BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023193
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 76/138 (55%), Gaps = 2/138 (1%)
Query: 131 LKYVNFRENQLSGAFPSLIFN-KSSLQLLDFAHNTLSDEIPANICSNLP-FLEILSLSQN 188
LK ++ N+ SG P + N +SL LD + N S I N+C N L+ L L N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 189 MFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGN 248
F G IP TLSNC+ L L L +N SG IP +G+L+KL+ L L N L+GEIPQE
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 249 LAELEQMSLSENKLQGMI 266
+ LE + L N L G I
Sbjct: 462 VKTLETLILDFNDLTGEI 479
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Query: 119 GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
G IP + L ++ N LSG PS + + S L+ L N L EIP + +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VK 463
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
LE L L N G IPS LSNCT L +SL N +G IPK IG L L L L N
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 239 QGEIPQEFGNLAELEQMSLSENKLQGMI 266
G IP E G+ L + L+ N G I
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 105/258 (40%), Gaps = 50/258 (19%)
Query: 65 RTLVCNWTGVTCDVHSH-----RVTILNISRLNLTGTIPXXXXXXXXXXXXXXXXXXXXG 119
TL+ ++ +T ++ S + +++S LTG IP G
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 120 SIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKS-------------------------- 153
+IP+ + +L +++ N +G P+ +F +S
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Query: 154 -SLQLLDFAH------NTLSDEIPANICSNL------PFLE------ILSLSQNMFHGGI 194
+ LL+F N LS P NI S + P + L +S NM G I
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 645
Query: 195 PSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQ 254
P + + YL L+L +ND SG+IP E+G+L L L L N+L G IPQ L L +
Sbjct: 646 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 705
Query: 255 MSLSENKLQGMIINFLQF 272
+ LS N L G I QF
Sbjct: 706 IDLSNNNLSGPIPEMGQF 723
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 119 GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
G AI LK +N NQ G P L SLQ L A N + EIP +
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKE-IGNLNKLKRLYLGRNR 237
L L LS N F+G +P +C+ L+ L+L N+FSG +P + + + LK L L N
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 238 LQGEIPQEFGNL-AELEQMSLSENKLQGMII 267
GE+P+ NL A L + LS N G I+
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 139 NQLSGAFP-SLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGI-PS 196
N SG P + L++LD + N S E+P ++ + L L LS N F G I P+
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 197 TLSNC-TYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQM 255
N LQ+L L N F+G IP + N ++L L+L N L G IP G+L++L +
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 256 SLSENKLQGMIINFLQF 272
L N L+G I L +
Sbjct: 445 KLWLNMLEGEIPQELMY 461
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 119 GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
G+IPS++ L+ + N L G P + +L+ L N L+ EIP+ + SN
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCT 487
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
L +SLS N G IP + L L L N FSG IP E+G+ L L L N
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 239 QGEIP 243
G IP
Sbjct: 548 NGTIP 552
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 109/290 (37%), Gaps = 70/290 (24%)
Query: 54 PTNFLAKNWNTRTLVCNWTGVTCDVHSHRVTILNISRLNLT---GTIPXXXXXXXXXXXX 110
P L +W++ C + GVTC +VT +++S L +
Sbjct: 22 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 79
Query: 111 XXXXXXXXGSIPSAIFGTYTLKYVNFRENQLSGA------------------------FP 146
GS+ S + +L ++ N LSG FP
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 147 SLI---FNKSSLQLLDFAHNT---------------------------LSDEIPANICSN 176
+ +SL++LD + N+ +S ++ + C N
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 198
Query: 177 LPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRN 236
L FL++ S N F GIP L +C+ LQ L + N SG + I +LK L + N
Sbjct: 199 LEFLDV---SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 237 RLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIRSLVL 286
+ G IP L L+ +SL+ENK G I +FL S AC + L L
Sbjct: 255 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL----SGACDTLTGLDL 298
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 127 GTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIP-ANICSNLPFLEILSL 185
G LK++ N++SG + +L+ LD + N S IP CS L L+I
Sbjct: 173 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDI--- 227
Query: 186 SQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQE 245
S N G +S CT L+ L++ N F G IP L L+ L L N+ GEIP
Sbjct: 228 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDF 285
Query: 246 F-GNLAELEQMSLSENKLQGMIINFL 270
G L + LS N G + F
Sbjct: 286 LSGACDTLTGLDLSGNHFYGAVPPFF 311
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 76/138 (55%), Gaps = 2/138 (1%)
Query: 131 LKYVNFRENQLSGAFPSLIFN-KSSLQLLDFAHNTLSDEIPANICSNLP-FLEILSLSQN 188
LK ++ N+ SG P + N +SL LD + N S I N+C N L+ L L N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 189 MFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGN 248
F G IP TLSNC+ L L L +N SG IP +G+L+KL+ L L N L+GEIPQE
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 249 LAELEQMSLSENKLQGMI 266
+ LE + L N L G I
Sbjct: 465 VKTLETLILDFNDLTGEI 482
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Query: 119 GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
G IP + L ++ N LSG PS + + S L+ L N L EIP + +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VK 466
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
LE L L N G IPS LSNCT L +SL N +G IPK IG L L L L N
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 239 QGEIPQEFGNLAELEQMSLSENKLQGMI 266
G IP E G+ L + L+ N G I
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 105/258 (40%), Gaps = 50/258 (19%)
Query: 65 RTLVCNWTGVTCDVHSH-----RVTILNISRLNLTGTIPXXXXXXXXXXXXXXXXXXXXG 119
TL+ ++ +T ++ S + +++S LTG IP G
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 120 SIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKS-------------------------- 153
+IP+ + +L +++ N +G P+ +F +S
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 154 -SLQLLDFAH------NTLSDEIPANICSNL------PFLE------ILSLSQNMFHGGI 194
+ LL+F N LS P NI S + P + L +S NM G I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 195 PSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQ 254
P + + YL L+L +ND SG+IP E+G+L L L L N+L G IPQ L L +
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 255 MSLSENKLQGMIINFLQF 272
+ LS N L G I QF
Sbjct: 709 IDLSNNNLSGPIPEMGQF 726
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 119 GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
G AI LK +N NQ G P L SLQ L A N + EIP +
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKE-IGNLNKLKRLYLGRNR 237
L L LS N F+G +P +C+ L+ L+L N+FSG +P + + + LK L L N
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 238 LQGEIPQEFGNL-AELEQMSLSENKLQGMII 267
GE+P+ NL A L + LS N G I+
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 139 NQLSGAFP-SLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGI-PS 196
N SG P + L++LD + N S E+P ++ + L L LS N F G I P+
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 197 TLSNC-TYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQM 255
N LQ+L L N F+G IP + N ++L L+L N L G IP G+L++L +
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 256 SLSENKLQGMIINFLQF 272
L N L+G I L +
Sbjct: 448 KLWLNMLEGEIPQELMY 464
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 119 GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
G+IPS++ L+ + N L G P + +L+ L N L+ EIP+ + SN
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCT 490
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
L +SLS N G IP + L L L N FSG IP E+G+ L L L N
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 239 QGEIP 243
G IP
Sbjct: 551 NGTIP 555
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 109/290 (37%), Gaps = 70/290 (24%)
Query: 54 PTNFLAKNWNTRTLVCNWTGVTCDVHSHRVTILNISRLNLT---GTIPXXXXXXXXXXXX 110
P L +W++ C + GVTC +VT +++S L +
Sbjct: 25 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82
Query: 111 XXXXXXXXGSIPSAIFGTYTLKYVNFRENQLSGA------------------------FP 146
GS+ S + +L ++ N LSG FP
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 147 SLI---FNKSSLQLLDFAHNT---------------------------LSDEIPANICSN 176
+ +SL++LD + N+ +S ++ + C N
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201
Query: 177 LPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRN 236
L FL++ S N F GIP L +C+ LQ L + N SG + I +LK L + N
Sbjct: 202 LEFLDV---SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 237 RLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIRSLVL 286
+ G IP L L+ +SL+ENK G I +FL S AC + L L
Sbjct: 258 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL----SGACDTLTGLDL 301
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 127 GTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIP-ANICSNLPFLEILSL 185
G LK++ N++SG + +L+ LD + N S IP CS L L+I
Sbjct: 176 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDI--- 230
Query: 186 SQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQE 245
S N G +S CT L+ L++ N F G IP L L+ L L N+ GEIP
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDF 288
Query: 246 F-GNLAELEQMSLSENKLQGMIINFL 270
G L + LS N G + F
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVPPFF 314
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 113/303 (37%), Gaps = 65/303 (21%)
Query: 39 DQDGLLALKAHITHDPTNFLAKNWNTRTLVCN--WTGVTCDV--HSHRVTILNISRLNL- 93
D+ LL +K + +PT +W T CN W GV CD ++RV L++S LNL
Sbjct: 7 DKQALLQIKKDL-GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 94 --------------------------TGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFG 127
G IP G+IP +
Sbjct: 64 KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 128 TYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQ 187
TL ++F N LSG P I + +L + F N +S IP + S +++S+
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 188 NMFHGGIPSTLSNCTYL-----------------------QKLSLPYNDFSGAIPKEIGN 224
N G IP T +N QK+ L N + + K +G
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL 242
Query: 225 LNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMII---NFLQF----YSSSA 277
L L L NR+ G +PQ L L +++S N L G I N +F Y+++
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Query: 278 CFC 280
C C
Sbjct: 303 CLC 305
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 29/163 (17%)
Query: 123 SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEI 182
SA+ G +L+ +NF NQ++ P + N ++L+ LD + N +SD ++ + L LE
Sbjct: 145 SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLES 199
Query: 183 LSLSQNMFHGGIP--------------------STLSNCTYLQKLSLPYNDFSGAIPKEI 222
L + N P TL++ T L L L N S P +
Sbjct: 200 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 257
Query: 223 GNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265
L KL L LG N++ P L L + L+EN+L+ +
Sbjct: 258 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 298
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 120 SIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNK-SSLQLLDFAHNTLSDEIPANICSNLP 178
+IPS I K ++ + N+LS + PS F++ + L+LL N L +PA I L
Sbjct: 30 AIPSNIPADT--KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK 85
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
LE L ++ N L +L L N P+ +L KL L LG N L
Sbjct: 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 239 QGEIPQEFGNLAELEQMSLSENKLQ 263
Q F L L+++ L N+L+
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLK 170
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 120 SIPSAIFGTYT-LKYVNFRENQLSGAFPSLIFNK-SSLQLLDFAHNTLSDEIPANICSNL 177
S+PS F T L+ + +N+L P+ IF + +L+ L N L +P + L
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQL 108
Query: 178 PFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEI-GNLNKLKRLYLGRN 236
L L L +N P + T L LSL YN+ ++PK + L LK L L N
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNN 167
Query: 237 RLQGEIPQEFGNLAELEQMSLSENKLQ 263
+L+ F L EL+ + L N+L+
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 193 GIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAEL 252
IPS + T +KL L N S K L KL+ LYL N+LQ F L L
Sbjct: 30 AIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 253 EQMSLSENKLQGMII 267
E + +++NKLQ + I
Sbjct: 88 ETLWVTDNKLQALPI 102
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 123 SAIFGTYTLKYVN---FRENQLSGAFPSLIFNK--SSLQLLDFAHNTLSDEIPANICSNL 177
S G TLK + + N L F + K SSL+ LD + N+L+ C+
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427
Query: 178 PFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNR 237
+ +L+LS NM G + L + L +N+ +IPK++ +L L+ L + N+
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDL---HNNRIMSIPKDVTHLQALQELNVASNQ 484
Query: 238 LQGEIPQEFGNLAELEQMSLSEN 260
L+ F L L+ + L +N
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 33/165 (20%)
Query: 123 SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFA--------------------- 161
SA+ G +L+ ++F NQ++ P + N ++L+ LD +
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 162 -HNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPK 220
+N +SD P I +N L+ LSL+ N TL++ T L L L N S P
Sbjct: 203 TNNQISDITPLGILTN---LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 256
Query: 221 EIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265
+ L KL L LG N++ P L L + L+EN+L+ +
Sbjct: 257 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 298
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 33/165 (20%)
Query: 123 SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFA--------------------- 161
SA+ G +L+ ++F NQ++ P + N ++L+ LD +
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 162 -HNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPK 220
+N +SD P I +N L+ LSL+ N TL++ T L L L N S P
Sbjct: 203 TNNQISDITPLGILTN---LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 256
Query: 221 EIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265
+ L KL L LG N++ P L L + L+EN+L+ +
Sbjct: 257 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 298
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 149 IFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLS 208
F+ LQ+LD + + I +L L L L+ N S + LQKL
Sbjct: 72 FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130
Query: 209 LPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG-EIPQEFGNLAELEQMSLSENKLQGM 265
+ + IG+L LK L + N +Q ++P+ F NL LE + LS NK+Q +
Sbjct: 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 1/141 (0%)
Query: 123 SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEI 182
S L Y++ AF + SSL++L A N+ + +I + L L
Sbjct: 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498
Query: 183 LSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEI 242
L LSQ P+ ++ + LQ L++ +N+F LN L+ L N +
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558
Query: 243 PQEFGNL-AELEQMSLSENKL 262
QE + + L ++L++N
Sbjct: 559 KQELQHFPSSLAFLNLTQNDF 579
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 149 IFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLS 208
F+ LQ+LD + + I +L L L L+ N S + LQKL
Sbjct: 48 FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 209 LPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG-EIPQEFGNLAELEQMSLSENKLQGM 265
+ + IG+L LK L + N +Q ++P+ F NL LE + LS NK+Q +
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%)
Query: 123 SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEI 182
S L Y++ AF + SSL++L A N+ + +I + L L
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 183 LSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEI 242
L LSQ P+ ++ + LQ L++ N L L++++L N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534
Query: 243 PQ 244
P+
Sbjct: 535 PR 536
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 149 IFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLS 208
F+ LQ+LD + + I +L L L L+ N S + LQKL
Sbjct: 48 FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 209 LPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG-EIPQEFGNLAELEQMSLSENKLQGM 265
+ + IG+L LK L + N +Q ++P+ F NL LE + LS NK+Q +
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 1/139 (0%)
Query: 123 SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEI 182
S L Y++ AF + SSL++L A N+ + +I + L L
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 183 LSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEI 242
L LSQ P+ ++ + LQ L++ +N+F LN L+ L N +
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 243 PQEFGNL-AELEQMSLSEN 260
QE + + L ++L++N
Sbjct: 535 KQELQHFPSSLAFLNLTQN 553
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 150 FNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSL 209
F+ LQ+LD + + I +L L L L+ N S + LQKL
Sbjct: 50 FSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 210 PYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG-EIPQEFGNLAELEQMSLSENKLQGM 265
+ + IG+L LK L + N +Q ++P+ F NL LE + LS NK+Q +
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 150 FNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSL 209
F+ LQ+LD + + I +L L L L+ N S + LQKL
Sbjct: 51 FSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 210 PYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG-EIPQEFGNLAELEQMSLSENKLQGM 265
+ + IG+L LK L + N +Q ++P+ F NL LE + LS NK+Q +
Sbjct: 110 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 150 FNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSL 209
F+ LQ+LD + + I +L L L L+ N S + LQKL
Sbjct: 50 FSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 210 PYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG-EIPQEFGNLAELEQMSLSENKLQGM 265
+ + IG+L LK L + N +Q ++P+ F NL LE + LS NK+Q +
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 150 FNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSL 209
F+ LQ+LD + + I +L L L L+ N S + LQKL
Sbjct: 49 FSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 210 PYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG-EIPQEFGNLAELEQMSLSENKLQGM 265
+ + IG+L LK L + N +Q ++P+ F NL LE + LS NK+Q +
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 150 FNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSL 209
F+ LQ+LD + + I +L L L L+ N S + LQKL
Sbjct: 51 FSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 210 PYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG-EIPQEFGNLAELEQMSLSENKLQGM 265
+ + IG+L LK L + N +Q ++P+ F NL LE + LS NK+Q +
Sbjct: 110 LETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 130 TLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNM 189
TL+ ++ N++S S++ ++L+ L +N +SD P I +N L+ LSL+ N
Sbjct: 177 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQ 231
Query: 190 FHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNL 249
TL++ T L L L N S P + L KL L LG N++ P L
Sbjct: 232 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 285
Query: 250 AELEQMSLSENKLQGM 265
L + L+EN+L+ +
Sbjct: 286 TALTNLELNENQLEDI 301
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 151 NKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLP 210
N S LQ LD + + + I L L L L+ N P + S T L+ L
Sbjct: 49 NFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 107
Query: 211 YNDFSGAIPKEIGNLNKLKRLYLGRNRLQG-EIPQEFGNLAELEQMSLSENKLQGMIINF 269
+ IG L LK+L + N + ++P F NL L + LS N +Q + +N
Sbjct: 108 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 167
Query: 270 LQF 272
LQF
Sbjct: 168 LQF 170
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 130 TLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNM 189
TL+ ++ N++S S++ ++L+ L +N +SD P I +N L+ LSL+ N
Sbjct: 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQ 232
Query: 190 FHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNL 249
TL++ T L L L N S P + L KL L LG N++ P L
Sbjct: 233 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286
Query: 250 AELEQMSLSENKLQGM 265
L + L+EN+L+ +
Sbjct: 287 TALTNLELNENQLEDI 302
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 151 NKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLP 210
N S LQ LD + + + I L L L L+ N P + S T L+ L
Sbjct: 54 NFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112
Query: 211 YNDFSGAIPKEIGNLNKLKRLYLGRNRLQG-EIPQEFGNLAELEQMSLSENKLQGMIINF 269
+ IG L LK+L + N + ++P F NL L + LS N +Q + +N
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172
Query: 270 LQF 272
LQF
Sbjct: 173 LQF 175
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 130 TLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNM 189
TL+ ++ N++S S++ ++L+ L +N +SD P I +N L+ LSL+ N
Sbjct: 173 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQ 227
Query: 190 FHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNL 249
TL++ T L L L N S P + L KL L LG N++ P L
Sbjct: 228 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 281
Query: 250 AELEQMSLSENKLQGM 265
L + L+EN+L+ +
Sbjct: 282 TALTNLELNENQLEDI 297
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 130 TLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNM 189
TL+ ++ N++S S++ ++L+ L +N +SD P I +N L+ LSL+ N
Sbjct: 173 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQ 227
Query: 190 FHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNL 249
TL++ T L L L N S P + L KL L LG N++ P L
Sbjct: 228 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 281
Query: 250 AELEQMSLSENKLQGM 265
L + L+EN+L+ +
Sbjct: 282 TALTNLELNENQLEDI 297
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 169 IPANICSNLPFLEILSLSQNMFHG---GIPSTLSNCTYLQKLSLPYNDFSGAIPKEI-GN 224
+P + L L+ L L +N G+ L+N TYL Y++ ++PK +
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL----YHNQLQSLPKGVFDK 155
Query: 225 LNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265
L L RL L N+LQ F L +L+Q+SL++N+L+ +
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 3/146 (2%)
Query: 120 SIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPF 179
S+PS I + ++ + L+ + + L L+ +N L + A + +L
Sbjct: 28 SVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84
Query: 180 LEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQ 239
L L L+ N + T L KL L N L KLK L L N+LQ
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Query: 240 GEIPQEFGNLAELEQMSLSENKLQGM 265
F L L+ +SLS N+LQ +
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 120 SIPSAIFGTYT-LKYVNFRENQLSGAFPSLIFNK-SSLQLLDFAHNTLSDEIPANICSNL 177
S+P +F T L + NQL + PS +F++ + L+ L N L IPA L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154
Query: 178 PFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFS 215
L+ LSLS N LQ ++L N F
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 3/146 (2%)
Query: 120 SIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPF 179
S+PS I + ++ + L+ + + L L+ +N L + A + +L
Sbjct: 28 SVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84
Query: 180 LEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQ 239
L L L+ N + T L KL L N L KLK L L N+LQ
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Query: 240 GEIPQEFGNLAELEQMSLSENKLQGM 265
F L L+ +SLS N+LQ +
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 120 SIPSAIFGTYT-LKYVNFRENQLSGAFPSLIFNK-SSLQLLDFAHNTLSDEIPANICSNL 177
S+P +F T L + NQL + PS +F++ + L+ L N L IPA L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154
Query: 178 PFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFS 215
L+ LSLS N LQ ++L N F
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 3/139 (2%)
Query: 123 SAIFGTYTLKYVNFRENQLSGAFPSLIFNK-SSLQLLDFAHNTLSDEIPANICSNLPFLE 181
SA+ L Y+ NQL + P+ +F+K ++L+ L N L +P + L L
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLT 136
Query: 182 ILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGE 241
L+L+ N T L +L L YN L +LK L L +N+L+
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 242 IPQEFGNLAELEQMSLSEN 260
F L L+ + L +N
Sbjct: 197 PDGVFDRLTSLQYIWLHDN 215
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 169 IPANICSNLPFLEILSLSQNMFHG---GIPSTLSNCTYLQKLSLPYNDFSGAIPKEI-GN 224
+P + L L+ L L +N G+ L+N TYL +L +N ++PK +
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL---NLAHNQLQ-SLPKGVFDK 155
Query: 225 LNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265
L L L L N+LQ F L +L+ + L +N+L+ +
Sbjct: 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 177 LPFLEILSLSQNMFHG-GIPSTLSNCTYL-----QKLSLPYNDFSGAIPKEIGNLNKLKR 230
LP + L+L N H L+N TYL Q SLP F L LK
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFD--------KLTNLKE 113
Query: 231 LYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265
L L N+LQ F L L ++L+ N+LQ +
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 173 ICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEI-GNLNKLKRL 231
+ S+ LE L+L+QN + + T+L KL+L N F G+I + NL+KL+ L
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVL 352
Query: 232 YLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265
L N ++ Q F L L++++L N+L+ +
Sbjct: 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 131 LKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMF 190
+K + ++++ S+ + + L+ L A N + ++I N L L L+LSQN F
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLSQN-F 334
Query: 191 HGGIPSTL-SNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNL 249
G I S + N L+ L L YN + L LK L L N+L+ F L
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394
Query: 250 AELEQMSLSEN 260
L+++ L N
Sbjct: 395 TSLQKIWLHTN 405
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 169 IPANICSNLPFLEILSLS-QNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNK 227
+P I S+ LE+ S Q++ HG T L KLSL N L K
Sbjct: 22 VPTGIPSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 228 LKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265
L LYL N+LQ F L +L++++L N+L+ +
Sbjct: 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV 115
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Query: 160 FAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYN-DFSGAI 218
F H +PA + L IL L N G + + T L++L L N
Sbjct: 37 FLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD 96
Query: 219 PKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIIN 268
P L L L+L R LQ P F LA L+ + L +N LQ + N
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDN 146
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 1/143 (0%)
Query: 121 IPSAIFGT-YTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPF 179
+P+A F + L + N L+G + + L+ LD + N + L
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGH 105
Query: 180 LEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQ 239
L L L + P LQ L L N+ +L L L+L NR+
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP 165
Query: 240 GEIPQEFGNLAELEQMSLSENKL 262
F L L+++ L +N +
Sbjct: 166 SVPEHAFRGLHSLDRLLLHQNHV 188
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Query: 134 VNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGG 193
+N NQL P+ S L +LD N++S P +C LP L++L+L N
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILPLLKVLNLQHNELSQI 88
Query: 194 IPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
T CT L +L L N N L +L L N L
Sbjct: 89 SDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGL 133
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 176 NLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKE--IGNLNKLKRLYL 233
NLP L IL L + + P +L +L L + S A+ K+ NL L RL L
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 234 GRNRLQG-EIPQEFGNLAELEQMSLSENK-----------LQGMIINFLQFYSSS 276
+N+++ + FG L L+ + S N+ LQG ++F ++S
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 177 LPFLEILSLSQNMFHG-GIPSTLSNCTYLQKLSLPYNDFSGAIPKEI-----GNLNKLKR 230
+P L+IL L+QN F T S L++L L N A E+ L+ L+
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 231 LYLGRNRLQGEIPQEFGNLAELEQMSLSENKL 262
LYL N L P F +L L +SL+ N+L
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 3/137 (2%)
Query: 131 LKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMF 190
L+Y+N N+ G L+LLD A L + P + NL L +L+LS +
Sbjct: 377 LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLL 436
Query: 191 HGGIPSTLSNCTYLQKLSLPYNDF-SGAIPKE--IGNLNKLKRLYLGRNRLQGEIPQEFG 247
L+ L+ L+L N F G+I K + + L+ L L L Q F
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFH 496
Query: 248 NLAELEQMSLSENKLQG 264
L + + LS N L G
Sbjct: 497 GLRNVNHLDLSHNSLTG 513
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 154 SLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYND 213
SLQ LD + N++S + CS L L++S N+ I L ++ L L N
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK 432
Query: 214 FSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSEN 260
+IPK++ L L+ L + N+L+ F L L+++ L N
Sbjct: 433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 134 VNFRENQLSGAFPSLIFNK-SSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHG 192
+N NQL P+ F + S L LD NT+S P +C LP L++L+L N
Sbjct: 30 LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQ 87
Query: 193 GIPSTLSNCTYLQKLSLPYN 212
T + CT L +L L N
Sbjct: 88 LSDKTFAFCTNLTELHLMSN 107
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%)
Query: 123 SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEI 182
S L Y++ AF + SSL++L A N+ + +I + L L
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 183 LSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEI 242
L LSQ P+ ++ + LQ L++ +N+F LN L+ L N +
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239
Query: 243 PQE 245
QE
Sbjct: 240 KQE 242
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 134 VNFRENQLSGAFPSLIFNK-SSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHG 192
+N NQL P+ F + S L LD NT+S P +C LP L++L+L N
Sbjct: 40 LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQ 97
Query: 193 GIPSTLSNCTYLQKLSLPYN 212
T + CT L +L L N
Sbjct: 98 LSDKTFAFCTNLTELHLMSN 117
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 134 VNFRENQLSGAFPSLIFNK-SSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHG 192
+N NQL P+ F + S L LD NT+S P +C LP L++L+L N
Sbjct: 35 LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQ 92
Query: 193 GIPSTLSNCTYLQKLSLPYN 212
T + CT L +L L N
Sbjct: 93 LSDKTFAFCTNLTELHLMSN 112
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 130 TLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNM 189
+L Y NQ++ P + N + L L +N ++D P S L +LEI N
Sbjct: 200 SLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSPLANLSQLTWLEI---GTNQ 254
Query: 190 FHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNL 249
+ + + T L+ L++ N S + NL++L L+L N+L E + G L
Sbjct: 255 ISD--INAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGL 310
Query: 250 AELEQMSLSENKLQGM 265
L + LS+N + +
Sbjct: 311 TNLTTLFLSQNHITDI 326
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 187 QNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEF 246
QN+ +P+ + T Q+L L N + P +L L++LY N+L F
Sbjct: 20 QNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77
Query: 247 GNLAELEQMSLSENKLQGM 265
L +L Q+ L++N L+ +
Sbjct: 78 DKLTQLTQLDLNDNHLKSI 96
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Query: 131 LKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMF 190
L+ +N N+ G L+LLD A L P + NL FL++L+L+
Sbjct: 375 LQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFL 434
Query: 191 HGGIPSTLSNCTYLQKLSLPYNDF-SGAIPKE--IGNLNKLKRLYLGRNRLQGEIPQEFG 247
L+ L+ L+L N F G I K + + L+ L L L Q F
Sbjct: 435 DTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFH 494
Query: 248 NLAELEQMSLSENKL 262
+L ++ + LS N L
Sbjct: 495 SLGKMSHVDLSHNSL 509
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 15/171 (8%)
Query: 121 IPSAIFGTYT-LKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPF 179
I S F +T L+ ++ L G PS + + L+ L + N D++ +N P
Sbjct: 266 ISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF-DQLCQISAANFPS 323
Query: 180 LEILSLSQNM--FHGGIPSTLSNCTYLQKLSLPYNDF--SGAIPKEIGNLNKLKRLYLGR 235
L L + N+ H G+ L LQ L L +ND S ++ NL+ L+ L L
Sbjct: 324 LTHLYIRGNVKKLHLGV-GCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSH 382
Query: 236 NRLQGEIPQEFGNLAELEQMSLSENKLQ-------GMIINFLQFYSSSACF 279
N G Q F +LE + L+ +L ++FLQ + + CF
Sbjct: 383 NEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCF 433
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 11/151 (7%)
Query: 119 GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
+PS + G TLK + N+ N SL L NT E+ NL
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 179 FLEILSLSQNMFHGGIPST------LSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLY 232
L L LS H I ++ L N ++LQ L+L YN+ + +L+ L
Sbjct: 351 NLRELDLS----HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 233 LGRNRLQGEIPQE-FGNLAELEQMSLSENKL 262
L RL+ + Q F NL L+ ++LS + L
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 140 QLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLS 199
Q+ G P L LD +HN L +P + LP L +L +S N L
Sbjct: 71 QVDGTLPVL-------GTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 200 NCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGN-LAELEQMSLS 258
LQ+L L N+ P + KL++L L N+L E+P N L L+ + L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQ 180
Query: 259 ENKLQGMIINF 269
EN L + F
Sbjct: 181 ENSLYTIPKGF 191
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 120 SIP-SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
S+P A+ G L+ + + N+L P L+ L+ L A+N L+ E+PA + + L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLE 172
Query: 179 FLEILSLSQNMFH 191
L+ L L +N +
Sbjct: 173 NLDTLLLQENSLY 185
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 194 IPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELE 253
+P LSN +L + L N S + N+ +L L L NRL+ P+ F L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 254 QMSLSENKL 262
+SL N +
Sbjct: 106 LLSLHGNDI 114
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 193 GIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAEL 252
GIP ++ +L L N F+ +PKE+ N L + L NR+ Q F N+ +L
Sbjct: 28 GIPRDVT------ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 253 EQMSLSENKLQ 263
+ LS N+L+
Sbjct: 81 LTLILSYNRLR 91
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 146 PSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQ 205
P + N L L+D ++N +S + SN+ L L LS N P T L+
Sbjct: 47 PKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 206 KLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265
LSL ND S +L+ L L +G N L + N+ L SE K G+
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC-----NMQWLSDWVKSEYKEPGI 160
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 140 QLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLS 199
Q+ G P L LD +HN L +P + LP L +L +S N L
Sbjct: 71 QVDGTLPVL-------GTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 200 NCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGN-LAELEQMSLS 258
LQ+L L N+ P + KL++L L N+L E+P N L L+ + L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQ 180
Query: 259 ENKLQGMIINF 269
EN L + F
Sbjct: 181 ENSLYTIPKGF 191
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 120 SIP-SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
S+P A+ G L+ + + N+L P L+ L+ L A+N L+ E+PA + + L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLE 172
Query: 179 FLEILSLSQNMFH 191
L+ L L +N +
Sbjct: 173 NLDTLLLQENSLY 185
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 140 QLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLS 199
Q+ G P L LD +HN L +P + LP L +L +S N L
Sbjct: 71 QVDGTLPVL-------GTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 200 NCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGN-LAELEQMSLS 258
LQ+L L N+ P + KL++L L N+L E+P N L L+ + L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQ 180
Query: 259 ENKLQGMIINF 269
EN L + F
Sbjct: 181 ENSLYTIPKGF 191
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 120 SIP-SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
S+P A+ G L+ + + N+L P L+ L+ L A+N L+ E+PA + + L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLE 172
Query: 179 FLEILSLSQNMFH 191
L+ L L +N +
Sbjct: 173 NLDTLLLQENSLY 185
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 140 QLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLS 199
Q+ G P L LD +HN L +P + LP L +L +S N L
Sbjct: 71 QVDGTLPVL-------GTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 200 NCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGN-LAELEQMSLS 258
LQ+L L N+ P + KL++L L N+L E+P N L L+ + L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQ 180
Query: 259 ENKLQGMIINF 269
EN L + F
Sbjct: 181 ENSLYTIPKGF 191
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 120 SIP-SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
S+P A+ G L+ + + N+L P L+ L+ L A+N L+ E+PA + + L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLE 172
Query: 179 FLEILSLSQNMFH 191
L+ L L +N +
Sbjct: 173 NLDTLLLQENSLY 185
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 193 GIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAEL 252
GIP+T Q L L N + P L +L RL L N+L F L +L
Sbjct: 27 GIPTTT------QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80
Query: 253 EQMSLSENKLQGM 265
Q+SL++N+L+ +
Sbjct: 81 TQLSLNDNQLKSI 93
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 29/147 (19%)
Query: 120 SIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNK-SSLQLLDFAHNTLSDEIPANICSNLP 178
S+P+ I T Y++ N L + P+ +F++ +SL L N L +P + + L
Sbjct: 21 SVPTGIPAQTT--YLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLT 76
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
L L+LS N SLP F L +LK L L N+L
Sbjct: 77 SLTYLNLSTNQLQ----------------SLPNGVFD--------KLTQLKELALNTNQL 112
Query: 239 QGEIPQEFGNLAELEQMSLSENKLQGM 265
Q F L +L+ + L +N+L+ +
Sbjct: 113 QSLPDGVFDKLTQLKDLRLYQNQLKSV 139
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 193 GIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAEL 252
GIP+T Q L L N + P L +L RL L N+L F L +L
Sbjct: 27 GIPTTT------QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80
Query: 253 EQMSLSENKLQGM 265
Q+SL++N+L+ +
Sbjct: 81 TQLSLNDNQLKSI 93
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 193 GIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAEL 252
GIP+T Q L L N + P L +L RL L N+L F L +L
Sbjct: 35 GIPTTT------QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 88
Query: 253 EQMSLSENKLQGM 265
Q+SL++N+L+ +
Sbjct: 89 TQLSLNDNQLKSI 101
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 223 GNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQ 263
G L L +L L RN+L G P F + ++++ L ENK++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 119 GSIPS-AIFGTYT-LKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSN 176
G I S +FG L + + NQL+G P+ S +Q L N + EI +
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLG 100
Query: 177 LPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFS 215
L L+ L+L N +P + + L L+L N F+
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 119 GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
G++P + GT L + NQL + P L +L +LD + N L+ +P L
Sbjct: 74 GTLP--VLGTLDLSH-----NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
L+ L L N P L+ L+KLSL ND + + L L L L N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
Query: 239 QGEIPQEF 246
IP+ F
Sbjct: 185 Y-TIPKGF 191
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 32/117 (27%)
Query: 176 NLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGR 235
+L L+I ++S N+F +L +L L N + +P EI NL+ L+ L L
Sbjct: 230 DLSNLQIFNISANIF---------KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279
Query: 236 NRLQG----------------------EIPQEFGNLAELEQMSLSENKLQGMIINFL 270
NRL +P EFGNL L+ + + N L+ + L
Sbjct: 280 NRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 191 HGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIP-QEFGNL 249
H +P+ + T Q L L N + P +L LK LYLG N+L G +P F +L
Sbjct: 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 250 AELEQMSLSENKL 262
+L + L N+L
Sbjct: 88 TQLTVLDLGTNQL 100
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 169 IPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEI-GNLNK 227
+PA I +N +IL L N P + L++L L N GA+P + +L +
Sbjct: 34 VPAGIPTNA---QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQ 89
Query: 228 LKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKL 262
L L LG N+L F L L+++ + NKL
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 178 PFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNR 237
P +L L N N L L L N S P L KL+RLYL +N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 238 LQGEIPQEFGNLAELEQMSLSENKL 262
L+ E+P++ L+++ + EN++
Sbjct: 112 LK-ELPEKMP--KTLQELRVHENEI 133
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 178 PFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNR 237
P +L L N N L L L N S P L KL+RLYL +N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 238 LQGEIPQEFGNLAELEQMSLSENKL 262
L+ E+P++ L+++ + EN++
Sbjct: 112 LK-ELPEKMP--KTLQELRVHENEI 133
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 5/147 (3%)
Query: 121 IPSAIFGTYT-LKYVNFRENQLSGAFPSLIFNK-SSLQLLDFAHNTLSDEIPANICSNLP 178
IPS F + L+ + R N + + PS FN+ SL LD + I L
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
L+ L+L M + L+ L++L + N F P L+ LK+L++ +++
Sbjct: 197 NLKYLNLG--MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
Query: 239 QGEIPQEFGNLAELEQMSLSENKLQGM 265
F LA L +++L+ N L +
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLSSL 281
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Query: 162 HNTLSDEIPANICSNLPFLEILSLSQN-MFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPK 220
H+ + I A + L LE L LS N P+T L L L P
Sbjct: 63 HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 122
Query: 221 EIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265
L L+ LYL N LQ F +L L + L N++ +
Sbjct: 123 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 167
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Query: 162 HNTLSDEIPANICSNLPFLEILSLSQN-MFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPK 220
H+ + I A + L LE L LS N P+T L L L P
Sbjct: 64 HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123
Query: 221 EIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265
L L+ LYL N LQ F +L L + L N++ +
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 139 NQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFH 191
NQL G P+ ++ L L+ A+N ++ EIPAN C +E LS + N
Sbjct: 340 NQLEGKLPAF-GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 217 AIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSEN 260
A+P+ I +L L LG+NR++ EF + LE++ L+EN
Sbjct: 25 AVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNEN 66
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 119 GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
G++P + GT L + NQL + P L +L +LD + N L+ +P L
Sbjct: 74 GTLP--VLGTLDLSH-----NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
L+ L L N P L+ L+KLSL N+ + + L L L L N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 239 QGEIPQEF 246
IP+ F
Sbjct: 185 Y-TIPKGF 191
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 119 GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
G++P + GT L + NQL + P L +L +LD + N L+ +P L
Sbjct: 74 GTLP--VLGTLDLSH-----NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
L+ L L N P L+ L+KLSL N+ + + L L L L N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 239 QGEIPQEF 246
IP+ F
Sbjct: 185 Y-TIPKGF 191
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 119 GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
G++P + GT L + NQL + P L +L +LD + N L+ +P L
Sbjct: 74 GTLP--VLGTLDLSH-----NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
L+ L L N P L+ L+KLSL N+ + + L L L L N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 239 QGEIPQEF 246
IP+ F
Sbjct: 185 Y-TIPKGF 191
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 119 GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
G++P + GT L + NQL + P L +L +LD + N L+ +P L
Sbjct: 75 GTLP--VLGTLDLSH-----NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 125
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
L+ L L N P L+ L+KLSL N+ + + L L L L N L
Sbjct: 126 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Query: 239 QGEIPQEF 246
IP+ F
Sbjct: 186 Y-TIPKGF 192
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 119 GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178
G++P + GT L + NQL + P L +L +LD + N L+ +P L
Sbjct: 74 GTLP--VLGTLDLSH-----NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124
Query: 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238
L+ L L N P L+ L+KLSL N+ + + L L L L N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 239 QGEIPQEF 246
IP+ F
Sbjct: 185 Y-TIPKGF 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,748,114
Number of Sequences: 62578
Number of extensions: 243260
Number of successful extensions: 750
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 183
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)