHHHHHHHHHHHHhcCCc-eeEEEeCC-CCCCCCHHHHH-HHHHHHHHcCCCCCCEEEEEcChHHHHH
Confidence 5789999987532 244556678888885 33223332 22222211122 23344444444 56777876 55788
Q ss_pred ccCC-----CCCcEEEecC
Q 023192 267 LGSP-----MPSRSFKLPN 280 (286)
Q Consensus 267 ~ga~-----~g~r~fkLPN 280 (286)
.++- .|.+.+.+|.
T Consensus 97 aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 97 AGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHccCCCEEEecC
Confidence 7642 3566666665
No 393
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=23.67 E-value=3.8e+02 Score=23.63 Aligned_cols=63 Identities=22% Similarity=0.202 Sum_probs=33.7
Q ss_pred HHHHHHHHHHCCCe-EEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeE
Q 023192 182 SLKLYEEVLGLGFK-IFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRI 255 (286)
Q Consensus 182 v~ell~~Lk~~G~~-Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i 255 (286)
..+.++++++.|+. |++=+...+.++.--++...+.|++.+..+..++ |.++.+++.+.|++.
T Consensus 75 l~~~l~~~~~~g~~~vv~G~i~sd~~~~~~e~v~~~~gl~~~~PLw~~~-----------~~el~~~~~~~G~~~ 138 (218)
T TIGR03679 75 LKGALKELKREGVEGIVTGAIASRYQKSRIERICEELGLKVFAPLWGRD-----------QEEYLRELVERGFRF 138 (218)
T ss_pred HHHHHHHHHHcCCCEEEECCcccHhHHHHHHHHHHhCCCeEEeehhcCC-----------HHHHHHHHHHCCCEE
Confidence 44556666666776 3333444444555555555666776433333221 345555666667664
No 394
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.66 E-value=7.2e+02 Score=24.65 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=69.9
Q ss_pred EecCCCccCCchhhhhhcCCC-----ccC----CHHHHHHHHHhcCCcccH------HHHHHHHHHHHCCC--------e
Q 023192 139 FDIDETLLSNLPYYQEHGYGL-----EIF----NPVEFDKWVEKAMSPAIE------ASLKLYEEVLGLGF--------K 195 (286)
Q Consensus 139 fDIDgTLl~n~~~~~~~~~g~-----~~f----~~~~~~~wv~~~~~~~~p------gv~ell~~Lk~~G~--------~ 195 (286)
|.||=+|.-.+.||....|.. ... ..-+++..++.-..++.| |+-.++..|++.|. .
T Consensus 258 ~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pavGFaiGveRl~~~l~~~~~~~~~~~~~~ 337 (429)
T COG0124 258 YEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAVGFAIGVERLILALEEEGKEDPVETRVD 337 (429)
T ss_pred EEEccceecchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCCCCceeEehHHHHHHHHHHHcCCCCCcCCCCC
Confidence 888999999999997654321 000 122566666664555555 77888888887763 3
Q ss_pred EEEEcCCch--hhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcCCh
Q 023192 196 IFLLTGRSE--KQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGDQW 263 (286)
Q Consensus 196 Ii~vTgR~e--~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGDq~ 263 (286)
+++++--.. ...-...+.|+++|+.. .+.... +| .|. .++.-.+.|.+.++.+|++.
T Consensus 338 v~v~~~~~~~~~~a~~la~~LR~~g~~~--~~~~~~----r~----~k~-q~k~A~~~g~~~~viiGe~E 396 (429)
T COG0124 338 VYVVPLGEDAEPEALKLAQKLRAAGISV--EVDYSG----RK----LKK-QFKYADKLGARFAVILGEDE 396 (429)
T ss_pred EEEEEcCchhHHHHHHHHHHHHHcCCcE--EEEecc----cc----HHH-HHHHHHHCCCCEEEEEcchH
Confidence 444444332 34566778899999962 232222 11 122 23333567899999999874
No 395
>CHL00066 psbH photosystem II protein H
Probab=23.64 E-value=89 Score=23.16 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 023192 12 STMGLFRIVLLFSLCSLISRAFS 34 (286)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~ 34 (286)
.-||+++.++++.+.+.|+---|
T Consensus 41 p~Mgv~m~lf~vfl~iiLeiyNs 63 (73)
T CHL00066 41 PLMGVAMALFAVFLSIILEIYNS 63 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc
Confidence 45888888888888888875443
No 396
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=23.48 E-value=41 Score=29.34 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=9.9
Q ss_pred HHHHHHHHhhhhc
Q 023192 22 LFSLCSLISRAFS 34 (286)
Q Consensus 22 ~~~~~~~~~~~~~ 34 (286)
|+++|.+|++|.|
T Consensus 8 l~~~~l~LsgCas 20 (182)
T TIGR00752 8 FTALCFGLTGCIA 20 (182)
T ss_pred HHHHHHHHhcccC
Confidence 4456678999987
No 397
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=23.33 E-value=5.3e+02 Score=24.60 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=42.9
Q ss_pred HHHHHCC-CeEEEEcCCchh---hHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcC-
Q 023192 187 EEVLGLG-FKIFLLTGRSEK---QRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGD- 261 (286)
Q Consensus 187 ~~Lk~~G-~~Ii~vTgR~e~---~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGD- 261 (286)
+.+++.| -++.++|++.-. ..+...+.|++.|+. + .++ .+...+..-.. . ......+.+.+.+.++.||-
T Consensus 22 ~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~-~-~~~-~~v~~~p~~~~-v-~~~~~~~~~~~~D~IiaiGGG 96 (379)
T TIGR02638 22 DEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIA-Y-ELF-DEVKPNPTITV-V-KAGVAAFKASGADYLIAIGGG 96 (379)
T ss_pred HHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCe-E-EEE-CCCCCCcCHHH-H-HHHHHHHHhcCCCEEEEeCCh
Confidence 4456667 589999997632 345677888888885 3 222 21111111111 1 12334445567787877875
Q ss_pred Chhhhc
Q 023192 262 QWSDLL 267 (286)
Q Consensus 262 q~sDl~ 267 (286)
+.-|..
T Consensus 97 SviD~a 102 (379)
T TIGR02638 97 SPIDTA 102 (379)
T ss_pred HHHHHH
Confidence 556765
No 398
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=23.31 E-value=2.9e+02 Score=19.93 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHH-HCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceE
Q 023192 177 PAIEASLKLYEEVL-GLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKL 225 (286)
Q Consensus 177 ~~~pgv~ell~~Lk-~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~L 225 (286)
..+|...++.++++ ..++.++.|+.-. .++...+.+++.+.+ |..+
T Consensus 18 ~~~~~l~~l~~~~~~~~~v~~v~Vs~d~--~~~~~~~~~~~~~~~-~~~~ 64 (95)
T PF13905_consen 18 KELPKLKELYKKYKKKDDVEFVFVSLDE--DEEEWKKFLKKNNFP-WYNV 64 (95)
T ss_dssp HHHHHHHHHHHHHTTTTTEEEEEEE-SS--SHHHHHHHHHTCTTS-SEEE
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEEeCC--CHHHHHHHHHhcCCC-ceEE
Confidence 35677888888887 6688999998863 366788888988775 5443
No 399
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=23.29 E-value=1.9e+02 Score=30.99 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=30.9
Q ss_pred CcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCC
Q 023192 176 SPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGV 219 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi 219 (286)
..-+|....++++|+++|+++++.-+=.-.+....-+-+.+.|+
T Consensus 317 ~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy 360 (772)
T COG1501 317 PDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGY 360 (772)
T ss_pred cccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCe
Confidence 34556667999999999999998877543333444555666666
No 400
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.10 E-value=1.9e+02 Score=24.86 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=45.0
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCC-eEEEEcCCchhhHHHH
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGF-KIFLLTGRSEKQRSIT 210 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~-~Ii~vTgR~e~~r~~T 210 (286)
.|++.|+|-+=|-...+ . ...-+||-++-..+|+++|+ .|+.+|-++ .=++
T Consensus 42 ~GKKvIifGvPgAFtPt-----------------C--------s~~HvPGyi~~a~elksKGVd~iicvSVnD---pFv~ 93 (171)
T KOG0541|consen 42 KGKKVILFGVPGAFTPT-----------------C--------SSSHVPGYIEKADELKSKGVDEIICVSVND---PFVM 93 (171)
T ss_pred CCceEEEEcCCCccCCc-----------------c--------ccccCchHHHHHHHHHhcCCcEEEEEecCc---HHHH
Confidence 45788888877744422 0 23567889999999999998 566778777 4567
Q ss_pred HHHHHhcCCCC
Q 023192 211 VDNLINAGVRY 221 (286)
Q Consensus 211 ~~~L~~~Gi~~ 221 (286)
..|=+.+|-..
T Consensus 94 ~aW~k~~g~~~ 104 (171)
T KOG0541|consen 94 KAWAKSLGAND 104 (171)
T ss_pred HHHHhhcCccc
Confidence 88888887753
No 401
>PRK11189 lipoprotein NlpI; Provisional
Probab=22.88 E-value=64 Score=29.65 Aligned_cols=19 Identities=11% Similarity=0.051 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 023192 19 IVLLFSLCSLISRAFSHET 37 (286)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (286)
-++++++++||+||++++.
T Consensus 6 ~~~~~~~~~~~~~c~~~~~ 24 (296)
T PRK11189 6 RWCFVATALLLAGCSSSNS 24 (296)
T ss_pred HHHHHHHHHHHHhcccCcc
Confidence 3445556788999998543
No 402
>PHA02867 C-type lectin protein; Provisional
Probab=22.75 E-value=37 Score=29.23 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=24.9
Q ss_pred CCchhh------hHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023192 1 MPFLLD------SFRSISTMGLFRIVLLFSLCSLISRAFSH 35 (286)
Q Consensus 1 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (286)
|||++. ++-.|.++|.+.++|+..+.++. |+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~ 39 (167)
T PHA02867 1 MPILLKKQVSEVSCYAITVLGILCLILFTILVVVT--CKWY 39 (167)
T ss_pred CcEEeeeeecceeeehhHHHHHHHHHHHHHhhhee--EEee
Confidence 677763 67778889998888888777776 5555
No 403
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=22.75 E-value=3.8e+02 Score=24.65 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=38.9
Q ss_pred HHHHHHHHCCCeEEEEcCCc--------------------hhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHH
Q 023192 184 KLYEEVLGLGFKIFLLTGRS--------------------EKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSE 243 (286)
Q Consensus 184 ell~~Lk~~G~~Ii~vTgR~--------------------e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~ 243 (286)
++++.++++|+++.+.=+.. +...+...+.|+++|+.+.+--+-......+..-..+-.+
T Consensus 49 ~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~ 128 (313)
T cd02874 49 RLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRE 128 (313)
T ss_pred HHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHH
Confidence 56667778888887553321 1123455666778888763210100111111112234456
Q ss_pred HHHhHhhcCCeEEEE
Q 023192 244 KRNEMVQEGYRILGN 258 (286)
Q Consensus 244 ~r~~L~~~Gy~i~~~ 258 (286)
+|..+.+.|+.+.+.
T Consensus 129 lr~~l~~~~~~lsv~ 143 (313)
T cd02874 129 LSDRLHPAGYTLSTA 143 (313)
T ss_pred HHHHhhhcCcEEEEE
Confidence 778887777765543
No 404
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.61 E-value=4.7e+02 Score=21.99 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhc
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINA 217 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~ 217 (286)
...=+.++++.+.+.|.+|+++-++++.. +...++|++.
T Consensus 33 g~dl~~~l~~~~~~~~~~ifllG~~~~~~-~~~~~~l~~~ 71 (172)
T PF03808_consen 33 GSDLFPDLLRRAEQRGKRIFLLGGSEEVL-EKAAANLRRR 71 (172)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCHHHH-HHHHHHHHHH
Confidence 33456678888888999999999998654 4556666664
No 405
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=22.49 E-value=5.6e+02 Score=24.41 Aligned_cols=77 Identities=21% Similarity=0.225 Sum_probs=42.6
Q ss_pred HHHHHCCCeEEEEcCCch----hhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcC-
Q 023192 187 EEVLGLGFKIFLLTGRSE----KQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGD- 261 (286)
Q Consensus 187 ~~Lk~~G~~Ii~vTgR~e----~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGD- 261 (286)
+.+++.|-++++||++.. ...+...+.|++.|+. + . +..+-..+...... ......+++.+...++.||-
T Consensus 19 ~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~-~-~-~~~~v~~~p~~~~v--~~~~~~~~~~~~D~IiavGGG 93 (380)
T cd08185 19 EEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVE-V-V-VFDKVEPNPTTTTV--MEGAALAREEGCDFVVGLGGG 93 (380)
T ss_pred HHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCe-E-E-EeCCccCCCCHHHH--HHHHHHHHHcCCCEEEEeCCc
Confidence 345556789999998753 1245677888888885 2 1 22221111111111 12233444566777777875
Q ss_pred Chhhhcc
Q 023192 262 QWSDLLG 268 (286)
Q Consensus 262 q~sDl~g 268 (286)
+.-|...
T Consensus 94 S~iD~aK 100 (380)
T cd08185 94 SSMDTAK 100 (380)
T ss_pred cHHHHHH
Confidence 5566643
No 406
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=22.48 E-value=2.3e+02 Score=26.42 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=56.6
Q ss_pred cCCcccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCc--hHHHh--HHHHHHhHh
Q 023192 174 AMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGK--LAIIY--KSEKRNEMV 249 (286)
Q Consensus 174 ~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~K--p~~~y--Ks~~r~~L~ 249 (286)
+....+..+++++++.+..|..+.+.-|--+.+ -.+.|+++|+..|.+-+=.+.....| ....| .......+.
T Consensus 148 GRk~~fk~IlE~ikevr~MgmEvCvTLGMv~~q---QAkeLKdAGLTAYNHNlDTSREyYskvItTRtYDdRL~Ti~nvr 224 (380)
T KOG2900|consen 148 GRKSAFKRILEMIKEVRDMGMEVCVTLGMVDQQ---QAKELKDAGLTAYNHNLDTSREYYSKVITTRTYDDRLQTIKNVR 224 (380)
T ss_pred cchhHHHHHHHHHHHHHcCCceeeeeeccccHH---HHHHHHhccceecccCccchhhhhcccceecchHHHHHHHHHHH
Confidence 456788999999999999999999988876543 35779999998775432222111111 00012 123345566
Q ss_pred hcCCeEE----EEEcCChhhhcc
Q 023192 250 QEGYRIL----GNSGDQWSDLLG 268 (286)
Q Consensus 250 ~~Gy~i~----~~IGDq~sDl~g 268 (286)
+.|.++| +-.|....|-.|
T Consensus 225 ~aGikvCsGGIlGLGE~e~DriG 247 (380)
T KOG2900|consen 225 EAGIKVCSGGILGLGESEDDRIG 247 (380)
T ss_pred Hhcceecccccccccccccceee
Confidence 6777664 234555555444
No 407
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=22.48 E-value=5.7e+02 Score=24.35 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=43.7
Q ss_pred HHHHHHHCC-CeEEEEcCCchh---hHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEc
Q 023192 185 LYEEVLGLG-FKIFLLTGRSEK---QRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSG 260 (286)
Q Consensus 185 ll~~Lk~~G-~~Ii~vTgR~e~---~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IG 260 (286)
+-..+++.| -+++++|++.-. ..+...+.|++.|+. + .+..+...+..-.. . ........+.+.+.++.||
T Consensus 19 l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~-~--~~f~~v~~~p~~~~-v-~~~~~~~~~~~~D~IIavG 93 (377)
T cd08176 19 IGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGID-Y--VIYDGVKPNPTITN-V-KDGLAVFKKEGCDFIISIG 93 (377)
T ss_pred HHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCe-E--EEeCCCCCCCCHHH-H-HHHHHHHHhcCCCEEEEeC
Confidence 334566667 578899987542 356778889988885 3 22222111211111 1 2334445556778788788
Q ss_pred C-Chhhhc
Q 023192 261 D-QWSDLL 267 (286)
Q Consensus 261 D-q~sDl~ 267 (286)
- +.-|..
T Consensus 94 GGS~iD~a 101 (377)
T cd08176 94 GGSPHDCA 101 (377)
T ss_pred CcHHHHHH
Confidence 5 555643
No 408
>PRK02947 hypothetical protein; Provisional
Probab=22.45 E-value=1.1e+02 Score=27.70 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCch
Q 023192 180 EASLKLYEEVLGLGFKIFLLTGRSE 204 (286)
Q Consensus 180 pgv~ell~~Lk~~G~~Ii~vTgR~e 204 (286)
+.++++++.++++|.+++.+|+...
T Consensus 120 ~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 120 PVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 4788999999999999999999863
No 409
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=22.37 E-value=75 Score=30.47 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=14.0
Q ss_pred CCccEEEEecCCCccC
Q 023192 132 DGKDAWIFDIDETLLS 147 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~ 147 (286)
+..+++.||+|.||+.
T Consensus 10 ~~i~~~GFDmDyTLa~ 25 (343)
T TIGR02244 10 EKIQVFGFDMDYTLAQ 25 (343)
T ss_pred ccCCEEEECccccccc
Confidence 5678999999999983
No 410
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=22.29 E-value=2.8e+02 Score=21.63 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=47.5
Q ss_pred ccCCCccccHHHHHHHHHHhhhhhhccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHH
Q 023192 104 MMGRGYGLDLERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASL 183 (286)
Q Consensus 104 ~~~~~Y~~D~~~v~~~a~~y~~~~~~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ 183 (286)
+.|.-|..|..........|++...... ...+.|++. |. | ||.. ..+.+-.+.
T Consensus 14 i~GeSypEn~~~Fy~Pi~~wl~~Yl~~~--~~~i~~~~~--L~----Y----------fNTS---------Ssk~l~~i~ 66 (99)
T PF09345_consen 14 ISGESYPENAFAFYQPILDWLEAYLAEP--NKPITFNFK--LS----Y----------FNTS---------SSKALMDIF 66 (99)
T ss_pred EecccCccCHHHHHHHHHHHHHHHHhCC--CCcEEEEEE--EE----E----------EecH---------hHHHHHHHH
Confidence 6788999999999999999987765443 334555553 21 1 2211 346677888
Q ss_pred HHHHHHHHCCCeEEEE
Q 023192 184 KLYEEVLGLGFKIFLL 199 (286)
Q Consensus 184 ell~~Lk~~G~~Ii~v 199 (286)
++|+.+.++|.+|.+.
T Consensus 67 ~~Le~~~~~g~~V~v~ 82 (99)
T PF09345_consen 67 DLLEDAAQKGGKVTVN 82 (99)
T ss_pred HHHHHHHhcCCcEEEE
Confidence 8899888989888763
No 411
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=22.18 E-value=6.6e+02 Score=23.75 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
.|...+++++++++|+.+.+.||-.-- -+...+.|.++|+.
T Consensus 76 ~~~~~~il~~~~~~g~~~~i~TNG~ll-~~~~~~~L~~~g~~ 116 (378)
T PRK05301 76 RKDLEELVAHARELGLYTNLITSGVGL-TEARLAALKDAGLD 116 (378)
T ss_pred chhHHHHHHHHHHcCCcEEEECCCccC-CHHHHHHHHHcCCC
Confidence 356778899999999999999987532 23345678888875
No 412
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=22.15 E-value=2e+02 Score=20.90 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHHHCC-CeEEEEcCCc-----hhhHHHHHHHHHhcCCC
Q 023192 177 PAIEASLKLYEEVLGLG-FKIFLLTGRS-----EKQRSITVDNLINAGVR 220 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G-~~Ii~vTgR~-----e~~r~~T~~~L~~~Gi~ 220 (286)
.+..-+.+++..++..| -.+.++||+- ...+....+||++ ++.
T Consensus 10 eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L~~-~~~ 58 (83)
T PF01713_consen 10 EALRALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWLEE-GYQ 58 (83)
T ss_dssp HHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHHHH-THC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHHHh-hhc
Confidence 35556777788887776 4677999986 3458899999988 765
No 413
>PRK10540 lipoprotein; Provisional
Probab=22.08 E-value=83 Score=23.24 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 023192 17 FRIVLLFSLCSLISRAFS 34 (286)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~ 34 (286)
+.+.+.+++++.|++|++
T Consensus 9 ~~~~~~~~~a~~L~gC~~ 26 (72)
T PRK10540 9 AAAVLAITLAMSLSACSN 26 (72)
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 445666777888999974
No 414
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=22.02 E-value=1.1e+02 Score=31.02 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
.+++.++.+.|.+.|++|+ .|+. |.++|++.|++
T Consensus 10 K~~iv~lAk~L~~lGfeIi-ATgG-------Tak~L~e~GI~ 43 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVELL-STGG-------TAKLLAEAGVP 43 (511)
T ss_pred cccHHHHHHHHHHCCCEEE-Eech-------HHHHHHHCCCe
Confidence 4688999999999999995 6665 67899999996
No 415
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=21.94 E-value=70 Score=23.96 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhhhhccCCCccEEEEecCCCccCC
Q 023192 114 ERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLSN 148 (286)
Q Consensus 114 ~~v~~~a~~y~~~~~~~~~~~~avVfDIDgTLl~n 148 (286)
+.+..+|+.+++.+.. ++.--.||+|-|||++.+
T Consensus 38 eea~~~a~~~l~~~r~-~~~gY~fi~d~~g~~l~h 71 (95)
T PF08269_consen 38 EEAQQQAREALRALRY-GGDGYFFIYDMDGVVLAH 71 (95)
T ss_dssp -TTHHHHHHHHHH--S-BTTB--EEE-TTSBEEEE
T ss_pred HHHHHHHHHHHhcccc-CCCCeEEEEeCCCeEEEc
Confidence 3445677777777776 333468999999999854
No 416
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=21.92 E-value=2.4e+02 Score=18.78 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=17.8
Q ss_pred EEcCCchhhHHHHHHHHHhcCCCCcceEEE
Q 023192 198 LLTGRSEKQRSITVDNLINAGVRYWDKLIL 227 (286)
Q Consensus 198 ~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lil 227 (286)
+-|......-..+.++|++.|++ |..+-+
T Consensus 3 vy~~~~C~~C~~~~~~L~~~~i~-y~~~dv 31 (60)
T PF00462_consen 3 VYTKPGCPYCKKAKEFLDEKGIP-YEEVDV 31 (60)
T ss_dssp EEESTTSHHHHHHHHHHHHTTBE-EEEEEG
T ss_pred EEEcCCCcCHHHHHHHHHHcCCe-eeEccc
Confidence 33444333446678899999987 554433
No 417
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=21.81 E-value=1e+02 Score=27.82 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchh
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEK 205 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~ 205 (286)
-.+.+.+.++.++++|.+|+.+|+.+..
T Consensus 187 ~~~~~~~~~~~ak~~ga~iI~IT~~~~s 214 (278)
T PRK11557 187 ERRELNLAADEALRVGAKVLAITGFTPN 214 (278)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 3467889999999999999999998743
No 418
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=21.69 E-value=2.3e+02 Score=25.57 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCch--hhHHHHHHHHHhcCCCC
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSE--KQRSITVDNLINAGVRY 221 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e--~~r~~T~~~L~~~Gi~~ 221 (286)
-+|...++++.|+++|+++++.+.-.- -..+...+.+...|+.+
T Consensus 64 ~Fpdp~~~i~~l~~~g~~~~~~~~P~v~~w~~~~~~~~~~~~Gvdg 109 (265)
T cd06589 64 KFPNPKSMIDELHDNGVKLVLWIDPYIREWWAEVVKKLLVSLGVDG 109 (265)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEeChhHHHHHHHHHHHhhccCCCCE
Confidence 467778999999999999999887642 11222233334458765
No 419
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=21.56 E-value=6.2e+02 Score=23.02 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHCCCeEEEEcCCch-hhHHHH---HHHHH-hcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCe-
Q 023192 181 ASLKLYEEVLGLGFKIFLLTGRSE-KQRSIT---VDNLI-NAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYR- 254 (286)
Q Consensus 181 gv~ell~~Lk~~G~~Ii~vTgR~e-~~r~~T---~~~L~-~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~- 254 (286)
...+.++.|++.|...+-||-.+. ..|..| .+.|. +.|++..-++-.|+.+ ....++ ....+...|.+
T Consensus 16 ~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n-----~~~l~~-~L~~~~~~Gi~n 89 (272)
T TIGR00676 16 NLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGAT-----REEIRE-ILREYRELGIRH 89 (272)
T ss_pred HHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCC-----HHHHHH-HHHHHHHCCCCE
Confidence 444455566666666777766543 222222 23344 4577655555554321 111222 22334555655
Q ss_pred EEEEEcCChh
Q 023192 255 ILGNSGDQWS 264 (286)
Q Consensus 255 i~~~IGDq~s 264 (286)
+.+.-||...
T Consensus 90 vL~l~GD~~~ 99 (272)
T TIGR00676 90 ILALRGDPPK 99 (272)
T ss_pred EEEeCCCCCC
Confidence 4556677664
No 420
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=21.43 E-value=71 Score=23.94 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhhhcc
Q 023192 19 IVLLFSLCSLISRAFSH 35 (286)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ 35 (286)
+.|||..+++||+|.+-
T Consensus 8 lFLlFifsillQsgtNf 24 (87)
T PF07436_consen 8 LFLLFIFSILLQSGTNF 24 (87)
T ss_pred HHHHHHHHHHHhcCCce
Confidence 35788999999999876
No 421
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=21.40 E-value=1.2e+02 Score=18.47 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 023192 14 MGLFRIVLLFSLCSLI 29 (286)
Q Consensus 14 ~~~~~~~~~~~~~~~~ 29 (286)
+|++.|+++.|+..+|
T Consensus 10 i~ly~~l~~~s~~~Li 25 (29)
T TIGR03063 10 IGLYAVLFLGSGLFLI 25 (29)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6888888877765554
No 422
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=21.35 E-value=78 Score=26.06 Aligned_cols=62 Identities=6% Similarity=0.066 Sum_probs=32.4
Q ss_pred CCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHHHHCCCeEEEEcCC
Q 023192 132 DGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGR 202 (286)
Q Consensus 132 ~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~Lk~~G~~Ii~vTgR 202 (286)
..+..++||+.+|+- . ++.+.. ....+++..+..... -.....+.|......+.-|++++.-
T Consensus 43 ~~P~iV~FDmK~Tld-~--F~~Q~~--~~~lte~q~e~lt~r----F~~aL~~~L~~yq~~H~~VILVspA 104 (128)
T PRK13717 43 NAPVTAAFNMKQTVD-A--FFDSAS--QKQLSEAQSKALSAR----FNTALEASLQAWQQKHHAVILVSPA 104 (128)
T ss_pred CCCeEEEEehHHHHH-H--HHHHHh--ccCCCHHHHHHHHHH----HHHHHHHHHHHHHHhCCEEEEechh
Confidence 467899999999994 2 332221 222333322221111 1112334566666677777777653
No 423
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=21.18 E-value=54 Score=28.02 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=19.2
Q ss_pred eEEEEEcCChhhhccCCCCCcEEEecC
Q 023192 254 RILGNSGDQWSDLLGSPMPSRSFKLPN 280 (286)
Q Consensus 254 ~i~~~IGDq~sDl~ga~~g~r~fkLPN 280 (286)
+.+++|||+.+|+.--......|..-|
T Consensus 203 ~~~~~~GD~~ND~~Ml~~~~~~~am~n 229 (254)
T PF08282_consen 203 EDIIAFGDSENDIEMLELAGYSVAMGN 229 (254)
T ss_dssp GGEEEEESSGGGHHHHHHSSEEEEETT
T ss_pred ceeEEeecccccHhHHhhcCeEEEEcC
Confidence 468899999999976544445555544
No 424
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=21.17 E-value=2.1e+02 Score=23.77 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHh
Q 023192 180 EASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLIN 216 (286)
Q Consensus 180 pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~ 216 (286)
+...++++.++++|+++.+-||.... +...+.+..
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~Tg~~~~--~~~~~il~~ 109 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLYTGLEPK--DIPLELVQH 109 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCH--HHHHHHHHh
Confidence 46889999999999999999996532 234444433
No 425
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=21.15 E-value=99 Score=23.16 Aligned_cols=20 Identities=35% Similarity=0.326 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 023192 16 LFRIVLLFSLCSLISRAFSH 35 (286)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~ 35 (286)
.|.++|++.|..++-+|+--
T Consensus 32 aFV~~L~~fL~~liVRCfrI 51 (81)
T PF11057_consen 32 AFVGLLCLFLGLLIVRCFRI 51 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35677777888899999864
No 426
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=21.15 E-value=1.1e+02 Score=22.76 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 023192 12 STMGLFRIVLLFSLCSLISRAFSH 35 (286)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~ 35 (286)
.-||+++.++++.+.+.|+---|+
T Consensus 41 p~Mg~~m~lf~vfl~iileiyNss 64 (73)
T PLN00055 41 PLMGVAMALFAVFLSIILEIYNSS 64 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Confidence 458888888888888888755443
No 427
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=21.10 E-value=5.4e+02 Score=23.72 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=26.9
Q ss_pred HHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 183 LKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 183 ~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
.++.+.|.++|+.++++.-|.+...+...+.-.++|..
T Consensus 20 ~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~ 57 (265)
T COG0300 20 AELAKQLARRGYNLILVARREDKLEALAKELEDKTGVE 57 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCce
Confidence 46677899999999988887766655555544555554
No 428
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=21.05 E-value=6.6e+02 Score=23.99 Aligned_cols=76 Identities=20% Similarity=0.157 Sum_probs=43.3
Q ss_pred HHHHHCC-CeEEEEcCCchh---hHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcC-
Q 023192 187 EEVLGLG-FKIFLLTGRSEK---QRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGD- 261 (286)
Q Consensus 187 ~~Lk~~G-~~Ii~vTgR~e~---~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGD- 261 (286)
+.+++.| -+++++|++.-. ..+...+.|++.|+. + .++ .+... .|....-......+.+.+.+.++.||-
T Consensus 23 ~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~-~-~~~-~~v~~--~p~~~~v~~~~~~~~~~~~D~IIaiGGG 97 (382)
T PRK10624 23 DEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLA-Y-EIY-DGVKP--NPTIEVVKEGVEVFKASGADYLIAIGGG 97 (382)
T ss_pred HHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCe-E-EEe-CCCCC--CcCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 4456667 588999997532 345677888888985 3 222 11111 111111123334555667888888886
Q ss_pred Chhhhc
Q 023192 262 QWSDLL 267 (286)
Q Consensus 262 q~sDl~ 267 (286)
+.-|+.
T Consensus 98 S~iD~a 103 (382)
T PRK10624 98 SPQDTC 103 (382)
T ss_pred HHHHHH
Confidence 556665
No 429
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=20.78 E-value=1.3e+02 Score=25.24 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhhhhccCCCccEEEEecCCCccCCchhhhhhcCCCccCCHHHHHHHHHhcCCcccHHHHHHHHHH-HH
Q 023192 113 LERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFNPVEFDKWVEKAMSPAIEASLKLYEEV-LG 191 (286)
Q Consensus 113 ~~~v~~~a~~y~~~~~~~~~~~~avVfDIDgTLl~n~~~~~~~~~g~~~f~~~~~~~wv~~~~~~~~pgv~ell~~L-k~ 191 (286)
.....+||..|++.++....+.-.+++|+......+. +. ......+..+++++ +.
T Consensus 63 ~~~a~~qA~~f~~~~~~~~~~~~~~~lD~E~~~~~~~-------------~~-----------~~~~~~~~~f~~~~~~~ 118 (181)
T PF01183_consen 63 SSDAEAQADYFLNQVKGGDPGDLPPALDVEDDKSNNP-------------SK-----------SDNTAWVKAFLDEVEKA 118 (181)
T ss_dssp HCHHHHHHHHHHHCTHTSSTSCS-EEEEE-S-GGCCS-------------SH-----------HHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhcccCCCcceEEEeccccccCCC-------------CH-----------HHHHHHHHHHHHHHHHH
Confidence 3455789999888885222223347899996521110 01 12334677889999 45
Q ss_pred CCCeEEEEcCCc
Q 023192 192 LGFKIFLLTGRS 203 (286)
Q Consensus 192 ~G~~Ii~vTgR~ 203 (286)
.|+++++=|++.
T Consensus 119 ~G~~~~iY~~~~ 130 (181)
T PF01183_consen 119 AGYKPGIYTSKS 130 (181)
T ss_dssp CTSEEEEEEEHH
T ss_pred hCCceeEeecHH
Confidence 899999988875
No 430
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=20.75 E-value=77 Score=28.09 Aligned_cols=27 Identities=15% Similarity=0.038 Sum_probs=19.4
Q ss_pred eEEEEEcCChhhhccCCCCCcEEEecC
Q 023192 254 RILGNSGDQWSDLLGSPMPSRSFKLPN 280 (286)
Q Consensus 254 ~i~~~IGDq~sDl~ga~~g~r~fkLPN 280 (286)
..+++|||+.+|+.........+...|
T Consensus 205 ~~~~~~GD~~nD~~m~~~~~~~~a~~n 231 (256)
T TIGR00099 205 EDVIAFGDGMNDIEMLEAAGYGVAMGN 231 (256)
T ss_pred HHEEEeCCcHHhHHHHHhCCceeEecC
Confidence 368999999999988654444555544
No 431
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=20.70 E-value=2.1e+02 Score=27.12 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=20.2
Q ss_pred cccHHHHHHHHHHHHCCCeEEEEcC
Q 023192 177 PAIEASLKLYEEVLGLGFKIFLLTG 201 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~~Ii~vTg 201 (286)
..+|...+++++|+++|+++++...
T Consensus 61 ~~FPdp~~mv~~L~~~G~klv~~i~ 85 (332)
T cd06601 61 GGFPNPKEMFDNLHNKGLKCSTNIT 85 (332)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEec
Confidence 4467778999999999999987653
No 432
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=20.57 E-value=5.2e+02 Score=21.80 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=15.5
Q ss_pred CCCccEEEEe-cCCCccCCch
Q 023192 131 GDGKDAWIFD-IDETLLSNLP 150 (286)
Q Consensus 131 ~~~~~avVfD-IDgTLl~n~~ 150 (286)
..|-+.+=|| .||....|.+
T Consensus 22 ~~g~d~i~~~~~Dg~~~~~~~ 42 (210)
T TIGR01163 22 EAGADWIHVDVMDGHFVPNLT 42 (210)
T ss_pred HcCCCEEEEcCCCCCCCCCcc
Confidence 4567889999 8999887654
No 433
>PRK09810 entericidin A; Provisional
Probab=20.55 E-value=95 Score=20.46 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=6.2
Q ss_pred HHHHHhhhhc
Q 023192 25 LCSLISRAFS 34 (286)
Q Consensus 25 ~~~~~~~~~~ 34 (286)
.+..|++|.-
T Consensus 12 ~~~~L~aCNT 21 (41)
T PRK09810 12 ASTLLTGCNT 21 (41)
T ss_pred HHHHHhhhhh
Confidence 3346888843
No 434
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=20.52 E-value=1.2e+02 Score=27.67 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchh
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEK 205 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~ 205 (286)
.+.+.++++.++++|.+++.+|+.+..
T Consensus 200 t~~~~~~~~~ak~~g~~ii~IT~~~~s 226 (292)
T PRK11337 200 TSDVIEAVELAKKNGAKIICITNSYHS 226 (292)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 467999999999999999999998743
No 435
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=20.51 E-value=6.8e+02 Score=23.80 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=42.0
Q ss_pred HHHHHCC-CeEEEEcCCchh---hHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEcC-
Q 023192 187 EEVLGLG-FKIFLLTGRSEK---QRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSGD- 261 (286)
Q Consensus 187 ~~Lk~~G-~~Ii~vTgR~e~---~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IGD- 261 (286)
+.+++.| .+++++|++.-. ..+...+.|++.|+. +. ++ ..-..+.. .... ......+.+.+.+.++.||-
T Consensus 19 ~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~-~~-~~-~~v~~~p~-~~~v-~~~~~~~~~~~~d~IIaiGGG 93 (374)
T cd08189 19 AAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIE-YA-VY-DGVPPDPT-IENV-EAGLALYRENGCDAILAVGGG 93 (374)
T ss_pred HHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCe-EE-Ee-CCCCCCcC-HHHH-HHHHHHHHhcCCCEEEEeCCc
Confidence 4456667 589999997532 234566778888885 21 22 11111111 1111 22334445567788887875
Q ss_pred Chhhhcc
Q 023192 262 QWSDLLG 268 (286)
Q Consensus 262 q~sDl~g 268 (286)
+.-|...
T Consensus 94 S~~D~aK 100 (374)
T cd08189 94 SVIDCAK 100 (374)
T ss_pred cHHHHHH
Confidence 5566654
No 436
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=20.44 E-value=7.7e+02 Score=24.97 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCC
Q 023192 178 AIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRY 221 (286)
Q Consensus 178 ~~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~ 221 (286)
......++.++++++|.++.++--++ ...+.|++.|+..
T Consensus 511 g~~~L~~l~~~l~~~g~~l~l~~~~~-----~v~~~l~~~gl~~ 549 (563)
T TIGR00815 511 GIHALEELRKELKARGIQLLLANPNK-----AVRSTLKRGGLVE 549 (563)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCh-----HHHHHHHHCCchh
Confidence 33456788889999999999887664 3567788888853
No 437
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=20.28 E-value=3e+02 Score=21.09 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=28.3
Q ss_pred HHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcC
Q 023192 185 LYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRS 229 (286)
Q Consensus 185 ll~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~ 229 (286)
....+++.|+++++|+--+. +..+++.+..+++ ++ ++.-+
T Consensus 5 ~~~~l~~~gv~lv~I~~g~~---~~~~~f~~~~~~p-~~-ly~D~ 44 (115)
T PF13911_consen 5 RKPELEAAGVKLVVIGCGSP---EGIEKFCELTGFP-FP-LYVDP 44 (115)
T ss_pred hHHHHHHcCCeEEEEEcCCH---HHHHHHHhccCCC-Cc-EEEeC
Confidence 35678889999999996653 2377788788887 44 55433
No 438
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=20.27 E-value=5.8e+02 Score=24.58 Aligned_cols=76 Identities=14% Similarity=0.255 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHCCC--eEEEEcCCchhhHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEE
Q 023192 179 IEASLKLYEEVLGLGF--KIFLLTGRSEKQRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRIL 256 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~--~Ii~vTgR~e~~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~ 256 (286)
.+|-.+ .+.|++.|+ .++++|..+-. ...+.|.+.|+. .-+++.+.+.+++- ......+.|+..|.++.
T Consensus 29 veg~~d-~~~l~~lgi~g~~i~~s~~p~~---~cad~ii~~gi~--rVVi~~D~d~~G~~---~~~~~~~~L~~aGi~V~ 99 (360)
T PRK14719 29 VEGPND-ILSLKNLKINANFITVSNTPVF---QIADDLIAENIS--EVILLTDFDRAGRV---YAKNIMEEFQSRGIKVN 99 (360)
T ss_pred EEcchH-HHHHHHcCCCCcEEEEeCCchH---HHHHHHHHcCCC--EEEEEECCCCCCCc---cchHHHHHHHHCCCEEE
Confidence 345444 456888898 68888887732 255566777886 33444433333321 01134566777887775
Q ss_pred EEEcCCh
Q 023192 257 GNSGDQW 263 (286)
Q Consensus 257 ~~IGDq~ 263 (286)
....+..
T Consensus 100 ~~l~~e~ 106 (360)
T PRK14719 100 NLIRKEI 106 (360)
T ss_pred eehHHHH
Confidence 5444433
No 439
>smart00463 SMR Small MutS-related domain.
Probab=20.26 E-value=2.3e+02 Score=20.41 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=22.1
Q ss_pred cccHHHHHHHHHHHHCCC--eEEEEcCCch
Q 023192 177 PAIEASLKLYEEVLGLGF--KIFLLTGRSE 204 (286)
Q Consensus 177 ~~~pgv~ell~~Lk~~G~--~Ii~vTgR~e 204 (286)
.++.-..++++.+++.|. .+.++|||-.
T Consensus 13 eA~~~l~~~l~~~~~~~~~~~~~II~G~G~ 42 (80)
T smart00463 13 EALTALDKFLNNARLKGLEQKLVIITGKGK 42 (80)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcccC
Confidence 456667788888888886 7889999853
No 440
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=20.19 E-value=1.3e+02 Score=30.60 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhcCCC
Q 023192 179 IEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVR 220 (286)
Q Consensus 179 ~pgv~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~Gi~ 220 (286)
.+++.++.+.|.+.|++|+ .|+- |.++|+++|++
T Consensus 14 K~~iv~lAk~L~~lGfeI~-AT~G-------Tak~L~e~GI~ 47 (513)
T PRK00881 14 KTGIVEFAKALVELGVEIL-STGG-------TAKLLAEAGIP 47 (513)
T ss_pred cccHHHHHHHHHHCCCEEE-Ecch-------HHHHHHHCCCe
Confidence 4578999999999999995 6654 67899999996
No 441
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=20.18 E-value=1.1e+02 Score=20.37 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=21.5
Q ss_pred HHHHHHHHHCCCeEEEEcCCchhhHHHHHHHHHhc
Q 023192 183 LKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINA 217 (286)
Q Consensus 183 ~ell~~Lk~~G~~Ii~vTgR~e~~r~~T~~~L~~~ 217 (286)
.++-.+|++.|++..=||..+ |...++-|.++
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sT---R~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTT---RKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcch---HHHHHHHHHHH
Confidence 356667777787777777665 66666666553
No 442
>PRK15396 murein lipoprotein; Provisional
Probab=20.09 E-value=1e+02 Score=23.20 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=8.2
Q ss_pred HHHHhhhhcc
Q 023192 26 CSLISRAFSH 35 (286)
Q Consensus 26 ~~~~~~~~~~ 35 (286)
+.+|.||.|.
T Consensus 15 ~~LLaGCAs~ 24 (78)
T PRK15396 15 STLLAGCSSN 24 (78)
T ss_pred HHHHHHcCCc
Confidence 4679999987
No 443
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=20.07 E-value=6.3e+02 Score=23.95 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=47.7
Q ss_pred HHHHCCCeEEEEcCCchh--hHHHHHHHHHhcCCCCcceEEEcCCCCCCchHHHhHHHHHHhHhhcCCeEEEEEc-CChh
Q 023192 188 EVLGLGFKIFLLTGRSEK--QRSITVDNLINAGVRYWDKLILRSSDDHGKLAIIYKSEKRNEMVQEGYRILGNSG-DQWS 264 (286)
Q Consensus 188 ~Lk~~G~~Ii~vTgR~e~--~r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~~yKs~~r~~L~~~Gy~i~~~IG-Dq~s 264 (286)
.+++.|-+++++|++... ..+...+.|++.|+. +. +..-..+..+..+ ......+.+.+...++.|| =+..
T Consensus 24 ~l~~~g~~~livtd~~~~~~~~~~v~~~l~~~~~~-~~--~~~~~~ep~~~~v---~~~~~~~~~~~~d~IIavGGGsv~ 97 (366)
T PRK09423 24 YLKPLGKRALVIADEFVLGIVGDRVEASLKEAGLT-VV--FEVFNGECSDNEI---DRLVAIAEENGCDVVIGIGGGKTL 97 (366)
T ss_pred HHHHcCCEEEEEEChhHHHHHHHHHHHHHHhCCCe-EE--EEEeCCCCCHHHH---HHHHHHHHhcCCCEEEEecChHHH
Confidence 455667889999987532 344556667777875 21 1111122222222 2233444455677777777 4667
Q ss_pred hhccCC---CCCcEEEecC
Q 023192 265 DLLGSP---MPSRSFKLPN 280 (286)
Q Consensus 265 Dl~ga~---~g~r~fkLPN 280 (286)
|+.++- .+.+.+.+|.
T Consensus 98 D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 98 DTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 776542 3555666653
No 444
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=20.06 E-value=7.4e+02 Score=24.90 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=50.9
Q ss_pred CcccHHHHHHHHHHHHCCC-eEEEEcCCchhh-HHHHHHHHHhcCCCCcceEEEcCCCCCCchHH----HhHHHHHHhHh
Q 023192 176 SPAIEASLKLYEEVLGLGF-KIFLLTGRSEKQ-RSITVDNLINAGVRYWDKLILRSSDDHGKLAI----IYKSEKRNEMV 249 (286)
Q Consensus 176 ~~~~pgv~ell~~Lk~~G~-~Ii~vTgR~e~~-r~~T~~~L~~~Gi~~~~~Lilr~~~~~~Kp~~----~yKs~~r~~L~ 249 (286)
........++++.+++.|+ .|-+.||+-.-- .....+-|+.+|.. .++|.-++...++.. ..|. ......
T Consensus 121 PTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag~~---tvYlsFDG~~e~~~~~~~~eIk~-alen~r 196 (475)
T COG1964 121 PTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAGVN---TVYLSFDGVTPKTNWKNHWEIKQ-ALENCR 196 (475)
T ss_pred ccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcCCc---EEEEecCCCCCCchhhHhhhhHH-HHHHHH
Confidence 3445688899999999999 788999986432 25567788889964 677776665544332 2344 334444
Q ss_pred hcCCe-EEE
Q 023192 250 QEGYR-ILG 257 (286)
Q Consensus 250 ~~Gy~-i~~ 257 (286)
+.|.. ++.
T Consensus 197 ~~g~~svVL 205 (475)
T COG1964 197 KAGLPSVVL 205 (475)
T ss_pred hcCCCcEEE
Confidence 56655 443
Done!