Query 023193
Match_columns 286
No_of_seqs 260 out of 3646
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.8E-33 1.3E-37 270.7 20.1 240 36-281 27-267 (968)
2 PLN00113 leucine-rich repeat r 99.9 6.8E-26 1.5E-30 221.2 15.2 201 81-282 140-340 (968)
3 KOG4194 Membrane glycoprotein 99.8 3.1E-22 6.7E-27 174.3 2.7 201 81-282 173-373 (873)
4 KOG4194 Membrane glycoprotein 99.8 1.4E-21 3.1E-26 170.3 4.5 200 80-280 124-347 (873)
5 KOG0617 Ras suppressor protein 99.8 4.7E-22 1E-26 148.6 -4.5 183 81-270 33-219 (264)
6 KOG0617 Ras suppressor protein 99.8 1.7E-21 3.6E-26 145.7 -3.7 167 101-274 29-196 (264)
7 KOG0444 Cytoskeletal regulator 99.8 1.7E-20 3.6E-25 165.1 -2.3 194 81-280 126-345 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 1.8E-20 3.9E-25 164.9 -2.7 194 81-280 103-322 (1255)
9 KOG4237 Extracellular matrix p 99.8 6.1E-20 1.3E-24 153.3 0.1 201 81-281 67-353 (498)
10 cd00116 LRR_RI Leucine-rich re 99.7 1.6E-17 3.4E-22 142.7 3.7 205 81-285 81-313 (319)
11 KOG0472 Leucine-rich repeat pr 99.7 3.8E-19 8.3E-24 149.0 -6.6 193 81-282 68-283 (565)
12 PLN03150 hypothetical protein; 99.7 1.9E-15 4E-20 140.2 14.8 154 32-191 366-528 (623)
13 cd00116 LRR_RI Leucine-rich re 99.6 1.6E-16 3.4E-21 136.5 4.2 202 81-282 51-286 (319)
14 KOG0472 Leucine-rich repeat pr 99.6 1.2E-18 2.7E-23 146.0 -8.6 193 82-282 46-260 (565)
15 KOG0618 Serine/threonine phosp 99.6 1.2E-16 2.5E-21 146.3 0.4 194 81-281 241-483 (1081)
16 PRK15370 E3 ubiquitin-protein 99.6 7E-15 1.5E-19 137.6 11.0 163 82-264 200-381 (754)
17 PRK15387 E3 ubiquitin-protein 99.6 1.1E-14 2.5E-19 135.7 11.5 178 81-274 242-469 (788)
18 PLN03210 Resistant to P. syrin 99.6 3.4E-14 7.4E-19 140.6 15.4 190 83-281 613-832 (1153)
19 PLN03210 Resistant to P. syrin 99.6 3.1E-14 6.6E-19 140.9 15.0 195 81-280 634-899 (1153)
20 KOG0618 Serine/threonine phosp 99.6 2.9E-16 6.3E-21 143.7 -1.1 194 82-281 288-507 (1081)
21 PRK15370 E3 ubiquitin-protein 99.6 1.6E-14 3.4E-19 135.2 10.2 182 81-282 220-423 (754)
22 KOG0532 Leucine-rich repeat (L 99.5 1.8E-16 3.9E-21 138.3 -3.5 176 81-266 75-250 (722)
23 PRK15387 E3 ubiquitin-protein 99.5 8.5E-14 1.8E-18 129.9 11.4 182 81-282 222-453 (788)
24 KOG4237 Extracellular matrix p 99.5 4.1E-16 9E-21 130.6 -3.7 183 81-263 91-359 (498)
25 COG4886 Leucine-rich repeat (L 99.4 3.1E-13 6.7E-18 119.6 6.2 181 81-270 116-297 (394)
26 PLN03150 hypothetical protein; 99.3 4.1E-12 8.8E-17 118.1 8.4 108 155-263 420-528 (623)
27 KOG0532 Leucine-rich repeat (L 99.3 1.5E-13 3.3E-18 120.3 -2.0 187 86-282 55-242 (722)
28 PF14580 LRR_9: Leucine-rich r 99.3 4.4E-12 9.5E-17 98.1 5.2 108 103-215 17-126 (175)
29 COG4886 Leucine-rich repeat (L 99.3 3.8E-12 8.2E-17 112.7 5.1 189 85-283 97-286 (394)
30 PF14580 LRR_9: Leucine-rich r 99.2 1.4E-11 3E-16 95.3 5.8 128 125-258 15-148 (175)
31 KOG1909 Ran GTPase-activating 99.2 9.2E-12 2E-16 103.3 1.8 182 81-262 92-310 (382)
32 KOG3207 Beta-tubulin folding c 99.1 2.4E-11 5.2E-16 103.6 1.2 183 81-263 121-314 (505)
33 KOG1909 Ran GTPase-activating 99.1 3.3E-11 7.2E-16 100.0 1.9 111 153-264 157-284 (382)
34 KOG1259 Nischarin, modulator o 99.1 2.2E-11 4.9E-16 99.4 -0.2 132 104-242 283-415 (490)
35 PF13855 LRR_8: Leucine rich r 99.0 1.9E-10 4.1E-15 73.5 3.1 60 203-262 2-61 (61)
36 KOG3207 Beta-tubulin folding c 99.0 2.1E-11 4.5E-16 104.0 -2.0 180 102-281 118-308 (505)
37 KOG1259 Nischarin, modulator o 99.0 7.3E-11 1.6E-15 96.4 0.6 133 79-218 282-415 (490)
38 PF13855 LRR_8: Leucine rich r 98.9 8.9E-10 1.9E-14 70.4 3.6 59 179-237 2-60 (61)
39 COG5238 RNA1 Ran GTPase-activa 98.7 1.3E-08 2.8E-13 82.3 4.8 200 81-281 30-274 (388)
40 KOG0531 Protein phosphatase 1, 98.7 4.2E-09 9.2E-14 93.8 0.2 155 101-263 91-268 (414)
41 KOG0531 Protein phosphatase 1, 98.6 1.7E-09 3.8E-14 96.2 -3.2 131 102-240 69-200 (414)
42 KOG2120 SCF ubiquitin ligase, 98.6 7.5E-10 1.6E-14 90.4 -5.1 194 82-277 186-390 (419)
43 KOG1859 Leucine-rich repeat pr 98.6 8.6E-10 1.9E-14 99.8 -5.3 126 131-263 166-292 (1096)
44 KOG4579 Leucine-rich repeat (L 98.6 2E-09 4.2E-14 78.3 -3.3 117 152-272 52-168 (177)
45 KOG2120 SCF ubiquitin ligase, 98.6 1.8E-09 3.8E-14 88.3 -4.0 174 106-281 186-370 (419)
46 KOG4658 Apoptotic ATPase [Sign 98.5 1.2E-07 2.6E-12 91.0 5.6 105 106-212 546-652 (889)
47 KOG4658 Apoptotic ATPase [Sign 98.4 3.3E-07 7.2E-12 87.9 6.1 128 105-236 523-652 (889)
48 KOG4579 Leucine-rich repeat (L 98.4 2.5E-08 5.3E-13 72.6 -2.4 81 131-215 55-136 (177)
49 PF08263 LRRNT_2: Leucine rich 98.4 5.7E-07 1.2E-11 52.7 3.7 40 37-77 2-43 (43)
50 KOG1859 Leucine-rich repeat pr 98.3 1E-08 2.2E-13 93.1 -6.8 127 106-239 165-292 (1096)
51 PF12799 LRR_4: Leucine Rich r 98.3 1E-06 2.2E-11 51.8 3.7 37 227-264 2-38 (44)
52 KOG2982 Uncharacterized conser 98.3 4E-07 8.7E-12 74.7 2.1 84 105-188 71-156 (418)
53 KOG3665 ZYG-1-like serine/thre 98.2 8.7E-07 1.9E-11 83.0 3.4 189 81-272 60-272 (699)
54 KOG2982 Uncharacterized conser 98.2 6E-07 1.3E-11 73.7 1.8 176 81-256 71-285 (418)
55 KOG1644 U2-associated snRNP A' 98.2 4.1E-06 8.8E-11 65.2 5.6 105 105-212 42-150 (233)
56 COG5238 RNA1 Ran GTPase-activa 98.1 6.4E-06 1.4E-10 67.0 6.2 38 81-118 92-133 (388)
57 PF12799 LRR_4: Leucine Rich r 98.1 4.3E-06 9.3E-11 49.1 3.7 36 130-166 2-37 (44)
58 KOG1644 U2-associated snRNP A' 98.0 1.4E-05 3.1E-10 62.2 5.1 104 83-189 44-151 (233)
59 PF13306 LRR_5: Leucine rich r 97.9 5.7E-05 1.2E-09 55.6 7.1 121 125-252 8-128 (129)
60 PRK15386 type III secretion pr 97.8 6.3E-05 1.4E-09 65.8 6.9 131 81-236 52-187 (426)
61 PF13306 LRR_5: Leucine rich r 97.7 0.00013 2.7E-09 53.8 6.9 122 100-228 7-128 (129)
62 PRK15386 type III secretion pr 97.7 0.00017 3.7E-09 63.1 7.9 136 101-261 48-188 (426)
63 KOG3665 ZYG-1-like serine/thre 97.5 0.0001 2.2E-09 69.4 4.0 156 106-264 61-234 (699)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00016 3.4E-09 58.6 2.5 40 151-191 63-104 (260)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00034 7.5E-09 56.7 2.7 93 96-192 34-130 (260)
66 KOG2123 Uncharacterized conser 97.1 6E-05 1.3E-09 61.7 -1.8 100 128-232 18-123 (388)
67 KOG2123 Uncharacterized conser 97.0 6.8E-05 1.5E-09 61.4 -2.1 100 152-256 18-123 (388)
68 PF00560 LRR_1: Leucine Rich R 96.8 0.00053 1.2E-08 33.6 0.7 20 252-272 2-21 (22)
69 PF00560 LRR_1: Leucine Rich R 96.0 0.0027 5.8E-08 31.0 0.6 19 228-247 2-20 (22)
70 KOG4308 LRR-containing protein 95.9 5.8E-05 1.2E-09 68.0 -9.8 183 83-265 89-305 (478)
71 KOG4308 LRR-containing protein 95.7 0.00011 2.4E-09 66.2 -8.8 167 106-273 88-285 (478)
72 KOG1947 Leucine rich repeat pr 95.7 0.0016 3.5E-08 59.0 -1.5 37 152-188 268-305 (482)
73 PF13516 LRR_6: Leucine Rich r 95.4 0.009 2E-07 29.8 1.3 23 249-271 1-23 (24)
74 KOG3864 Uncharacterized conser 94.1 0.022 4.8E-07 44.8 1.1 33 180-212 103-135 (221)
75 smart00369 LRR_TYP Leucine-ric 93.7 0.069 1.5E-06 27.0 2.2 21 153-174 2-22 (26)
76 smart00370 LRR Leucine-rich re 93.7 0.069 1.5E-06 27.0 2.2 21 153-174 2-22 (26)
77 PF13504 LRR_7: Leucine rich r 93.6 0.051 1.1E-06 24.6 1.4 11 155-165 3-13 (17)
78 KOG1947 Leucine rich repeat pr 93.0 0.051 1.1E-06 49.2 1.8 61 201-261 242-306 (482)
79 KOG0473 Leucine-rich repeat pr 92.8 0.0028 6E-08 50.9 -5.8 86 175-263 39-124 (326)
80 smart00369 LRR_TYP Leucine-ric 92.5 0.11 2.5E-06 26.2 1.9 20 250-269 2-21 (26)
81 smart00370 LRR Leucine-rich re 92.5 0.11 2.5E-06 26.2 1.9 20 250-269 2-21 (26)
82 KOG3864 Uncharacterized conser 90.5 0.023 5E-07 44.7 -2.9 33 131-163 103-135 (221)
83 KOG0473 Leucine-rich repeat pr 89.3 0.0066 1.4E-07 48.8 -6.8 85 101-189 38-122 (326)
84 KOG4341 F-box protein containi 88.9 0.26 5.7E-06 43.2 2.0 105 175-279 317-431 (483)
85 KOG4341 F-box protein containi 88.1 0.33 7.2E-06 42.6 2.1 152 128-279 293-457 (483)
86 smart00368 LRR_RI Leucine rich 88.0 0.42 9.1E-06 24.7 1.7 22 250-271 2-23 (28)
87 smart00367 LRR_CC Leucine-rich 80.3 1.4 3.1E-05 22.1 1.6 22 249-270 1-23 (26)
88 smart00365 LRR_SD22 Leucine-ri 77.4 2 4.3E-05 21.8 1.6 14 250-263 2-15 (26)
89 KOG3763 mRNA export factor TAP 76.8 1.4 3.1E-05 40.1 1.6 13 228-240 272-284 (585)
90 smart00364 LRR_BAC Leucine-ric 74.1 2.2 4.7E-05 21.7 1.2 17 154-171 3-19 (26)
91 KOG3763 mRNA export factor TAP 73.2 2.7 5.9E-05 38.4 2.4 65 103-167 216-284 (585)
92 KOG1665 AFH1-interacting prote 47.6 28 0.0006 28.1 3.6 13 178-190 196-208 (302)
93 KOG4242 Predicted myosin-I-bin 38.7 53 0.0011 29.9 4.3 185 81-270 165-374 (553)
94 TIGR00864 PCC polycystin catio 36.8 27 0.00058 38.7 2.6 33 135-167 1-33 (2740)
95 TIGR00864 PCC polycystin catio 33.9 28 0.00061 38.6 2.2 33 184-216 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.8e-33 Score=270.66 Aligned_cols=240 Identities=38% Similarity=0.678 Sum_probs=172.5
Q ss_pred CHHhHHHHHHHHHhcCCCCCccccCCCCCCCCCCCceeeEecCCCCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccC
Q 023193 36 TTADQDGLLALKAHITHDPTNFLAKNWNTRTLVCNWTGVTCDVHSHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFN 115 (286)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~c~~~~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n 115 (286)
.+.|..++.+||+.+. +|..++.+ |....++|.|.|+.|+.. .+|+.|+++++.+.+.++..+..+++|+.|++++|
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~-w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n 103 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSN-WNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN 103 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCC-CCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence 5578999999999984 67666666 988889999999999853 68999999999999999999999999999999999
Q ss_pred CCCccCchhhh-cCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCC
Q 023193 116 QLSGSIPSAIF-GTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGI 194 (286)
Q Consensus 116 ~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~ 194 (286)
.+.+.+|..+. .+.+|++|++++|.+++..|. ..+++|++|++++|.+++.+|..+ +.+++|++|++++|.+.+.+
T Consensus 104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccC
Confidence 99888887765 788888888888877765554 245666666666666665555554 55666666666666666566
Q ss_pred CccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhcc
Q 023193 195 PSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYS 274 (286)
Q Consensus 195 p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 274 (286)
|..++++++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..++.++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence 66666666666666666666655565566666666666666666655555555566666666666665555555555555
Q ss_pred CCCceee
Q 023193 275 SSACFCI 281 (286)
Q Consensus 275 ~l~~l~l 281 (286)
+|+.+++
T Consensus 261 ~L~~L~L 267 (968)
T PLN00113 261 NLQYLFL 267 (968)
T ss_pred CCCEEEC
Confidence 5555544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=6.8e-26 Score=221.19 Aligned_cols=201 Identities=36% Similarity=0.479 Sum_probs=133.6
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+.+.+|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.++++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 44566666666666666666777777777777777776667777777777777777777776666777777777777777
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
++|.+++.+|..+ +.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+++
T Consensus 220 ~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 220 GYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred cCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 7777766666655 566677777777776666666666666666666666666666666666666666666666666666
Q ss_pred CchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
.+|..+..+++|+.|++++|.+++.+|..+..+++|+.+++.
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence 666666666666666666666666666666666555555543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.1e-22 Score=174.34 Aligned_cols=201 Identities=23% Similarity=0.222 Sum_probs=123.1
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|+|++|.|+...-..|.++.+|..|.|+.|.++..-+..|..+++|+.|++..|++.-.-...|..+++|+.|.+
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 34555555555555444455555555555555555555222334444555666666555555333344555555555555
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
..|.++ .+.++.|..+.++++|+|..|+++..-..++.+++.|+.|++++|.+....++.+...++|++|+|++|.|+.
T Consensus 253 qrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 253 QRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 555554 5555555666667777777777765555666677777777777777776666677777777777777777776
Q ss_pred CchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
..++.|..+.+|++|+|++|.++..-...|..+++|..++++
T Consensus 332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 666677777777777777777666655666666666655554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-21 Score=170.28 Aligned_cols=200 Identities=23% Similarity=0.237 Sum_probs=141.0
Q ss_pred CCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEE
Q 023193 80 SHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLD 159 (286)
Q Consensus 80 ~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 159 (286)
.++++.|+|.+|.|+....++++.++.|+.|||+.|.+...--..|..-.++++|++++|+|+......|..+.+|.+|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 36789999999999888888888889999999999988844444555567899999999999988888888999999999
Q ss_pred eecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccch-------------------
Q 023193 160 FAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPK------------------- 220 (286)
Q Consensus 160 L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~------------------- 220 (286)
|+.|.++ .+|...|..+++|+.|+|..|+|.-.--..|..+++|+.|.+..|.++..-..
T Consensus 204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 9999998 89998888899999999999988633234455555555555555555433333
Q ss_pred -----hhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCcee
Q 023193 221 -----EIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFC 280 (286)
Q Consensus 221 -----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~ 280 (286)
++.++..|+.|+|++|.|...-+..+..+++|+.|+|+.|+++...+.+|.-+..|+.+.
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 444455555555555555554455555555555555555555555555555555555444
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.80 E-value=4.7e-22 Score=148.58 Aligned_cols=183 Identities=33% Similarity=0.503 Sum_probs=158.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.+.+++|.++ .+|+.++.+.+|+.|++.+|++. .+|..+..+++|+.|+++.|++. ..|..|+.++.|++||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 67888999999998 67888999999999999999998 88999999999999999999998 89999999999999999
Q ss_pred ecCCCCC-CCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCC
Q 023193 161 AHNTLSD-EIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQ 239 (286)
Q Consensus 161 ~~n~l~~-~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 239 (286)
.+|+++. .+|..+| .+..|+.|++++|.+. .+|..++.+++|+.|.+.+|.+- ..|..++.+..|++|++++|.++
T Consensus 110 tynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 9999875 4666664 5888999999999997 88899999999999999999988 68999999999999999999999
Q ss_pred CCchhhhcCCC---CCCEEecccCcccccchHHH
Q 023193 240 GEIPQEFGNLA---ELEQMSLSENKLQGMIINFL 270 (286)
Q Consensus 240 ~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~l 270 (286)
.+|+.++.+. +=+.+.+..|++...+.+-|
T Consensus 187 -vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 187 -VLPPELANLDLVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred -ecChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence 6666666543 23466777887766555443
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=1.7e-21 Score=145.68 Aligned_cols=167 Identities=31% Similarity=0.513 Sum_probs=152.4
Q ss_pred ccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCc
Q 023193 101 LGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFL 180 (286)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 180 (286)
+..+.+++.|.+++|+++ ..|..+..+.+|+.|++++|+++ .+|..++.+++|+.|+++.|.+. .+|..+ +.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchh
Confidence 456788899999999998 78889999999999999999999 88999999999999999999997 788877 899999
Q ss_pred cEeeeeccccCC-CCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEeccc
Q 023193 181 EILSLSQNMFHG-GIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSE 259 (286)
Q Consensus 181 ~~L~l~~n~l~~-~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 259 (286)
+.|++.+|++.. .+|..|..+..|+-|++++|.+. .+|..++.+++|+.|.+..|.+. .+|..++.+..|++|.+++
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 999999999864 68888999999999999999998 78888999999999999999998 7899999999999999999
Q ss_pred CcccccchHHHhhcc
Q 023193 260 NKLQGMIINFLQFYS 274 (286)
Q Consensus 260 n~l~~~~~~~l~~l~ 274 (286)
|+++ .+|+.++.+.
T Consensus 183 nrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 183 NRLT-VLPPELANLD 196 (264)
T ss_pred ceee-ecChhhhhhh
Confidence 9997 6677777654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=1.7e-20 Score=165.11 Aligned_cols=194 Identities=28% Similarity=0.372 Sum_probs=113.5
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCC------------------
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLS------------------ 142 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------ 142 (286)
++...|+|++|+|..+.-+.|.++..|-.|++++|.+. .+|.....+.+|++|++++|.+.
T Consensus 126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 34455666666665433344556666666666666665 55666666666666666665332
Q ss_pred -------ccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCc
Q 023193 143 -------GAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFS 215 (286)
Q Consensus 143 -------~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 215 (286)
..+|..+..+.+|+.+|++.|.+. .+|+.+ ..+++|+.|+|++|.|+ .+....+.+.+|++|+++.|+++
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl-y~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL-YKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT 281 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH-hhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc
Confidence 234555555666666666666665 566665 45666777777777666 33444455556666666666666
Q ss_pred cccchhhcCCcccceeecccccCC-CCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCcee
Q 023193 216 GAIPKEIGNLNKLKRLYLGRNRLQ-GEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFC 280 (286)
Q Consensus 216 ~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~ 280 (286)
.+|.++..+++|+.|++.+|+++ .-+|..++.+.+|+.+..++|++. .+|+.+++|.+|+.+.
T Consensus 282 -~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 282 -VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLK 345 (1255)
T ss_pred -cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhc
Confidence 55666666666666666666655 234555555555555555555553 4555555555555444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=1.8e-20 Score=164.90 Aligned_cols=194 Identities=26% Similarity=0.380 Sum_probs=139.6
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
..++.+||++|.+. ..|..+...+++-.|++++|++..+....|.++.-|-+||+|+|++. .+|+.+..+..|++|+|
T Consensus 103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhc
Confidence 56777888888777 57777777777777888888877333344556777778888888877 67777777777888888
Q ss_pred ecCCCCC-------------------------CCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCc
Q 023193 161 AHNTLSD-------------------------EIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFS 215 (286)
Q Consensus 161 ~~n~l~~-------------------------~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 215 (286)
++|.+.- .+|..+ ..+.+|..++++.|.+. ..|+.+.++.+|+.|+|++|.++
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 7776531 234444 44556777777777776 66777777777777777777776
Q ss_pred cccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCccc-ccchHHHhhccCCCcee
Q 023193 216 GAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQ-GMIINFLQFYSSSACFC 280 (286)
Q Consensus 216 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~l~~l~ 280 (286)
.+....+.+.+|++|+|+.|+++ .+|.++..+++|+.|.+.+|+++ .-+|+.++++.+|.+++
T Consensus 259 -eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 259 -ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred -eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence 34444556677788888888887 78888888888888888888876 45678888887777654
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=6.1e-20 Score=153.32 Aligned_cols=201 Identities=24% Similarity=0.266 Sum_probs=154.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccC-CCCCccCCccccCCCCCCEEE
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRE-NQLSGAFPSLIFNKSSLQLLD 159 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ 159 (286)
...+.++|..|.|+...+.+|+.+++|+.|+|++|.++.+.|++|.+++++-+|.+.+ |+|+......|..+..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5678899999999988889999999999999999999999999999999988877766 888855445555555555555
Q ss_pred eecCCCCC-----------------------CCchhhhcCCCCccEeeeeccccC-------------------------
Q 023193 160 FAHNTLSD-----------------------EIPANICSNLPFLEILSLSQNMFH------------------------- 191 (286)
Q Consensus 160 L~~n~l~~-----------------------~l~~~~~~~l~~L~~L~l~~n~l~------------------------- 191 (286)
+.-|++.- .++...|..+..++.+.+..|.+.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 55555440 333333344444444444444310
Q ss_pred ------------------------------------CCCC-ccCcCCCCcceEecccCCCccccchhhcCCcccceeecc
Q 023193 192 ------------------------------------GGIP-STLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLG 234 (286)
Q Consensus 192 ------------------------------------~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 234 (286)
+..| ..|..+++|++|++++|.+++.-+.+|.+...+++|+|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 0111 224567889999999999998888899999999999999
Q ss_pred cccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceee
Q 023193 235 RNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCI 281 (286)
Q Consensus 235 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l 281 (286)
.|++...-...|..+..|+.|+|.+|+|+...|..|..+..+..+++
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 99998666778899999999999999999999999998888877654
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=1.6e-17 Score=142.70 Aligned_cols=205 Identities=21% Similarity=0.199 Sum_probs=149.5
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCC---CCEEEcccCCCCc----cCchhhhcC-CCCcEEEccCCCCCcc----CCcc
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSS---LQSLDLSFNQLSG----SIPSAIFGT-YTLKYVNFRENQLSGA----FPSL 148 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~p~~ 148 (286)
.+++.++++++.+.+..+..+..+.. |++|++++|.+.+ .+...+..+ ++|++|++++|.+++. ++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 68999999999998666666665555 9999999998873 233455667 8999999999998843 3345
Q ss_pred ccCCCCCCEEEeecCCCCCCCchhh---hcCCCCccEeeeeccccCCC----CCccCcCCCCcceEecccCCCccccchh
Q 023193 149 IFNKSSLQLLDFAHNTLSDEIPANI---CSNLPFLEILSLSQNMFHGG----IPSTLSNCTYLQKLSLPYNDFSGAIPKE 221 (286)
Q Consensus 149 ~~~l~~L~~L~L~~n~l~~~l~~~~---~~~l~~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~l~~n~l~~~~~~~ 221 (286)
+..+.+|++|++++|.+++.....+ +...++|++|++++|.+++. ++..+..+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 6677889999999999975322222 24557999999999988743 3445667889999999999988633333
Q ss_pred hc-----CCcccceeecccccCCC----CchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeeeecc
Q 023193 222 IG-----NLNKLKRLYLGRNRLQG----EIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIRSLV 285 (286)
Q Consensus 222 ~~-----~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~~l~ 285 (286)
+. ..+.|+.|++++|.+++ .+...+..+++|+++++++|+++......+.+..+-....+++|+
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc
Confidence 22 23789999999999973 345667777899999999999997765555544333333444443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=3.8e-19 Score=149.00 Aligned_cols=193 Identities=26% Similarity=0.387 Sum_probs=116.5
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEE--
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLL-- 158 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L-- 158 (286)
..++.+++.+|.+. .+|++++.+..++.++.++|++. ++|+....+.+++.++.++|.+. ..|+.++.+-.++.+
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 34667777777766 56666666666666666666665 55555555555555555555554 334444444444444
Q ss_pred ---------------------EeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccc
Q 023193 159 ---------------------DFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGA 217 (286)
Q Consensus 159 ---------------------~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~ 217 (286)
++.+|.+. .+|+.. -.++.|++++...|.+. .+|+.++.+.+|..|++..|.+. .
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~-i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENH-IAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F 220 (565)
T ss_pred cccccccCchHHHHHHHHHHhhccccchh-hCCHHH-HHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c
Confidence 44444443 333333 12556666666666654 66767777777777777777776 4
Q ss_pred cchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 218 IPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 218 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
+| +|.+++.|.+++++.|.+.-...+..++++++.+||+.+|+++ +.|+.++.+++++++++.
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLS 283 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhccc
Confidence 45 5666666777777777666333334446777777777777775 556777777777666543
No 12
>PLN03150 hypothetical protein; Provisional
Probab=99.66 E-value=1.9e-15 Score=140.23 Aligned_cols=154 Identities=27% Similarity=0.476 Sum_probs=129.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCccccCCCCCCCCCC-----CceeeEecCCC----CcEEEEEeCCCCCcccCchhcc
Q 023193 32 NTSTTTADQDGLLALKAHITHDPTNFLAKNWNTRTLVC-----NWTGVTCDVHS----HRVTILNISRLNLTGTIPSQLG 102 (286)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~g~~c~~~~----~~l~~l~l~~~~i~~~~~~~~~ 102 (286)
...+...|..++..+|..+. ++.. .+ |... +| .|.|+.|.... ..++.|+|+++.+.|.+|+.++
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~-~~~~--~~-W~g~--~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~ 439 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLG-LPLR--FG-WNGD--PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS 439 (623)
T ss_pred ccccCchHHHHHHHHHHhcC-Cccc--CC-CCCC--CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHh
Confidence 34566788999999999884 3321 23 8643 44 79999996321 3589999999999999999999
Q ss_pred CCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccE
Q 023193 103 NLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEI 182 (286)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 182 (286)
.+++|+.|++++|.+.|.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.++|.+|..+.....++..
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~ 519 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887444566778
Q ss_pred eeeeccccC
Q 023193 183 LSLSQNMFH 191 (286)
Q Consensus 183 L~l~~n~l~ 191 (286)
+++.+|...
T Consensus 520 l~~~~N~~l 528 (623)
T PLN03150 520 FNFTDNAGL 528 (623)
T ss_pred EEecCCccc
Confidence 888888654
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=1.6e-16 Score=136.53 Aligned_cols=202 Identities=21% Similarity=0.183 Sum_probs=144.7
Q ss_pred CcEEEEEeCCCCCcc------cCchhccCCCCCCEEEcccCCCCccCchhhhcCCC---CcEEEccCCCCCc----cCCc
Q 023193 81 HRVTILNISRLNLTG------TIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYT---LKYVNFRENQLSG----AFPS 147 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~p~ 147 (286)
..++.++++++.+.+ .++..+..+++|++|++++|.+.+..+..+..+.+ |++|++++|.+++ .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 447778888777652 34556778889999999999987666666666655 9999999998873 2333
Q ss_pred cccCC-CCCCEEEeecCCCCCCCchh---hhcCCCCccEeeeeccccCCC----CCccCcCCCCcceEecccCCCccc--
Q 023193 148 LIFNK-SSLQLLDFAHNTLSDEIPAN---ICSNLPFLEILSLSQNMFHGG----IPSTLSNCTYLQKLSLPYNDFSGA-- 217 (286)
Q Consensus 148 ~~~~l-~~L~~L~L~~n~l~~~l~~~---~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~l~~n~l~~~-- 217 (286)
.+..+ ++|++|++++|.+++..... .+..+.+|++|++++|.+++. ++..+...++|++|++++|.+++.
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 45566 88999999999987432222 235667899999999998742 333455567899999999988753
Q ss_pred --cchhhcCCcccceeecccccCCCCchhhhcC-----CCCCCEEecccCcccc----cchHHHhhccCCCceeee
Q 023193 218 --IPKEIGNLNKLKRLYLGRNRLQGEIPQEFGN-----LAELEQMSLSENKLQG----MIINFLQFYSSSACFCIR 282 (286)
Q Consensus 218 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~l~~l~~l~~l~l~ 282 (286)
++..+..+++|++|++++|.+++.....+.. .+.|+.|++++|.+++ .+...+..+++++.+++.
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence 3344567788999999999988643333322 3789999999999973 334566666677776654
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=1.2e-18 Score=146.00 Aligned_cols=193 Identities=32% Similarity=0.462 Sum_probs=140.2
Q ss_pred cEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEee
Q 023193 82 RVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFA 161 (286)
Q Consensus 82 ~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 161 (286)
.+..+++++|.+. .+.+.+.++..+..+++.+|.+. +.|.+++.+..++.++.++|++. .+|..+..+.+++.++.+
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 3567889999988 45566889999999999999998 88999999999999999999998 889999999999999999
Q ss_pred cCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCcc----------------------ccc
Q 023193 162 HNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSG----------------------AIP 219 (286)
Q Consensus 162 ~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~----------------------~~~ 219 (286)
.|.+. .+|+++ +.+..+..++..+|+++ ..|..++++.++..+++.+|.+.. .+|
T Consensus 123 ~n~~~-el~~~i-~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP 199 (565)
T KOG0472|consen 123 SNELK-ELPDSI-GRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLP 199 (565)
T ss_pred cccee-ecCchH-HHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCC
Confidence 99997 778777 56777777777778776 566666666666666666666553 344
Q ss_pred hhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 220 KEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 220 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
..++.+.+|+-|||..|++. .+| .|..|+.|.++.++.|.++....+....+.++..+++|
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc
Confidence 44555555555555555555 344 45555555555555555543333444466666666554
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-16 Score=146.31 Aligned_cols=194 Identities=26% Similarity=0.370 Sum_probs=110.1
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
..++.++++++.+. .+|.+++.+.+|+.++..+|.+. .+|..+....+|+.|....|.++ .+|+....+..|++|+|
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 45666777777776 45677777888888887777774 44544444444444444444444 44444444555555555
Q ss_pred ecCCCC-------------------------------------------------CCCchhhhcCCCCccEeeeeccccC
Q 023193 161 AHNTLS-------------------------------------------------DEIPANICSNLPFLEILSLSQNMFH 191 (286)
Q Consensus 161 ~~n~l~-------------------------------------------------~~l~~~~~~~l~~L~~L~l~~n~l~ 191 (286)
..|.+. +...+-+ .++.+|+.|+|++|++.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l-~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL-VNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh-ccccceeeeeecccccc
Confidence 555543 2222222 34556666666666665
Q ss_pred CCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHh
Q 023193 192 GGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQ 271 (286)
Q Consensus 192 ~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 271 (286)
......+.++..|++|+++||.++ .+|..+..+..|++|...+|.+. ..| .+..+++|+.+|++.|+++......-.
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 333334555666666666666665 44555555555555555555555 334 566667777777777777655544433
Q ss_pred hccCCCceee
Q 023193 272 FYSSSACFCI 281 (286)
Q Consensus 272 ~l~~l~~l~l 281 (286)
.-++|+.+++
T Consensus 474 p~p~LkyLdl 483 (1081)
T KOG0618|consen 474 PSPNLKYLDL 483 (1081)
T ss_pred CCcccceeec
Confidence 3355555554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=7e-15 Score=137.57 Aligned_cols=163 Identities=26% Similarity=0.426 Sum_probs=77.4
Q ss_pred cEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEee
Q 023193 82 RVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFA 161 (286)
Q Consensus 82 ~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 161 (286)
.++.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 3555555555555 3343332 35556666655554 3343332 24555555555554 3343332 245555555
Q ss_pred cCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCc-------------------CCCCcceEecccCCCccccchhh
Q 023193 162 HNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLS-------------------NCTYLQKLSLPYNDFSGAIPKEI 222 (286)
Q Consensus 162 ~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-------------------~~~~L~~L~l~~n~l~~~~~~~~ 222 (286)
+|+++ .+|..+ ..+|++|++++|++++ +|..+. -.++|+.|++++|.+++ +|..+
T Consensus 271 ~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l 344 (754)
T PRK15370 271 HNKIS-CLPENL---PEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASL 344 (754)
T ss_pred CCccC-cccccc---CCCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhh
Confidence 55554 444433 1345555555555542 222111 01234445555554442 33322
Q ss_pred cCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccc
Q 023193 223 GNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQG 264 (286)
Q Consensus 223 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 264 (286)
. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++
T Consensus 345 ~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 345 P--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN 381 (754)
T ss_pred c--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC
Confidence 1 35666666666655 3443332 456666666666653
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=1.1e-14 Score=135.69 Aligned_cols=178 Identities=26% Similarity=0.290 Sum_probs=108.3
Q ss_pred CcEEEEEeCCCCCcccCchhccC-----------------CCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCc
Q 023193 81 HRVTILNISRLNLTGTIPSQLGN-----------------LSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSG 143 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~-----------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 143 (286)
..++.|++++|.++. +|..+.+ ..+|+.|++++|.+. .+|. ..++|+.|++++|++++
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS 316 (788)
T ss_pred CCCcEEEecCCccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc
Confidence 667777777777663 3322111 123445555666555 3333 13456666666666653
Q ss_pred cCCcc---cc----------C---C-CCCCEEEeecCCCCCCCchhh----------------hcCCCCccEeeeecccc
Q 023193 144 AFPSL---IF----------N---K-SSLQLLDFAHNTLSDEIPANI----------------CSNLPFLEILSLSQNMF 190 (286)
Q Consensus 144 ~~p~~---~~----------~---l-~~L~~L~L~~n~l~~~l~~~~----------------~~~l~~L~~L~l~~n~l 190 (286)
. |.. +. . + .+|++|++++|+++ .+|... .....+|+.|++++|.+
T Consensus 317 L-p~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~L 394 (788)
T PRK15387 317 L-PALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL 394 (788)
T ss_pred C-CCCcccccccccccCccccccccccccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCcc
Confidence 2 211 11 0 1 25677777777776 444311 00113456666666666
Q ss_pred CCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHH
Q 023193 191 HGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFL 270 (286)
Q Consensus 191 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 270 (286)
+ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|++++.++..+
T Consensus 395 t-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 395 T-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred c-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 5 33432 2457777777777774 4543 246778889999988 678889999999999999999999999888
Q ss_pred hhcc
Q 023193 271 QFYS 274 (286)
Q Consensus 271 ~~l~ 274 (286)
..+.
T Consensus 466 ~~l~ 469 (788)
T PRK15387 466 REIT 469 (788)
T ss_pred HHHh
Confidence 5543
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=3.4e-14 Score=140.56 Aligned_cols=190 Identities=21% Similarity=0.216 Sum_probs=91.4
Q ss_pred EEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeec
Q 023193 83 VTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAH 162 (286)
Q Consensus 83 l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (286)
++.|++.++.+. .++..+..+++|+.++++++...+.+|. +..+++|++|++++|.....+|..+..+++|+.|++++
T Consensus 613 L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 613 LVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred CcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 444444444443 3344444555555555554433333332 44455555555555544444555555555555555555
Q ss_pred CCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhh--------------------
Q 023193 163 NTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEI-------------------- 222 (286)
Q Consensus 163 n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~-------------------- 222 (286)
|...+.+|..+ ++++|++|++++|...+.+|.. ..+|+.|++++|.+. .+|..+
T Consensus 691 c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 691 CENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred CCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccc
Confidence 43223444433 3555555555555433233321 124445555555443 222211
Q ss_pred ----------cCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceee
Q 023193 223 ----------GNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCI 281 (286)
Q Consensus 223 ----------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l 281 (286)
...++|+.|++++|...+.+|..++++++|+.|++++|..-+.+|..+ .+++|+.+++
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence 112355666666665555666666666667777776665434444433 3444444443
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=3.1e-14 Score=140.88 Aligned_cols=195 Identities=21% Similarity=0.223 Sum_probs=113.5
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.++++++.....+|. ++.+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 5677778877654445553 6677777777777776555677777777777777777764433455433 3444444444
Q ss_pred ---------------------ecCCCCCCCchhh-----------------------------hcCCCCccEeeeecccc
Q 023193 161 ---------------------AHNTLSDEIPANI-----------------------------CSNLPFLEILSLSQNMF 190 (286)
Q Consensus 161 ---------------------~~n~l~~~l~~~~-----------------------------~~~l~~L~~L~l~~n~l 190 (286)
++|.+. .+|..+ +...++|++|++++|..
T Consensus 712 sgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 712 SGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred CCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 444433 333211 01124677777777766
Q ss_pred CCCCCccCcCCCCcceEecccCCCccccchhhcCCcccce---------------------eecccccCCCCchhhhcCC
Q 023193 191 HGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKR---------------------LYLGRNRLQGEIPQEFGNL 249 (286)
Q Consensus 191 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~---------------------L~L~~n~l~~~~~~~~~~l 249 (286)
.+.+|..++++++|+.|++++|..-+.+|... .+++|+. |+|++|.++ .+|..+..+
T Consensus 791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l 868 (1153)
T PLN03210 791 LVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKF 868 (1153)
T ss_pred ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcC
Confidence 66778888888888888888765433455433 3444444 445555554 455556666
Q ss_pred CCCCEEecccCcccccchHHHhhccCCCcee
Q 023193 250 AELEQMSLSENKLQGMIINFLQFYSSSACFC 280 (286)
Q Consensus 250 ~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~ 280 (286)
++|+.|++++|+--..+|..+..+++++.++
T Consensus 869 ~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 869 SNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred CCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 6666666666442223444445555554444
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=2.9e-16 Score=143.74 Aligned_cols=194 Identities=28% Similarity=0.331 Sum_probs=148.4
Q ss_pred cEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhh--------------------------cCCCCcEEE
Q 023193 82 RVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIF--------------------------GTYTLKYVN 135 (286)
Q Consensus 82 ~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------------------~l~~L~~L~ 135 (286)
.++.+....|.+. .+|+...+++.|+.|++..|++. .+|+.+. .++.|+.|+
T Consensus 288 ~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 288 SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY 365 (1081)
T ss_pred hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence 3444555555555 45555666677777777776665 3443221 133477888
Q ss_pred ccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCc
Q 023193 136 FRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFS 215 (286)
Q Consensus 136 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 215 (286)
+.+|.+++..-+.+.+..+|++|+|++|.++ .+|...+.++..|++|++++|+++ .+|..+.++..|++|...+|++.
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 8899998877778889999999999999997 899988899999999999999998 88999999999999999999998
Q ss_pred cccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceee
Q 023193 216 GAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCI 281 (286)
Q Consensus 216 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l 281 (286)
..| .+..++.|+.+|++.|+++...-+.-...++|++||++||.-....-..|..++++...++
T Consensus 444 -~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 444 -SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred -ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheec
Confidence 667 8899999999999999998643333333489999999999854444455555555554443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=1.6e-14 Score=135.22 Aligned_cols=182 Identities=24% Similarity=0.403 Sum_probs=119.8
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|++|++++|+++ .+|..+. ++|+.|++
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSV 290 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEEC
Confidence 35777888888777 3454433 35777777777766 5555443 35677777777666 3454442 35666666
Q ss_pred ecCCCCCCCchhhh------------------cCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhh
Q 023193 161 AHNTLSDEIPANIC------------------SNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEI 222 (286)
Q Consensus 161 ~~n~l~~~l~~~~~------------------~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~ 222 (286)
++|+++ .+|..+. ...++|++|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+
T Consensus 291 s~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l 365 (754)
T PRK15370 291 YDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL 365 (754)
T ss_pred CCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh
Confidence 666665 3433211 11356788888888877 3565443 68999999999998 466655
Q ss_pred cCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHH----hhccCCCceeee
Q 023193 223 GNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFL----QFYSSSACFCIR 282 (286)
Q Consensus 223 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~l~~l~l~ 282 (286)
. ++|+.|++++|.+++ +|..+. ..|+.|++++|++++ +|..+ +.++.+..+.+.
T Consensus 366 p--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 366 P--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred c--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEee
Confidence 3 689999999999994 555554 368999999999984 44444 334555655543
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.54 E-value=1.8e-16 Score=138.28 Aligned_cols=176 Identities=30% Similarity=0.477 Sum_probs=158.5
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
...+..|++.|.+. .+|..+..+..|+.+.+..|-+. .+|..+..+..|.+++++.|+++ .+|..++.++ |+.|.+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 34566789999887 78988999999999999999987 88999999999999999999999 8899998887 999999
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
++|+++ .+|..+ +...+|..++.+.|.+. .+|..++++.+|+.|.+..|++. .+|.++..+ .|..||++.|+++
T Consensus 151 sNNkl~-~lp~~i-g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 151 SNNKLT-SLPEEI-GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred ecCccc-cCCccc-ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-
Confidence 999997 899999 68899999999999998 88999999999999999999998 567777765 5899999999999
Q ss_pred CchhhhcCCCCCCEEecccCcccccc
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQGMI 266 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~~~ 266 (286)
.+|-.|.++.+|++|-|.+|+++...
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCCCCh
Confidence 89999999999999999999998544
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=8.5e-14 Score=129.92 Aligned_cols=182 Identities=29% Similarity=0.335 Sum_probs=111.2
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhc-----------------CCCCcEEEccCCCCCc
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFG-----------------TYTLKYVNFRENQLSG 143 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------l~~L~~L~l~~n~l~~ 143 (286)
.+++.|++.+|+++. +|. ..++|++|++++|.++ .+|..... ..+|+.|++++|+++
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt- 295 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT- 295 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-
Confidence 468899999999984 554 2578999999999887 34432111 123455566666665
Q ss_pred cCCccccCCCCCCEEEeecCCCCCCCchhh------------hc----CCCCccEeeeeccccCCCCCccCcCC------
Q 023193 144 AFPSLIFNKSSLQLLDFAHNTLSDEIPANI------------CS----NLPFLEILSLSQNMFHGGIPSTLSNC------ 201 (286)
Q Consensus 144 ~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~------------~~----~l~~L~~L~l~~n~l~~~~p~~~~~~------ 201 (286)
.+|. ..++|+.|++++|+++ .+|... +. ...+|++|++++|++++ +|....++
T Consensus 296 ~LP~---~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls 370 (788)
T PRK15387 296 SLPV---LPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAY 370 (788)
T ss_pred cccc---cccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCCcccceehhh
Confidence 3333 2367999999999987 444311 00 11368888888888873 44322111
Q ss_pred -----------CCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHH
Q 023193 202 -----------TYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFL 270 (286)
Q Consensus 202 -----------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 270 (286)
.+|+.|++++|++++ +|.. .++|+.|++++|.+++ +|... .+|+.|++++|+++ .+|+.+
T Consensus 371 ~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl 441 (788)
T PRK15387 371 NNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESL 441 (788)
T ss_pred ccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHH
Confidence 234555555555552 3322 2356666666666663 44322 34667777777776 567788
Q ss_pred hhccCCCceeee
Q 023193 271 QFYSSSACFCIR 282 (286)
Q Consensus 271 ~~l~~l~~l~l~ 282 (286)
..+.++..+++.
T Consensus 442 ~~L~~L~~LdLs 453 (788)
T PRK15387 442 IHLSSETTVNLE 453 (788)
T ss_pred hhccCCCeEECC
Confidence 888888777654
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=4.1e-16 Score=130.62 Aligned_cols=183 Identities=25% Similarity=0.292 Sum_probs=146.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEccc-CCCCccCc------------------------hhhhcCCCCcEEE
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSF-NQLSGSIP------------------------SAIFGTYTLKYVN 135 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~------------------------~~~~~l~~L~~L~ 135 (286)
++++.|||++|+|+.+-|.+|.++..+..|-+.+ |+++..-. +.|..++++..|.
T Consensus 91 ~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLs 170 (498)
T KOG4237|consen 91 HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLS 170 (498)
T ss_pred hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhc
Confidence 7899999999999999999999999888777666 77763222 3344456666667
Q ss_pred ccCCCCCccCCccccCCCCCCEEEeecCCCC-------------------------------------------------
Q 023193 136 FRENQLSGAFPSLIFNKSSLQLLDFAHNTLS------------------------------------------------- 166 (286)
Q Consensus 136 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~------------------------------------------------- 166 (286)
+.+|.+...--..+..+..++++.+..|.+-
T Consensus 171 lyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es 250 (498)
T KOG4237|consen 171 LYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES 250 (498)
T ss_pred ccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence 7777666333335666666677666655511
Q ss_pred ------------CCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecc
Q 023193 167 ------------DEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLG 234 (286)
Q Consensus 167 ------------~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 234 (286)
+..|..-|..+++|++|++++|++++.-+.+|.....+++|.|..|++...-...|.+++.|++|+|.
T Consensus 251 l~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 251 LPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY 330 (498)
T ss_pred HHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence 13455556889999999999999998888999999999999999999987667788999999999999
Q ss_pred cccCCCCchhhhcCCCCCCEEecccCccc
Q 023193 235 RNRLQGEIPQEFGNLAELEQMSLSENKLQ 263 (286)
Q Consensus 235 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 263 (286)
+|+|+...|.+|..+..|.+|++-.|++.
T Consensus 331 ~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 331 DNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CCeeEEEecccccccceeeeeehccCccc
Confidence 99999989999999999999999999874
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.40 E-value=3.1e-13 Score=119.61 Aligned_cols=181 Identities=35% Similarity=0.512 Sum_probs=146.8
Q ss_pred CcEEEEEeCCCCCcccCchhccCCC-CCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEE
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLS-SLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLD 159 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 159 (286)
..++.+++.++.++ .+++....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|...+..+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 45788899999888 5666677774 8999999999987 66667888999999999999998 5565555788999999
Q ss_pred eecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCC
Q 023193 160 FAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQ 239 (286)
Q Consensus 160 L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 239 (286)
+++|+++ .+|... .....|+++.+++|.+. ..+..+.++.++..+.+.+|++. ..+..++.++++++|++++|.++
T Consensus 193 ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 193 LSGNKIS-DLPPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred ccCCccc-cCchhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence 9999998 788765 45667999999999654 56677888888888888888887 34677788888999999999998
Q ss_pred CCchhhhcCCCCCCEEecccCcccccchHHH
Q 023193 240 GEIPQEFGNLAELEQMSLSENKLQGMIINFL 270 (286)
Q Consensus 240 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 270 (286)
...+ ++...+++.|++++|.++...+...
T Consensus 269 ~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 269 SISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cccc--ccccCccCEEeccCccccccchhhh
Confidence 4443 8888999999999999887665443
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.32 E-value=4.1e-12 Score=118.12 Aligned_cols=108 Identities=33% Similarity=0.573 Sum_probs=81.7
Q ss_pred CCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecc
Q 023193 155 LQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLG 234 (286)
Q Consensus 155 L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 234 (286)
++.|+|++|.++|.+|..+ ..+++|++|++++|.+.|.+|..++.+++|+.|++++|+++|.+|..++.+++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 6677777777777777766 677778888888888877777777777788888888888877777777777888888888
Q ss_pred cccCCCCchhhhcCC-CCCCEEecccCccc
Q 023193 235 RNRLQGEIPQEFGNL-AELEQMSLSENKLQ 263 (286)
Q Consensus 235 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~ 263 (286)
+|.++|.+|..++.. .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 888877777776653 45667777777643
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=1.5e-13 Score=120.29 Aligned_cols=187 Identities=25% Similarity=0.384 Sum_probs=156.8
Q ss_pred EEeCCCCCcccCchhc-cCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCC
Q 023193 86 LNISRLNLTGTIPSQL-GNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNT 164 (286)
Q Consensus 86 l~l~~~~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 164 (286)
+.|++..+.....+.+ -.+..-...+++.|.+. .+|..+..+..|+.+.++.|.+. .+|..++++..|.+++++.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence 4555555543222222 23455567889999998 88999999999999999999998 889999999999999999999
Q ss_pred CCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchh
Q 023193 165 LSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQ 244 (286)
Q Consensus 165 l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 244 (286)
++ .+|..++ .--|+.|-+++|+++ .+|..++....|..|+.+.|++. .+|..++.+.+|+.|.+..|++. .+|+
T Consensus 133 lS-~lp~~lC--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 133 LS-HLPDGLC--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred hh-cCChhhh--cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 98 8998884 455899999999998 88999998899999999999998 67888999999999999999998 5666
Q ss_pred hhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 245 EFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 245 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
.+..++ |..||++.|+++ .+|-.|.++.+|+++.|.
T Consensus 207 El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 207 ELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred HHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeec
Confidence 677665 889999999996 788999999999988764
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.28 E-value=4.4e-12 Score=98.14 Aligned_cols=108 Identities=29% Similarity=0.280 Sum_probs=27.6
Q ss_pred CCCCCCEEEcccCCCCccCchhhh-cCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCcc
Q 023193 103 NLSSLQSLDLSFNQLSGSIPSAIF-GTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLE 181 (286)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 181 (286)
+...+++|++++|.+... +.+. .+.+|+.|++++|.++.. +.+..+++|++|++++|.++ .+.+.+...+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 334566666666666522 2233 355666666666666533 23445666666666666665 44433323456666
Q ss_pred EeeeeccccCCC-CCccCcCCCCcceEecccCCCc
Q 023193 182 ILSLSQNMFHGG-IPSTLSNCTYLQKLSLPYNDFS 215 (286)
Q Consensus 182 ~L~l~~n~l~~~-~p~~~~~~~~L~~L~l~~n~l~ 215 (286)
+|++++|+|... .-..+..+++|+.|++.+|+++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666666431 1123344455555555555544
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=3.8e-12 Score=112.68 Aligned_cols=189 Identities=30% Similarity=0.446 Sum_probs=152.4
Q ss_pred EEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCC-CCcEEEccCCCCCccCCccccCCCCCCEEEeecC
Q 023193 85 ILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTY-TLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHN 163 (286)
Q Consensus 85 ~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 163 (286)
.++...+.+.. ....+..++.++.+++.+|.+. .++....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 46666666532 2333556688999999999998 6666666664 9999999999998 66677889999999999999
Q ss_pred CCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCch
Q 023193 164 TLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIP 243 (286)
Q Consensus 164 ~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 243 (286)
+++ .+|... ...+.|+.+++++|+++ .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++. .++
T Consensus 174 ~l~-~l~~~~-~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLL-SNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhh-hhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 998 777755 47899999999999998 66766556667999999999654 45677888899999999999987 447
Q ss_pred hhhcCCCCCCEEecccCcccccchHHHhhccCCCceeeee
Q 023193 244 QEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 244 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
..++.++.++.|++++|.++.... ++.+.++..+++..
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG 286 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccC
Confidence 788889999999999999987766 78888888887654
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=1.4e-11 Score=95.33 Aligned_cols=128 Identities=27% Similarity=0.315 Sum_probs=44.4
Q ss_pred hhcCCCCcEEEccCCCCCccCCcccc-CCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccC-cCCC
Q 023193 125 IFGTYTLKYVNFRENQLSGAFPSLIF-NKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTL-SNCT 202 (286)
Q Consensus 125 ~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~~~ 202 (286)
+.+..++++|++.+|.++.. +.++ .+.+|+.|++++|.++ .++. + ..++.|++|++++|+|+. +.+.+ ..++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~-l-~~L~~L~~L~L~~N~I~~-i~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEG-L-PGLPRLKTLDLSNNRISS-ISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-T
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccC-c-cChhhhhhcccCCCCCCc-cccchHHhCC
Confidence 33445678888888887633 2344 4677888888888886 5543 3 567778888888888773 33333 3567
Q ss_pred CcceEecccCCCcccc-chhhcCCcccceeecccccCCCCc---hhhhcCCCCCCEEecc
Q 023193 203 YLQKLSLPYNDFSGAI-PKEIGNLNKLKRLYLGRNRLQGEI---PQEFGNLAELEQMSLS 258 (286)
Q Consensus 203 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~ 258 (286)
+|++|++++|++...- -..+..+++|+.|+|.+|+++... ...+..+|+|+.||-.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 7888888888776421 134566777778888888777432 2356667777777643
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=9.2e-12 Score=103.29 Aligned_cols=182 Identities=19% Similarity=0.232 Sum_probs=137.9
Q ss_pred CcEEEEEeCCCCCcccCch----hccCCCCCCEEEcccCCCCccCchh-------------hhcCCCCcEEEccCCCCCc
Q 023193 81 HRVTILNISRLNLTGTIPS----QLGNLSSLQSLDLSFNQLSGSIPSA-------------IFGTYTLKYVNFRENQLSG 143 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~ 143 (286)
++++.+||++|.+...-++ .+.++..|++|.+.+|.+....... ...-++|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 5899999999998754333 3456789999999999987332222 2234679999999999874
Q ss_pred c----CCccccCCCCCCEEEeecCCCCCC---CchhhhcCCCCccEeeeeccccCC----CCCccCcCCCCcceEecccC
Q 023193 144 A----FPSLIFNKSSLQLLDFAHNTLSDE---IPANICSNLPFLEILSLSQNMFHG----GIPSTLSNCTYLQKLSLPYN 212 (286)
Q Consensus 144 ~----~p~~~~~l~~L~~L~L~~n~l~~~---l~~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~~~~L~~L~l~~n 212 (286)
- +...+..++.|+++.++.|.+... +-..-+..+++|+.|++.+|.++. .+...+..++.|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 3 234466788999999999998621 112235789999999999998863 35566778899999999999
Q ss_pred CCccccchhh-----cCCcccceeecccccCCCC----chhhhcCCCCCCEEecccCcc
Q 023193 213 DFSGAIPKEI-----GNLNKLKRLYLGRNRLQGE----IPQEFGNLAELEQMSLSENKL 262 (286)
Q Consensus 213 ~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l 262 (286)
.+.......+ ...++|+++.+.+|.++.. +...+...+.|..|+|++|.+
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9986544333 3468999999999999853 334556678999999999999
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.4e-11 Score=103.55 Aligned_cols=183 Identities=22% Similarity=0.197 Sum_probs=120.9
Q ss_pred CcEEEEEeCCCCCcccCc-hhccCCCCCCEEEcccCCCCcc--CchhhhcCCCCcEEEccCCCCCccCCccc-cCCCCCC
Q 023193 81 HRVTILNISRLNLTGTIP-SQLGNLSSLQSLDLSFNQLSGS--IPSAIFGTYTLKYVNFRENQLSGAFPSLI-FNKSSLQ 156 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~ 156 (286)
..++.+.+.+..+....- .....+++++.|+++.|-+... +..-...+++|+.|+++.|.+.-...... ..++.|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 456667777776652111 3566788888888888877633 23344568888888888888763322222 2567788
Q ss_pred EEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCcccc-chhhcCCcccceeeccc
Q 023193 157 LLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAI-PKEIGNLNKLKRLYLGR 235 (286)
Q Consensus 157 ~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~ 235 (286)
.|.++.|+++..-...+...+++++.|++..|............++.|++|+|++|++.... -...+.++.|+.|.++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 88888888875444445567888888888888532222233344567888888888876432 14457778888888888
Q ss_pred ccCCCC-chhh-----hcCCCCCCEEecccCccc
Q 023193 236 NRLQGE-IPQE-----FGNLAELEQMSLSENKLQ 263 (286)
Q Consensus 236 n~l~~~-~~~~-----~~~l~~L~~L~l~~n~l~ 263 (286)
+.+... .|+. ...+++|+.|+++.|++.
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 877752 2222 345678888888888874
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=3.3e-11 Score=100.01 Aligned_cols=111 Identities=27% Similarity=0.369 Sum_probs=58.9
Q ss_pred CCCCEEEeecCCCCCCCc----hhhhcCCCCccEeeeeccccCC----CCCccCcCCCCcceEecccCCCccc----cch
Q 023193 153 SSLQLLDFAHNTLSDEIP----ANICSNLPFLEILSLSQNMFHG----GIPSTLSNCTYLQKLSLPYNDFSGA----IPK 220 (286)
Q Consensus 153 ~~L~~L~L~~n~l~~~l~----~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~~~~L~~L~l~~n~l~~~----~~~ 220 (286)
+.|+++....|.+. .-+ ...|+..+.|+.+.+..|.|.. .+...+..++.|+.||+.+|-++.. +..
T Consensus 157 ~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 44555555555553 211 1223445556666666665531 1223345566677777777666532 223
Q ss_pred hhcCCcccceeecccccCCCCchhhh-----cCCCCCCEEecccCcccc
Q 023193 221 EIGNLNKLKRLYLGRNRLQGEIPQEF-----GNLAELEQMSLSENKLQG 264 (286)
Q Consensus 221 ~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~ 264 (286)
.+..++.|+++++++|.+...-..++ ...|.|+.|++.+|.++.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 44556666777777776664433222 235667777777776653
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=2.2e-11 Score=99.40 Aligned_cols=132 Identities=29% Similarity=0.300 Sum_probs=99.7
Q ss_pred CCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEe
Q 023193 104 LSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEIL 183 (286)
Q Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 183 (286)
.+.|+++|+++|.++ .+.++..-.|.++.|++++|.+... ..+..+++|+.||+++|.++ .+..+- ..+-+.++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh-~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWH-LKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhH-hhhcCEeee
Confidence 456888899998887 5666677788889999999988733 23677888999999998886 554443 567888888
Q ss_pred eeeccccCCCCCccCcCCCCcceEecccCCCcccc-chhhcCCcccceeecccccCCCCc
Q 023193 184 SLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAI-PKEIGNLNKLKRLYLGRNRLQGEI 242 (286)
Q Consensus 184 ~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~ 242 (286)
.++.|.+. .-+.++.+.+|..||+++|++...- -..+++++-|+.+.|.+|.+.+.+
T Consensus 358 ~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 99888884 3355777888888999988886421 245678888888888888888543
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=1.9e-10 Score=73.51 Aligned_cols=60 Identities=35% Similarity=0.521 Sum_probs=39.4
Q ss_pred CcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcc
Q 023193 203 YLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKL 262 (286)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 262 (286)
+|++|++++|+++...+..|..+++|++|++++|.++...+..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 466666666666655555666666666666666666655566666667777777766654
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.1e-11 Score=103.96 Aligned_cols=180 Identities=21% Similarity=0.193 Sum_probs=129.6
Q ss_pred cCCCCCCEEEcccCCCCccCc-hhhhcCCCCcEEEccCCCCCccCC--ccccCCCCCCEEEeecCCCCCCCchhhhcCCC
Q 023193 102 GNLSSLQSLDLSFNQLSGSIP-SAIFGTYTLKYVNFRENQLSGAFP--SLIFNKSSLQLLDFAHNTLSDEIPANICSNLP 178 (286)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 178 (286)
.++.+|+++.+.++.+..... .....+++++.||++.|-+....+ .....+++|+.|+++.|.+.-......-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467889999999988762221 366779999999999998764433 44568999999999999986333333334678
Q ss_pred CccEeeeeccccCCC-CCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCc-hhhhcCCCCCCEEe
Q 023193 179 FLEILSLSQNMFHGG-IPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEI-PQEFGNLAELEQMS 256 (286)
Q Consensus 179 ~L~~L~l~~n~l~~~-~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 256 (286)
+++.|.++.|.++.. +-.....+++|+.|++.+|..-..-.....-++.|++|||++|++.... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 999999999998742 2233456789999999999533333344455678999999999988533 24677899999999
Q ss_pred cccCcccccc-hHH-----HhhccCCCceee
Q 023193 257 LSENKLQGMI-INF-----LQFYSSSACFCI 281 (286)
Q Consensus 257 l~~n~l~~~~-~~~-----l~~l~~l~~l~l 281 (286)
++.+.++..- |+. ...+++++.|.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i 308 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNI 308 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeec
Confidence 9999986532 222 345566665554
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=7.3e-11 Score=96.44 Aligned_cols=133 Identities=21% Similarity=0.244 Sum_probs=108.9
Q ss_pred CCCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEE
Q 023193 79 HSHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLL 158 (286)
Q Consensus 79 ~~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 158 (286)
.|..++.+|+++|.|+ .+.++..-++.++.|++++|.+... ..+..+++|+.||+++|.++ .....-.++.++++|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 4577889999999998 6777778889999999999999733 34888999999999999987 334444578899999
Q ss_pred EeecCCCCCCCchhhhcCCCCccEeeeeccccCCC-CCccCcCCCCcceEecccCCCcccc
Q 023193 159 DFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGG-IPSTLSNCTYLQKLSLPYNDFSGAI 218 (286)
Q Consensus 159 ~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~~~L~~L~l~~n~l~~~~ 218 (286)
.+++|.+. .+. .+ ..+-+|..|++.+|+|... -...+++++.|+++.+.+|.+.+.+
T Consensus 358 ~La~N~iE-~LS-GL-~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIE-TLS-GL-RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ehhhhhHh-hhh-hh-HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 99999985 443 33 6788999999999999742 3356899999999999999998643
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=8.9e-10 Score=70.35 Aligned_cols=59 Identities=34% Similarity=0.436 Sum_probs=31.4
Q ss_pred CccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeeccccc
Q 023193 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNR 237 (286)
Q Consensus 179 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 237 (286)
+|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554433455555555555555555554444555555555555555554
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.73 E-value=1.3e-08 Score=82.33 Aligned_cols=200 Identities=17% Similarity=0.219 Sum_probs=121.3
Q ss_pred CcEEEEEeCCCCCccc----CchhccCCCCCCEEEcccCCCC---ccC-------chhhhcCCCCcEEEccCCCCCccCC
Q 023193 81 HRVTILNISRLNLTGT----IPSQLGNLSSLQSLDLSFNQLS---GSI-------PSAIFGTYTLKYVNFRENQLSGAFP 146 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~----~~~~~~~l~~L~~L~l~~n~l~---~~~-------~~~~~~l~~L~~L~l~~n~l~~~~p 146 (286)
..++.+++++|.|... +...+++-.+|+..++++-... ..+ .+.+.++|+|++.++|.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 5578889999888743 3344556677777777754322 112 2345577888888888888876555
Q ss_pred cc----ccCCCCCCEEEeecCCCCCCCchhh-----h--------cCCCCccEeeeeccccCCCCC----ccCcCCCCcc
Q 023193 147 SL----IFNKSSLQLLDFAHNTLSDEIPANI-----C--------SNLPFLEILSLSQNMFHGGIP----STLSNCTYLQ 205 (286)
Q Consensus 147 ~~----~~~l~~L~~L~L~~n~l~~~l~~~~-----~--------~~l~~L~~L~l~~n~l~~~~p----~~~~~~~~L~ 205 (286)
.. ++..+.|.+|.+++|.+ |.+...- | ..-+.|+.+..+.|++..... ..+..-.+|.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 44 45667888888888887 3443221 1 234678888888887752211 1223335677
Q ss_pred eEecccCCCcccc-----chhhcCCcccceeecccccCCCC----chhhhcCCCCCCEEecccCcccccch-HHHhhccC
Q 023193 206 KLSLPYNDFSGAI-----PKEIGNLNKLKRLYLGRNRLQGE----IPQEFGNLAELEQMSLSENKLQGMII-NFLQFYSS 275 (286)
Q Consensus 206 ~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~ 275 (286)
++.+..|.|.... -.-+..+.+|+.|||+.|.++.. +..++..++.|+.|.+.+|-++.... ..+..+..
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 7777777665221 11224557778888888877642 33455566777788888877765443 44444444
Q ss_pred CCceee
Q 023193 276 SACFCI 281 (286)
Q Consensus 276 l~~l~l 281 (286)
.....+
T Consensus 269 ~~~p~l 274 (388)
T COG5238 269 KFVPNL 274 (388)
T ss_pred hcCCCc
Confidence 443333
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=4.2e-09 Score=93.77 Aligned_cols=155 Identities=26% Similarity=0.346 Sum_probs=71.9
Q ss_pred ccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCc
Q 023193 101 LGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFL 180 (286)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 180 (286)
+..+.+++.+++.+|.+.+.. ..+..+++|++|++++|.|+...+ +..++.|+.|++.+|.++ .+.. + ..+..|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~~-~-~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DISG-L-ESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hccC-C-ccchhh
Confidence 444455555555555554221 114445555555555555543322 233444555555555554 2222 1 234555
Q ss_pred cEeeeeccccCCCCC-ccCcCCCCcceEecccCCCccccc--------------------hhhcCCcc--cceeeccccc
Q 023193 181 EILSLSQNMFHGGIP-STLSNCTYLQKLSLPYNDFSGAIP--------------------KEIGNLNK--LKRLYLGRNR 237 (286)
Q Consensus 181 ~~L~l~~n~l~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~--------------------~~~~~l~~--L~~L~L~~n~ 237 (286)
+.+++++|++...-+ . ...+.+++.+.+.+|.+..... ..+..+.. |+.+++.+|.
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNR 243 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCc
Confidence 555555555542222 1 2334445555555554431100 00011111 5666666666
Q ss_pred CCCCchhhhcCCCCCCEEecccCccc
Q 023193 238 LQGEIPQEFGNLAELEQMSLSENKLQ 263 (286)
Q Consensus 238 l~~~~~~~~~~l~~L~~L~l~~n~l~ 263 (286)
+. ..+..+..+.++..+++.+|++.
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cc-cccccccccccccccchhhcccc
Confidence 66 23244555666666777766654
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=1.7e-09 Score=96.23 Aligned_cols=131 Identities=27% Similarity=0.398 Sum_probs=102.0
Q ss_pred cCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCcc
Q 023193 102 GNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLE 181 (286)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 181 (286)
..+..++.++++.|.+.. .-..+..+.+++.+++.+|++... ...+..+++|++|++++|.++ .+.. + ..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~-l-~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG-L-STLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc-h-hhccchh
Confidence 456677778888888763 334477889999999999999844 333678999999999999997 4543 2 4577799
Q ss_pred EeeeeccccCCCCCccCcCCCCcceEecccCCCccccc-hhhcCCcccceeecccccCCC
Q 023193 182 ILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIP-KEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 182 ~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~ 240 (286)
.|++.+|.|+.. ..+..++.|+.+++++|.++..-+ . ...+.+++.+++.+|.+..
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 999999999732 345568899999999999986544 2 4677889999999998763
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=7.5e-10 Score=90.43 Aligned_cols=194 Identities=21% Similarity=0.158 Sum_probs=107.2
Q ss_pred cEEEEEeCCCCCcc-cCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCC-Cc-cCCccccCCCCCCEE
Q 023193 82 RVTILNISRLNLTG-TIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQL-SG-AFPSLIFNKSSLQLL 158 (286)
Q Consensus 82 ~l~~l~l~~~~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~-~~p~~~~~l~~L~~L 158 (286)
+++.+||++..|+. .+-..+..+.+|+.|.+.++.+...+...+....+|+.++++.++= +. ...-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 45566666666552 2333445566666666666666655666666666666666665531 11 111224456666666
Q ss_pred EeecCCCCCCCchhhhc-CCCCccEeeeeccccC--C-CCCccCcCCCCcceEecccCC-CccccchhhcCCcccceeec
Q 023193 159 DFAHNTLSDEIPANICS-NLPFLEILSLSQNMFH--G-GIPSTLSNCTYLQKLSLPYND-FSGAIPKEIGNLNKLKRLYL 233 (286)
Q Consensus 159 ~L~~n~l~~~l~~~~~~-~l~~L~~L~l~~n~l~--~-~~p~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 233 (286)
+++.+.++......+.. --.+|+.|++++..-. . .+.-....+++|.+|||++|. ++...-.++..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 66666654322211111 1245666666665321 1 111122456788888888764 34344456677788888888
Q ss_pred ccccCCCCchhh---hcCCCCCCEEecccCcccccchHHHhhccCCC
Q 023193 234 GRNRLQGEIPQE---FGNLAELEQMSLSENKLQGMIINFLQFYSSSA 277 (286)
Q Consensus 234 ~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~ 277 (286)
+.|.. .+|+. +...|.|.+||+.|+--.+...-....+++++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 87764 45554 34567788888877754443333344444433
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.63 E-value=8.6e-10 Score=99.77 Aligned_cols=126 Identities=28% Similarity=0.319 Sum_probs=73.6
Q ss_pred CcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecc
Q 023193 131 LKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLP 210 (286)
Q Consensus 131 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~ 210 (286)
|.+.+++.|.+. .....+.-++.++.|+|+.|+++ ... .+ ..+++|++||+++|.++ .+|..-..-..|..|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~L-r~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NL-RRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HH-Hhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 455555666655 44445555666777777777776 332 33 55677777777777776 334322222237777777
Q ss_pred cCCCccccchhhcCCcccceeecccccCCCCch-hhhcCCCCCCEEecccCccc
Q 023193 211 YNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIP-QEFGNLAELEQMSLSENKLQ 263 (286)
Q Consensus 211 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 263 (286)
+|.++.. .-+.++++|+.||+++|-|.+.-. .-+..+..|+.|+|.||++-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7766532 234566677777777776664211 22444566677777777653
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.59 E-value=2e-09 Score=78.25 Aligned_cols=117 Identities=23% Similarity=0.282 Sum_probs=69.6
Q ss_pred CCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCccccee
Q 023193 152 KSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRL 231 (286)
Q Consensus 152 l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 231 (286)
...|...++++|.+. ..|..+-..++..+.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 344555566666665 555555455556677777777776 55666777777777777777776 445555557777777
Q ss_pred ecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhh
Q 023193 232 YLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQF 272 (286)
Q Consensus 232 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 272 (286)
+..+|.+. .+|-.+..-++.-..++.++++.+..+..++.
T Consensus 129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa 168 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA 168 (177)
T ss_pred cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence 77777666 33333322222233445556666666554443
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.8e-09 Score=88.29 Aligned_cols=174 Identities=20% Similarity=0.187 Sum_probs=125.3
Q ss_pred CCCEEEcccCCCCc-cCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecC-CCCCCCchhhhcCCCCccEe
Q 023193 106 SLQSLDLSFNQLSG-SIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHN-TLSDEIPANICSNLPFLEIL 183 (286)
Q Consensus 106 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~l~~~~~~~l~~L~~L 183 (286)
.++.+|++...++. +.-.-+..+.+|+.|.+.++++.+.+...+.+-.+|+.++++++ .++..-...++.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 48899999888762 23344567889999999999999888888889999999999986 45544445567889999999
Q ss_pred eeeccccCCCCCccC-cC-CCCcceEecccCCC---ccccchhhcCCcccceeeccccc-CCCCchhhhcCCCCCCEEec
Q 023193 184 SLSQNMFHGGIPSTL-SN-CTYLQKLSLPYNDF---SGAIPKEIGNLNKLKRLYLGRNR-LQGEIPQEFGNLAELEQMSL 257 (286)
Q Consensus 184 ~l~~n~l~~~~p~~~-~~-~~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l 257 (286)
+++++.+.......+ .. -++|..|+++|..- ...+..-..+++++..|||++|. ++......|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999998764332221 11 25788899988632 11233344788999999998874 56556677888999999999
Q ss_pred ccCcccccchHH---HhhccCCCceee
Q 023193 258 SENKLQGMIINF---LQFYSSSACFCI 281 (286)
Q Consensus 258 ~~n~l~~~~~~~---l~~l~~l~~l~l 281 (286)
+.|. +.+|.. +...+.+.++++
T Consensus 346 sRCY--~i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 346 SRCY--DIIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred hhhc--CCChHHeeeeccCcceEEEEe
Confidence 9887 445543 344455555554
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.52 E-value=1.2e-07 Score=90.98 Aligned_cols=105 Identities=26% Similarity=0.272 Sum_probs=65.4
Q ss_pred CCCEEEcccCC--CCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEe
Q 023193 106 SLQSLDLSFNQ--LSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEIL 183 (286)
Q Consensus 106 ~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 183 (286)
.|+.|-+.+|. +....+..|..++.|++||+++|.--+.+|..++.+.+|++|++++..+. .+|..+ +++.+|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l-~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGL-GNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHH-HHHHhhhee
Confidence 56666666664 33223333555677777777766655667777777777777777777776 667666 666777777
Q ss_pred eeeccccCCCCCccCcCCCCcceEecccC
Q 023193 184 SLSQNMFHGGIPSTLSNCTYLQKLSLPYN 212 (286)
Q Consensus 184 ~l~~n~l~~~~p~~~~~~~~L~~L~l~~n 212 (286)
++..+.....+|.....+.+|++|.+...
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 77666544444554555666666666544
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.43 E-value=3.3e-07 Score=87.95 Aligned_cols=128 Identities=25% Similarity=0.314 Sum_probs=63.9
Q ss_pred CCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCC--CCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccE
Q 023193 105 SSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQ--LSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEI 182 (286)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 182 (286)
...+.+.+.+|.+. .++... ..++|++|-+..|. +....+..|..++.|++||+++|.--+.+|..+ +.+.+|++
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhc
Confidence 34445555555443 122111 23345555555554 332223334455556666665554434555555 55555666
Q ss_pred eeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccc
Q 023193 183 LSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRN 236 (286)
Q Consensus 183 L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 236 (286)
|++++..+. .+|..++++..|.+|++..+.....+|.....+++|++|.+..-
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 666555555 55555555555556655555443344444444555555555443
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=2.5e-08 Score=72.62 Aligned_cols=81 Identities=23% Similarity=0.410 Sum_probs=40.0
Q ss_pred CcEEEccCCCCCccCCcccc-CCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEec
Q 023193 131 LKYVNFRENQLSGAFPSLIF-NKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSL 209 (286)
Q Consensus 131 L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l 209 (286)
|...++++|.+. .+|..|. ..+.++.+++++|.++ .+|.++ ..++.|+.+++..|.+. ..|..+..+.++..|+.
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~-Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEEL-AAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHH-hhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 444455555554 2333332 2334555555555554 455553 55555555555555554 33444444555555555
Q ss_pred ccCCCc
Q 023193 210 PYNDFS 215 (286)
Q Consensus 210 ~~n~l~ 215 (286)
.+|.+.
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 555544
No 49
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.36 E-value=5.7e-07 Score=52.72 Aligned_cols=40 Identities=43% Similarity=0.977 Sum_probs=29.8
Q ss_pred HHhHHHHHHHHHhcCCCCCccccCCCCCC--CCCCCceeeEec
Q 023193 37 TADQDGLLALKAHITHDPTNFLAKNWNTR--TLVCNWTGVTCD 77 (286)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~~w~~~--~~~c~~~g~~c~ 77 (286)
..|..+|++||..+..+|...+.+ |... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~-W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSS-WNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT---TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCccccc-CCCcCCCCCeeeccEEeC
Confidence 468999999999997777666777 9987 799999999995
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=1e-08 Score=93.05 Aligned_cols=127 Identities=24% Similarity=0.267 Sum_probs=93.3
Q ss_pred CCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeee
Q 023193 106 SLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSL 185 (286)
Q Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l 185 (286)
.|...+++.|.+. ....++.-++.++.|++++|+++... .+..++.|++||++.|.++ .+|..-... .+|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g-c~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVG-CKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhh-hhheeeee
Confidence 3556666677665 45566777888999999999987543 7778899999999999997 666543222 34889999
Q ss_pred eccccCCCCCccCcCCCCcceEecccCCCccccc-hhhcCCcccceeecccccCC
Q 023193 186 SQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIP-KEIGNLNKLKRLYLGRNRLQ 239 (286)
Q Consensus 186 ~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 239 (286)
.+|.++.. ..+.++.+|+.||+++|-+.+.-. ..+..+..|+.|+|.||.+.
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99988622 346778889999999998876321 23456678889999999886
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.29 E-value=1e-06 Score=51.83 Aligned_cols=37 Identities=35% Similarity=0.658 Sum_probs=22.0
Q ss_pred ccceeecccccCCCCchhhhcCCCCCCEEecccCcccc
Q 023193 227 KLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQG 264 (286)
Q Consensus 227 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 264 (286)
+|++|++++|.++ .+|+.++++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4666666666666 445556666666666666666653
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=4e-07 Score=74.75 Aligned_cols=84 Identities=26% Similarity=0.275 Sum_probs=40.9
Q ss_pred CCCCEEEcccCCCCc--cCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccE
Q 023193 105 SSLQSLDLSFNQLSG--SIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEI 182 (286)
Q Consensus 105 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 182 (286)
+.++++++.+|.++. .+..-+..+|.|++|+++.|++...+........+|+++.|.+..+...-.......++.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 455555666655542 122334455556666666665543222222334455555555555543333333344555555
Q ss_pred eeeecc
Q 023193 183 LSLSQN 188 (286)
Q Consensus 183 L~l~~n 188 (286)
|.++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 555555
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.21 E-value=8.7e-07 Score=83.03 Aligned_cols=189 Identities=20% Similarity=0.212 Sum_probs=123.9
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccC-------------chhh--hcCCCCcEEEccCCCCC-cc
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSI-------------PSAI--FGTYTLKYVNFRENQLS-GA 144 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------~~~~--~~l~~L~~L~l~~n~l~-~~ 144 (286)
-+++.+++.+.......-....... |+.+.+.+-...+.. ...+ ..-.+|+.|++++...- ..
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 4567777777666543333333333 666666654322110 0011 11246999999886542 12
Q ss_pred CCccc-cCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCcc-ccchhh
Q 023193 145 FPSLI-FNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSG-AIPKEI 222 (286)
Q Consensus 145 ~p~~~-~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~-~~~~~~ 222 (286)
.|..+ ..+|+|+.|.+++-.+...--..++.++++|..||+++.+++.. ..++.+++|+.|.+.+=.+.. ..-..+
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 22223 35799999999987775332345678999999999999999743 678889999999988766653 222456
Q ss_pred cCCcccceeecccccCCCCc--h----hhhcCCCCCCEEecccCcccccchHHHhh
Q 023193 223 GNLNKLKRLYLGRNRLQGEI--P----QEFGNLAELEQMSLSENKLQGMIINFLQF 272 (286)
Q Consensus 223 ~~l~~L~~L~L~~n~l~~~~--~----~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 272 (286)
.++++|+.||++........ . +.-..+|+|+.||.|++.+++...+.+..
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 78999999999987765432 1 22345899999999999998776644433
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=6e-07 Score=73.74 Aligned_cols=176 Identities=18% Similarity=0.200 Sum_probs=101.6
Q ss_pred CcEEEEEeCCCCCcc--cCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccC-CccccCCCCCCE
Q 023193 81 HRVTILNISRLNLTG--TIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAF-PSLIFNKSSLQL 157 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~ 157 (286)
.+|+.+|+.+|.|+. .+...+.+++.|+.|+++.|.+...+...-....+|++|.+.+..+...- ...+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 567888888888873 34555678889999999998887333222245678888888887776432 234556777888
Q ss_pred EEeecCCCCCC---------Cchh-------------------hhcCCCCccEeeeeccccCCC-CCccCcCCCCcceEe
Q 023193 158 LDFAHNTLSDE---------IPAN-------------------ICSNLPFLEILSLSQNMFHGG-IPSTLSNCTYLQKLS 208 (286)
Q Consensus 158 L~L~~n~l~~~---------l~~~-------------------~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~~~L~~L~ 208 (286)
|.++.|.+... .... +...++++..+.+..|.+... .-..+...+.+.-|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 88887743210 0000 001234455555555544321 112223344455666
Q ss_pred cccCCCccc-cchhhcCCcccceeecccccCCCCchh------hhcCCCCCCEEe
Q 023193 209 LPYNDFSGA-IPKEIGNLNKLKRLYLGRNRLQGEIPQ------EFGNLAELEQMS 256 (286)
Q Consensus 209 l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~ 256 (286)
|+.|++... .-+++.+++.|..|.+.+|.+...+.. .++++++++.|+
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 666666532 124556666777777777766543321 245566666654
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.16 E-value=4.1e-06 Score=65.16 Aligned_cols=105 Identities=20% Similarity=0.189 Sum_probs=59.6
Q ss_pred CCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCch-hhhcCCCCccEe
Q 023193 105 SSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPA-NICSNLPFLEIL 183 (286)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~-~~~~~l~~L~~L 183 (286)
.+...+||++|.+.. ...|..++.|.+|.+.+|+|+...|.--.-+++|..|.+.+|.+. .+.+ .-...+++|++|
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 345667777777642 234556667777777777777555554445566777777777665 2211 112445666666
Q ss_pred eeeccccCCC---CCccCcCCCCcceEecccC
Q 023193 184 SLSQNMFHGG---IPSTLSNCTYLQKLSLPYN 212 (286)
Q Consensus 184 ~l~~n~l~~~---~p~~~~~~~~L~~L~l~~n 212 (286)
.+-+|.++.. --..+..+++|+.||+++-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6666665421 1122445566666666553
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.13 E-value=6.4e-06 Score=67.05 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=17.4
Q ss_pred CcEEEEEeCCCCCcccCchh----ccCCCCCCEEEcccCCCC
Q 023193 81 HRVTILNISRLNLTGTIPSQ----LGNLSSLQSLDLSFNQLS 118 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~----~~~l~~L~~L~l~~n~l~ 118 (286)
+++..++++.|.+....|+. +++-..|++|.+++|.+.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 44555555555544333322 233344555555555443
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=4.3e-06 Score=49.13 Aligned_cols=36 Identities=25% Similarity=0.503 Sum_probs=14.8
Q ss_pred CCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCC
Q 023193 130 TLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLS 166 (286)
Q Consensus 130 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 166 (286)
+|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 22333444444444444444443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.96 E-value=1.4e-05 Score=62.22 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=58.1
Q ss_pred EEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCC-ccccCCCCCCEEEee
Q 023193 83 VTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFP-SLIFNKSSLQLLDFA 161 (286)
Q Consensus 83 l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~ 161 (286)
...+||++|.+- .+ +.|..++.|.+|.+.+|.++.+.|.--..+++|+.|.+.+|++..... ..+..+++|++|.+-
T Consensus 44 ~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 345666666654 12 225556666677777777665555544455667777777766652211 234556667777766
Q ss_pred cCCCCCCCch---hhhcCCCCccEeeeeccc
Q 023193 162 HNTLSDEIPA---NICSNLPFLEILSLSQNM 189 (286)
Q Consensus 162 ~n~l~~~l~~---~~~~~l~~L~~L~l~~n~ 189 (286)
+|+.+ .-.. .+...+++|+.||+..-.
T Consensus 122 ~Npv~-~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 122 GNPVE-HKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CCchh-cccCceeEEEEecCcceEeehhhhh
Confidence 66665 2211 112456666666665543
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.88 E-value=5.7e-05 Score=55.63 Aligned_cols=121 Identities=22% Similarity=0.329 Sum_probs=40.3
Q ss_pred hhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCc
Q 023193 125 IFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYL 204 (286)
Q Consensus 125 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L 204 (286)
|.++.+|+.+.+.. .+.......|..+++|+.+.+..+ +. .++...|....+++.+.+.. .+.......|..++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence 33444444444442 233333334444445555555443 33 34444444554555555533 2222223344445555
Q ss_pred ceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCC
Q 023193 205 QKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAEL 252 (286)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 252 (286)
+.+.+..+ +.......+.+. +++.+.+.. .++......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555443 332333344443 555555543 3332334445444443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=6.3e-05 Score=65.76 Aligned_cols=131 Identities=18% Similarity=0.253 Sum_probs=75.9
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCC-CCCccCCccccCCCCCCEEE
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFREN-QLSGAFPSLIFNKSSLQLLD 159 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~ 159 (286)
...+.|+++++.++ .+|. + -.+|+.|.++++.-...+|..+ .++|++|++++| .+. .+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence 55678889988776 3452 1 1368889988754433566544 357889999888 443 4443 477777
Q ss_pred eecCCCC--CCCchhhhcCCCCccEeeeeccc-cC-CCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeeccc
Q 023193 160 FAHNTLS--DEIPANICSNLPFLEILSLSQNM-FH-GGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGR 235 (286)
Q Consensus 160 L~~n~l~--~~l~~~~~~~l~~L~~L~l~~n~-l~-~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 235 (286)
+.++... +.+|. +|+.|.+.+++ .. ..+|.. -.++|++|++++|... ..|..+. .+|+.|+++.
T Consensus 119 L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 119 IKGSATDSIKNVPN-------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred eCCCCCcccccCcc-------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 7766543 12333 45566654322 11 011111 1147888888877655 2333332 4677888776
Q ss_pred c
Q 023193 236 N 236 (286)
Q Consensus 236 n 236 (286)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 5
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.73 E-value=0.00013 Score=53.76 Aligned_cols=122 Identities=25% Similarity=0.311 Sum_probs=56.6
Q ss_pred hccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCC
Q 023193 100 QLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPF 179 (286)
Q Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 179 (286)
.|.+..+|+.+.+.. .+.......|.++.+++.+.+..+ +.......+..+.+++.+.+.. .+. .++...|....+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 455666777777664 444444556666767777777664 5544445566666777777755 443 455666666777
Q ss_pred ccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCccc
Q 023193 180 LEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKL 228 (286)
Q Consensus 180 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 228 (286)
++.+.+..+ +.......+.++ .++.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 777777654 443344455665 777777665 3333444555555554
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00017 Score=63.07 Aligned_cols=136 Identities=18% Similarity=0.233 Sum_probs=87.5
Q ss_pred ccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecC-CCCCCCchhhhcCCCC
Q 023193 101 LGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHN-TLSDEIPANICSNLPF 179 (286)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~l~~~~~~~l~~ 179 (286)
+..+.+++.|++++|.+. .+|. -..+|++|.++++.--..+|..+ ..+|+.|++++| .+. .+|. +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-------c
Confidence 455688999999999877 5562 23369999998865434666554 257999999988 554 4543 4
Q ss_pred ccEeeeeccccC--CCCCccCcCCCCcceEecccCC-Cc-cccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEE
Q 023193 180 LEILSLSQNMFH--GGIPSTLSNCTYLQKLSLPYND-FS-GAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQM 255 (286)
Q Consensus 180 L~~L~l~~n~l~--~~~p~~~~~~~~L~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 255 (286)
|+.|++..+... +.+|. +|+.|.+.+++ .. ...|..+ .++|++|++++|... .+|..+. .+|+.|
T Consensus 114 Le~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred cceEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 677777766543 13333 56677775433 11 1112111 157999999999876 3444333 578899
Q ss_pred ecccCc
Q 023193 256 SLSENK 261 (286)
Q Consensus 256 ~l~~n~ 261 (286)
+++.+.
T Consensus 183 ~ls~n~ 188 (426)
T PRK15386 183 TLHIEQ 188 (426)
T ss_pred Eecccc
Confidence 988763
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=0.0001 Score=69.41 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=104.3
Q ss_pred CCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCC-------------ccc--cCCCCCCEEEeecCCCC-CCC
Q 023193 106 SLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFP-------------SLI--FNKSSLQLLDFAHNTLS-DEI 169 (286)
Q Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-------------~~~--~~l~~L~~L~L~~n~l~-~~l 169 (286)
++...++.+..+....-..+.... |+.+.+.+-......- ..+ ..-.+|++|+++|...- ...
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W 139 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW 139 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence 455666666555433323333333 7777776543221100 000 12357999999986542 234
Q ss_pred chhhhcCCCCccEeeeeccccCC-CCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC-Cchhhhc
Q 023193 170 PANICSNLPFLEILSLSQNMFHG-GIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG-EIPQEFG 247 (286)
Q Consensus 170 ~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~ 247 (286)
|..+...+|+|+.|.+++-.+.. ..-....++++|..||+++.+++.. ..++++++|++|.+.+=.+.. ..-..+.
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 55666779999999999876643 2334456789999999999999854 668899999999998877764 3345678
Q ss_pred CCCCCCEEecccCcccc
Q 023193 248 NLAELEQMSLSENKLQG 264 (286)
Q Consensus 248 ~l~~L~~L~l~~n~l~~ 264 (286)
++++|++||+|..+...
T Consensus 218 ~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNND 234 (699)
T ss_pred cccCCCeeecccccccc
Confidence 89999999999988543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00016 Score=58.62 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=17.7
Q ss_pred CCCCCCEEEeecC--CCCCCCchhhhcCCCCccEeeeeccccC
Q 023193 151 NKSSLQLLDFAHN--TLSDEIPANICSNLPFLEILSLSQNMFH 191 (286)
Q Consensus 151 ~l~~L~~L~L~~n--~l~~~l~~~~~~~l~~L~~L~l~~n~l~ 191 (286)
.+++|+.|.++.| ++++.++.-. ...++|+++++++|+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccc
Confidence 4445555555555 3332232222 23355555555555443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.00034 Score=56.72 Aligned_cols=93 Identities=18% Similarity=0.230 Sum_probs=60.3
Q ss_pred cCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCC--CCCccCCccccCCCCCCEEEeecCCCCCCCchhh
Q 023193 96 TIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFREN--QLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANI 173 (286)
Q Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~ 173 (286)
.+......+..|+.+++.+..++.. ..|-.+++|++|.++.| ++.+-++.-...+++|+++++++|++.. +..+
T Consensus 34 ~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred Ccccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence 3555555666777777777666521 33445778888899888 5555555555566889999999988852 2222
Q ss_pred --hcCCCCccEeeeeccccCC
Q 023193 174 --CSNLPFLEILSLSQNMFHG 192 (286)
Q Consensus 174 --~~~l~~L~~L~l~~n~l~~ 192 (286)
...+.+|..|++.+|..+.
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcchhhhhcccCCccc
Confidence 1345667777777776543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=6e-05 Score=61.70 Aligned_cols=100 Identities=23% Similarity=0.186 Sum_probs=55.1
Q ss_pred CCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCC-CccCcCCCCcce
Q 023193 128 TYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGI-PSTLSNCTYLQK 206 (286)
Q Consensus 128 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~~~~L~~ 206 (286)
+.+.+.|++.++.+.++ ....+++.|++|.|+-|.++ .+.. +..+++|++|+|..|.|.... -..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 44556667776666533 22335666777777777765 3322 245666677777666665321 123455666666
Q ss_pred EecccCCCccccch-----hhcCCcccceee
Q 023193 207 LSLPYNDFSGAIPK-----EIGNLNKLKRLY 232 (286)
Q Consensus 207 L~l~~n~l~~~~~~-----~~~~l~~L~~L~ 232 (286)
|.|..|.-.|.-+. .+.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666665554332 233445555544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=6.8e-05 Score=61.41 Aligned_cols=100 Identities=30% Similarity=0.436 Sum_probs=61.3
Q ss_pred CCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccc-hhhcCCcccce
Q 023193 152 KSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIP-KEIGNLNKLKR 230 (286)
Q Consensus 152 l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 230 (286)
+.+.+.|+.-++.++ .+ .++..++.|+.|.|+-|.|+.. +.+..|++|++|+|..|.|...-. ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 345566666677665 22 3445677777777777777533 236667777777777777664221 23466777777
Q ss_pred eecccccCCCCch-----hhhcCCCCCCEEe
Q 023193 231 LYLGRNRLQGEIP-----QEFGNLAELEQMS 256 (286)
Q Consensus 231 L~L~~n~l~~~~~-----~~~~~l~~L~~L~ 256 (286)
|.|..|.-.|.-+ ..+..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777777665443 2355566666654
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.75 E-value=0.00053 Score=33.59 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=11.6
Q ss_pred CCEEecccCcccccchHHHhh
Q 023193 252 LEQMSLSENKLQGMIINFLQF 272 (286)
Q Consensus 252 L~~L~l~~n~l~~~~~~~l~~ 272 (286)
|++||+++|+++ .+|++|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 566666666666 55554543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.97 E-value=0.0027 Score=31.03 Aligned_cols=19 Identities=42% Similarity=0.627 Sum_probs=10.4
Q ss_pred cceeecccccCCCCchhhhc
Q 023193 228 LKRLYLGRNRLQGEIPQEFG 247 (286)
Q Consensus 228 L~~L~L~~n~l~~~~~~~~~ 247 (286)
|++||+++|.++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555666666665 4444443
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.91 E-value=5.8e-05 Score=68.03 Aligned_cols=183 Identities=23% Similarity=0.304 Sum_probs=110.0
Q ss_pred EEEEEeCCCCCccc----CchhccCCCCCCEEEcccCCCCccCchhh----hcC-CCCcEEEccCCCCCcc----CCccc
Q 023193 83 VTILNISRLNLTGT----IPSQLGNLSSLQSLDLSFNQLSGSIPSAI----FGT-YTLKYVNFRENQLSGA----FPSLI 149 (286)
Q Consensus 83 l~~l~l~~~~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~p~~~ 149 (286)
+..+.+.+|.+... +...+.....|+.|++++|.+.......+ ... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55677777777643 33445566778888888888773322222 222 3466777777777643 33444
Q ss_pred cCCCCCCEEEeecCCCCC----CCchhh---hcCCCCccEeeeeccccCCC----CCccCcCCCC-cceEecccCCCccc
Q 023193 150 FNKSSLQLLDFAHNTLSD----EIPANI---CSNLPFLEILSLSQNMFHGG----IPSTLSNCTY-LQKLSLPYNDFSGA 217 (286)
Q Consensus 150 ~~l~~L~~L~L~~n~l~~----~l~~~~---~~~l~~L~~L~l~~n~l~~~----~p~~~~~~~~-L~~L~l~~n~l~~~ 217 (286)
.....+++++++.|.+.. .++... +....++++|++.+|.++.. .-..+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 556778888888877631 112222 12456777888888776521 1122333344 56677877777642
Q ss_pred ----cchhhcCC-cccceeecccccCCCC----chhhhcCCCCCCEEecccCccccc
Q 023193 218 ----IPKEIGNL-NKLKRLYLGRNRLQGE----IPQEFGNLAELEQMSLSENKLQGM 265 (286)
Q Consensus 218 ----~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~ 265 (286)
....+..+ ..+++++++.|.++.. +...+..+++++.+.++.|.+...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 22333444 5677888888888753 455666777888888888887654
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.74 E-value=0.00011 Score=66.25 Aligned_cols=167 Identities=23% Similarity=0.236 Sum_probs=115.0
Q ss_pred CCCEEEcccCCCCcc----CchhhhcCCCCcEEEccCCCCCccCCcc----ccCC-CCCCEEEeecCCCCCC----Cchh
Q 023193 106 SLQSLDLSFNQLSGS----IPSAIFGTYTLKYVNFRENQLSGAFPSL----IFNK-SSLQLLDFAHNTLSDE----IPAN 172 (286)
Q Consensus 106 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~----~~~l-~~L~~L~L~~n~l~~~----l~~~ 172 (286)
.+..+.+.+|.+... +...+...++|+.|++++|.+.+..-.. +... ..+++|++..+.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 377888999988743 3345567888999999999997432222 2222 5678888888887643 3344
Q ss_pred hhcCCCCccEeeeeccccCC----CCCccCc----CCCCcceEecccCCCccc----cchhhcCCcc-cceeecccccCC
Q 023193 173 ICSNLPFLEILSLSQNMFHG----GIPSTLS----NCTYLQKLSLPYNDFSGA----IPKEIGNLNK-LKRLYLGRNRLQ 239 (286)
Q Consensus 173 ~~~~l~~L~~L~l~~n~l~~----~~p~~~~----~~~~L~~L~l~~n~l~~~----~~~~~~~l~~-L~~L~L~~n~l~ 239 (286)
+ .....++.+++..|.+.. .++..+. ...++++|.+..|.++.. +...+...+. +.++++..|.+.
T Consensus 168 L-~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 168 L-EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred H-hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 4 447889999999998742 2333333 467899999999988731 1223344455 777999999988
Q ss_pred CC----chhhhcCC-CCCCEEecccCcccccchHHHhhc
Q 023193 240 GE----IPQEFGNL-AELEQMSLSENKLQGMIINFLQFY 273 (286)
Q Consensus 240 ~~----~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l 273 (286)
+. ..+.+... +.+++++++.|.+++.....+.+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~ 285 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEV 285 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHH
Confidence 54 34556666 678999999999988766665554
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.73 E-value=0.0016 Score=59.04 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=15.1
Q ss_pred CCCCCEEEeecCC-CCCCCchhhhcCCCCccEeeeecc
Q 023193 152 KSSLQLLDFAHNT-LSDEIPANICSNLPFLEILSLSQN 188 (286)
Q Consensus 152 l~~L~~L~L~~n~-l~~~l~~~~~~~l~~L~~L~l~~n 188 (286)
+++|++|.+.++. +++.--..+...++.|++|+++++
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 4445555444333 232222222234444555555444
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.43 E-value=0.009 Score=29.77 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=15.7
Q ss_pred CCCCCEEecccCcccccchHHHh
Q 023193 249 LAELEQMSLSENKLQGMIINFLQ 271 (286)
Q Consensus 249 l~~L~~L~l~~n~l~~~~~~~l~ 271 (286)
+++|+.|++++|++++..+..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 36788888888888887777665
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=0.022 Score=44.76 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=15.9
Q ss_pred ccEeeeeccccCCCCCccCcCCCCcceEecccC
Q 023193 180 LEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYN 212 (286)
Q Consensus 180 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n 212 (286)
++.++-++..|..+--..+.+++.++.|.+.++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 445555555554444444444445555544444
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.69 E-value=0.069 Score=27.03 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=12.5
Q ss_pred CCCCEEEeecCCCCCCCchhhh
Q 023193 153 SSLQLLDFAHNTLSDEIPANIC 174 (286)
Q Consensus 153 ~~L~~L~L~~n~l~~~l~~~~~ 174 (286)
++|++|++++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5665553
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.69 E-value=0.069 Score=27.03 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=12.5
Q ss_pred CCCCEEEeecCCCCCCCchhhh
Q 023193 153 SSLQLLDFAHNTLSDEIPANIC 174 (286)
Q Consensus 153 ~~L~~L~L~~n~l~~~l~~~~~ 174 (286)
++|++|++++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5665553
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.56 E-value=0.051 Score=24.56 Aligned_cols=11 Identities=45% Similarity=0.751 Sum_probs=3.2
Q ss_pred CCEEEeecCCC
Q 023193 155 LQLLDFAHNTL 165 (286)
Q Consensus 155 L~~L~L~~n~l 165 (286)
|++|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.02 E-value=0.051 Score=49.19 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=27.1
Q ss_pred CCCcceEecccCC-Cccccchhhc-CCcccceeeccccc-CCCC-chhhhcCCCCCCEEecccCc
Q 023193 201 CTYLQKLSLPYND-FSGAIPKEIG-NLNKLKRLYLGRNR-LQGE-IPQEFGNLAELEQMSLSENK 261 (286)
Q Consensus 201 ~~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~ 261 (286)
+.+|+.++++++. +++..-..++ .+++|++|.+.++. +++. +-.....+++|++|+++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3445555555544 3332222222 24555555555444 3332 22233345555555555554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.85 E-value=0.0028 Score=50.91 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=57.0
Q ss_pred cCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCE
Q 023193 175 SNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQ 254 (286)
Q Consensus 175 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 254 (286)
......+.||++.|++. .....++.++.+..++++.|++. ..|.-++....+..+++..|.++ ..|.+++..+++++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 34556666777777664 34445566666777777777766 55666666666667777777666 56667777777777
Q ss_pred EecccCccc
Q 023193 255 MSLSENKLQ 263 (286)
Q Consensus 255 L~l~~n~l~ 263 (286)
+++-+|.++
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 777777754
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.52 E-value=0.11 Score=26.19 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=10.1
Q ss_pred CCCCEEecccCcccccchHH
Q 023193 250 AELEQMSLSENKLQGMIINF 269 (286)
Q Consensus 250 ~~L~~L~l~~n~l~~~~~~~ 269 (286)
++|+.|++++|+++...+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34555555555555444333
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.52 E-value=0.11 Score=26.19 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=10.1
Q ss_pred CCCCEEecccCcccccchHH
Q 023193 250 AELEQMSLSENKLQGMIINF 269 (286)
Q Consensus 250 ~~L~~L~l~~n~l~~~~~~~ 269 (286)
++|+.|++++|+++...+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34555555555555444333
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.49 E-value=0.023 Score=44.69 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=15.7
Q ss_pred CcEEEccCCCCCccCCccccCCCCCCEEEeecC
Q 023193 131 LKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHN 163 (286)
Q Consensus 131 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 163 (286)
++.++-++..+....-+.+.+++.++.|.+.++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 445555555544433344444445555544444
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.26 E-value=0.0066 Score=48.82 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=38.4
Q ss_pred ccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCc
Q 023193 101 LGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFL 180 (286)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 180 (286)
+..+...+.||++.|.+- .....|.-+..+..|+++.|++. ..|..+.....++.+++..|..+ ..|... +..+++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~-~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ-KKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc-cccCCc
Confidence 344445555555555443 22233334444444555555444 34444444444444444444443 344433 444444
Q ss_pred cEeeeeccc
Q 023193 181 EILSLSQNM 189 (286)
Q Consensus 181 ~~L~l~~n~ 189 (286)
+++++..|.
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 444444444
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.94 E-value=0.26 Score=43.17 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=58.3
Q ss_pred cCCCCccEeeeeccc-cCCCCCccC-cCCCCcceEecccCCCcc--ccchhhcCCcccceeecccccCCCCc-----hhh
Q 023193 175 SNLPFLEILSLSQNM-FHGGIPSTL-SNCTYLQKLSLPYNDFSG--AIPKEIGNLNKLKRLYLGRNRLQGEI-----PQE 245 (286)
Q Consensus 175 ~~l~~L~~L~l~~n~-l~~~~p~~~-~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~ 245 (286)
.+..+|+.+.++.++ +++.-...+ .++..|+.+++.+..... .+...-.+++.|+++.++.+.+.... ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 456677777776664 222111112 345567777766654321 11222245677788877777544222 122
Q ss_pred hcCCCCCCEEecccCc-ccccchHHHhhccCCCce
Q 023193 246 FGNLAELEQMSLSENK-LQGMIINFLQFYSSSACF 279 (286)
Q Consensus 246 ~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~l~~l 279 (286)
-.....+..+.+++++ ++....+.+..+++++..
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 2345567777788777 456666777777776653
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.07 E-value=0.33 Score=42.55 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=90.9
Q ss_pred CCCCcEEEccCCCCCc-cCCcc-ccCCCCCCEEEeecCC-CCCCCchhhhcCCCCccEeeeeccccC--CCCCccCcCCC
Q 023193 128 TYTLKYVNFRENQLSG-AFPSL-IFNKSSLQLLDFAHNT-LSDEIPANICSNLPFLEILSLSQNMFH--GGIPSTLSNCT 202 (286)
Q Consensus 128 l~~L~~L~l~~n~l~~-~~p~~-~~~l~~L~~L~L~~n~-l~~~l~~~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~~~ 202 (286)
+..|+.+..+++.-.+ ..-.. ...+.+|+++-+.+++ ++..--..+..+.+.|+.+++..+... +.+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4456666665554321 11111 2356788888888775 332222233356788888888777542 22334445678
Q ss_pred CcceEecccCCCcccc-----chhhcCCcccceeecccccCCC-CchhhhcCCCCCCEEecccCc-c-cccchHHHhhcc
Q 023193 203 YLQKLSLPYNDFSGAI-----PKEIGNLNKLKRLYLGRNRLQG-EIPQEFGNLAELEQMSLSENK-L-QGMIINFLQFYS 274 (286)
Q Consensus 203 ~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l-~~~~~~~l~~l~ 274 (286)
.|+.+.++.+...... ...-..+..++.+.|++++.+. ..-+.+..+++|+.+++-++. + ...+...-.+++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 8999999876442211 1122345678888898887653 334567778899999998887 3 334445555666
Q ss_pred CCCce
Q 023193 275 SSACF 279 (286)
Q Consensus 275 ~l~~l 279 (286)
++++.
T Consensus 453 ~i~v~ 457 (483)
T KOG4341|consen 453 NIKVH 457 (483)
T ss_pred cceeh
Confidence 66543
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.01 E-value=0.42 Score=24.69 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=14.1
Q ss_pred CCCCEEecccCcccccchHHHh
Q 023193 250 AELEQMSLSENKLQGMIINFLQ 271 (286)
Q Consensus 250 ~~L~~L~l~~n~l~~~~~~~l~ 271 (286)
++|++|||++|.+.......++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 4577777777777655544444
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.30 E-value=1.4 Score=22.07 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=13.9
Q ss_pred CCCCCEEecccCc-ccccchHHH
Q 023193 249 LAELEQMSLSENK-LQGMIINFL 270 (286)
Q Consensus 249 l~~L~~L~l~~n~-l~~~~~~~l 270 (286)
+++|++|++++|. +++.....+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 4567777777775 665544444
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.41 E-value=2 Score=21.82 Aligned_cols=14 Identities=43% Similarity=0.793 Sum_probs=10.0
Q ss_pred CCCCEEecccCccc
Q 023193 250 AELEQMSLSENKLQ 263 (286)
Q Consensus 250 ~~L~~L~l~~n~l~ 263 (286)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777777777764
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=76.78 E-value=1.4 Score=40.08 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=6.6
Q ss_pred cceeecccccCCC
Q 023193 228 LKRLYLGRNRLQG 240 (286)
Q Consensus 228 L~~L~L~~n~l~~ 240 (286)
|++|-+.||.+..
T Consensus 272 Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 272 LEELVLEGNPLCT 284 (585)
T ss_pred HHHeeecCCcccc
Confidence 4455555555543
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.12 E-value=2.2 Score=21.67 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=8.8
Q ss_pred CCCEEEeecCCCCCCCch
Q 023193 154 SLQLLDFAHNTLSDEIPA 171 (286)
Q Consensus 154 ~L~~L~L~~n~l~~~l~~ 171 (286)
+|++|+.++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 3555555555554 4443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.17 E-value=2.7 Score=38.38 Aligned_cols=65 Identities=25% Similarity=0.157 Sum_probs=35.8
Q ss_pred CCCCCCEEEcccCCCCcc--CchhhhcCCCCcEEEccCCCCCccCCcccc--CCCCCCEEEeecCCCCC
Q 023193 103 NLSSLQSLDLSFNQLSGS--IPSAIFGTYTLKYVNFRENQLSGAFPSLIF--NKSSLQLLDFAHNTLSD 167 (286)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~ 167 (286)
+.+.+..+++++|.+... +..--...|+|++|+|++|...-....++. +...|++|-+.||++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 455667777777776522 122223456788888888722111111222 23347777788887754
No 92
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=47.62 E-value=28 Score=28.13 Aligned_cols=13 Identities=31% Similarity=0.059 Sum_probs=6.4
Q ss_pred CCccEeeeecccc
Q 023193 178 PFLEILSLSQNMF 190 (286)
Q Consensus 178 ~~L~~L~l~~n~l 190 (286)
.+++--.|.++++
T Consensus 196 aN~eGA~L~gcNf 208 (302)
T KOG1665|consen 196 ANAEGASLKGCNF 208 (302)
T ss_pred cccccccccCcCC
Confidence 3444445555555
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=38.68 E-value=53 Score=29.92 Aligned_cols=185 Identities=17% Similarity=0.083 Sum_probs=89.2
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhh---hcCCCCcEEEccCCCCCccCCccccCC---CC
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAI---FGTYTLKYVNFRENQLSGAFPSLIFNK---SS 154 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~p~~~~~l---~~ 154 (286)
.+++.++++.|.+....|..+..-. --+.++.++++...-..+ .+-..+.+++++.|...+.+|..+..+ ..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 5677888888888766654443211 115556555542111111 011247778888887776666554322 23
Q ss_pred CCEEEeecCCCCCC-Cc-hhhhcCCCCccEeeeeccccCC----CCC----ccCcCCCCcceEecccCCCccccc-hhhc
Q 023193 155 LQLLDFAHNTLSDE-IP-ANICSNLPFLEILSLSQNMFHG----GIP----STLSNCTYLQKLSLPYNDFSGAIP-KEIG 223 (286)
Q Consensus 155 L~~L~L~~n~l~~~-l~-~~~~~~l~~L~~L~l~~n~l~~----~~p----~~~~~~~~L~~L~l~~n~l~~~~~-~~~~ 223 (286)
++.++.+...++-. .. ...++..+++...+++.|..+- +.+ +.+..-+++ +|++.+......-+ ..+-
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhc
Confidence 66666666554311 11 1122344567777777765431 222 223333445 55555554432211 1110
Q ss_pred -----CCcccceeecccccCCCCchhhhcCC---CCCCEEecccCcccccchHHH
Q 023193 224 -----NLNKLKRLYLGRNRLQGEIPQEFGNL---AELEQMSLSENKLQGMIINFL 270 (286)
Q Consensus 224 -----~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~l 270 (286)
+-..=-.+|+..|...+. .....+ ..+++|+..+|.+.|+.-...
T Consensus 322 gla~ne~t~g~rldl~~cp~~~a--~vleaci~g~R~q~l~~rdnnldgeg~~vg 374 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLERA--EVLEACIFGQRVQVLLQRDNNLDGEGGAVG 374 (553)
T ss_pred ccccccccccccCChhhcccccc--chhhccccceeeeEeecccccccccccccc
Confidence 001112345555444321 111111 236777788887776665444
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.80 E-value=27 Score=38.73 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=27.4
Q ss_pred EccCCCCCccCCccccCCCCCCEEEeecCCCCC
Q 023193 135 NFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSD 167 (286)
Q Consensus 135 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 167 (286)
||++|+|+...+..|..+++|++|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578899987767778888999999999998863
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.90 E-value=28 Score=38.57 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=26.1
Q ss_pred eeeccccCCCCCccCcCCCCcceEecccCCCcc
Q 023193 184 SLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSG 216 (286)
Q Consensus 184 ~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 216 (286)
+|++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 577888886666678888889999999988763
Done!