Query 023193
Match_columns 286
No_of_seqs 260 out of 3646
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 17:54:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 4.3E-37 1.5E-41 262.4 18.4 244 34-282 2-276 (313)
2 4fcg_A Uncharacterized protein 100.0 3.2E-34 1.1E-38 246.1 13.0 245 32-281 21-308 (328)
3 3rgz_A Protein brassinosteroid 100.0 2.3E-33 7.7E-38 266.1 14.7 240 33-282 7-277 (768)
4 4eco_A Uncharacterized protein 100.0 1.7E-33 5.7E-38 261.7 10.9 242 35-282 27-385 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 6.5E-32 2.2E-36 256.6 11.9 238 33-283 264-628 (876)
6 3rgz_A Protein brassinosteroid 100.0 4.5E-29 1.5E-33 236.7 18.3 202 81-283 442-713 (768)
7 1ogq_A PGIP-2, polygalacturona 100.0 1E-29 3.5E-34 216.7 12.4 199 81-282 76-299 (313)
8 2o6q_A Variable lymphocyte rec 100.0 1.1E-28 3.9E-33 205.9 17.5 210 67-281 3-212 (270)
9 4fcg_A Uncharacterized protein 100.0 1E-28 3.5E-33 211.8 16.3 181 81-265 127-316 (328)
10 1ozn_A Reticulon 4 receptor; N 100.0 4E-28 1.4E-32 204.1 19.0 202 81-283 32-234 (285)
11 2z80_A TOLL-like receptor 2, v 100.0 9.1E-28 3.1E-32 207.9 13.7 184 81-265 52-237 (353)
12 2z66_A Variable lymphocyte rec 99.9 1.2E-27 4E-32 203.2 13.6 214 67-281 5-255 (306)
13 3m19_A Variable lymphocyte rec 99.9 1.1E-26 3.7E-31 191.8 16.8 192 67-265 3-194 (251)
14 3zyi_A Leucine-rich repeat-con 99.9 2.3E-26 7.7E-31 205.6 17.5 199 81-282 75-298 (452)
15 2o6q_A Variable lymphocyte rec 99.9 6E-26 2.1E-30 189.3 18.6 203 62-265 7-220 (270)
16 3zyj_A Leucine-rich repeat-con 99.9 3.7E-26 1.3E-30 203.6 17.6 200 81-282 64-287 (440)
17 3v47_A TOLL-like receptor 5B a 99.9 3.2E-26 1.1E-30 204.6 16.0 135 81-215 30-167 (455)
18 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-25 3.7E-30 189.2 17.8 185 81-266 56-241 (285)
19 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-25 5.9E-30 192.0 19.0 211 67-282 31-272 (332)
20 3zyj_A Leucine-rich repeat-con 99.9 5.3E-26 1.8E-30 202.5 16.3 180 81-263 88-292 (440)
21 3zyi_A Leucine-rich repeat-con 99.9 7.5E-26 2.6E-30 202.2 16.7 181 81-264 99-304 (452)
22 2z62_A TOLL-like receptor 4, v 99.9 5.9E-26 2E-30 189.9 13.9 200 81-282 28-232 (276)
23 3v47_A TOLL-like receptor 5B a 99.9 9.5E-26 3.3E-30 201.5 15.5 101 182-282 279-379 (455)
24 1xku_A Decorin; proteoglycan, 99.9 4.9E-25 1.7E-29 189.0 19.3 211 67-282 29-271 (330)
25 3oja_B Anopheles plasmodium-re 99.9 2.2E-25 7.6E-30 205.8 17.6 199 81-282 51-286 (597)
26 2z66_A Variable lymphocyte rec 99.9 5.2E-26 1.8E-30 193.0 11.3 184 81-266 78-264 (306)
27 3o6n_A APL1; leucine-rich repe 99.9 4.5E-25 1.5E-29 193.5 17.4 199 81-282 45-280 (390)
28 2xwt_C Thyrotropin receptor; s 99.9 3E-25 1E-29 181.8 14.9 195 81-282 31-234 (239)
29 2id5_A Lingo-1, leucine rich r 99.9 4.8E-25 1.6E-29 198.2 17.2 201 81-282 32-256 (477)
30 3rfs_A Internalin B, repeat mo 99.9 2.3E-24 7.8E-29 180.0 18.2 177 82-263 42-218 (272)
31 1p9a_G Platelet glycoprotein I 99.9 1.5E-24 5E-29 182.8 17.1 179 81-264 31-209 (290)
32 3rfs_A Internalin B, repeat mo 99.9 4.6E-25 1.6E-29 184.2 13.8 187 81-277 63-249 (272)
33 2z80_A TOLL-like receptor 2, v 99.9 3.7E-25 1.3E-29 191.5 13.7 203 80-283 75-310 (353)
34 2id5_A Lingo-1, leucine rich r 99.9 2.5E-24 8.6E-29 193.5 18.3 200 82-282 81-304 (477)
35 2z81_A CD282 antigen, TOLL-lik 99.9 7E-25 2.4E-29 200.3 13.6 196 68-265 3-211 (549)
36 1wwl_A Monocyte differentiatio 99.9 9.5E-26 3.2E-30 192.1 6.9 196 81-282 95-304 (312)
37 3t6q_A CD180 antigen; protein- 99.9 2E-24 7E-29 199.6 16.3 200 81-281 325-554 (606)
38 1xku_A Decorin; proteoglycan, 99.9 4.2E-24 1.4E-28 183.2 16.6 187 81-273 76-286 (330)
39 3t6q_A CD180 antigen; protein- 99.9 2.7E-24 9.3E-29 198.7 16.5 199 82-281 255-483 (606)
40 3o6n_A APL1; leucine-rich repe 99.9 6.7E-24 2.3E-28 186.0 18.0 199 81-282 69-326 (390)
41 3oja_B Anopheles plasmodium-re 99.9 5.2E-24 1.8E-28 196.6 17.6 200 81-283 75-333 (597)
42 4eco_A Uncharacterized protein 99.9 1.4E-25 4.6E-30 208.5 6.8 186 81-271 206-423 (636)
43 2o6s_A Variable lymphocyte rec 99.9 5.5E-24 1.9E-28 170.6 14.3 187 67-276 5-191 (208)
44 1p9a_G Platelet glycoprotein I 99.9 1E-23 3.4E-28 177.7 16.4 194 81-282 10-203 (290)
45 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-24 5.9E-29 200.1 12.4 199 81-282 350-553 (606)
46 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-23 4.6E-28 196.6 18.5 201 81-282 25-280 (680)
47 3vq2_A TLR4, TOLL-like recepto 99.9 4.8E-24 1.6E-28 197.1 14.9 199 81-281 32-236 (606)
48 2z62_A TOLL-like receptor 4, v 99.9 8.5E-24 2.9E-28 176.8 14.4 186 80-267 51-241 (276)
49 3j0a_A TOLL-like receptor 5; m 99.9 8.2E-24 2.8E-28 202.5 15.4 134 81-214 24-160 (844)
50 1ziw_A TOLL-like receptor 3; i 99.9 2.8E-23 9.6E-28 194.4 18.0 200 82-282 382-617 (680)
51 2z7x_B TOLL-like receptor 1, v 99.9 2.3E-23 7.8E-28 189.2 16.1 83 81-166 45-128 (520)
52 4ecn_A Leucine-rich repeat pro 99.9 2.7E-24 9.4E-29 204.4 10.3 181 81-267 448-661 (876)
53 3m19_A Variable lymphocyte rec 99.9 3.5E-23 1.2E-27 170.8 15.3 175 105-283 14-188 (251)
54 3oja_A Leucine-rich immune mol 99.9 8E-24 2.7E-28 190.7 12.3 194 81-281 34-244 (487)
55 4glp_A Monocyte differentiatio 99.9 3.5E-24 1.2E-28 182.2 9.3 196 81-282 91-302 (310)
56 1h6u_A Internalin H; cell adhe 99.9 1.3E-22 4.5E-27 172.3 18.9 183 82-281 42-224 (308)
57 2o6s_A Variable lymphocyte rec 99.9 3.6E-23 1.2E-27 165.8 14.2 177 81-269 28-204 (208)
58 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-24 7.1E-29 184.2 7.1 195 81-281 58-269 (317)
59 2ft3_A Biglycan; proteoglycan, 99.9 4.2E-23 1.4E-27 177.1 15.3 195 82-283 34-250 (332)
60 2z63_A TOLL-like receptor 4, v 99.9 7.8E-24 2.7E-28 194.1 11.1 197 83-282 327-526 (570)
61 1wwl_A Monocyte differentiatio 99.9 6.1E-24 2.1E-28 180.8 9.6 180 80-265 120-311 (312)
62 3j0a_A TOLL-like receptor 5; m 99.9 3.6E-23 1.2E-27 198.1 15.0 87 81-167 73-162 (844)
63 2z7x_B TOLL-like receptor 1, v 99.9 1E-22 3.4E-27 185.0 16.7 105 81-189 21-126 (520)
64 2z63_A TOLL-like receptor 4, v 99.9 3.7E-23 1.3E-27 189.6 13.5 178 81-260 28-210 (570)
65 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9E-23 3.1E-27 187.1 14.5 107 81-191 52-159 (562)
66 2z81_A CD282 antigen, TOLL-lik 99.9 2.7E-22 9.4E-27 183.2 15.3 194 86-283 10-205 (549)
67 4fmz_A Internalin; leucine ric 99.9 1E-21 3.6E-26 169.3 18.1 190 81-282 132-341 (347)
68 2xwt_C Thyrotropin receptor; s 99.9 2.4E-22 8.4E-27 164.4 12.7 180 96-282 25-213 (239)
69 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.9E-22 9.7E-27 183.7 13.4 162 102-266 350-513 (562)
70 3oja_A Leucine-rich immune mol 99.9 8.4E-23 2.9E-27 184.0 9.2 195 81-281 58-269 (487)
71 3e6j_A Variable lymphocyte rec 99.9 2.6E-21 8.8E-26 157.4 16.1 164 62-242 12-175 (229)
72 1o6v_A Internalin A; bacterial 99.9 3.3E-21 1.1E-25 172.8 18.1 185 81-282 199-383 (466)
73 1h6u_A Internalin H; cell adhe 99.9 2.9E-21 9.8E-26 164.0 16.6 171 81-266 63-233 (308)
74 2ast_B S-phase kinase-associat 99.9 6.3E-23 2.1E-27 176.1 6.1 200 81-282 70-280 (336)
75 4fmz_A Internalin; leucine ric 99.9 1.1E-20 3.6E-25 163.0 19.8 193 79-283 108-320 (347)
76 4glp_A Monocyte differentiatio 99.9 4E-22 1.4E-26 169.4 10.4 180 80-265 116-309 (310)
77 2xot_A Amphoterin-induced prot 99.9 1.5E-21 5.1E-26 169.4 14.0 176 85-264 22-203 (361)
78 3o53_A Protein LRIM1, AGAP0063 99.9 3.9E-22 1.3E-26 170.0 9.2 195 81-282 34-245 (317)
79 4g8a_A TOLL-like receptor 4; l 99.9 1.9E-21 6.3E-26 180.1 14.0 197 81-279 52-254 (635)
80 3cvr_A Invasion plasmid antige 99.9 1.5E-21 5E-26 178.1 12.4 168 82-275 81-255 (571)
81 2v70_A SLIT-2, SLIT homolog 2 99.9 4.6E-21 1.6E-25 154.9 14.0 155 85-243 15-170 (220)
82 2v9t_B SLIT homolog 2 protein 99.9 5.7E-21 2E-25 154.4 14.4 151 86-240 16-166 (220)
83 1h6t_A Internalin B; cell adhe 99.9 4.9E-21 1.7E-25 161.3 14.5 175 81-270 46-220 (291)
84 3e6j_A Variable lymphocyte rec 99.9 1E-20 3.4E-25 153.9 15.7 156 107-267 21-176 (229)
85 1o6v_A Internalin A; bacterial 99.9 1.9E-20 6.4E-25 167.9 18.6 186 81-283 177-362 (466)
86 4ay9_X Follicle-stimulating ho 99.9 1.5E-21 5E-26 168.8 10.9 212 67-280 7-232 (350)
87 2ca6_A RAN GTPase-activating p 99.9 3E-22 1E-26 175.3 6.7 202 81-282 60-311 (386)
88 2v9t_B SLIT homolog 2 protein 99.9 8E-21 2.7E-25 153.5 14.3 153 108-264 14-166 (220)
89 4g8a_A TOLL-like receptor 4; l 99.9 6.3E-21 2.2E-25 176.6 15.4 182 87-272 37-223 (635)
90 2ast_B S-phase kinase-associat 99.9 6.1E-23 2.1E-27 176.2 1.4 210 67-283 35-256 (336)
91 2v70_A SLIT-2, SLIT homolog 2 99.8 3.1E-20 1.1E-24 150.0 15.4 154 108-265 14-168 (220)
92 3goz_A Leucine-rich repeat-con 99.8 8.6E-22 3E-26 171.0 6.3 202 81-282 22-261 (362)
93 2ca6_A RAN GTPase-activating p 99.8 4.4E-22 1.5E-26 174.2 4.4 203 81-283 32-283 (386)
94 3cvr_A Invasion plasmid antige 99.8 2.1E-20 7.3E-25 170.4 15.4 191 62-283 36-239 (571)
95 1h6t_A Internalin B; cell adhe 99.8 3.7E-20 1.3E-24 155.9 15.9 179 88-283 31-209 (291)
96 2xot_A Amphoterin-induced prot 99.8 2.4E-20 8.2E-25 161.8 14.4 170 108-281 21-196 (361)
97 1m9s_A Internalin B; cell inva 99.8 2E-20 6.7E-25 172.2 14.0 178 81-273 43-220 (605)
98 3bz5_A Internalin-J, INLJ; leu 99.8 9.3E-20 3.2E-24 162.8 16.9 170 81-269 64-252 (457)
99 4ezg_A Putative uncharacterize 99.8 2.7E-20 9.4E-25 147.8 11.9 154 102-264 41-195 (197)
100 3goz_A Leucine-rich repeat-con 99.8 7.7E-21 2.6E-25 165.0 7.8 199 85-283 2-234 (362)
101 3bz5_A Internalin-J, INLJ; leu 99.8 2.2E-19 7.4E-24 160.4 17.0 178 81-282 42-241 (457)
102 1xeu_A Internalin C; cellular 99.8 2.3E-20 7.8E-25 154.9 9.4 167 84-266 22-188 (263)
103 4b8c_D Glucose-repressible alc 99.8 1.8E-21 6E-26 183.1 2.2 228 35-272 129-363 (727)
104 1m9s_A Internalin B; cell inva 99.8 2.1E-19 7.1E-24 165.3 14.2 181 86-283 26-206 (605)
105 4ezg_A Putative uncharacterize 99.8 7.8E-19 2.7E-23 139.3 14.3 150 125-283 40-190 (197)
106 1w8a_A SLIT protein; signaling 99.8 7.3E-19 2.5E-23 138.9 11.8 132 108-243 11-143 (192)
107 1z7x_W Ribonuclease inhibitor; 99.8 1.4E-20 4.7E-25 168.2 1.7 80 203-282 314-406 (461)
108 1dce_A Protein (RAB geranylger 99.8 8E-22 2.7E-26 180.3 -6.9 121 154-280 442-566 (567)
109 1z7x_W Ribonuclease inhibitor; 99.8 1.9E-20 6.4E-25 167.4 1.7 69 198-266 337-414 (461)
110 4b8c_D Glucose-repressible alc 99.8 1.5E-19 5.2E-24 169.9 6.7 162 87-260 207-369 (727)
111 1xeu_A Internalin C; cellular 99.8 1.1E-18 3.7E-23 144.8 10.1 165 103-283 17-181 (263)
112 3g06_A SSPH2 (leucine-rich rep 99.8 5.5E-18 1.9E-22 156.2 15.5 90 178-276 221-310 (622)
113 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-17 5.1E-22 153.3 17.9 73 202-283 221-293 (622)
114 1jl5_A Outer protein YOPM; leu 99.8 1.5E-19 5.1E-24 161.3 4.5 166 81-264 11-209 (454)
115 1jl5_A Outer protein YOPM; leu 99.8 8.4E-18 2.9E-22 150.0 15.7 161 81-264 131-291 (454)
116 4ay9_X Follicle-stimulating ho 99.8 5.8E-18 2E-22 146.2 13.6 194 85-283 13-211 (350)
117 2ell_A Acidic leucine-rich nuc 99.8 3.7E-18 1.3E-22 131.8 10.2 132 105-263 24-160 (168)
118 2ell_A Acidic leucine-rich nuc 99.8 8.4E-18 2.9E-22 129.8 11.9 132 81-215 24-160 (168)
119 1w8a_A SLIT protein; signaling 99.7 1.4E-17 4.9E-22 131.5 12.4 131 85-219 12-143 (192)
120 2o6r_A Variable lymphocyte rec 99.7 2.6E-17 8.8E-22 128.2 13.4 131 108-242 10-140 (177)
121 2wfh_A SLIT homolog 2 protein 99.7 2.9E-17 1E-21 129.8 13.1 127 108-239 13-139 (193)
122 2je0_A Acidic leucine-rich nuc 99.7 5.4E-18 1.9E-22 128.3 8.1 126 130-258 18-148 (149)
123 2je0_A Acidic leucine-rich nuc 99.7 1.1E-17 3.8E-22 126.5 9.1 128 152-282 16-148 (149)
124 2o6r_A Variable lymphocyte rec 99.7 1.1E-16 3.8E-21 124.6 13.4 128 88-219 14-141 (177)
125 2wfh_A SLIT homolog 2 protein 99.7 1.5E-16 5.3E-21 125.6 12.1 127 85-216 14-140 (193)
126 1ds9_A Outer arm dynein; leuci 99.7 3.1E-19 1.1E-23 141.7 -4.7 156 101-264 14-186 (198)
127 3sb4_A Hypothetical leucine ri 99.7 4.6E-17 1.6E-21 139.3 8.4 199 81-282 49-329 (329)
128 1dce_A Protein (RAB geranylger 99.7 8.7E-20 3E-24 166.8 -9.2 174 102-282 346-541 (567)
129 1a9n_A U2A', U2A'; complex (nu 99.7 2E-16 6.8E-21 123.1 9.5 109 101-215 15-126 (176)
130 1ds9_A Outer arm dynein; leuci 99.7 1.6E-18 5.4E-23 137.7 -2.9 151 124-280 13-180 (198)
131 1a9n_A U2A', U2A'; complex (nu 99.7 1.6E-16 5.3E-21 123.7 7.6 135 124-265 14-155 (176)
132 3ogk_B Coronatine-insensitive 99.6 1.1E-16 3.6E-21 147.4 3.5 203 81-283 293-522 (592)
133 3g39_A Variable lymphocyte rec 99.6 3E-15 1E-19 115.7 10.3 104 132-239 12-115 (170)
134 2r9u_A Variable lymphocyte rec 99.6 8.9E-15 3E-19 113.5 10.5 104 132-239 15-118 (174)
135 3un9_A NLR family member X1; l 99.6 3E-16 1E-20 136.3 0.8 97 177-273 154-262 (372)
136 2p1m_B Transport inhibitor res 99.6 6.7E-16 2.3E-20 142.0 1.9 201 81-283 289-515 (594)
137 3ogk_B Coronatine-insensitive 99.6 3.8E-15 1.3E-19 137.0 6.9 62 81-142 164-233 (592)
138 3g39_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 109.3 11.4 102 85-190 13-114 (170)
139 2r9u_A Variable lymphocyte rec 99.5 7.6E-14 2.6E-18 108.2 11.4 103 85-191 16-118 (174)
140 3un9_A NLR family member X1; l 99.5 4.7E-16 1.6E-20 135.1 -2.6 187 81-268 72-288 (372)
141 2p1m_B Transport inhibitor res 99.5 7.1E-15 2.4E-19 135.2 3.1 199 81-281 105-345 (594)
142 3sb4_A Hypothetical leucine ri 99.5 1E-13 3.5E-18 118.5 9.8 173 81-257 101-328 (329)
143 4fdw_A Leucine rich hypothetic 99.4 3.1E-12 1.1E-16 112.1 14.0 192 83-281 159-377 (401)
144 2ifg_A High affinity nerve gro 99.4 8.6E-13 2.9E-17 113.4 9.3 104 133-240 12-117 (347)
145 4fdw_A Leucine rich hypothetic 99.4 6.2E-12 2.1E-16 110.2 13.8 177 81-263 180-383 (401)
146 2ifg_A High affinity nerve gro 99.4 3.5E-12 1.2E-16 109.6 11.0 101 88-192 15-117 (347)
147 2ra8_A Uncharacterized protein 99.2 2.1E-11 7.1E-16 105.2 9.2 189 81-272 107-329 (362)
148 2ra8_A Uncharacterized protein 99.0 4.6E-10 1.6E-14 96.7 5.7 176 81-261 139-341 (362)
149 3rw6_A Nuclear RNA export fact 98.8 1.5E-11 5.2E-16 101.1 -7.9 79 176-256 168-257 (267)
150 1io0_A Tropomodulin; LRR prote 98.8 2E-09 6.9E-14 83.9 2.7 66 199-264 90-165 (185)
151 3rw6_A Nuclear RNA export fact 98.6 3.4E-09 1.2E-13 87.1 0.4 82 199-282 167-259 (267)
152 1io0_A Tropomodulin; LRR prote 98.6 2E-08 6.7E-13 78.3 4.3 109 175-283 33-160 (185)
153 4fs7_A Uncharacterized protein 98.5 8.4E-07 2.9E-11 77.3 11.8 174 81-259 162-375 (394)
154 4fs7_A Uncharacterized protein 98.4 2.6E-06 9E-11 74.2 11.5 123 124-255 271-393 (394)
155 4gt6_A Cell surface protein; l 98.4 4.9E-06 1.7E-10 72.4 13.1 60 220-281 305-364 (394)
156 3e4g_A ATP synthase subunit S, 98.4 2.9E-07 1E-11 70.4 4.6 86 179-264 62-154 (176)
157 3e4g_A ATP synthase subunit S, 98.4 4.6E-07 1.6E-11 69.4 5.6 90 195-284 54-149 (176)
158 4gt6_A Cell surface protein; l 98.3 6.1E-06 2.1E-10 71.8 12.9 82 198-282 261-342 (394)
159 4h09_A Hypothetical leucine ri 98.3 8.7E-06 3E-10 70.4 12.6 144 125-274 213-356 (379)
160 4h09_A Hypothetical leucine ri 98.2 1.5E-05 5.1E-10 68.9 12.8 149 98-252 210-358 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 1.7E-05 5.8E-10 61.8 3.1 87 177-263 69-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 4.3E-05 1.5E-09 59.5 4.6 108 175-282 38-165 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00048 1.6E-08 49.9 5.4 56 182-239 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0019 6.5E-08 46.7 5.2 35 155-190 33-67 (130)
165 2lz0_A Uncharacterized protein 63.7 25 0.00087 23.3 6.3 45 93-138 8-52 (100)
166 2lz0_A Uncharacterized protein 62.3 13 0.00045 24.8 4.7 46 116-162 7-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.3e-37 Score=262.37 Aligned_cols=244 Identities=31% Similarity=0.518 Sum_probs=192.3
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCccccCCCCCCCCCCC--ceeeEecCCC--CcEEEEEeCCCCCcc--cCchhccCCCCC
Q 023193 34 STTTADQDGLLALKAHITHDPTNFLAKNWNTRTLVCN--WTGVTCDVHS--HRVTILNISRLNLTG--TIPSQLGNLSSL 107 (286)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~--~~g~~c~~~~--~~l~~l~l~~~~i~~--~~~~~~~~l~~L 107 (286)
.|.+.|..++.+||+.+. +|. .+.+ |..+.++|. |.||.|+... .+|+.|+++++.+.+ .+|+.+.++++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 478899999999999994 665 5666 988888998 9999998654 789999999999998 899999999999
Q ss_pred CEEEccc-CCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeee
Q 023193 108 QSLDLSF-NQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLS 186 (286)
Q Consensus 108 ~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~ 186 (286)
++|++++ |.+.+.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.+|..+ ..+++|++|+++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~ 157 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFD 157 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECC
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECc
Confidence 9999995 88888888889999999999999998888888888888888888888888876677666 678888888888
Q ss_pred ccccCCCCCccCcCCC-CcceEecccCCCccccchh-----------------------hcCCcccceeecccccCCCCc
Q 023193 187 QNMFHGGIPSTLSNCT-YLQKLSLPYNDFSGAIPKE-----------------------IGNLNKLKRLYLGRNRLQGEI 242 (286)
Q Consensus 187 ~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~~~~-----------------------~~~l~~L~~L~L~~n~l~~~~ 242 (286)
+|.+++.+|..++.++ +|++|++++|.+++.+|.. +..+++|++|++++|.+++.+
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 8888777777777776 6777777777666555444 444555555555555555444
Q ss_pred hhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 243 PQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 243 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
|. +..+++|++|++++|++++.+|..+..+++++.+++.
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 43 5566777777777777777788888888877777764
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.2e-34 Score=246.09 Aligned_cols=245 Identities=19% Similarity=0.251 Sum_probs=158.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCccccCCC----CCCCCCCCceeeEec--------CCCCcEEEEEeCCCCCcccCch
Q 023193 32 NTSTTTADQDGLLALKAHITHDPTNFLAKNW----NTRTLVCNWTGVTCD--------VHSHRVTILNISRLNLTGTIPS 99 (286)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w----~~~~~~c~~~g~~c~--------~~~~~l~~l~l~~~~i~~~~~~ 99 (286)
..+....+..++.+||..+..++..+... | .....+|.|.|+.|. ....+++.|+++++.++ .+|+
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 34456688999999999987788878777 8 556789999999984 22356777777777776 5666
Q ss_pred hccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhh------
Q 023193 100 QLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANI------ 173 (286)
Q Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~------ 173 (286)
.+.++++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 6666677777777777666 56666666666666666666666 555556556666666665554444444332
Q ss_pred -------------------------hcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCccc
Q 023193 174 -------------------------CSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKL 228 (286)
Q Consensus 174 -------------------------~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 228 (286)
+..+++|++|++++|.++ .+|..++.+++|++|++++|++.+.+|..++.+++|
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp CCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 144555555555555555 344445555666666666666665666666666666
Q ss_pred ceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceee
Q 023193 229 KRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCI 281 (286)
Q Consensus 229 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l 281 (286)
++|++++|.+.+.+|..+..+++|++|++++|++.+.+|+.+.+++++..+.+
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 66666666666666666666666666666666666666666666666665544
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-33 Score=266.12 Aligned_cols=240 Identities=27% Similarity=0.416 Sum_probs=188.7
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCccccCCCCCCCCCCCceeeEecCCCCcEEEEEeCCCCCccc---Cc-----------
Q 023193 33 TSTTTADQDGLLALKAHITHDPTNFLAKNWNTRTLVCNWTGVTCDVHSHRVTILNISRLNLTGT---IP----------- 98 (286)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~c~~~~~~l~~l~l~~~~i~~~---~~----------- 98 (286)
++..+.|..|+.+||+.+. ||. .+.+ |..+.+||.|.||.|+ .++|+.++++++.+.|. +|
T Consensus 7 ~~~~~~~~~all~~k~~~~-~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLP-DKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCS-CTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccCCHHHHHHHHHHHhhCC-Ccc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 3446789999999999996 776 6776 9888899999999998 48999999999998876 44
Q ss_pred ------------hhccCCCCCCEEEcccCCCCccCch--hhhcCCCCcEEEccCCCCCccCCccc-cCCCCCCEEEeecC
Q 023193 99 ------------SQLGNLSSLQSLDLSFNQLSGSIPS--AIFGTYTLKYVNFRENQLSGAFPSLI-FNKSSLQLLDFAHN 163 (286)
Q Consensus 99 ------------~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~L~~n 163 (286)
..++.+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..|..+ .++++|++|++++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 3566777788888888877777776 77778888888888887777766655 67778888888888
Q ss_pred CCCCCCchhh--hcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCC
Q 023193 164 TLSDEIPANI--CSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGE 241 (286)
Q Consensus 164 ~l~~~l~~~~--~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 241 (286)
.+++..+..+ +..+++|++|++++|.+++..|. ..+++|++|++++|.+++.+|. ++.+++|++|++++|.+++.
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 8875555442 36778888888888888765543 6778888888888888876666 78888888888888888888
Q ss_pred chhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 242 IPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 242 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
+|..++.+++|++|++++|.+++.+|.. .+++++.+++.
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~ 277 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECC
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECc
Confidence 8888888888888888888888877765 67777777654
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-33 Score=261.69 Aligned_cols=242 Identities=19% Similarity=0.299 Sum_probs=208.6
Q ss_pred CCHHhHHHHHHHHHhcCCCCCcccc------CCCCCCCCCCCc---eeeEecCCCCcEEEEEeCCCCCcccCchhccCCC
Q 023193 35 TTTADQDGLLALKAHITHDPTNFLA------KNWNTRTLVCNW---TGVTCDVHSHRVTILNISRLNLTGTIPSQLGNLS 105 (286)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~------~~w~~~~~~c~~---~g~~c~~~~~~l~~l~l~~~~i~~~~~~~~~~l~ 105 (286)
....|..|+.+++.++.++.+.+.. .+|....++|.| .||.|+.. ++|+.|+++++++.|.+|+++++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 3457899999999998544333222 149998999999 99999875 8999999999999999999999999
Q ss_pred CCCEEEcccCCC--------------------------------------------------------------------
Q 023193 106 SLQSLDLSFNQL-------------------------------------------------------------------- 117 (286)
Q Consensus 106 ~L~~L~l~~n~l-------------------------------------------------------------------- 117 (286)
+|++|++++|.+
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 999999998843
Q ss_pred ----------CccCchhhhcCCCCcEEEccCCCCCcc-----------------CCcccc--CCCCCCEEEeecCCCCCC
Q 023193 118 ----------SGSIPSAIFGTYTLKYVNFRENQLSGA-----------------FPSLIF--NKSSLQLLDFAHNTLSDE 168 (286)
Q Consensus 118 ----------~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~ 168 (286)
++ +|..+..+++|++|++++|.+++. +|..+. ++++|++|++++|.+.+.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 23 778899999999999999999985 899988 999999999999999888
Q ss_pred CchhhhcCCCCccEeeeeccc-cCC-CCCccCcCC------CCcceEecccCCCccccch--hhcCCcccceeecccccC
Q 023193 169 IPANICSNLPFLEILSLSQNM-FHG-GIPSTLSNC------TYLQKLSLPYNDFSGAIPK--EIGNLNKLKRLYLGRNRL 238 (286)
Q Consensus 169 l~~~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~~------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l 238 (286)
+|..+ +.+++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .++.+++|++|++++|.+
T Consensus 265 ~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 265 LPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp CCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred ChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence 88777 789999999999998 887 788877776 89999999999998 7787 889999999999999999
Q ss_pred CCCchhhhcCCCCCCEEecccCcccccchHHHhhccC-CCceeee
Q 023193 239 QGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSS-SACFCIR 282 (286)
Q Consensus 239 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-l~~l~l~ 282 (286)
+|.+| .++.+++|+.|++++|+++ .+|..+..+++ |+.+++.
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECC
T ss_pred ccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEcc
Confidence 98888 8888888999999999888 77888888888 8877664
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=6.5e-32 Score=256.64 Aligned_cols=238 Identities=20% Similarity=0.332 Sum_probs=204.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCccccCCCCCCC-----CC--CCc------------eeeEecCCCCcEEEEEeCCCCC
Q 023193 33 TSTTTADQDGLLALKAHITHDPTNFLAKNWNTRT-----LV--CNW------------TGVTCDVHSHRVTILNISRLNL 93 (286)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~g~~c~~~~~~l~~l~l~~~~i 93 (286)
++....|..||.+||.++. +| . |..+. ++ |.| .||.|+.. .+|+.|+|+++++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~-~~-~-----W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD-GK-N-----WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGA 335 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT-GG-G-----CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCC
T ss_pred cccchHHHHHHHHHHHHcC-CC-C-----CCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCC
Confidence 3445679999999999994 55 2 64433 44 999 99999874 8999999999999
Q ss_pred cccCchhccCCCCCCEEEc-ccCCCCcc----------------------------------------------------
Q 023193 94 TGTIPSQLGNLSSLQSLDL-SFNQLSGS---------------------------------------------------- 120 (286)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l-~~n~l~~~---------------------------------------------------- 120 (286)
.|.+|++++++++|+.|++ ++|.+.|.
T Consensus 336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 9999999999999999999 66644322
Q ss_pred ------------------------CchhhhcCCCCcEEEccCCCCCc-----------------cCCcccc--CCCCCCE
Q 023193 121 ------------------------IPSAIFGTYTLKYVNFRENQLSG-----------------AFPSLIF--NKSSLQL 157 (286)
Q Consensus 121 ------------------------~~~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~ 157 (286)
+|..+..+++|++|++++|.+++ .+|..++ ++++|++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 78889999999999999999998 3888887 9999999
Q ss_pred EEeecCCCCCCCchhhhcCCCCccEeeeeccc-cCC-CCCccCcCCC-------CcceEecccCCCccccch--hhcCCc
Q 023193 158 LDFAHNTLSDEIPANICSNLPFLEILSLSQNM-FHG-GIPSTLSNCT-------YLQKLSLPYNDFSGAIPK--EIGNLN 226 (286)
Q Consensus 158 L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~~~-------~L~~L~l~~n~l~~~~~~--~~~~l~ 226 (286)
|++++|.+.+.+|..+ ..+++|++|++++|+ +++ .+|..++.++ +|++|++++|+++ .+|. .++.++
T Consensus 496 L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp EEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred EECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence 9999999988999777 889999999999998 887 7787665554 9999999999999 7787 899999
Q ss_pred ccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccC-CCceeeee
Q 023193 227 KLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSS-SACFCIRS 283 (286)
Q Consensus 227 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-l~~l~l~~ 283 (286)
+|++|+|++|.++ .+| .++.+++|+.|++++|+++ .+|..+..+++ |+.+++..
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCS
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcC
Confidence 9999999999998 777 8888999999999999998 88888888888 88877653
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=4.5e-29 Score=236.66 Aligned_cols=202 Identities=34% Similarity=0.546 Sum_probs=148.7
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
..++.|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 44556666666666666666666666666666666666666666667777777777777777677777777777777777
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccC------------------------------------------
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTL------------------------------------------ 198 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~------------------------------------------ 198 (286)
++|.+++.+|..+ +.+++|++|++++|.++|.+|..+
T Consensus 522 ~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 522 SNNSFSGNIPAEL-GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CSSCCEEECCGGG-GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CCCcccCcCCHHH-cCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 7777766666665 667777777777777665555432
Q ss_pred ----------------------------cCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCC
Q 023193 199 ----------------------------SNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLA 250 (286)
Q Consensus 199 ----------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 250 (286)
+.+++|+.|++++|+++|.+|..++.++.|++|+|++|.++|.+|..++.++
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 2345677888888888888888888888888888888888888888888888
Q ss_pred CCCEEecccCcccccchHHHhhccCCCceeeee
Q 023193 251 ELEQMSLSENKLQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 251 ~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
+|+.||+++|+++|.+|..++.++.|+.+++..
T Consensus 681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 888888888888888888888888888877653
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1e-29 Score=216.67 Aligned_cols=199 Identities=27% Similarity=0.370 Sum_probs=153.5
Q ss_pred CcEEEEEeCC-CCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEE
Q 023193 81 HRVTILNISR-LNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLD 159 (286)
Q Consensus 81 ~~l~~l~l~~-~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 159 (286)
.+++.|++++ |.+.+.+|..|+++++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 5677777774 777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred eecCCCCCCCchhhhcCCC-CccEeeeecccc-----------------------CCCCCccCcCCCCcceEecccCCCc
Q 023193 160 FAHNTLSDEIPANICSNLP-FLEILSLSQNMF-----------------------HGGIPSTLSNCTYLQKLSLPYNDFS 215 (286)
Q Consensus 160 L~~n~l~~~l~~~~~~~l~-~L~~L~l~~n~l-----------------------~~~~p~~~~~~~~L~~L~l~~n~l~ 215 (286)
+++|.+++.+|..+ ..++ +|++|++++|.+ ++..|..+..+++|++|++++|.++
T Consensus 156 L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 156 FDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred CcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 77777765666555 3444 555555555544 4456666777888888888888888
Q ss_pred cccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 216 GAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 216 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
+.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|+++|.+|.. ..+++++.+++.
T Consensus 235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~ 299 (313)
T 1ogq_A 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA 299 (313)
T ss_dssp CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTC
T ss_pred eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhc
Confidence 66655 788899999999999999999999999999999999999999999987 778888776653
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-28 Score=205.91 Aligned_cols=210 Identities=24% Similarity=0.326 Sum_probs=116.6
Q ss_pred CCCCceeeEecCCCCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCC
Q 023193 67 LVCNWTGVTCDVHSHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFP 146 (286)
Q Consensus 67 ~~c~~~g~~c~~~~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 146 (286)
+.|.|.|+.|... ...+.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.++...+
T Consensus 3 ~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 3 ALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred ccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 4577777666432 23345556665555 2443332 355566666666554444455556666666666666554444
Q ss_pred ccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCc
Q 023193 147 SLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLN 226 (286)
Q Consensus 147 ~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 226 (286)
..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 44455566666666666655 44444445555666666666665555455555556666666666665544444455555
Q ss_pred ccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceee
Q 023193 227 KLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCI 281 (286)
Q Consensus 227 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l 281 (286)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++++.+++
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 6666666666665555555555566666666666665555555555555555544
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1e-28 Score=211.79 Aligned_cols=181 Identities=19% Similarity=0.257 Sum_probs=157.2
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhc---------CCCCcEEEccCCCCCccCCccccC
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFG---------TYTLKYVNFRENQLSGAFPSLIFN 151 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~p~~~~~ 151 (286)
.+++.|++++|.+. .+|..++++++|++|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..+..
T Consensus 127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~ 204 (328)
T 4fcg_A 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204 (328)
T ss_dssp TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG
T ss_pred CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC
Confidence 55777777777777 66777777888888888877777677766543 788888888888887 77888889
Q ss_pred CCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCccccee
Q 023193 152 KSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRL 231 (286)
Q Consensus 152 l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 231 (286)
+++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+.+|..++.+++|++|++++|++.+.+|..+..+++|++|
T Consensus 205 l~~L~~L~L~~N~l~-~l~~~l-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLS-ALGPAI-HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp CTTCCEEEEESSCCC-CCCGGG-GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred CCCCCEEEccCCCCC-cCchhh-ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 999999999999998 577765 789999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCCchhhhcCCCCCCEEecccCccccc
Q 023193 232 YLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265 (286)
Q Consensus 232 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 265 (286)
++++|.+.+.+|..++.+++|+.+++..+.+...
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred eCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 9999999999999999999999999998876543
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4e-28 Score=204.09 Aligned_cols=202 Identities=20% Similarity=0.225 Sum_probs=178.5
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCC-CCccCCccccCCCCCCEEE
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQ-LSGAFPSLIFNKSSLQLLD 159 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ 159 (286)
..++.|+++++.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|. ++...|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 578899999999998777889999999999999999988778899999999999999997 7777788899999999999
Q ss_pred eecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCC
Q 023193 160 FAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQ 239 (286)
Q Consensus 160 L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 239 (286)
+++|.++ .++...+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 112 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 9999998 454444588999999999999998777777889999999999999999776677888999999999999999
Q ss_pred CCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeeee
Q 023193 240 GEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 240 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
+..|..+..+++|+.|++++|++++..+..++.+++++.+++..
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence 88899999999999999999999998888899999998887753
No 11
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=9.1e-28 Score=207.95 Aligned_cols=184 Identities=21% Similarity=0.223 Sum_probs=148.8
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+++..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 46888999999888766668888999999999999888777778888899999999999888655555888889999999
Q ss_pred ecCCCCCCCch-hhhcCCCCccEeeeecc-ccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccC
Q 023193 161 AHNTLSDEIPA-NICSNLPFLEILSLSQN-MFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238 (286)
Q Consensus 161 ~~n~l~~~l~~-~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 238 (286)
++|.++ .+|. ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 999887 5666 45578888999999888 46656667788888899999999888887788888888888888888888
Q ss_pred CCCchhhhcCCCCCCEEecccCccccc
Q 023193 239 QGEIPQEFGNLAELEQMSLSENKLQGM 265 (286)
Q Consensus 239 ~~~~~~~~~~l~~L~~L~l~~n~l~~~ 265 (286)
+...+..+..+++|+.|++++|++++.
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred ccchhhhhhhcccccEEECCCCccccc
Confidence 744444455678888888888887763
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-27 Score=203.18 Aligned_cols=214 Identities=24% Similarity=0.319 Sum_probs=125.7
Q ss_pred CCCCceeeEecCC---------CCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCcc--CchhhhcCCCCcEEE
Q 023193 67 LVCNWTGVTCDVH---------SHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGS--IPSAIFGTYTLKYVN 135 (286)
Q Consensus 67 ~~c~~~g~~c~~~---------~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ 135 (286)
+.|.|.++.|... ..+++.|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|+
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 4578888888642 14688899999998855555578888999999998888732 355566666677777
Q ss_pred ccCCCCCccCCccccCCCCCCEEEeecCCCCCC------------------------CchhhhcCCCCccEeeeeccccC
Q 023193 136 FRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDE------------------------IPANICSNLPFLEILSLSQNMFH 191 (286)
Q Consensus 136 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~------------------------l~~~~~~~l~~L~~L~l~~n~l~ 191 (286)
+++|.++ .+|..+..+++|++|++++|.+++. .+...+..+++|++|++++|.++
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 7666665 3444455555555555555555421 11222244455555555555554
Q ss_pred C-CCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHH
Q 023193 192 G-GIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFL 270 (286)
Q Consensus 192 ~-~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 270 (286)
+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 3 344455555555555555555555445555555555555555555555444455555556666666666655555555
Q ss_pred hhcc-CCCceee
Q 023193 271 QFYS-SSACFCI 281 (286)
Q Consensus 271 ~~l~-~l~~l~l 281 (286)
..++ +++.+++
T Consensus 244 ~~~~~~L~~L~L 255 (306)
T 2z66_A 244 QHFPSSLAFLNL 255 (306)
T ss_dssp CCCCTTCCEEEC
T ss_pred HhhhccCCEEEc
Confidence 5552 4554443
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.95 E-value=1.1e-26 Score=191.84 Aligned_cols=192 Identities=23% Similarity=0.312 Sum_probs=170.2
Q ss_pred CCCCceeeEecCCCCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCC
Q 023193 67 LVCNWTGVTCDVHSHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFP 146 (286)
Q Consensus 67 ~~c~~~g~~c~~~~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 146 (286)
.|+.|.|..|.. ..+.++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 356788889953 3457899999988 5665554 689999999999998888889999999999999999998888
Q ss_pred ccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCc
Q 023193 147 SLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLN 226 (286)
Q Consensus 147 ~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 226 (286)
..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence 88999999999999999998 67776668999999999999999977777789999999999999999977777899999
Q ss_pred ccceeecccccCCCCchhhhcCCCCCCEEecccCccccc
Q 023193 227 KLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265 (286)
Q Consensus 227 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 265 (286)
+|++|+|++|.+++..+..+..+++|+.|++++|++++.
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999999999999988888999999999999999999876
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.3e-26 Score=205.62 Aligned_cols=199 Identities=21% Similarity=0.249 Sum_probs=142.0
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 56888999999998888888889999999999999888777788888888999999999888766677888888888888
Q ss_pred ecCCCCCCCchhhhcCCCCccEeee-------------------------eccccCCCCCccCcCCCCcceEecccCCCc
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSL-------------------------SQNMFHGGIPSTLSNCTYLQKLSLPYNDFS 215 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l-------------------------~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 215 (286)
++|.++ .++...+..+++|++|++ ++|.+++ +| .+..+++|++|++++|.++
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc
Confidence 888886 555544444555555555 4444442 22 2445556666666666666
Q ss_pred cccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 216 GAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 216 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
+..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++++.+++.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 6556666666666666666666666666666666677777777777766666666666666666553
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=6e-26 Score=189.35 Aligned_cols=203 Identities=22% Similarity=0.248 Sum_probs=174.9
Q ss_pred CCCCCCCC--CceeeEecCC---------CCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCC
Q 023193 62 WNTRTLVC--NWTGVTCDVH---------SHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYT 130 (286)
Q Consensus 62 w~~~~~~c--~~~g~~c~~~---------~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 130 (286)
|....+.| .+..+.|... ...++.|++++|.+++..+..|.++++|++|++++|.+....+..|..+++
T Consensus 7 ~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 7 KDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86 (270)
T ss_dssp GGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred CCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence 54444334 3555666521 246899999999999877778999999999999999998666666788999
Q ss_pred CcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecc
Q 023193 131 LKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLP 210 (286)
Q Consensus 131 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~ 210 (286)
|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 999999999999777778899999999999999998 5666666899999999999999997766778999999999999
Q ss_pred cCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCccccc
Q 023193 211 YNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265 (286)
Q Consensus 211 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 265 (286)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 9999987777889999999999999999987778899999999999999998654
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.7e-26 Score=203.56 Aligned_cols=200 Identities=21% Similarity=0.246 Sum_probs=130.8
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
..++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|++++..+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34556666666666555566666666666666666666555556666666666666666666444445556666666666
Q ss_pred ecCCCC------------------------CCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCcc
Q 023193 161 AHNTLS------------------------DEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSG 216 (286)
Q Consensus 161 ~~n~l~------------------------~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 216 (286)
++|.++ +.++...+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 666554 2333333445556666666666655 333 35566677777777777776
Q ss_pred ccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 217 AIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 217 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++++.+++.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECC
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcC
Confidence 667777777777777777777777777777777888888888888877777777777777776654
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=3.2e-26 Score=204.56 Aligned_cols=135 Identities=19% Similarity=0.223 Sum_probs=70.7
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccC-chhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEE
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSI-PSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLD 159 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 159 (286)
.+++.|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45666667666666655666666666666666666554333 34455566666666666665555555555555555555
Q ss_pred eecCCCCCCCchh-hhcCCCCccEeeeeccccCCCCCcc-CcCCCCcceEecccCCCc
Q 023193 160 FAHNTLSDEIPAN-ICSNLPFLEILSLSQNMFHGGIPST-LSNCTYLQKLSLPYNDFS 215 (286)
Q Consensus 160 L~~n~l~~~l~~~-~~~~l~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~ 215 (286)
+++|.+++..+.. .+..+++|++|++++|.+++..|.. +..+++|++|++++|.++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 5555554322221 1244445555555555444433332 344444444444444433
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.1e-25 Score=189.19 Aligned_cols=185 Identities=24% Similarity=0.268 Sum_probs=170.6
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCC-CCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEE
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQ-LSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLD 159 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 159 (286)
.+++.|++++|.+++..+..|.++++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 689999999999998889999999999999999997 7766688899999999999999999988888899999999999
Q ss_pred eecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCC
Q 023193 160 FAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQ 239 (286)
Q Consensus 160 L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 239 (286)
+++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 136 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 9999998 667665688999999999999999776677999999999999999999888999999999999999999999
Q ss_pred CCchhhhcCCCCCCEEecccCcccccc
Q 023193 240 GEIPQEFGNLAELEQMSLSENKLQGMI 266 (286)
Q Consensus 240 ~~~~~~~~~l~~L~~L~l~~n~l~~~~ 266 (286)
+..+..+..+++|+.|++++|+++...
T Consensus 215 ~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 215 ALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred cCCHHHcccCcccCEEeccCCCccCCC
Confidence 888888999999999999999997543
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.7e-25 Score=192.00 Aligned_cols=211 Identities=21% Similarity=0.252 Sum_probs=161.1
Q ss_pred CCCCceeeEecCC---------CCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEcc
Q 023193 67 LVCNWTGVTCDVH---------SHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFR 137 (286)
Q Consensus 67 ~~c~~~g~~c~~~---------~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (286)
+.|.|..+.|... ..+++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4477888888532 2578999999999998778889999999999999999998889999999999999999
Q ss_pred CCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCC--CCCccCcCC--------------
Q 023193 138 ENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHG--GIPSTLSNC-------------- 201 (286)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~-------------- 201 (286)
+|.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|.++. ..+..+..+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence 99998 5555544 78888888888887 5666655778888888888887742 334444332
Q ss_pred ------CCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccC
Q 023193 202 ------TYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSS 275 (286)
Q Consensus 202 ------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 275 (286)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++
T Consensus 187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 35666666666666655566777777777777777777766667777777777777777777 56666777777
Q ss_pred CCceeee
Q 023193 276 SACFCIR 282 (286)
Q Consensus 276 l~~l~l~ 282 (286)
++.++++
T Consensus 266 L~~L~l~ 272 (332)
T 2ft3_A 266 LQVVYLH 272 (332)
T ss_dssp CCEEECC
T ss_pred CCEEECC
Confidence 7777654
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=202.52 Aligned_cols=180 Identities=26% Similarity=0.262 Sum_probs=145.6
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccC---------------
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAF--------------- 145 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------- 145 (286)
.+++.|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|++|++++|.++...
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 55667777777776666666666777777777777666444445666666666666666554322
Q ss_pred ----------CccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCc
Q 023193 146 ----------PSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFS 215 (286)
Q Consensus 146 ----------p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 215 (286)
+..+..+++|++|++++|.++ .+|. +..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus 168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp CCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCCcceeCcchhhcccccCeecCCCCcCc-cccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 234667888999999999997 6774 378999999999999999888999999999999999999999
Q ss_pred cccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCccc
Q 023193 216 GAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQ 263 (286)
Q Consensus 216 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 263 (286)
+..+..+..+++|++|+|++|.+++..+..+..+++|+.|++++|++.
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 988899999999999999999999888888999999999999999985
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=7.5e-26 Score=202.24 Aligned_cols=181 Identities=22% Similarity=0.217 Sum_probs=150.7
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCcc------------
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSL------------ 148 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~------------ 148 (286)
.+++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence 66888888888888777778888888888888888887666666777888888888888776444333
Q ss_pred -------------ccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCc
Q 023193 149 -------------IFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFS 215 (286)
Q Consensus 149 -------------~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 215 (286)
+..+++|++|++++|.++ .+|. +..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus 179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCccccChhhccCCCCCCEEECCCCccc-cccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 445666677777777776 4443 357889999999999999888999999999999999999999
Q ss_pred cccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccc
Q 023193 216 GAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQG 264 (286)
Q Consensus 216 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 264 (286)
+..+..+..+++|++|+|++|.+++..+..+..+++|+.|++++|++.-
T Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 9889999999999999999999998888889999999999999999863
No 22
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.9e-26 Score=189.94 Aligned_cols=200 Identities=21% Similarity=0.186 Sum_probs=154.9
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
..++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45888999999888777778888899999999999888777778888889999999999988777788888889999999
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCC-CCccCcCCCCcceEecccCCCccccchhhcCCcccc----eeeccc
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGG-IPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLK----RLYLGR 235 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~L~~ 235 (286)
++|.++ .++...+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+.+++ .+++++
T Consensus 108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 998887 45543347888899999999888763 588888888899999999988876666666555555 677777
Q ss_pred ccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 236 NRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 236 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
|.+++..+..+. ..+|+.|++++|++++..+..++.+++++.+++.
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 777754444433 3467777777777777666666777777766654
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=9.5e-26 Score=201.48 Aligned_cols=101 Identities=23% Similarity=0.225 Sum_probs=55.3
Q ss_pred EeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCc
Q 023193 182 ILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENK 261 (286)
Q Consensus 182 ~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 261 (286)
++++++|.+++..|..++.+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus 279 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC
T ss_pred EEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc
Confidence 33333333333344445555556666666666555555555555556666666665555555555555556666666665
Q ss_pred ccccchHHHhhccCCCceeee
Q 023193 262 LQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 262 l~~~~~~~l~~l~~l~~l~l~ 282 (286)
+++..|..+..+++|+.+++.
T Consensus 359 l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 359 IRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECC
T ss_pred ccccChhhccccccccEEECC
Confidence 555555555555555555543
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=4.9e-25 Score=189.00 Aligned_cols=211 Identities=20% Similarity=0.247 Sum_probs=147.1
Q ss_pred CCCCceeeEecCC---------CCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEcc
Q 023193 67 LVCNWTGVTCDVH---------SHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFR 137 (286)
Q Consensus 67 ~~c~~~g~~c~~~---------~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (286)
+.|.+..+.|... ...++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4567888887531 2568899999999998777789999999999999999998889999999999999999
Q ss_pred CCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCC--CCCccCcCCCCcce---------
Q 023193 138 ENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHG--GIPSTLSNCTYLQK--------- 206 (286)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~~L~~--------- 206 (286)
+|.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|.+.. ..+..+..+++|++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99988 4555443 57777777777776 4555555667777777777776642 34444555555544
Q ss_pred ------------EecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhcc
Q 023193 207 ------------LSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYS 274 (286)
Q Consensus 207 ------------L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 274 (286)
|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..++
T Consensus 185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 263 (330)
T 1xku_A 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 263 (330)
T ss_dssp SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS
T ss_pred cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCC
Confidence 555555555444555666666666666666666555556666666666666666665 4555566666
Q ss_pred CCCceeee
Q 023193 275 SSACFCIR 282 (286)
Q Consensus 275 ~l~~l~l~ 282 (286)
+++.+++.
T Consensus 264 ~L~~L~l~ 271 (330)
T 1xku_A 264 YIQVVYLH 271 (330)
T ss_dssp SCCEEECC
T ss_pred CcCEEECC
Confidence 66665553
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-25 Score=205.77 Aligned_cols=199 Identities=23% Similarity=0.200 Sum_probs=145.7
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.++++++.+....+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 45677888888887666666788888999999999888777778888889999999999888877778888889999999
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCC---------------
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNL--------------- 225 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--------------- 225 (286)
++|.++ .+|..+|..+++|++|++++|.+++..|..++.+++|++|++++|.+++..+..+..+
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 999887 6777776888889999999998887777788888888888888888775432222111
Q ss_pred ----------------------cccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 226 ----------------------NKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 226 ----------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
++|+.|+|++|.+++ +..+..+++|+.|++++|.+++.+|..++.+++|+.+++.
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 124444444444443 2445556666666666666666666666666666655543
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=5.2e-26 Score=193.02 Aligned_cols=184 Identities=23% Similarity=0.300 Sum_probs=162.1
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCc-hhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEE
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIP-SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLD 159 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 159 (286)
.+++.|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 78 ~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 78 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred cccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 56778888888877 466678889999999999998875544 5788899999999999999988888899999999999
Q ss_pred eecCCCCC-CCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccC
Q 023193 160 FAHNTLSD-EIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRL 238 (286)
Q Consensus 160 L~~n~l~~-~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 238 (286)
+++|.+++ .+|..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 157 l~~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 157 MAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CTTCEEGGGEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred CCCCccccccchhHH-hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 99999975 245544 8899999999999999988889999999999999999999987777889999999999999999
Q ss_pred CCCchhhhcCCC-CCCEEecccCcccccc
Q 023193 239 QGEIPQEFGNLA-ELEQMSLSENKLQGMI 266 (286)
Q Consensus 239 ~~~~~~~~~~l~-~L~~L~l~~n~l~~~~ 266 (286)
++..|..+..++ +|+.|++++|++++..
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred cccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 999999999985 8999999999998653
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=4.5e-25 Score=193.47 Aligned_cols=199 Identities=23% Similarity=0.200 Sum_probs=142.9
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.++++++.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 55677888888877555555778888888888888888666678888888888888888888777777888888888888
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCC---------------
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNL--------------- 225 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--------------- 225 (286)
++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++.....+..+
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 888887 6777766778888888888888887777778888888888888887765322222111
Q ss_pred ----------------------cccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 226 ----------------------NKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 226 ----------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|+.+++.
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred CCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 2344455555555432 345666667777777777766666666666666666553
No 28
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=3e-25 Score=181.79 Aligned_cols=195 Identities=15% Similarity=0.208 Sum_probs=167.9
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCC-CCccCchhhhcCCCCcEEEccC-CCCCccCCccccCCCCCCEE
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQ-LSGSIPSAIFGTYTLKYVNFRE-NQLSGAFPSLIFNKSSLQLL 158 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L 158 (286)
..++.|++++|.+++..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478999999999998777789999999999999997 8766667899999999999998 99997777889999999999
Q ss_pred EeecCCCCCCCchhhhcCCCCcc---Eeeeecc-ccCCCCCccCcCCCCcc-eEecccCCCccccchhhcCCcccceeec
Q 023193 159 DFAHNTLSDEIPANICSNLPFLE---ILSLSQN-MFHGGIPSTLSNCTYLQ-KLSLPYNDFSGAIPKEIGNLNKLKRLYL 233 (286)
Q Consensus 159 ~L~~n~l~~~l~~~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L 233 (286)
++++|.++ .+|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++...+..+.. ++|++|++
T Consensus 111 ~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 99999998 5776 47888888 9999999 99877777799999999 9999999999444444444 89999999
Q ss_pred cccc-CCCCchhhhcCC-CCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 234 GRNR-LQGEIPQEFGNL-AELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 234 ~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
++|. +++..+..+..+ ++|+.|++++|++++..+. .+++++.++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~ 234 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIAR 234 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECT
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeecc
Confidence 9995 997778889999 9999999999999876555 45566666554
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=4.8e-25 Score=198.22 Aligned_cols=201 Identities=17% Similarity=0.203 Sum_probs=153.4
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46788888888888777788888888888888888888777888888888888888888888666666788888888888
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
++|.+++ ++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 112 s~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 112 SENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 8888874 444444778888888888888887777778888888888888888886666667777777788777777776
Q ss_pred CchhhhcCCCCCCE------------------------EecccCcccccchHHHhhccCCCceeee
Q 023193 241 EIPQEFGNLAELEQ------------------------MSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 241 ~~~~~~~~l~~L~~------------------------L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
..+..+..+++|+. |++++|++++..+..+..+++|+.+++.
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECC
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECC
Confidence 65555655555555 4555555665555667777777766654
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.3e-24 Score=179.98 Aligned_cols=177 Identities=23% Similarity=0.297 Sum_probs=82.5
Q ss_pred cEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEee
Q 023193 82 RVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFA 161 (286)
Q Consensus 82 ~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 161 (286)
+++.++++++.+.. + +.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 34444454444431 1 1244445555555555544421 234444455555555555544444444444555555555
Q ss_pred cCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCC
Q 023193 162 HNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGE 241 (286)
Q Consensus 162 ~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 241 (286)
+|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 118 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 118 ENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 55554 33333334444555555555554443334444445555555555555444444444445555555555555544
Q ss_pred chhhhcCCCCCCEEecccCccc
Q 023193 242 IPQEFGNLAELEQMSLSENKLQ 263 (286)
Q Consensus 242 ~~~~~~~l~~L~~L~l~~n~l~ 263 (286)
.+..+..+++|+.|++++|+++
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHHhCCcCCCEEEccCCCcc
Confidence 4444444455555555544443
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.5e-24 Score=182.77 Aligned_cols=179 Identities=26% Similarity=0.246 Sum_probs=139.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
..++.|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 5677888888888877777788888888888888888744332 67788888888888887 66777778888888888
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
++|+++ .++...|..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|+|++|.++
T Consensus 108 ~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 108 SFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp CSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred CCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 888887 566555577888888888888888666666777888888888888888665666777888888888888888
Q ss_pred CchhhhcCCCCCCEEecccCcccc
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQG 264 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~ 264 (286)
.+|..+...++|+.+++++|++..
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccChhhcccccCCeEEeCCCCccC
Confidence 566667777788888888888753
No 32
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=4.6e-25 Score=184.21 Aligned_cols=187 Identities=24% Similarity=0.231 Sum_probs=168.6
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+.+. +.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 7799999999999863 47899999999999999999777778899999999999999999888888899999999999
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
++|.++ .++...+..+++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 141 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 141 AHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 999998 6666666889999999999999998777788999999999999999998888888999999999999999885
Q ss_pred CchhhhcCCCCCCEEecccCcccccchHHHhhccCCC
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSA 277 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~ 277 (286)
. +++|+.++++.|.++|.+|.+++.+....
T Consensus 220 ~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~~~ 249 (272)
T 3rfs_A 220 T-------CPGIRYLSEWINKHSGVVRNSAGSVAPDS 249 (272)
T ss_dssp C-------TTTTHHHHHHHHHTGGGBBCTTSCBCGGG
T ss_pred c-------CcHHHHHHHHHHhCCCcccCcccccCCCC
Confidence 4 56789999999999999999988876544
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=3.7e-25 Score=191.49 Aligned_cols=203 Identities=19% Similarity=0.213 Sum_probs=171.3
Q ss_pred CCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCC-ccccCCCCCCEE
Q 023193 80 SHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFP-SLIFNKSSLQLL 158 (286)
Q Consensus 80 ~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L 158 (286)
..+++.|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ ..+..+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 3789999999999998888889999999999999999996555568999999999999999995444 478899999999
Q ss_pred EeecCC-CCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeeccccc
Q 023193 159 DFAHNT-LSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNR 237 (286)
Q Consensus 159 ~L~~n~-l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 237 (286)
++++|. ++ .++...+..+++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 155 ~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 155 RVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred ECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 999995 65 6665555889999999999999998889999999999999999999875444445567889999999998
Q ss_pred CCCC-------------------------------chhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeeee
Q 023193 238 LQGE-------------------------------IPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 238 l~~~-------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
+++. +|..+..+++|+.|++++|++++..+..++.+++++.+++..
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence 8863 456678888999999999999854445568888888887653
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.5e-24 Score=193.53 Aligned_cols=200 Identities=18% Similarity=0.141 Sum_probs=114.3
Q ss_pred cEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEee
Q 023193 82 RVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFA 161 (286)
Q Consensus 82 ~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 161 (286)
+++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence 34444444444443333334444444444444444444444445555555555555555555555555566666666666
Q ss_pred cCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEeccc------------------------CCCccc
Q 023193 162 HNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPY------------------------NDFSGA 217 (286)
Q Consensus 162 ~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~------------------------n~l~~~ 217 (286)
+|.++ .++...+..+++|++|++++|.+.+..+..+..+++|++|++++ |.+++.
T Consensus 161 ~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 161 KCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp SCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred CCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 66665 45554446666666777766666655455555555555544444 444433
Q ss_pred cchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 218 IPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 218 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
.+..+..+++|++|+|++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.++++
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 33455666666677777776666666666667777777777777777777777777777766654
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=7e-25 Score=200.33 Aligned_cols=196 Identities=19% Similarity=0.215 Sum_probs=162.0
Q ss_pred CCCceeeEecCC-----------CCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEc
Q 023193 68 VCNWTGVTCDVH-----------SHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNF 136 (286)
Q Consensus 68 ~c~~~g~~c~~~-----------~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 136 (286)
.|.|.|+ |+.. ..+++.|++++|.+++..|..|.++++|++|++++|.+.+..|..|..+++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4777776 6532 247899999999999888889999999999999999999888889999999999999
Q ss_pred cCCCCCccCCccccCCCCCCEEEeecCCCCC-CCchhhhcCCCCccEeeeeccccCCCCC-ccCcCCCCcceEecccCCC
Q 023193 137 RENQLSGAFPSLIFNKSSLQLLDFAHNTLSD-EIPANICSNLPFLEILSLSQNMFHGGIP-STLSNCTYLQKLSLPYNDF 214 (286)
Q Consensus 137 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~l~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~L~~L~l~~n~l 214 (286)
++|.+++..|..+..+++|++|++++|.+++ ..|..+ +.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 9999998777779999999999999999974 234444 789999999999998544444 6789999999999999999
Q ss_pred ccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCccccc
Q 023193 215 SGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265 (286)
Q Consensus 215 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 265 (286)
++..|..++.+++|++|++++|.+....+..+..+++|++|++++|++++.
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 988888888888888888888887643333445678888888888888764
No 36
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=9.5e-26 Score=192.06 Aligned_cols=196 Identities=20% Similarity=0.210 Sum_probs=161.8
Q ss_pred CcEEEEEeCCCCCcccCchhc--cCCCCCCEEEcccCCCCccCchhhhcC-----CCCcEEEccCCCCCccCCccccCCC
Q 023193 81 HRVTILNISRLNLTGTIPSQL--GNLSSLQSLDLSFNQLSGSIPSAIFGT-----YTLKYVNFRENQLSGAFPSLIFNKS 153 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~ 153 (286)
.+++.|++++|.+++..|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|++++..|..+..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 678899999999998888876 8899999999999999876 7777777 8999999999999988888999999
Q ss_pred CCCEEEeecCCCCCCC--chhh-hcCCCCccEeeeeccccCC--CCC-ccCcCCCCcceEecccCCCccccc-hhhcCCc
Q 023193 154 SLQLLDFAHNTLSDEI--PANI-CSNLPFLEILSLSQNMFHG--GIP-STLSNCTYLQKLSLPYNDFSGAIP-KEIGNLN 226 (286)
Q Consensus 154 ~L~~L~L~~n~l~~~l--~~~~-~~~l~~L~~L~l~~n~l~~--~~p-~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~ 226 (286)
+|++|++++|.+.+.+ +..+ +..+++|++|++++|.+++ ..+ ..+..+++|++|++++|.+++..| ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 9999999999987542 2222 3678999999999999973 222 334577899999999999998664 4566678
Q ss_pred ccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 227 KLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 227 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
+|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++++.+++.
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLK 304 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECT
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEecc
Confidence 9999999999998 6676665 8899999999999887 55 7888877777654
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=2e-24 Score=199.56 Aligned_cols=200 Identities=22% Similarity=0.257 Sum_probs=100.3
Q ss_pred CcEEEEEeCCCCCcccCch-hccCCCCCCEEEcccCCCCccC--chhhhcCCCCcEEEccCCCCCccCCccccCCCCCCE
Q 023193 81 HRVTILNISRLNLTGTIPS-QLGNLSSLQSLDLSFNQLSGSI--PSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQL 157 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 157 (286)
..++.|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 3455555555555543332 2455555555555555554332 344445555555555555554444444444445555
Q ss_pred EEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCcc---------------------------CcCCCCcceEecc
Q 023193 158 LDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPST---------------------------LSNCTYLQKLSLP 210 (286)
Q Consensus 158 L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~---------------------------~~~~~~L~~L~l~ 210 (286)
|++++|.+++..+...+..+++|++|++++|.+++..|.. +..+++|++|+++
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence 5555544443333332244444444444444444444444 4444555555555
Q ss_pred cCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceee
Q 023193 211 YNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCI 281 (286)
Q Consensus 211 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l 281 (286)
+|.+++..|..+..+++|++|++++|.+++.+|..+..++.| .|++++|++++.+|..+..+++++.+++
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred CCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence 555554445555555555555555555555555555555555 5555555555555555555555555444
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=4.2e-24 Score=183.16 Aligned_cols=187 Identities=22% Similarity=0.284 Sum_probs=148.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCch----------------------hhhcCCCCcEEEccC
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPS----------------------AIFGTYTLKYVNFRE 138 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~ 138 (286)
.+++.|++++|.+++..|..|+++++|++|++++|.+. .+|. .+..+++|++|++++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence 67889999999988877888888888888888888776 3333 344555566666666
Q ss_pred CCCCc--cCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCcc
Q 023193 139 NQLSG--AFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSG 216 (286)
Q Consensus 139 n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 216 (286)
|.+.. ..+..+..+++|++|++++|.++ .+|..+ .++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 155 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 155 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 65542 44555666666677777766665 455544 3678888888888887778889999999999999999998
Q ss_pred ccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhc
Q 023193 217 AIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFY 273 (286)
Q Consensus 217 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 273 (286)
..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|+..
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCc
Confidence 87878999999999999999999 788889999999999999999999888877644
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=2.7e-24 Score=198.73 Aligned_cols=199 Identities=27% Similarity=0.280 Sum_probs=109.0
Q ss_pred cEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEee
Q 023193 82 RVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFA 161 (286)
Q Consensus 82 ~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 161 (286)
.++.+++++|.+.+..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 4666666666666555555666666666666666665 555566666666666666666665555555556666666666
Q ss_pred cCCCCCCCchhhhcCCCCccEeeeeccccCCCC--CccCcCCCCcceEecccCCCccccchhh-----------------
Q 023193 162 HNTLSDEIPANICSNLPFLEILSLSQNMFHGGI--PSTLSNCTYLQKLSLPYNDFSGAIPKEI----------------- 222 (286)
Q Consensus 162 ~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~--p~~~~~~~~L~~L~l~~n~l~~~~~~~~----------------- 222 (286)
+|.+.+.++...+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 665554444443345555555555555554332 3444444555555555554444444444
Q ss_pred --------cCCcccceeecccccCCCCchhhhcCCCCCCEEecccCccccc---chHHHhhccCCCceee
Q 023193 223 --------GNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM---IINFLQFYSSSACFCI 281 (286)
Q Consensus 223 --------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~l~~l~~l~l 281 (286)
..+++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+..+++|+.+++
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 4445555555555555544455555555555555555555442 1234555555555544
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=6.7e-24 Score=186.01 Aligned_cols=199 Identities=21% Similarity=0.272 Sum_probs=127.5
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 45666777777666555556666667777777766666555566666666666666666666433334466666666666
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCC----------------------------------------------
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGI---------------------------------------------- 194 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~---------------------------------------------- 194 (286)
++|.++ .++...+..+++|++|++++|.+++..
T Consensus 149 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 149 SNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCccC-ccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 666665 333333355666666666666554321
Q ss_pred -------------CccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCc
Q 023193 195 -------------PSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENK 261 (286)
Q Consensus 195 -------------p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 261 (286)
+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ +|..+..+++|++|++++|+
T Consensus 228 L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred ccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCc
Confidence 1224455667777777777776667777777777777777777774 45555667777788888887
Q ss_pred ccccchHHHhhccCCCceeee
Q 023193 262 LQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 262 l~~~~~~~l~~l~~l~~l~l~ 282 (286)
++ .+|..+..+++|+.++++
T Consensus 307 l~-~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 307 LL-HVERNQPQFDRLENLYLD 326 (390)
T ss_dssp CC-CCGGGHHHHTTCSEEECC
T ss_pred ce-ecCccccccCcCCEEECC
Confidence 76 345566777777777654
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.2e-24 Score=196.64 Aligned_cols=200 Identities=21% Similarity=0.269 Sum_probs=149.5
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+.+..|..|+.+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 56788888888888777778888888888888888888777777788888888888888888555555678888888888
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCC----------------------------------------------
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGI---------------------------------------------- 194 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~---------------------------------------------- 194 (286)
++|.+++ ++...+..+++|++|++++|.+++..
T Consensus 155 s~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 155 SNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 8888874 44433477777888888777765421
Q ss_pred -------------CccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCc
Q 023193 195 -------------PSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENK 261 (286)
Q Consensus 195 -------------p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 261 (286)
+..+..+++|++|++++|.+++..|..++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.
T Consensus 234 L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 234 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC
Confidence 1234556677777777777777777777777888888888888775 45556667788888888888
Q ss_pred ccccchHHHhhccCCCceeeee
Q 023193 262 LQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 262 l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
++ .+|..+..+++|+.++++.
T Consensus 313 l~-~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 313 LL-HVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp CC-CCGGGHHHHTTCSEEECCS
T ss_pred CC-ccCcccccCCCCCEEECCC
Confidence 87 4666777778877777643
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=1.4e-25 Score=208.54 Aligned_cols=186 Identities=18% Similarity=0.305 Sum_probs=137.0
Q ss_pred CcEEEEEeCCCCCccc-----------------Cchhcc--CCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCC-
Q 023193 81 HRVTILNISRLNLTGT-----------------IPSQLG--NLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQ- 140 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~- 140 (286)
.+++.|++++|.+++. +|+.++ ++++|++|++++|.+.+.+|..+..+++|++|++++|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 6788899999998875 888888 89999999999998888888888888999999999988
Q ss_pred CCc-cCCccccCC------CCCCEEEeecCCCCCCCch--hhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEeccc
Q 023193 141 LSG-AFPSLIFNK------SSLQLLDFAHNTLSDEIPA--NICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPY 211 (286)
Q Consensus 141 l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~l~~--~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~ 211 (286)
+++ .+|..++.+ ++|++|++++|.++ .+|. .+ +.+++|++|++++|.++|.+| .++.+++|++|++++
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 887 778777665 78888888888887 7777 44 778888888888888877777 666666777777777
Q ss_pred CCCccccchhhcCCcc-cceeecccccCCCCchhhhcCCC--CCCEEecccCcccccchHHHh
Q 023193 212 NDFSGAIPKEIGNLNK-LKRLYLGRNRLQGEIPQEFGNLA--ELEQMSLSENKLQGMIINFLQ 271 (286)
Q Consensus 212 n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~l~ 271 (286)
|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|+.|++++|.+++.+|..+.
T Consensus 363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 363 NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 6666 55555666666 666666666665 4454444332 455555555555555554444
No 43
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.91 E-value=5.5e-24 Score=170.60 Aligned_cols=187 Identities=21% Similarity=0.242 Sum_probs=131.4
Q ss_pred CCCCceeeEecCCCCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCC
Q 023193 67 LVCNWTGVTCDVHSHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFP 146 (286)
Q Consensus 67 ~~c~~~g~~c~~~~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 146 (286)
..|.|.++.|.. +.++ .+|..+ .+++++|++++|.+.+..+..|..+++|++|++++|++++..+
T Consensus 5 C~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 5 CSCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp CEEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 457888888854 2232 233222 3467778888877775555566777778888888887776555
Q ss_pred ccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCc
Q 023193 147 SLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLN 226 (286)
Q Consensus 147 ~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 226 (286)
..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 56677777888888888776 55555556777788888888877766556677777788888888877766565677777
Q ss_pred ccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCC
Q 023193 227 KLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSS 276 (286)
Q Consensus 227 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l 276 (286)
+|++|++++|.+.+ .+++|+.|+++.|+++|.+|.+++.++..
T Consensus 149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~~ 191 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAPD 191 (208)
T ss_dssp TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCTT
T ss_pred CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccCC
Confidence 78888888887653 34567777788888888887777766543
No 44
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1e-23 Score=177.67 Aligned_cols=194 Identities=24% Similarity=0.208 Sum_probs=170.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
..++.+++++++++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence 56888999999998 5665553 6899999999999988888999999999999999999865443 78999999999
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
++|.++ .+|..+ ..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+|++|.+++
T Consensus 85 s~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 85 SHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCcCC-cCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 999998 788766 789999999999999997777889999999999999999998777888999999999999999997
Q ss_pred CchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
..+..+..+++|++|++++|+++ .+|..+....+++.+++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeC
Confidence 77778899999999999999998 566667677777776654
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.7e-24 Score=200.06 Aligned_cols=199 Identities=22% Similarity=0.263 Sum_probs=146.1
Q ss_pred CcEEEEEeCCCCCccc--CchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCC-ccccCCCCCCE
Q 023193 81 HRVTILNISRLNLTGT--IPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFP-SLIFNKSSLQL 157 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~ 157 (286)
.+++.+++++|.+++. .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..| ..+..+++|++
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 5566777777776654 3666777777777777777766 355667777778888888777776666 56777778888
Q ss_pred EEeecCCCCCCCchhhhcCCCCccEeeeeccccCC-CCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccc
Q 023193 158 LDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHG-GIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRN 236 (286)
Q Consensus 158 L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 236 (286)
|++++|.+++..|..+ ..+++|++|++++|.+++ .+|..++.+++|++|++++|++++..|..+..+++|++|++++|
T Consensus 429 L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EECcCCCCCccchhhh-cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 8888887775455444 677788888888887776 36777777888888888888887777777777888888888888
Q ss_pred cCCCCchhhhcCCCCCCEEecccCcccccchHHHhhcc-CCCceeee
Q 023193 237 RLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYS-SSACFCIR 282 (286)
Q Consensus 237 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~l~~l~l~ 282 (286)
.+++.+|..+..+++|+.|++++|+++ .+|..+..++ +++.+++.
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECC
T ss_pred cCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEcc
Confidence 888777777888888888888888877 4555577765 37766654
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.3e-23 Score=196.62 Aligned_cols=201 Identities=25% Similarity=0.264 Sum_probs=156.1
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57889999999998877778899999999999999998888888889999999999999988665567888999999999
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhc--CCcccceeecccccC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIG--NLNKLKRLYLGRNRL 238 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l 238 (286)
++|.++ .++...++.+++|++|++++|.+++..|..++.+++|++|++++|.+++..+..+. .+++|++|++++|.+
T Consensus 105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999987 55554458889999999999998888788888888889999888888876665543 346777777777777
Q ss_pred CCCchhhh---------------------------------------------------cCCC--CCCEEecccCccccc
Q 023193 239 QGEIPQEF---------------------------------------------------GNLA--ELEQMSLSENKLQGM 265 (286)
Q Consensus 239 ~~~~~~~~---------------------------------------------------~~l~--~L~~L~l~~n~l~~~ 265 (286)
++..|..+ ..++ +|+.|++++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 66555433 3332 266666666666666
Q ss_pred chHHHhhccCCCceeee
Q 023193 266 IINFLQFYSSSACFCIR 282 (286)
Q Consensus 266 ~~~~l~~l~~l~~l~l~ 282 (286)
.|..++.+++++.+++.
T Consensus 264 ~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp CTTTTTTCTTCCEEECC
T ss_pred CcccccCcccccEeeCC
Confidence 66666666666666654
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=4.8e-24 Score=197.06 Aligned_cols=199 Identities=21% Similarity=0.210 Sum_probs=176.6
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67899999999999888889999999999999999999888889999999999999999999888999999999999999
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCC-CCCccCcCCCCcceEecccCCCccccchhhcCCcccc----eeeccc
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHG-GIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLK----RLYLGR 235 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~L~~ 235 (286)
++|.++ .++...++.+++|++|++++|.+++ .+|..++++++|++|++++|++++..|..++.+++|+ ++++++
T Consensus 112 ~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 112 VETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred cCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 999998 4554335899999999999999986 5799999999999999999999988888787777665 799999
Q ss_pred ccCCCCchhhhcCCCCCCEEecccCccc-ccchHHHhhccCCCceee
Q 023193 236 NRLQGEIPQEFGNLAELEQMSLSENKLQ-GMIINFLQFYSSSACFCI 281 (286)
Q Consensus 236 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~l~~l~l 281 (286)
|.+++..+..+... +|+.|++++|.++ +..|..++.++.++.+++
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l 236 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccc
Confidence 99997666666555 8999999999987 567788888888876654
No 48
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8.5e-24 Score=176.78 Aligned_cols=186 Identities=25% Similarity=0.240 Sum_probs=163.9
Q ss_pred CCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEE
Q 023193 80 SHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLD 159 (286)
Q Consensus 80 ~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 159 (286)
..+++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 36799999999999988888899999999999999999988888999999999999999999987777899999999999
Q ss_pred eecCCCCC-CCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcc----eEecccCCCccccchhhcCCcccceeecc
Q 023193 160 FAHNTLSD-EIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQ----KLSLPYNDFSGAIPKEIGNLNKLKRLYLG 234 (286)
Q Consensus 160 L~~n~l~~-~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 234 (286)
+++|.+++ .+|..+ ..+++|++|++++|++++..+..+..+.+|+ +|++++|.+++..+..+. ..+|++|+++
T Consensus 131 l~~n~l~~~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~ 208 (276)
T 2z62_A 131 VAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALD 208 (276)
T ss_dssp CCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECC
T ss_pred CcCCccceecCchhh-ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECC
Confidence 99999984 256665 8899999999999999977777777777776 899999999976555544 4589999999
Q ss_pred cccCCCCchhhhcCCCCCCEEecccCcccccch
Q 023193 235 RNRLQGEIPQEFGNLAELEQMSLSENKLQGMII 267 (286)
Q Consensus 235 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 267 (286)
+|.+++..+..+..+++|+.|++++|++++..+
T Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 999998877788999999999999999997654
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=8.2e-24 Score=202.51 Aligned_cols=134 Identities=19% Similarity=0.160 Sum_probs=63.0
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccC-chhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEE
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSI-PSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLD 159 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 159 (286)
.+++.|++++|.+++..+..|.++++|++|++++|...+.+ |..|.++++|++|++++|.+++..|..+..+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 45556666666665555555555555555555555333333 44445555555555555555544444444444555555
Q ss_pred eecCCCCCCCchh-hhcCCCCccEeeeeccccCCCCC-ccCcCCCCcceEecccCCC
Q 023193 160 FAHNTLSDEIPAN-ICSNLPFLEILSLSQNMFHGGIP-STLSNCTYLQKLSLPYNDF 214 (286)
Q Consensus 160 L~~n~l~~~l~~~-~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~L~~L~l~~n~l 214 (286)
+++|.+++.++.. .+..+++|++|++++|.+++..+ ..++++++|++|++++|.+
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 5544444322222 12344444444444444443222 2344444444444444443
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=2.8e-23 Score=194.45 Aligned_cols=200 Identities=22% Similarity=0.279 Sum_probs=146.4
Q ss_pred cEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCc-hhhhcCCCCcEEEccCCCCC------------------
Q 023193 82 RVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIP-SAIFGTYTLKYVNFRENQLS------------------ 142 (286)
Q Consensus 82 ~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~------------------ 142 (286)
.++.+++++|.+.+..|..+..+++|++|++++|.+.+.++ ..+.++++|++|++++|.+.
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 56667777777776666666677777777777776665444 45555666666666665543
Q ss_pred --------ccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCC--------CccCcCCCCcce
Q 023193 143 --------GAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGI--------PSTLSNCTYLQK 206 (286)
Q Consensus 143 --------~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~--------p~~~~~~~~L~~ 206 (286)
+..|..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++.. +..+..+++|++
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 345666777788888888888887 566655577888888888888876431 123677788888
Q ss_pred EecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHh-hccCCCceeee
Q 023193 207 LSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQ-FYSSSACFCIR 282 (286)
Q Consensus 207 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~l~~l~l~ 282 (286)
|++++|+++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+. .+++++.+++.
T Consensus 541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECT
T ss_pred EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEcc
Confidence 88888888855455688888899999999999877777788888999999999999988888887 67777776654
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.3e-23 Score=189.20 Aligned_cols=83 Identities=27% Similarity=0.242 Sum_probs=59.2
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCc-cCCccccCCCCCCEEE
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSG-AFPSLIFNKSSLQLLD 159 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ 159 (286)
.+++.|++++|.+++..|..|+++++|++|++++|.+. .+|.. .+++|++|++++|.+++ ..|..+..+++|++|+
T Consensus 45 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~ 121 (520)
T 2z7x_B 45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121 (520)
T ss_dssp TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEE
T ss_pred ccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEE
Confidence 56777777777777666777777777777777777776 45544 67777777777777765 3567777777777777
Q ss_pred eecCCCC
Q 023193 160 FAHNTLS 166 (286)
Q Consensus 160 L~~n~l~ 166 (286)
+++|.++
T Consensus 122 L~~n~l~ 128 (520)
T 2z7x_B 122 LSTTHLE 128 (520)
T ss_dssp EEESSCC
T ss_pred ecCcccc
Confidence 7777664
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=2.7e-24 Score=204.45 Aligned_cols=181 Identities=20% Similarity=0.306 Sum_probs=143.7
Q ss_pred CcEEEEEeCCCCCcc-----------------cCchhcc--CCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCC-
Q 023193 81 HRVTILNISRLNLTG-----------------TIPSQLG--NLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQ- 140 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~- 140 (286)
.+++.|++++|.+++ .+|+.++ ++++|++|++++|.+.+.+|..+..+++|++|++++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 678899999999988 3888877 99999999999999888999999999999999999998
Q ss_pred CCc-cCCccccCCC-------CCCEEEeecCCCCCCCch--hhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecc
Q 023193 141 LSG-AFPSLIFNKS-------SLQLLDFAHNTLSDEIPA--NICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLP 210 (286)
Q Consensus 141 l~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~l~~--~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~ 210 (286)
+++ .+|..+..++ +|++|++++|.++ .+|. .+ ..+++|++|++++|.++ .+| .++.+++|+.|+++
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l-~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL-QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH-TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh-hcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence 887 7777655444 8999999999988 7887 45 78888888888888888 777 78888888888888
Q ss_pred cCCCccccchhhcCCcc-cceeecccccCCCCchhhhcCCCC--CCEEecccCcccccch
Q 023193 211 YNDFSGAIPKEIGNLNK-LKRLYLGRNRLQGEIPQEFGNLAE--LEQMSLSENKLQGMII 267 (286)
Q Consensus 211 ~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~ 267 (286)
+|.++ .+|..+..+++ |++|+|++|.++ .+|..+..++. |+.|++++|++++.+|
T Consensus 604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp SSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred CCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence 88888 67777777777 888888888877 56655554432 5555555555555443
No 53
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=3.5e-23 Score=170.75 Aligned_cols=175 Identities=23% Similarity=0.258 Sum_probs=156.8
Q ss_pred CCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEee
Q 023193 105 SSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILS 184 (286)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~ 184 (286)
...++++++++.+. .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence 35678999999998 6666554 68999999999999888889999999999999999998 45655558899999999
Q ss_pred eeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccc
Q 023193 185 LSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQG 264 (286)
Q Consensus 185 l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 264 (286)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++..+..+..+++|++|++++|++++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999997777888999999999999999997777778999999999999999998888889999999999999999999
Q ss_pred cchHHHhhccCCCceeeee
Q 023193 265 MIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 265 ~~~~~l~~l~~l~~l~l~~ 283 (286)
..+..+..+++++.+++..
T Consensus 170 ~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCTTTTTTCTTCCEEECCS
T ss_pred cCHHHHhCCCCCCEEEeeC
Confidence 9999999999999888753
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=8e-24 Score=190.66 Aligned_cols=194 Identities=23% Similarity=0.206 Sum_probs=117.0
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCc-------------
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPS------------- 147 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~------------- 147 (286)
++++.|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+.
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 468888888888888777888888888888888888876555 77888888888888877643221
Q ss_pred ---cccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCc-CCCCcceEecccCCCccccchhhc
Q 023193 148 ---LIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLS-NCTYLQKLSLPYNDFSGAIPKEIG 223 (286)
Q Consensus 148 ---~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~~L~~L~l~~n~l~~~~~~~~~ 223 (286)
....+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+ ..
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~ 188 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QV 188 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cc
Confidence 00123445555555555543222222 4455555555555555554444443 45555555555555554321 22
Q ss_pred CCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceee
Q 023193 224 NLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCI 281 (286)
Q Consensus 224 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l 281 (286)
.+++|+.|+|++|.+++.+| .+..+++|+.|++++|.+++ +|..+..++++..+++
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (487)
T ss_dssp CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence 35566666666666664333 35566666666666666664 4455555566555554
No 55
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=3.5e-24 Score=182.17 Aligned_cols=196 Identities=18% Similarity=0.184 Sum_probs=162.2
Q ss_pred CcEEEEEeCCCCCcccCchhc--cCCCCCCEEEcccCCCCccCc----hhhhcCCCCcEEEccCCCCCccCCccccCCCC
Q 023193 81 HRVTILNISRLNLTGTIPSQL--GNLSSLQSLDLSFNQLSGSIP----SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSS 154 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 154 (286)
.+++.|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 348999999999999998888 899999999999999986554 44567999999999999999888899999999
Q ss_pred CCEEEeecCCCCCC--Cch-hhhcCCCCccEeeeeccccCCCCCc----cCcCCCCcceEecccCCCccccchhhcCC--
Q 023193 155 LQLLDFAHNTLSDE--IPA-NICSNLPFLEILSLSQNMFHGGIPS----TLSNCTYLQKLSLPYNDFSGAIPKEIGNL-- 225 (286)
Q Consensus 155 L~~L~L~~n~l~~~--l~~-~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-- 225 (286)
|++|++++|++.+. ++. ..+..+++|++|++++|.++ .++. .++.+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999998642 222 22357899999999999997 3333 35678999999999999998878777766
Q ss_pred -cccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 226 -NKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 226 -~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
++|++|+|++|.++ .+|..+. ++|++|++++|++++. |. +..+++++.+++.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLD 302 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECS
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECc
Confidence 69999999999999 5666664 7999999999999985 22 5677888877764
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.3e-22 Score=172.28 Aligned_cols=183 Identities=24% Similarity=0.308 Sum_probs=87.4
Q ss_pred cEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEee
Q 023193 82 RVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFA 161 (286)
Q Consensus 82 ~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 161 (286)
+++.|+++++.+.. ++ .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+++. +.+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 34455555555442 22 3445555555555555554222 2 44555555555555555432 234455555555555
Q ss_pred cCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCC
Q 023193 162 HNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGE 241 (286)
Q Consensus 162 ~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 241 (286)
+|.++ .++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 116 ~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 116 STQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 55554 2332 2445555555555555543222 4445555555555555543222 44455555555555555533
Q ss_pred chhhhcCCCCCCEEecccCcccccchHHHhhccCCCceee
Q 023193 242 IPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCI 281 (286)
Q Consensus 242 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l 281 (286)
.+ +..+++|++|++++|++++..+ +..+++++.+++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l 224 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEE
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEc
Confidence 22 4445555555555555554432 444555554444
No 57
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=3.6e-23 Score=165.80 Aligned_cols=177 Identities=21% Similarity=0.213 Sum_probs=152.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 57899999999999777777899999999999999999766667889999999999999999777777899999999999
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. +++++.|++..|.++|
T Consensus 108 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTT
T ss_pred CCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCc
Confidence 999998 67776668899999999999999977777789999999999999987753 4679999999999999
Q ss_pred CchhhhcCCCCCCEEecccCcccccchHH
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQGMIINF 269 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 269 (286)
.+|..++.++. +...|...+..+..
T Consensus 180 ~ip~~~~~l~~----~~~~C~~~~~~~~~ 204 (208)
T 2o6s_A 180 VVRNSAGSVAP----DSAKCSGSGKPVRS 204 (208)
T ss_dssp TBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred eeeccCccccC----CccccccCCCccee
Confidence 99999887765 44455555544443
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=2.1e-24 Score=184.18 Aligned_cols=195 Identities=21% Similarity=0.199 Sum_probs=110.5
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCch----------------hhhcCCCCcEEEccCCCCCcc
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPS----------------AIFGTYTLKYVNFRENQLSGA 144 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~~~~l~~L~~L~l~~n~l~~~ 144 (286)
.+++.|++++|.+++..+ +..+++|++|++++|.+.+..+. ....+++|++|++++|.+++.
T Consensus 58 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~ 135 (317)
T 3o53_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135 (317)
T ss_dssp TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSG
T ss_pred CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCc
Confidence 456666666666654333 66666666666666655421100 001123444444555555544
Q ss_pred CCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcC
Q 023193 145 FPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGN 224 (286)
Q Consensus 145 ~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 224 (286)
.+..+..+++|++|++++|.+++..+..++..+++|++|++++|.+++. +. ...+++|++|++++|.+++. |..+..
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~ 212 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQS 212 (317)
T ss_dssp GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGG
T ss_pred cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcc
Confidence 4445555566666666666665333343434556666666666666533 22 22356666777777766643 334666
Q ss_pred CcccceeecccccCCCCchhhhcCCCCCCEEecccCccc-ccchHHHhhccCCCceee
Q 023193 225 LNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQ-GMIINFLQFYSSSACFCI 281 (286)
Q Consensus 225 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~l~~l~l 281 (286)
+++|++|++++|.++ .+|..+..+++|+.|++++|+++ +.+|.++..+++++.+++
T Consensus 213 l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 667777777777776 45556666677777777777766 666666666665554443
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=4.2e-23 Score=177.13 Aligned_cols=195 Identities=20% Similarity=0.246 Sum_probs=166.5
Q ss_pred cEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEee
Q 023193 82 RVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFA 161 (286)
Q Consensus 82 ~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 161 (286)
+++.++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3567899999987 5666553 689999999999997778899999999999999999998889999999999999999
Q ss_pred cCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCcc--ccchhhcCC--------------
Q 023193 162 HNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSG--AIPKEIGNL-------------- 225 (286)
Q Consensus 162 ~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l-------------- 225 (286)
+|.++ .+|..++ ++|++|++++|.+++..+..+..+++|++|++++|.++. ..+..+..+
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence 99998 7887663 899999999999997777779999999999999999863 444444433
Q ss_pred ------cccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeeee
Q 023193 226 ------NKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 226 ------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
++|++|++++|.+++..+..+..+++|+.|++++|++++..+..++.+++++.+++..
T Consensus 187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 4677777888888877778888999999999999999998888899999998888753
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=7.8e-24 Score=194.13 Aligned_cols=197 Identities=23% Similarity=0.286 Sum_probs=122.8
Q ss_pred EEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccC--chhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 83 VTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSI--PSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 83 l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
++.+++++|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|++|++
T Consensus 327 L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l 403 (570)
T 2z63_A 327 LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDF 403 (570)
T ss_dssp CCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEEC
T ss_pred cCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEc
Confidence 34444444444333222 45666666777666665432 55666667777777777766643333 666667777777
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCc-cccchhhcCCcccceeecccccCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFS-GAIPKEIGNLNKLKRLYLGRNRLQ 239 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~ 239 (286)
++|.+++..+...+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.++
T Consensus 404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~ 483 (570)
T 2z63_A 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483 (570)
T ss_dssp TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc
Confidence 7766654444334456666777777777666666666666667777777776665 355666666666777777777766
Q ss_pred CCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 240 GEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 240 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
+..|..+..+++|++|++++|++++..+..++.+++++.+++.
T Consensus 484 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence 6666666666677777777777766666666666666666554
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=6.1e-24 Score=180.85 Aligned_cols=180 Identities=20% Similarity=0.266 Sum_probs=155.9
Q ss_pred CCcEEEEEeCCCCCcccCchhccCC-----CCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCcc--CCccc--c
Q 023193 80 SHRVTILNISRLNLTGTIPSQLGNL-----SSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGA--FPSLI--F 150 (286)
Q Consensus 80 ~~~l~~l~l~~~~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~--~ 150 (286)
..+++.|++++|.+++. |..++.+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 37799999999999977 8878777 9999999999999988889999999999999999998764 34444 7
Q ss_pred CCCCCCEEEeecCCCCC--CCchhhhcCCCCccEeeeeccccCCCCC-ccCcCCCCcceEecccCCCccccchhhcCCcc
Q 023193 151 NKSSLQLLDFAHNTLSD--EIPANICSNLPFLEILSLSQNMFHGGIP-STLSNCTYLQKLSLPYNDFSGAIPKEIGNLNK 227 (286)
Q Consensus 151 ~l~~L~~L~L~~n~l~~--~l~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 227 (286)
.+++|++|++++|.+++ .++..++..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~ 275 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK 275 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence 89999999999999973 3444566788999999999999998765 45667899999999999999 6777665 89
Q ss_pred cceeecccccCCCCchhhhcCCCCCCEEecccCccccc
Q 023193 228 LKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265 (286)
Q Consensus 228 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 265 (286)
|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus 276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 99999999999976 55 88999999999999999874
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=3.6e-23 Score=198.09 Aligned_cols=87 Identities=21% Similarity=0.251 Sum_probs=47.0
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchh--hhcCCCCcEEEccCCCCCccCC-ccccCCCCCCE
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSA--IFGTYTLKYVNFRENQLSGAFP-SLIFNKSSLQL 157 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~ 157 (286)
.+++.|++++|.+.+..|..|+++++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+ ..+.++++|++
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 34555555555555555555555555555555555555443333 5555555555555555554433 34555555555
Q ss_pred EEeecCCCCC
Q 023193 158 LDFAHNTLSD 167 (286)
Q Consensus 158 L~L~~n~l~~ 167 (286)
|++++|.+++
T Consensus 153 L~Ls~N~i~~ 162 (844)
T 3j0a_A 153 IDFSSNQIFL 162 (844)
T ss_dssp EEEESSCCCC
T ss_pred EECCCCcCCe
Confidence 5555555543
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=184.96 Aligned_cols=105 Identities=27% Similarity=0.316 Sum_probs=55.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+.+..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 34555555555555544555555555555555555555555555555555555555555555 33333 4555555555
Q ss_pred ecCCCCC-CCchhhhcCCCCccEeeeeccc
Q 023193 161 AHNTLSD-EIPANICSNLPFLEILSLSQNM 189 (286)
Q Consensus 161 ~~n~l~~-~l~~~~~~~l~~L~~L~l~~n~ 189 (286)
++|.+++ .+|..+ +.+++|++|++++|.
T Consensus 98 ~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 98 SFNAFDALPICKEF-GNMSQLKFLGLSTTH 126 (520)
T ss_dssp CSSCCSSCCCCGGG-GGCTTCCEEEEEESS
T ss_pred cCCccccccchhhh-ccCCcceEEEecCcc
Confidence 5555543 233333 444444444444443
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=189.63 Aligned_cols=178 Identities=22% Similarity=0.216 Sum_probs=149.9
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 56889999999999888888999999999999999998777888999999999999999999888888999999999999
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCC-CCCccCcCCCCcceEecccCCCccccchhhcCCccc----ceeeccc
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHG-GIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKL----KRLYLGR 235 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~L~~ 235 (286)
++|.++ .++...++.+++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+++| +.+++++
T Consensus 108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 999997 5665445889999999999999986 468899999999999999999998777777777777 7888888
Q ss_pred ccCCCCchhhhcCCCCCCEEecccC
Q 023193 236 NRLQGEIPQEFGNLAELEQMSLSEN 260 (286)
Q Consensus 236 n~l~~~~~~~~~~l~~L~~L~l~~n 260 (286)
|.+++..|..+... +|+.|++++|
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESC
T ss_pred CCceecCHHHhccC-cceeEecccc
Confidence 88876666555443 4555555554
No 65
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=9e-23 Score=187.05 Aligned_cols=107 Identities=24% Similarity=0.314 Sum_probs=74.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 56777777777777666667777777777777777777666777777777777777777776 44444 6777777777
Q ss_pred ecCCCCC-CCchhhhcCCCCccEeeeeccccC
Q 023193 161 AHNTLSD-EIPANICSNLPFLEILSLSQNMFH 191 (286)
Q Consensus 161 ~~n~l~~-~l~~~~~~~l~~L~~L~l~~n~l~ 191 (286)
++|.+++ .+|..+ +.+++|++|++++|.++
T Consensus 129 s~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 129 SFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CSSCCSBCCCCGGG-GGCTTCCEEEEECSBCC
T ss_pred CCCCccccCchHhh-cccCcccEEecCCCccc
Confidence 7777763 122333 66677777777766654
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=2.7e-22 Score=183.17 Aligned_cols=194 Identities=22% Similarity=0.301 Sum_probs=169.8
Q ss_pred EEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCC
Q 023193 86 LNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTL 165 (286)
Q Consensus 86 l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 165 (286)
.+.+++.++ .+|..+. +++++|++++|.+.+..|..|.++++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 688888888 5666554 7999999999999988889999999999999999999988889999999999999999999
Q ss_pred CCCCchhhhcCCCCccEeeeeccccCC-CCCccCcCCCCcceEecccCCCccccc-hhhcCCcccceeecccccCCCCch
Q 023193 166 SDEIPANICSNLPFLEILSLSQNMFHG-GIPSTLSNCTYLQKLSLPYNDFSGAIP-KEIGNLNKLKRLYLGRNRLQGEIP 243 (286)
Q Consensus 166 ~~~l~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~ 243 (286)
+ .++...++.+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|
T Consensus 87 ~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 87 S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp C-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred C-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 8 5666655899999999999999986 457789999999999999998544444 679999999999999999999999
Q ss_pred hhhcCCCCCCEEecccCcccccchHHHhhccCCCceeeee
Q 023193 244 QEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 244 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
..++.+++|++|++++|.++......++.+++++.+++..
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred hhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence 9999999999999999998765555556788888887754
No 67
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1e-21 Score=169.28 Aligned_cols=190 Identities=23% Similarity=0.329 Sum_probs=115.8
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCc--------------------hhhhcCCCCcEEEccCCC
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIP--------------------SAIFGTYTLKYVNFRENQ 140 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------~~~~~l~~L~~L~l~~n~ 140 (286)
.+++.+++++|......+. +..+++|++|++++|.+.+..+ ..+..+++|+++++++|.
T Consensus 132 ~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ 210 (347)
T ss_dssp TTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCC
Confidence 4455666666543322222 4555555555555555442221 014444444444444444
Q ss_pred CCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccch
Q 023193 141 LSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPK 220 (286)
Q Consensus 141 l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~ 220 (286)
+.+..+ +..+++|++|++++|.++ .++. +..+++|++|++++|.+++. +.+..+++|++|++++|.+++. .
T Consensus 211 l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~ 281 (347)
T 4fmz_A 211 ITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--S 281 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--G
T ss_pred CCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--h
Confidence 443322 556666777777777766 3443 35677777777777776642 3466677777777777777653 3
Q ss_pred hhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 221 EIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 221 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..| ++.+++++.+++.
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 46677777777777777777777777777777788888887777666 6677777766654
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.4e-22 Score=164.41 Aligned_cols=180 Identities=19% Similarity=0.195 Sum_probs=155.5
Q ss_pred cCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCC-CCccCCccccCCCCCCEEEeec-CCCCCCCchhh
Q 023193 96 TIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQ-LSGAFPSLIFNKSSLQLLDFAH-NTLSDEIPANI 173 (286)
Q Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~l~~~~ 173 (286)
.+|. +. .++++|++++|.+.+..+..|.++++|++|++++|. +++..+..+..+++|++|++++ |.++ .++...
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~ 100 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDA 100 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTS
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHH
Confidence 4555 33 389999999999997777789999999999999997 8877777899999999999998 9998 677766
Q ss_pred hcCCCCccEeeeeccccCCCCCccCcCCCCcc---eEecccC-CCccccchhhcCCcccc-eeecccccCCCCchhhhcC
Q 023193 174 CSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQ---KLSLPYN-DFSGAIPKEIGNLNKLK-RLYLGRNRLQGEIPQEFGN 248 (286)
Q Consensus 174 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~ 248 (286)
|..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++...+..+..
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 6899999999999999985 666 88888888 9999999 99977777899999999 9999999999444445555
Q ss_pred CCCCCEEecccCc-ccccchHHHhhc-cCCCceeee
Q 023193 249 LAELEQMSLSENK-LQGMIINFLQFY-SSSACFCIR 282 (286)
Q Consensus 249 l~~L~~L~l~~n~-l~~~~~~~l~~l-~~l~~l~l~ 282 (286)
++|+.|++++|+ +++..+..++.+ ++++.+++.
T Consensus 179 -~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp -CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred -CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 899999999995 998888999999 889888765
No 69
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=2.9e-22 Score=183.74 Aligned_cols=162 Identities=25% Similarity=0.311 Sum_probs=91.8
Q ss_pred cCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCcc--CCccccCCCCCCEEEeecCCCCCCCchhhhcCCCC
Q 023193 102 GNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGA--FPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPF 179 (286)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 179 (286)
..+++|++|++++|.+.+..|..+..+++|++|++++|++++. .|..+..+++|++|++++|.+++.+|...+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 4455566666666666555555566666666666666666542 23445556666666666666654355554455566
Q ss_pred ccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEeccc
Q 023193 180 LEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSE 259 (286)
Q Consensus 180 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 259 (286)
|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence 66666666666554444333 45666666666665 3444444566666666666666632222355666666666666
Q ss_pred Ccccccc
Q 023193 260 NKLQGMI 266 (286)
Q Consensus 260 n~l~~~~ 266 (286)
|++++..
T Consensus 507 N~~~c~c 513 (562)
T 3a79_B 507 NPWDCTC 513 (562)
T ss_dssp CCBCCCH
T ss_pred CCcCCCc
Confidence 6665543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=8.4e-23 Score=183.98 Aligned_cols=195 Identities=22% Similarity=0.205 Sum_probs=155.4
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCch----------------hhhcCCCCcEEEccCCCCCcc
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPS----------------AIFGTYTLKYVNFRENQLSGA 144 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~~~~l~~L~~L~l~~n~l~~~ 144 (286)
.+++.|++++|.+++..| +..+++|++|++++|.+.+..+. ....+++|++|++++|.+++.
T Consensus 58 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~ 135 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135 (487)
T ss_dssp TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSG
T ss_pred CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCC
Confidence 556777777777765444 66666666666666655422110 012357899999999999988
Q ss_pred CCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcC
Q 023193 145 FPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGN 224 (286)
Q Consensus 145 ~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 224 (286)
.|..+..+++|++|++++|.+++..|..++..+++|++|++++|.+++. |. ...+++|++|++++|.+++..| .+..
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~ 212 (487)
T 3oja_A 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQS 212 (487)
T ss_dssp GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGG
T ss_pred CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcC
Confidence 8889999999999999999999767777755799999999999999865 32 4468999999999999997544 5889
Q ss_pred CcccceeecccccCCCCchhhhcCCCCCCEEecccCccc-ccchHHHhhccCCCceee
Q 023193 225 LNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQ-GMIINFLQFYSSSACFCI 281 (286)
Q Consensus 225 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~l~~l~l 281 (286)
+++|+.|+|++|.+++ +|..+..+++|+.|++++|+++ +.+|.++..++++..+.+
T Consensus 213 l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 9999999999999995 7778999999999999999998 788888888877665544
No 71
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=2.6e-21 Score=157.38 Aligned_cols=164 Identities=23% Similarity=0.282 Sum_probs=130.3
Q ss_pred CCCCCCCCCceeeEecCCCCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCC
Q 023193 62 WNTRTLVCNWTGVTCDVHSHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQL 141 (286)
Q Consensus 62 w~~~~~~c~~~g~~c~~~~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 141 (286)
|......|.|.++.|.. +.++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+
T Consensus 12 ~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 66677889999998854 2333 4444333 7888999999998887788888888999999999988
Q ss_pred CccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchh
Q 023193 142 SGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKE 221 (286)
Q Consensus 142 ~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~ 221 (286)
+...+..+..+++|++|++++|.++ .++...+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 7666666788888899999888887 666666678888888888888888 67777888888888888888888766667
Q ss_pred hcCCcccceeecccccCCCCc
Q 023193 222 IGNLNKLKRLYLGRNRLQGEI 242 (286)
Q Consensus 222 ~~~l~~L~~L~L~~n~l~~~~ 242 (286)
+..+++|+.|++++|.+....
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTTB
T ss_pred HhCCCCCCEEEeeCCCccCCc
Confidence 788888888888888887544
No 72
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=3.3e-21 Score=172.79 Aligned_cols=185 Identities=25% Similarity=0.371 Sum_probs=129.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+.+..+ ++.+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 272 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence 455666666666654433 55566666666666666532 346667777777777777765444 667777777777
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
++|.++ .++. +..+++|++|++++|.+++..+ +..+++|++|++++|++++..| +..+++|++|++++|.+++
T Consensus 273 ~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 273 GANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 777776 3443 3667778888888887775433 6677788888888888876554 5677888888888888876
Q ss_pred CchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
. ..+..+++|+.|++++|++++..| +..+++++.+++.
T Consensus 346 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 346 V--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred c--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence 4 357778888888888888888776 7777777777654
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.9e-21 Score=164.04 Aligned_cols=171 Identities=25% Similarity=0.335 Sum_probs=149.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. + .+..+++|++|++
T Consensus 63 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEEC
Confidence 779999999999986444 99999999999999999853 4688999999999999999864 3 3889999999999
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
++|.++ .++. +..+++|++|++++|.+++. +. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 137 ~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 137 DLNQIT-NISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CSSCCC-CCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred CCCccC-cCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence 999998 4554 47899999999999999854 33 8899999999999999996544 7889999999999999996
Q ss_pred CchhhhcCCCCCCEEecccCcccccc
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQGMI 266 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~~~ 266 (286)
..+ +..+++|+.|++++|++++..
T Consensus 210 ~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 210 VSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred ccc--ccCCCCCCEEEccCCeeecCC
Confidence 654 889999999999999998743
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=6.3e-23 Score=176.10 Aligned_cols=200 Identities=18% Similarity=0.164 Sum_probs=128.1
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCcc-CchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEE
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGS-IPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLD 159 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 159 (286)
..++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4466677777766655444 45667777777777776644 566666777777777777777666666666777777777
Q ss_pred eecC-CCCCC-CchhhhcCCCCccEeeeecc-ccCCC-CCccCcCCC-CcceEecccC--CCc-cccchhhcCCccccee
Q 023193 160 FAHN-TLSDE-IPANICSNLPFLEILSLSQN-MFHGG-IPSTLSNCT-YLQKLSLPYN--DFS-GAIPKEIGNLNKLKRL 231 (286)
Q Consensus 160 L~~n-~l~~~-l~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~~~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L 231 (286)
+++| .+++. ++. .+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|
T Consensus 149 L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred CCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 7777 55532 333 2356677777777777 66543 455566666 7777777777 444 3455556666777777
Q ss_pred eccccc-CCCCchhhhcCCCCCCEEecccCc-ccccchHHHhhccCCCceeee
Q 023193 232 YLGRNR-LQGEIPQEFGNLAELEQMSLSENK-LQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 232 ~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~l~~l~l~ 282 (286)
++++|. +++..+..+..+++|++|++++|. ++......++++++|+.+++.
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 777776 555566666777777777777774 433333456666666666554
No 75
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1.1e-20 Score=162.97 Aligned_cols=193 Identities=23% Similarity=0.324 Sum_probs=148.2
Q ss_pred CCCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEE
Q 023193 79 HSHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLL 158 (286)
Q Consensus 79 ~~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 158 (286)
...+++.|++++|.+.+. +. +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 108 ~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L 182 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182 (347)
T ss_dssp TCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred CCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence 347899999999999854 33 899999999999999766444 448888889999998888875433 6677777777
Q ss_pred EeecCCCCCCCchh--------------------hhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCcccc
Q 023193 159 DFAHNTLSDEIPAN--------------------ICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAI 218 (286)
Q Consensus 159 ~L~~n~l~~~l~~~--------------------~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~ 218 (286)
++++|.++ .++.. .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 183 ~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 183 SLNYNQIE-DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp ECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred EccCCccc-ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence 77777775 33320 02456677777777777764333 67777888888888887753
Q ss_pred chhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeeee
Q 023193 219 PKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 219 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
..+..+++|++|++++|.+++. +.+..+++|+.|++++|++++..+..++.+++++.+++..
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 3577888899999999988864 4588889999999999999999999999999999888764
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4e-22 Score=169.43 Aligned_cols=180 Identities=18% Similarity=0.223 Sum_probs=151.5
Q ss_pred CCcEEEEEeCCCCCcccCc----hhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCcc--C--CccccC
Q 023193 80 SHRVTILNISRLNLTGTIP----SQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGA--F--PSLIFN 151 (286)
Q Consensus 80 ~~~l~~l~l~~~~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--p~~~~~ 151 (286)
..+++.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 3678899999999987544 4456799999999999999988888999999999999999998642 2 233468
Q ss_pred CCCCCEEEeecCCCCCCCchh---hhcCCCCccEeeeeccccCCCCCccCcCC---CCcceEecccCCCccccchhhcCC
Q 023193 152 KSSLQLLDFAHNTLSDEIPAN---ICSNLPFLEILSLSQNMFHGGIPSTLSNC---TYLQKLSLPYNDFSGAIPKEIGNL 225 (286)
Q Consensus 152 l~~L~~L~L~~n~l~~~l~~~---~~~~l~~L~~L~l~~n~l~~~~p~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l 225 (286)
+++|++|++++|.++ .++.. ++..+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+.
T Consensus 196 l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-- 271 (310)
T 4glp_A 196 FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-- 271 (310)
T ss_dssp SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--
T ss_pred CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--
Confidence 899999999999997 45543 45778999999999999998878887776 69999999999999 5676664
Q ss_pred cccceeecccccCCCCchhhhcCCCCCCEEecccCccccc
Q 023193 226 NKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265 (286)
Q Consensus 226 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 265 (286)
++|++|+|++|.+++. |. +..+++|+.|++++|++++.
T Consensus 272 ~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSCC
T ss_pred CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCCC
Confidence 7999999999999964 32 67889999999999999864
No 77
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.87 E-value=1.5e-21 Score=169.40 Aligned_cols=176 Identities=27% Similarity=0.254 Sum_probs=150.7
Q ss_pred EEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhh-cCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecC
Q 023193 85 ILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIF-GTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHN 163 (286)
Q Consensus 85 ~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 163 (286)
.++++++.++ .+|..+. ..++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5677778777 4665443 4689999999999977777777 8999999999999999888888999999999999999
Q ss_pred CCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhh---cCCcccceeecccccCCC
Q 023193 164 TLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEI---GNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 164 ~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~ 240 (286)
.++ .++...|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+ ..+++|+.|+|++|.+++
T Consensus 99 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 998 6777767899999999999999998888899999999999999999997555555 568999999999999998
Q ss_pred CchhhhcCCCC--CCEEecccCcccc
Q 023193 241 EIPQEFGNLAE--LEQMSLSENKLQG 264 (286)
Q Consensus 241 ~~~~~~~~l~~--L~~L~l~~n~l~~ 264 (286)
..+..+..++. ++.|++++|++..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 77788888887 4889999999864
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=3.9e-22 Score=170.03 Aligned_cols=195 Identities=23% Similarity=0.209 Sum_probs=127.5
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCc-------------
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPS------------- 147 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~------------- 147 (286)
.+++.|++++|.+++..|..|.++++|++|++++|.+.+..+ +..+++|++|++++|.+++..+.
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l 111 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCcc
Confidence 579999999999998888899999999999999999986554 88999999999999988743211
Q ss_pred ---cccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccC-cCCCCcceEecccCCCccccchhhc
Q 023193 148 ---LIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTL-SNCTYLQKLSLPYNDFSGAIPKEIG 223 (286)
Q Consensus 148 ---~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~~~~L~~L~l~~n~l~~~~~~~~~ 223 (286)
....+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. ..
T Consensus 112 ~~~~~~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~ 188 (317)
T 3o53_A 112 SRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QV 188 (317)
T ss_dssp SEEEECCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CC
T ss_pred CCcCccccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-cc
Confidence 0112344555555555554 2333223455566666666666655444444 2455666666666666543 21 22
Q ss_pred CCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 224 NLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 224 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
.+++|++|++++|.+++. |..+..+++|+.|++++|++++ +|..+..+++++.+++.
T Consensus 189 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR 245 (317)
T ss_dssp CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECT
T ss_pred ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEcc
Confidence 356667777777776643 3346667777777777777763 45556666666666654
No 79
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.9e-21 Score=180.14 Aligned_cols=197 Identities=20% Similarity=0.163 Sum_probs=144.9
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
..++.|||++|.|++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46788888888888777778888888888888888888666777888888888888888888666677888888888888
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCC-CCCccCcCCCCcceEecccCCCccccchhhcCCcccc----eeeccc
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHG-GIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLK----RLYLGR 235 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~L~~ 235 (286)
++|+++ .++...|+.+++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.+++ .++++.
T Consensus 132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 888887 5666555788888888888888865 4567778888888888888888877776665554433 567778
Q ss_pred ccCCCCchhhhcCCCCCCEEecccCcccccc-hHHHhhccCCCce
Q 023193 236 NRLQGEIPQEFGNLAELEQMSLSENKLQGMI-INFLQFYSSSACF 279 (286)
Q Consensus 236 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~l~~l 279 (286)
|.++...+..+. ...++.+++.+|..+..+ +..+..+..++..
T Consensus 211 n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 211 NPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp CCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred CcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccc
Confidence 887754444333 344567777777655433 3455555555433
No 80
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.5e-21 Score=178.05 Aligned_cols=168 Identities=26% Similarity=0.373 Sum_probs=111.2
Q ss_pred cEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEee
Q 023193 82 RVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFA 161 (286)
Q Consensus 82 ~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 161 (286)
+++.|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|+++
T Consensus 81 ~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 81 QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINAD 148 (571)
T ss_dssp TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCC
Confidence 3445555555554 333 234555666666665553 444 333 56666666666664 343 45667777777
Q ss_pred cCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCccc-------ceeecc
Q 023193 162 HNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKL-------KRLYLG 234 (286)
Q Consensus 162 ~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~L~ 234 (286)
+|.++ .+|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|+|+
T Consensus 149 ~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 149 NNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp SSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred CCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence 77776 3554 35677788888887774 555 54 77888888888887 4555 443 66 888999
Q ss_pred cccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccC
Q 023193 235 RNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSS 275 (286)
Q Consensus 235 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 275 (286)
+|.|+ .+|..+..+++|+.|++++|++++.+|..+..+..
T Consensus 216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 99888 56777777899999999999999999988888755
No 81
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=4.6e-21 Score=154.89 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=131.0
Q ss_pred EEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCc-hhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecC
Q 023193 85 ILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIP-SAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHN 163 (286)
Q Consensus 85 ~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 163 (286)
.++++++.++ .+|..+. ..+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5777888887 4665543 457899999999986644 45789999999999999999888888999999999999999
Q ss_pred CCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCch
Q 023193 164 TLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIP 243 (286)
Q Consensus 164 ~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 243 (286)
.++ .++...+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|.++...+
T Consensus 92 ~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 998 5666666889999999999999998888889999999999999999998878888999999999999999886443
No 82
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=5.7e-21 Score=154.36 Aligned_cols=151 Identities=22% Similarity=0.267 Sum_probs=128.7
Q ss_pred EEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCC
Q 023193 86 LNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTL 165 (286)
Q Consensus 86 l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 165 (286)
+++++++++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|++++..|..|..+++|++|++++|.+
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 455566666 4555443 6899999999999877777888999999999999999988888999999999999999999
Q ss_pred CCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 166 SDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 166 ~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
+ .+|...|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 93 ~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred C-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8 7888777889999999999999988888888899999999999999987777778888899999999998864
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=4.9e-21 Score=161.32 Aligned_cols=175 Identities=26% Similarity=0.373 Sum_probs=149.7
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.++++++.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +.+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEEC
Confidence 5688999999999854 3 48899999999999999986544 88999999999999999853 34889999999999
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
++|.++ .++ .+ ..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 120 ~~n~i~-~~~-~l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 120 EHNGIS-DIN-GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TTSCCC-CCG-GG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCcCC-CCh-hh-cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 999998 453 34 7899999999999999854 578899999999999999997655 8899999999999999996
Q ss_pred CchhhhcCCCCCCEEecccCcccccchHHH
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQGMIINFL 270 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 270 (286)
++ .+..+++|+.|++++|+++......+
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~~~~~~~ 220 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLNKPINHQ 220 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEECCCEECC
T ss_pred -Ch-hhccCCCCCEEECcCCcccCCccccc
Confidence 44 48899999999999999987554443
No 84
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=1e-20 Score=153.87 Aligned_cols=156 Identities=21% Similarity=0.293 Sum_probs=140.2
Q ss_pred CCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeee
Q 023193 107 LQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLS 186 (286)
Q Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~ 186 (286)
-+.++.+++.+. .+|..+ .++|++|++++|.+++..|..+..+++|++|++++|.++ .++...|..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence 467888888887 666654 388999999999999988999999999999999999997 7887777899999999999
Q ss_pred ccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccc
Q 023193 187 QNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMI 266 (286)
Q Consensus 187 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 266 (286)
+|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|+|++|.+++..+..+..+++|+.|++++|++++..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99999777777899999999999999999 67888899999999999999999887888999999999999999998765
Q ss_pred h
Q 023193 267 I 267 (286)
Q Consensus 267 ~ 267 (286)
+
T Consensus 176 ~ 176 (229)
T 3e6j_A 176 R 176 (229)
T ss_dssp G
T ss_pred c
Confidence 3
No 85
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=1.9e-20 Score=167.87 Aligned_cols=186 Identities=27% Similarity=0.313 Sum_probs=144.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
..++.|++++|.+.+. +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence 5577788888877643 337778888888888888775544 66788888888888888753 35677888888888
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
++|.+++ ++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 251 ~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 251 ANNQISN-LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp CSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred CCCcccc-chh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 8888874 333 4778888888888888875443 7788889999999998886544 6788889999999999887
Q ss_pred CchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeeee
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
..| +..+++|+.|++++|++++. +.++.+++++.++++.
T Consensus 324 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 324 ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGH 362 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCC
Confidence 665 77888999999999998876 4688888888887654
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.5e-21 Score=168.78 Aligned_cols=212 Identities=15% Similarity=0.093 Sum_probs=163.9
Q ss_pred CCCCceeeEecCC---------CCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCc-hhhhcCCCCcE-EE
Q 023193 67 LVCNWTGVTCDVH---------SHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIP-SAIFGTYTLKY-VN 135 (286)
Q Consensus 67 ~~c~~~g~~c~~~---------~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~ 135 (286)
+.|.+..|.|... ..+++.|++++|.|+...+..|.++++|++|++++|.+.+.++ ..|.+++++++ +.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 4477788888632 1468999999999996666789999999999999999876655 46788888775 66
Q ss_pred ccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeec-cccCCCCCccCcCCC-CcceEecccCC
Q 023193 136 FRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQ-NMFHGGIPSTLSNCT-YLQKLSLPYND 213 (286)
Q Consensus 136 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~~~-~L~~L~l~~n~ 213 (286)
+..|+++...|..+..+++|++|++++|.++ .++...+....++..+++.+ +.+....+..+..+. .++.|++++|+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 7789999888889999999999999999998 56665556677788888876 456644455666654 68899999999
Q ss_pred CccccchhhcCCcccceeeccc-ccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCcee
Q 023193 214 FSGAIPKEIGNLNKLKRLYLGR-NRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFC 280 (286)
Q Consensus 214 l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~ 280 (286)
++. +|.......+++++++.+ |.++...+.+|..+++|++||+++|+++...+..+..+++|..++
T Consensus 166 i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 166 IQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 232 (350)
T ss_dssp CCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTT
T ss_pred ccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhcc
Confidence 985 444444557899999975 666655556789999999999999999877666666665555433
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3e-22 Score=175.31 Aligned_cols=202 Identities=17% Similarity=0.218 Sum_probs=132.2
Q ss_pred CcEEEEEeCCCC---CcccCchhc-------cCCCCCCEEEcccCCCCc----cCchhhhcCCCCcEEEccCCCCCccCC
Q 023193 81 HRVTILNISRLN---LTGTIPSQL-------GNLSSLQSLDLSFNQLSG----SIPSAIFGTYTLKYVNFRENQLSGAFP 146 (286)
Q Consensus 81 ~~l~~l~l~~~~---i~~~~~~~~-------~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p 146 (286)
.+++.|+++++. +++.+|..+ ..+++|++|++++|.+.+ .++..+..+++|++|++++|.+++..+
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 567777777753 334444443 567777777777777775 356667777777777777777754333
Q ss_pred cccc----CC---------CCCCEEEeecCCCC-CCCch--hhhcCCCCccEeeeeccccCC-----CCCccCcCCCCcc
Q 023193 147 SLIF----NK---------SSLQLLDFAHNTLS-DEIPA--NICSNLPFLEILSLSQNMFHG-----GIPSTLSNCTYLQ 205 (286)
Q Consensus 147 ~~~~----~l---------~~L~~L~L~~n~l~-~~l~~--~~~~~l~~L~~L~l~~n~l~~-----~~p~~~~~~~~L~ 205 (286)
..+. .+ ++|++|++++|.++ +.++. ..+..+++|++|++++|.++. ..+..+..+++|+
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~ 219 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc
Confidence 3332 22 67777777777776 22332 223566777777777777762 2333666777777
Q ss_pred eEecccCCCc----cccchhhcCCcccceeecccccCCCC----chhhhcC--CCCCCEEecccCcccc----cchHHH-
Q 023193 206 KLSLPYNDFS----GAIPKEIGNLNKLKRLYLGRNRLQGE----IPQEFGN--LAELEQMSLSENKLQG----MIINFL- 270 (286)
Q Consensus 206 ~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~~~~l- 270 (286)
+|++++|.++ +.+|..+..+++|++|+|++|.+++. ++..+.. +++|+.|++++|.+++ .+|..+
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 7777777775 45666677777777777777777754 4555533 7777777887777777 466666
Q ss_pred hhccCCCceeee
Q 023193 271 QFYSSSACFCIR 282 (286)
Q Consensus 271 ~~l~~l~~l~l~ 282 (286)
.++++|+.+++.
T Consensus 300 ~~l~~L~~L~l~ 311 (386)
T 2ca6_A 300 EKMPDLLFLELN 311 (386)
T ss_dssp HHCTTCCEEECT
T ss_pred hcCCCceEEEcc
Confidence 556777776654
No 88
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=8e-21 Score=153.49 Aligned_cols=153 Identities=23% Similarity=0.240 Sum_probs=136.3
Q ss_pred CEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeec
Q 023193 108 QSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQ 187 (286)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~ 187 (286)
+.++.+++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.++ .++...|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCC
Confidence 57888999887 5666543 68999999999999888888999999999999999998 45444458999999999999
Q ss_pred cccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccc
Q 023193 188 NMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQG 264 (286)
Q Consensus 188 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 264 (286)
|.++...+..|..+++|++|++++|.+++..|..+..+++|++|+|++|.+++..+..+..+++|+.|++++|+++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99996666678899999999999999998888999999999999999999998888889999999999999999864
No 89
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=6.3e-21 Score=176.57 Aligned_cols=182 Identities=21% Similarity=0.225 Sum_probs=155.7
Q ss_pred EeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCC
Q 023193 87 NISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLS 166 (286)
Q Consensus 87 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 166 (286)
+-++.+++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|+|++|+++
T Consensus 37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 33444555 4565442 47999999999999777789999999999999999999888888999999999999999998
Q ss_pred CCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCcc-ccchhhcCCcccceeecccccCCCCchhh
Q 023193 167 DEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSG-AIPKEIGNLNKLKRLYLGRNRLQGEIPQE 245 (286)
Q Consensus 167 ~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 245 (286)
.+|...|..+++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+..
T Consensus 114 -~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 114 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp -EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred -CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 7888878999999999999999997777789999999999999999976 46788899999999999999999888887
Q ss_pred hcCCCCC----CEEecccCcccccchHHHhh
Q 023193 246 FGNLAEL----EQMSLSENKLQGMIINFLQF 272 (286)
Q Consensus 246 ~~~l~~L----~~L~l~~n~l~~~~~~~l~~ 272 (286)
+..+.++ ..++++.|.++...+..+..
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~ 223 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 223 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccccc
Confidence 7766544 47899999998877665544
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=6.1e-23 Score=176.20 Aligned_cols=210 Identities=18% Similarity=0.295 Sum_probs=177.3
Q ss_pred CCCCceeeEecCCCCcEEEEEeCCCCCcccCchhccCC--CCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCcc
Q 023193 67 LVCNWTGVTCDVHSHRVTILNISRLNLTGTIPSQLGNL--SSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGA 144 (286)
Q Consensus 67 ~~c~~~g~~c~~~~~~l~~l~l~~~~i~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 144 (286)
.+..|.++.++. ...+.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+++.
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 344688877753 34678999998876 4556666 8999999999999876655 56799999999999999865
Q ss_pred -CCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeecc-ccCC-CCCccCcCCCCcceEecccC-CCccc-cc
Q 023193 145 -FPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQN-MFHG-GIPSTLSNCTYLQKLSLPYN-DFSGA-IP 219 (286)
Q Consensus 145 -~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n-~l~~-~~p~~~~~~~~L~~L~l~~n-~l~~~-~~ 219 (286)
++..+..+++|++|++++|.+++..+..+ ..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 78888999999999999999986666666 77999999999999 6775 36677888999999999999 99864 57
Q ss_pred hhhcCCc-ccceeecccc--cCC-CCchhhhcCCCCCCEEecccCc-ccccchHHHhhccCCCceeeee
Q 023193 220 KEIGNLN-KLKRLYLGRN--RLQ-GEIPQEFGNLAELEQMSLSENK-LQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 220 ~~~~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
..+..++ +|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..++.+++|+.+++..
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 7788899 9999999999 566 4678888899999999999999 8889999999999999988754
No 91
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=3.1e-20 Score=150.01 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=96.7
Q ss_pred CEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCC-ccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeee
Q 023193 108 QSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFP-SLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLS 186 (286)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~ 186 (286)
+.+++++|.++ .+|..+ ...+++|++++|.+++..+ ..+..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence 35666666665 344433 2345666666666665533 33566666666766666666 4444444666666666666
Q ss_pred ccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCccccc
Q 023193 187 QNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGM 265 (286)
Q Consensus 187 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 265 (286)
+|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+|++|.+++..|..+..+++|+.|++++|++++.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 6666655555666666666667666666666666666666666666766666666666666666666666766666543
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=8.6e-22 Score=170.96 Aligned_cols=202 Identities=21% Similarity=0.205 Sum_probs=118.3
Q ss_pred CcEEEEEeCCCCCcccCc----hhccCCC-CCCEEEcccCCCCccCchhhhcC-----CCCcEEEccCCCCCccCCcccc
Q 023193 81 HRVTILNISRLNLTGTIP----SQLGNLS-SLQSLDLSFNQLSGSIPSAIFGT-----YTLKYVNFRENQLSGAFPSLIF 150 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~ 150 (286)
..++.|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 346777777777765544 5566666 67777777777765555555554 6777777777777655554332
Q ss_pred ----CC-CCCCEEEeecCCCCCCCchhh---hcC-CCCccEeeeeccccCCCCC----ccCcCCC-CcceEecccCCCcc
Q 023193 151 ----NK-SSLQLLDFAHNTLSDEIPANI---CSN-LPFLEILSLSQNMFHGGIP----STLSNCT-YLQKLSLPYNDFSG 216 (286)
Q Consensus 151 ----~l-~~L~~L~L~~n~l~~~l~~~~---~~~-l~~L~~L~l~~n~l~~~~p----~~~~~~~-~L~~L~l~~n~l~~ 216 (286)
.+ ++|++|++++|.+++..+..+ +.. ..+|++|++++|.+++..+ ..+...+ +|++|++++|++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 33 667777777777763333222 122 2467777777777664322 2233343 67777777777765
Q ss_pred ccchhh----cCC-cccceeecccccCCCC----chhhhcC-CCCCCEEecccCcccccchHHH----hhccCCCceeee
Q 023193 217 AIPKEI----GNL-NKLKRLYLGRNRLQGE----IPQEFGN-LAELEQMSLSENKLQGMIINFL----QFYSSSACFCIR 282 (286)
Q Consensus 217 ~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~~~~l----~~l~~l~~l~l~ 282 (286)
..+..+ ... ++|++|+|++|.+++. ++..+.. .++|++|++++|++++..+..+ ..+++++.+++.
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 554333 233 4677777777776652 3444444 3467777777777766555333 333555555543
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=4.4e-22 Score=174.20 Aligned_cols=203 Identities=16% Similarity=0.242 Sum_probs=164.2
Q ss_pred CcEEEEEeCCCCCccc----CchhccCCCCCCEEEcccCC---CCccCchhh-------hcCCCCcEEEccCCCCCc---
Q 023193 81 HRVTILNISRLNLTGT----IPSQLGNLSSLQSLDLSFNQ---LSGSIPSAI-------FGTYTLKYVNFRENQLSG--- 143 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~----~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~l~~n~l~~--- 143 (286)
.+++.|++++|.+.+. ++..+..+++|++|++++|. +.+.+|..+ ..+++|++|++++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 5689999999999865 34457789999999999964 445556555 688999999999999987
Q ss_pred -cCCccccCCCCCCEEEeecCCCCCCCchhhh---cCC---------CCccEeeeeccccC-CCCC---ccCcCCCCcce
Q 023193 144 -AFPSLIFNKSSLQLLDFAHNTLSDEIPANIC---SNL---------PFLEILSLSQNMFH-GGIP---STLSNCTYLQK 206 (286)
Q Consensus 144 -~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~---~~l---------~~L~~L~l~~n~l~-~~~p---~~~~~~~~L~~ 206 (286)
.+|..+..+++|++|++++|.+++..+..+. ..+ ++|++|++++|+++ +..+ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 4777888999999999999999633232221 223 89999999999997 3444 46678889999
Q ss_pred EecccCCCcc-----ccchhhcCCcccceeecccccCC----CCchhhhcCCCCCCEEecccCccccc----chHHHhh-
Q 023193 207 LSLPYNDFSG-----AIPKEIGNLNKLKRLYLGRNRLQ----GEIPQEFGNLAELEQMSLSENKLQGM----IINFLQF- 272 (286)
Q Consensus 207 L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~- 272 (286)
|++++|.++. ..+..+..+++|++|+|++|.++ +.+|..+..+++|++|++++|.+++. ++..+..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999999983 34447788999999999999996 57888999999999999999999987 5666644
Q ss_pred -ccCCCceeeee
Q 023193 273 -YSSSACFCIRS 283 (286)
Q Consensus 273 -l~~l~~l~l~~ 283 (286)
+++|+.+++..
T Consensus 272 ~~~~L~~L~L~~ 283 (386)
T 2ca6_A 272 ENIGLQTLRLQY 283 (386)
T ss_dssp SSCCCCEEECCS
T ss_pred cCCCeEEEECcC
Confidence 88888888764
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2.1e-20 Score=170.38 Aligned_cols=191 Identities=24% Similarity=0.387 Sum_probs=157.5
Q ss_pred CCCCCCCC-----Cceee-EecCCCCcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEE
Q 023193 62 WNTRTLVC-----NWTGV-TCDVHSHRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVN 135 (286)
Q Consensus 62 w~~~~~~c-----~~~g~-~c~~~~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (286)
|.....+| .|.++ .|.. .+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 65555667 68888 6753 579999999999986 77655 378999999999998 667 4578999999
Q ss_pred ccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCc
Q 023193 136 FRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFS 215 (286)
Q Consensus 136 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 215 (286)
+++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.++
T Consensus 107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 99999997 666 655 99999999999984 776 58999999999999985 665 5789999999999999
Q ss_pred cccchhhcCCcccceeecccccCCCCchhhhcCCCCC-------CEEecccCcccccchHHHhhccCCCceeeee
Q 023193 216 GAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAEL-------EQMSLSENKLQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 216 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
+ +|. +. ++|+.|+|++|.|+ .+|. +.. +| +.|++++|+++. +|..+..+++++.+++..
T Consensus 174 ~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 174 F-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILED 239 (571)
T ss_dssp C-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCS
T ss_pred C-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeC
Confidence 7 666 55 89999999999999 5555 554 67 999999999985 777788899998888753
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=3.7e-20 Score=155.87 Aligned_cols=179 Identities=20% Similarity=0.266 Sum_probs=150.3
Q ss_pred eCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCC
Q 023193 88 ISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSD 167 (286)
Q Consensus 88 l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 167 (286)
+....+.+..+ +..+++|+.|++++|.+... +.+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 31 l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~- 103 (291)
T 1h6t_A 31 LKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK- 103 (291)
T ss_dssp TTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred hcCCCcccccc--hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-
Confidence 34444443322 45678999999999999743 358889999999999999996555 889999999999999998
Q ss_pred CCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhc
Q 023193 168 EIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFG 247 (286)
Q Consensus 168 ~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 247 (286)
.++. +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +.
T Consensus 104 ~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 104 DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp CGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence 4554 48899999999999999853 4688899999999999999965 578899999999999999997655 89
Q ss_pred CCCCCCEEecccCcccccchHHHhhccCCCceeeee
Q 023193 248 NLAELEQMSLSENKLQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 248 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
.+++|+.|++++|.+++. + .+..+++|+.+++..
T Consensus 176 ~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS 209 (291)
T ss_dssp TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred CCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcC
Confidence 999999999999999875 3 488999999888764
No 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=2.4e-20 Score=161.81 Aligned_cols=170 Identities=24% Similarity=0.258 Sum_probs=146.6
Q ss_pred CEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCcccc-CCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeee
Q 023193 108 QSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIF-NKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLS 186 (286)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~ 186 (286)
+.++++++.+. .+|..+ ...+++|++++|++++..+..+. .+++|++|++++|.++ .++...|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 67899999987 567654 34689999999999988777787 9999999999999998 6766666899999999999
Q ss_pred ccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhh---cCCCCCCEEecccCccc
Q 023193 187 QNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEF---GNLAELEQMSLSENKLQ 263 (286)
Q Consensus 187 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~ 263 (286)
+|++++..+..|..+++|++|++++|++++..|..+..+++|+.|+|++|.+++..+..+ ..+++|+.|++++|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999997777789999999999999999998888999999999999999999997666666 57899999999999999
Q ss_pred ccchHHHhhccCC--Cceee
Q 023193 264 GMIINFLQFYSSS--ACFCI 281 (286)
Q Consensus 264 ~~~~~~l~~l~~l--~~l~l 281 (286)
+..+..+..++.+ ..+++
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEEC
T ss_pred ccCHHHhhhccHhhcceEEe
Confidence 9888888888763 44443
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=2e-20 Score=172.18 Aligned_cols=178 Identities=25% Similarity=0.363 Sum_probs=151.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|+++++.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++. +.+..+++|++|++
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEe
Confidence 568889999999874 34 58899999999999999986544 88999999999999999853 36889999999999
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
++|.++ .++. + ..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+++
T Consensus 117 s~N~l~-~l~~-l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 117 EHNGIS-DING-L-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp TTSCCC-CCGG-G-GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred cCCCCC-CCcc-c-cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 999998 4543 3 7899999999999999855 678899999999999999997666 8899999999999999996
Q ss_pred CchhhhcCCCCCCEEecccCcccccchHHHhhc
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQGMIINFLQFY 273 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 273 (286)
. +.+..+++|+.|++++|++++.....+..+
T Consensus 190 l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 190 L--RALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp C--GGGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred C--hHHccCCCCCEEEccCCcCcCCcccccccE
Confidence 4 368899999999999999987654444433
No 98
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=9.3e-20 Score=162.81 Aligned_cols=170 Identities=23% Similarity=0.243 Sum_probs=92.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+++. | ++.+++|++|++++|.+.+. + +..+++|++|++++|.+++. | +..+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEEC
Confidence 4455555555555542 2 55555555555555555532 2 44555555555555555532 2 445555555555
Q ss_pred ecCCCCCCCchh-------------------hhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchh
Q 023193 161 AHNTLSDEIPAN-------------------ICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKE 221 (286)
Q Consensus 161 ~~n~l~~~l~~~-------------------~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~ 221 (286)
++|.+++ ++-. .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+++. .
T Consensus 135 ~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~ 207 (457)
T 3bz5_A 135 ARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---D 207 (457)
T ss_dssp TTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---C
T ss_pred CCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---c
Confidence 5555542 2200 01344555555555555553 23 45555666666666666543 2
Q ss_pred hcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHH
Q 023193 222 IGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINF 269 (286)
Q Consensus 222 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 269 (286)
++.+++|++|++++|.+++ +| +..+++|+.|++++|++++..+..
T Consensus 208 l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHH
Confidence 5566667777777777765 34 666677777777777777655433
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=2.7e-20 Score=147.75 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=98.1
Q ss_pred cCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCcc
Q 023193 102 GNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLE 181 (286)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 181 (286)
+.+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+ ..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh-cCCCCCC
Confidence 34556666666666665 344 4666666777777666554 22356666677777777777664344444 5667777
Q ss_pred EeeeeccccCCCCCccCcCCCCcceEecccCC-CccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccC
Q 023193 182 ILSLSQNMFHGGIPSTLSNCTYLQKLSLPYND-FSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSEN 260 (286)
Q Consensus 182 ~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 260 (286)
+|++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 77777777766566666777777777777776 44 344 46677777777777777774 33 5677777888888887
Q ss_pred cccc
Q 023193 261 KLQG 264 (286)
Q Consensus 261 ~l~~ 264 (286)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 7654
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=7.7e-21 Score=164.97 Aligned_cols=199 Identities=18% Similarity=0.178 Sum_probs=158.1
Q ss_pred EEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCc----hhhhcCC-CCcEEEccCCCCCccCCccccCC-----CC
Q 023193 85 ILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIP----SAIFGTY-TLKYVNFRENQLSGAFPSLIFNK-----SS 154 (286)
Q Consensus 85 ~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~ 154 (286)
..+++.+++++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 36788999999888877777789999999999987666 7788898 89999999999998777777664 89
Q ss_pred CCEEEeecCCCCCCCchhh---hcCC-CCccEeeeeccccCCCCCccCc----C-CCCcceEecccCCCccccc----hh
Q 023193 155 LQLLDFAHNTLSDEIPANI---CSNL-PFLEILSLSQNMFHGGIPSTLS----N-CTYLQKLSLPYNDFSGAIP----KE 221 (286)
Q Consensus 155 L~~L~L~~n~l~~~l~~~~---~~~l-~~L~~L~l~~n~l~~~~p~~~~----~-~~~L~~L~l~~n~l~~~~~----~~ 221 (286)
|++|++++|.+++..+..+ +... ++|++|++++|.+++..+..+. . .++|++|++++|.+++..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999985555433 2344 8999999999999876654443 3 3699999999999986443 44
Q ss_pred hcCCc-ccceeecccccCCCCchhhh----cCC-CCCCEEecccCccccc----chHHHhhc-cCCCceeeee
Q 023193 222 IGNLN-KLKRLYLGRNRLQGEIPQEF----GNL-AELEQMSLSENKLQGM----IINFLQFY-SSSACFCIRS 283 (286)
Q Consensus 222 ~~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~~~~l~~l-~~l~~l~l~~ 283 (286)
+...+ +|++|+|++|.+++..+..+ ..+ ++|+.|++++|.+++. ++..+... ++++.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 45555 99999999999998776544 455 5999999999999884 45555553 4788777653
No 101
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=2.2e-19 Score=160.44 Aligned_cols=178 Identities=20% Similarity=0.267 Sum_probs=132.9
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|+++++.+++. | .++.+++|++|++++|.+.+. + +..+++|++|++++|.+++. + +..+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 6789999999999964 5 699999999999999999864 4 88999999999999999975 3 889999999999
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEec----------------------ccCCCcccc
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSL----------------------PYNDFSGAI 218 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l----------------------~~n~l~~~~ 218 (286)
++|.+++ ++ ++.+++|++|++++|.+++. + ++.+++|++|++ ++|++++ +
T Consensus 114 ~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 114 DTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-C
T ss_pred CCCcCCe-ec---CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-e
Confidence 9999984 65 47899999999999998853 2 444444555554 4444443 2
Q ss_pred chhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 219 PKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 219 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
| +..+++|+.|++++|.+++. .++.+++|+.|++++|++++ +| ++.+++++.+++.
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 2 44555566666666666543 25666777777777777776 33 5666666666554
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.82 E-value=2.3e-20 Score=154.92 Aligned_cols=167 Identities=21% Similarity=0.246 Sum_probs=106.5
Q ss_pred EEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecC
Q 023193 84 TILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHN 163 (286)
Q Consensus 84 ~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 163 (286)
+.++++++.+++.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 22 ~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 22 VKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 33445555555322 3556667777777777665 333 56667777777777777765433 667777777777777
Q ss_pred CCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCch
Q 023193 164 TLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIP 243 (286)
Q Consensus 164 ~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 243 (286)
.++ .++... . ++|++|++++|.+++. + .+..+++|++|++++|++++. + .+..+++|++|++++|.+++.
T Consensus 96 ~l~-~l~~~~--~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 96 RLK-NLNGIP--S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CCS-CCTTCC--C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred ccC-CcCccc--c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 776 344422 2 6677777777777642 2 466677777777777777653 3 466667777777777777654
Q ss_pred hhhcCCCCCCEEecccCcccccc
Q 023193 244 QEFGNLAELEQMSLSENKLQGMI 266 (286)
Q Consensus 244 ~~~~~l~~L~~L~l~~n~l~~~~ 266 (286)
..+..+++|+.|++++|++++..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECCC
T ss_pred HHhccCCCCCEEeCCCCcccCCc
Confidence 55666777777777777766553
No 103
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=1.8e-21 Score=183.07 Aligned_cols=228 Identities=19% Similarity=0.188 Sum_probs=95.2
Q ss_pred CCHHhHHHHHHHHHhcCCCCCccccCCCCC-CCCCCCceeeEecCCCCcEEEEEeCCCCCcccCchhccCCCCCCEEE--
Q 023193 35 TTTADQDGLLALKAHITHDPTNFLAKNWNT-RTLVCNWTGVTCDVHSHRVTILNISRLNLTGTIPSQLGNLSSLQSLD-- 111 (286)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~-~~~~c~~~g~~c~~~~~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~-- 111 (286)
....+..++.++...........-. .|.. ....+.|.+..+.. .+++.+++.++.+.. .+..+.....|..+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~ 204 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQ-QPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYSID 204 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccC-CCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCccccc
Confidence 3455667777777665322221111 2432 23455677766644 566777776666653 222222222222222
Q ss_pred ---cccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeecc
Q 023193 112 ---LSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQN 188 (286)
Q Consensus 112 ---l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n 188 (286)
+..|.+. ..+..+..+++|++|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+ ..+++|++|+|++|
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHN 280 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTS
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCC
Confidence 2222222 33555666666666666666666 45555556666666666666665 566555 55666666666666
Q ss_pred ccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCC-CCEEecccCcccccch
Q 023193 189 MFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAE-LEQMSLSENKLQGMII 267 (286)
Q Consensus 189 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~ 267 (286)
.++ .+|..++.+++|++|+|++|.++ .+|..++.+++|++|+|++|.+++.+|..+..+.. ...+++++|.+++.+|
T Consensus 281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 281 RLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred cCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 666 55666666666666666666665 45555666666666666666666666655543321 1234555565555555
Q ss_pred HHHhh
Q 023193 268 NFLQF 272 (286)
Q Consensus 268 ~~l~~ 272 (286)
..+..
T Consensus 359 ~~l~~ 363 (727)
T 4b8c_D 359 HERRF 363 (727)
T ss_dssp CC---
T ss_pred cccce
Confidence 54443
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=2.1e-19 Score=165.35 Aligned_cols=181 Identities=20% Similarity=0.284 Sum_probs=152.5
Q ss_pred EEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCC
Q 023193 86 LNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTL 165 (286)
Q Consensus 86 l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 165 (286)
+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|+.|+|++|.+
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 3444455554333 4678899999999999873 44 68899999999999999997655 88999999999999999
Q ss_pred CCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhh
Q 023193 166 SDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQE 245 (286)
Q Consensus 166 ~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 245 (286)
+ .++ .+ ..+++|++|++++|.+.+. +.+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..|
T Consensus 100 ~-~l~-~l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 100 K-DLS-SL-KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp C-CCT-TS-TTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred C-CCh-hh-ccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--
Confidence 8 455 34 7899999999999999853 4588999999999999999965 578899999999999999997766
Q ss_pred hcCCCCCCEEecccCcccccchHHHhhccCCCceeeee
Q 023193 246 FGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 246 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
+..+++|+.|+|++|++++. +.+..+++|+.+++..
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS 206 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCS
T ss_pred hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccC
Confidence 89999999999999999985 4688999999888753
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=7.8e-19 Score=139.33 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=132.1
Q ss_pred hhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCc
Q 023193 125 IFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYL 204 (286)
Q Consensus 125 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L 204 (286)
...+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ .+ ..+++|++|++++|.+++..+..++.+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hh-hcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 367889999999999998 555 6889999999999999886 443 44 789999999999999998788899999999
Q ss_pred ceEecccCCCccccchhhcCCcccceeeccccc-CCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeeee
Q 023193 205 QKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNR-LQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
++|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|++++.. .+..+++|+.+++..
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeC
Confidence 999999999998888899999999999999998 55 555 6899999999999999998744 788999999888753
No 106
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=7.3e-19 Score=138.93 Aligned_cols=132 Identities=21% Similarity=0.226 Sum_probs=101.1
Q ss_pred CEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCc-cccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeee
Q 023193 108 QSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPS-LIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLS 186 (286)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~ 186 (286)
+.+++++|.++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+ ..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECC
Confidence 67888888885 56665433 788888888888766554 37788888888888888874434444 778888888888
Q ss_pred ccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCch
Q 023193 187 QNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIP 243 (286)
Q Consensus 187 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 243 (286)
+|++++..+..+..+++|++|++++|++++..|..+..+++|++|+|++|.+++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 888887777778888888888888888887777788888888888888888876544
No 107
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=1.4e-20 Score=168.23 Aligned_cols=80 Identities=18% Similarity=0.144 Sum_probs=40.7
Q ss_pred CcceEecccCCCccc----cchhhcCCcccceeecccccCCCCchhhhcC-----CCCCCEEecccCcccc----cchHH
Q 023193 203 YLQKLSLPYNDFSGA----IPKEIGNLNKLKRLYLGRNRLQGEIPQEFGN-----LAELEQMSLSENKLQG----MIINF 269 (286)
Q Consensus 203 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~ 269 (286)
+|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 444444444444332 2333344455566666666555443333322 4456666666666654 55566
Q ss_pred HhhccCCCceeee
Q 023193 270 LQFYSSSACFCIR 282 (286)
Q Consensus 270 l~~l~~l~~l~l~ 282 (286)
+..+++|+.++++
T Consensus 394 l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 394 LLANHSLRELDLS 406 (461)
T ss_dssp HHHCCCCCEEECC
T ss_pred HHhCCCccEEECC
Confidence 6666666665554
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=8e-22 Score=180.30 Aligned_cols=121 Identities=24% Similarity=0.323 Sum_probs=108.3
Q ss_pred CCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeec
Q 023193 154 SLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYL 233 (286)
Q Consensus 154 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 233 (286)
.|++|++++|.++ .+|. ++.+++|++|++++|.++ .+|..++.+++|+.|++++|.+++ +| .++.+++|++|+|
T Consensus 442 ~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 5899999999998 5786 488999999999999999 889999999999999999999996 66 8999999999999
Q ss_pred ccccCCCCc-hhhhcCCCCCCEEecccCcccccch---HHHhhccCCCcee
Q 023193 234 GRNRLQGEI-PQEFGNLAELEQMSLSENKLQGMII---NFLQFYSSSACFC 280 (286)
Q Consensus 234 ~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~l~~l~ 280 (286)
++|.+++.. |..++.+++|+.|++++|++++.+| ..+..+++|+.++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 999999887 9999999999999999999998765 3455677777764
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=1.9e-20 Score=167.37 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=32.9
Q ss_pred CcCCCCcceEecccCCCccccchhhcC-----CcccceeecccccCCC----CchhhhcCCCCCCEEecccCcccccc
Q 023193 198 LSNCTYLQKLSLPYNDFSGAIPKEIGN-----LNKLKRLYLGRNRLQG----EIPQEFGNLAELEQMSLSENKLQGMI 266 (286)
Q Consensus 198 ~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~ 266 (286)
+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|++++..
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence 334455555555555554433322221 3455555555555553 34444555555555555555554443
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=1.5e-19 Score=169.92 Aligned_cols=162 Identities=24% Similarity=0.275 Sum_probs=123.9
Q ss_pred EeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCC
Q 023193 87 NISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLS 166 (286)
Q Consensus 87 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 166 (286)
++..+.+. ..+..+..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|+|++|.++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 33333333 45778899999999999999998 78888889999999999999999 88999999999999999999998
Q ss_pred CCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcc-cceeecccccCCCCchhh
Q 023193 167 DEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNK-LKRLYLGRNRLQGEIPQE 245 (286)
Q Consensus 167 ~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~ 245 (286)
.+|..+ ..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+.. ...++|.+|.+++.+|..
T Consensus 284 -~lp~~~-~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 284 -SLPAEL-GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp -SCCSSG-GGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred -ccChhh-cCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 888887 78999999999999997 78888999999999999999999988888765432 335789999999888753
Q ss_pred hcCCCCCCEEecccC
Q 023193 246 FGNLAELEQMSLSEN 260 (286)
Q Consensus 246 ~~~l~~L~~L~l~~n 260 (286)
|+.|++++|
T Consensus 361 ------l~~l~l~~n 369 (727)
T 4b8c_D 361 ------RRFIEINTD 369 (727)
T ss_dssp ---------------
T ss_pred ------cceeEeecc
Confidence 455666666
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=1.1e-18 Score=144.80 Aligned_cols=165 Identities=19% Similarity=0.233 Sum_probs=139.9
Q ss_pred CCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccE
Q 023193 103 NLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEI 182 (286)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 182 (286)
.+.++..++++++.+.+. + .+..+++|++|++++|.++. ++ .+..+++|++|++++|.++ .++. +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCE
Confidence 455677788999988743 3 67889999999999999984 44 6889999999999999998 5665 488999999
Q ss_pred eeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcc
Q 023193 183 LSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKL 262 (286)
Q Consensus 183 L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 262 (286)
|++++|++++ +|.... ++|++|++++|++++. + .+..+++|++|++++|.+++. + .+..+++|+.|++++|++
T Consensus 90 L~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGIPS--ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSC-CTTCCC--SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCC-cCcccc--CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 9999999985 443333 8999999999999964 3 588999999999999999965 4 688999999999999999
Q ss_pred cccchHHHhhccCCCceeeee
Q 023193 263 QGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 263 ~~~~~~~l~~l~~l~~l~l~~ 283 (286)
++. ..+..+++++.+++..
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEE
T ss_pred cch--HHhccCCCCCEEeCCC
Confidence 987 7788899999888754
No 112
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=5.5e-18 Score=156.19 Aligned_cols=90 Identities=23% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEec
Q 023193 178 PFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSL 257 (286)
Q Consensus 178 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 257 (286)
++|++|++++|.+++ +| ..+++|++|++++|.++. +|. .+++|+.|+|++|.++ .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 344555555555542 33 233556666666666653 333 4566777777777777 56667777777888888
Q ss_pred ccCcccccchHHHhhccCC
Q 023193 258 SENKLQGMIINFLQFYSSS 276 (286)
Q Consensus 258 ~~n~l~~~~~~~l~~l~~l 276 (286)
++|++++.+|..+..+...
T Consensus 292 ~~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 292 EGNPLSERTLQALREITSA 310 (622)
T ss_dssp CSCCCCHHHHHHHHHHHHS
T ss_pred cCCCCCCcCHHHHHhcccc
Confidence 8888877777777766543
No 113
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.5e-17 Score=153.33 Aligned_cols=73 Identities=25% Similarity=0.307 Sum_probs=56.8
Q ss_pred CCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceee
Q 023193 202 TYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCI 281 (286)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l 281 (286)
++|++|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|+++ .+|..+..+++++.+++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 567777777777774 44 445778888888888884 444 5678999999999998 67888999999998887
Q ss_pred ee
Q 023193 282 RS 283 (286)
Q Consensus 282 ~~ 283 (286)
..
T Consensus 292 ~~ 293 (622)
T 3g06_A 292 EG 293 (622)
T ss_dssp CS
T ss_pred cC
Confidence 53
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=1.5e-19 Score=161.34 Aligned_cols=166 Identities=23% Similarity=0.317 Sum_probs=90.3
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcC--------------------------------
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGT-------------------------------- 128 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-------------------------------- 128 (286)
.+++.++++++.+ +.+|++++++++|++|++++|.+.|.+|..++.+
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 3455556666655 4555555555555555555555555555544443
Q ss_pred -CCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceE
Q 023193 129 -YTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKL 207 (286)
Q Consensus 129 -~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 207 (286)
++|++|++++|.+++ +|.. .++|++|++++|.++ .++. ..++|++|++++|.+++ +| .++.+++|++|
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKII 158 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEE
Confidence 345555555555554 3332 245666666666665 3332 12577777777777774 55 47777788888
Q ss_pred ecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccc
Q 023193 208 SLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQG 264 (286)
Q Consensus 208 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 264 (286)
++++|++++ +|.. ..+|++|++++|.+++ +| .++.+++|+.|++++|.+++
T Consensus 159 ~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 159 DVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred ECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 888887774 4433 2477788888888775 44 47778888888888888776
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=8.4e-18 Score=150.04 Aligned_cols=161 Identities=25% Similarity=0.368 Sum_probs=91.2
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEe
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDF 160 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 160 (286)
.+++.|++++|.+++ +| .++++++|++|++++|.+.+ +|.. ..+|++|++++|.+++ +| .+..+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 356666666666664 44 46666777777777776663 3432 2366666666666664 34 4666677777777
Q ss_pred ecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 161 AHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 161 ~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
++|.++ .+|. ...+|++|++++|.++ .+|. ++.+++|++|++++|++++ +|.. .++|++|++++|.+++
T Consensus 203 ~~N~l~-~l~~----~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 203 DNNSLK-KLPD----LPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CSSCCS-SCCC----CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred CCCcCC-cCCC----CcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence 777665 3443 1245666666666665 4553 6666677777777776664 3321 2445555555555553
Q ss_pred CchhhhcCCCCCCEEecccCcccc
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQG 264 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~ 264 (286)
+|.. .++|+.|++++|++++
T Consensus 272 -l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 272 -LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSE
T ss_pred -cCcc---cCcCCEEECcCCccCc
Confidence 2221 1344455555555444
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=5.8e-18 Score=146.15 Aligned_cols=194 Identities=19% Similarity=0.157 Sum_probs=153.8
Q ss_pred EEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCC-ccccCCCCCCE-EEeec
Q 023193 85 ILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFP-SLIFNKSSLQL-LDFAH 162 (286)
Q Consensus 85 ~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-L~L~~ 162 (286)
.++.++++++ .+|..+ .+++++|++++|.++...+..|.++++|++|++++|++.+.+| ..|.+++++++ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4678888888 577655 3689999999999995555679999999999999999876665 46788888776 56677
Q ss_pred CCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEeccc-CCCccccchhhcCCc-ccceeecccccCCC
Q 023193 163 NTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPY-NDFSGAIPKEIGNLN-KLKRLYLGRNRLQG 240 (286)
Q Consensus 163 n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~ 240 (286)
|+++ .++...|..+++|++|++++|.++...+..+....++..+++.+ +++....+..+..+. .+++|++++|.++.
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 90 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp TTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred Cccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 9998 67777779999999999999999876666677777888999866 566655555666654 68899999999995
Q ss_pred CchhhhcCCCCCCEEeccc-CcccccchHHHhhccCCCceeeee
Q 023193 241 EIPQEFGNLAELEQMSLSE-NKLQGMIINFLQFYSSSACFCIRS 283 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~l~~l~l~~ 283 (286)
++.......+|+.+++++ |.++...+..|+.+++|+.+++..
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 554445567899999986 556666667889999999888653
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=3.7e-18 Score=131.83 Aligned_cols=132 Identities=19% Similarity=0.191 Sum_probs=66.8
Q ss_pred CCCCEEEcccCCCC-ccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEe
Q 023193 105 SSLQSLDLSFNQLS-GSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEIL 183 (286)
Q Consensus 105 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 183 (286)
+++++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~----------------- 84 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIF----------------- 84 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCC-----------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCc-----------------
Confidence 45556666665554 44555555555555555555555533 44445555555555555554
Q ss_pred eeeccccCCCCCccCcCCCCcceEecccCCCcccc-chhhcCCcccceeecccccCCCCch---hhhcCCCCCCEEeccc
Q 023193 184 SLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAI-PKEIGNLNKLKRLYLGRNRLQGEIP---QEFGNLAELEQMSLSE 259 (286)
Q Consensus 184 ~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~ 259 (286)
+.+|..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 85 --------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 85 --------GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp --------SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred --------hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 333333333444444444444444321 1344455555555555555554333 3455555555555555
Q ss_pred Cccc
Q 023193 260 NKLQ 263 (286)
Q Consensus 260 n~l~ 263 (286)
|.++
T Consensus 157 n~~~ 160 (168)
T 2ell_A 157 REDQ 160 (168)
T ss_dssp TTSC
T ss_pred CChh
Confidence 5544
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=8.4e-18 Score=129.83 Aligned_cols=132 Identities=20% Similarity=0.143 Sum_probs=107.5
Q ss_pred CcEEEEEeCCCCCc-ccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEE
Q 023193 81 HRVTILNISRLNLT-GTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLD 159 (286)
Q Consensus 81 ~~l~~l~l~~~~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 159 (286)
.+++.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67999999999998 78888889999999999999999865 7788999999999999999987888777799999999
Q ss_pred eecCCCCCCCch-hhhcCCCCccEeeeeccccCCCCC---ccCcCCCCcceEecccCCCc
Q 023193 160 FAHNTLSDEIPA-NICSNLPFLEILSLSQNMFHGGIP---STLSNCTYLQKLSLPYNDFS 215 (286)
Q Consensus 160 L~~n~l~~~l~~-~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~~~~L~~L~l~~n~l~ 215 (286)
+++|.++ .++. ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999997 4442 333677778888887777774433 35666777777777777665
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.4e-17 Score=131.46 Aligned_cols=131 Identities=23% Similarity=0.270 Sum_probs=114.2
Q ss_pred EEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCch-hhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecC
Q 023193 85 ILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPS-AIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHN 163 (286)
Q Consensus 85 ~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 163 (286)
.+++++++++ .+|..+.. ++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677788886 56665543 899999999999866654 4889999999999999999988999999999999999999
Q ss_pred CCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccc
Q 023193 164 TLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIP 219 (286)
Q Consensus 164 ~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~ 219 (286)
.++ .++...+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 89 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 998 4555555889999999999999999889999999999999999999987654
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=2.6e-17 Score=128.21 Aligned_cols=131 Identities=19% Similarity=0.294 Sum_probs=71.2
Q ss_pred CEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeec
Q 023193 108 QSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQ 187 (286)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~ 187 (286)
+.++++++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCC
Confidence 55666666665 334322 245666666666666444444555666666666666665 44444445555566666666
Q ss_pred cccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCc
Q 023193 188 NMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEI 242 (286)
Q Consensus 188 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 242 (286)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 5555444444555555555555555555443434455555555555555555433
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=2.9e-17 Score=129.78 Aligned_cols=127 Identities=28% Similarity=0.315 Sum_probs=75.4
Q ss_pred CEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeec
Q 023193 108 QSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQ 187 (286)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~ 187 (286)
+.++++++.+. .+|..+ .+++++|++++|.++ .+|..+..+++|++|++++|.++ .++...|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 45666666665 445433 245666666666665 45556666666666666666665 34444445666666666666
Q ss_pred cccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCC
Q 023193 188 NMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQ 239 (286)
Q Consensus 188 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 239 (286)
|.+++..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6666555555666666666666666666444445555666666666666554
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=5.4e-18 Score=128.26 Aligned_cols=126 Identities=24% Similarity=0.271 Sum_probs=50.8
Q ss_pred CCcEEEccCCCCC-ccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEe
Q 023193 130 TLKYVNFRENQLS-GAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLS 208 (286)
Q Consensus 130 ~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 208 (286)
++++|++++|.++ +.+|..+..+++|++|++++|.+++ + .. +..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3444444444443 3333334444444444444444432 1 11 13334444444444444333333333344444444
Q ss_pred cccCCCccc-cchhhcCCcccceeecccccCCCCch---hhhcCCCCCCEEecc
Q 023193 209 LPYNDFSGA-IPKEIGNLNKLKRLYLGRNRLQGEIP---QEFGNLAELEQMSLS 258 (286)
Q Consensus 209 l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~ 258 (286)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 444444331 12334444444444444444443332 234444444444443
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=1.1e-17 Score=126.51 Aligned_cols=128 Identities=17% Similarity=0.181 Sum_probs=114.1
Q ss_pred CCCCCEEEeecCCCC-CCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccce
Q 023193 152 KSSLQLLDFAHNTLS-DEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKR 230 (286)
Q Consensus 152 l~~L~~L~L~~n~l~-~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 230 (286)
.+++++|++++|.++ +.+|..+ ..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 467999999999997 6777755 7899999999999999865 77889999999999999999878888888999999
Q ss_pred eecccccCCCC-chhhhcCCCCCCEEecccCcccccch---HHHhhccCCCceeee
Q 023193 231 LYLGRNRLQGE-IPQEFGNLAELEQMSLSENKLQGMII---NFLQFYSSSACFCIR 282 (286)
Q Consensus 231 L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~l~~l~l~ 282 (286)
|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++++.+++.
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999999974 45889999999999999999998877 789999999888764
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=1.1e-16 Score=124.56 Aligned_cols=128 Identities=23% Similarity=0.279 Sum_probs=102.4
Q ss_pred eCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCC
Q 023193 88 ISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSD 167 (286)
Q Consensus 88 l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 167 (286)
+++++++ .+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 14 ~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~- 89 (177)
T 2o6r_A 14 CNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ- 89 (177)
T ss_dssp CCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred ecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-
Confidence 3444555 344333 368999999999998666667788999999999999998777777888999999999999998
Q ss_pred CCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccc
Q 023193 168 EIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIP 219 (286)
Q Consensus 168 ~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~ 219 (286)
.++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 5666666788999999999999986666667888999999999999887554
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=125.61 Aligned_cols=127 Identities=21% Similarity=0.251 Sum_probs=110.2
Q ss_pred EEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCC
Q 023193 85 ILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNT 164 (286)
Q Consensus 85 ~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 164 (286)
.++++++.++ .+|..+. +++++|++++|.+. .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4677788877 4665443 58999999999998 778899999999999999999998888889999999999999999
Q ss_pred CCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCcc
Q 023193 165 LSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSG 216 (286)
Q Consensus 165 l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 216 (286)
++ .++...|..+++|++|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 90 l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 98 5666666899999999999999996666678899999999999999864
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.69 E-value=3.1e-19 Score=141.73 Aligned_cols=156 Identities=18% Similarity=0.227 Sum_probs=109.7
Q ss_pred ccCCCCCCEEEcccCCCCccCch------hhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhh
Q 023193 101 LGNLSSLQSLDLSFNQLSGSIPS------AIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANIC 174 (286)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 174 (286)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~- 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD- 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-
Confidence 34445555666666666655554 77888888888888888875 55 6777788888888888887 666644
Q ss_pred cCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccc-hhhcCCcccceeecccccCCCCchh---------
Q 023193 175 SNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIP-KEIGNLNKLKRLYLGRNRLQGEIPQ--------- 244 (286)
Q Consensus 175 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~--------- 244 (286)
..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++.+|.
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 556778888888888874 34 46677788888888888775332 4677778888888888887765443
Q ss_pred -hhcCCCCCCEEecccCcccc
Q 023193 245 -EFGNLAELEQMSLSENKLQG 264 (286)
Q Consensus 245 -~~~~l~~L~~L~l~~n~l~~ 264 (286)
.+..+++|+.|| +|.++.
T Consensus 168 ~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 168 EVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHhCCCcEEEC--CcccCH
Confidence 367778888776 666653
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=4.6e-17 Score=139.31 Aligned_cols=199 Identities=17% Similarity=0.172 Sum_probs=155.1
Q ss_pred CcEEEEEeCCCCCc--------------------ccCchhccC--------CCCCCEEEcccCCCCccCchhhhcCCCCc
Q 023193 81 HRVTILNISRLNLT--------------------GTIPSQLGN--------LSSLQSLDLSFNQLSGSIPSAIFGTYTLK 132 (286)
Q Consensus 81 ~~l~~l~l~~~~i~--------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (286)
.+++.|||++|.+. ...+..|.+ +++|+.+++.+ .+....+..|.++++|+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 55777787777766 122345667 89999999988 77766677888999999
Q ss_pred EEEccCCCCCccCCccccCCCCCCEEEeecCCC-------C-------------------CCCchhhh------------
Q 023193 133 YVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTL-------S-------------------DEIPANIC------------ 174 (286)
Q Consensus 133 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l-------~-------------------~~l~~~~~------------ 174 (286)
++++++|.+....+..|..+.++..+....+.. . +.++..++
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL 207 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence 999999988766677777776666665443110 0 01111111
Q ss_pred ---------------cCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccc-eeecccccC
Q 023193 175 ---------------SNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLK-RLYLGRNRL 238 (286)
Q Consensus 175 ---------------~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l 238 (286)
..+++|+.+++++|.++...+..|.++.+|+++++.+| +....+.+|.++.+|+ .+++.+ .+
T Consensus 208 ~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l 285 (329)
T 3sb4_A 208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV 285 (329)
T ss_dssp EEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred EEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence 13789999999999998666678999999999999998 7767778899999999 999988 77
Q ss_pred CCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceeee
Q 023193 239 QGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCIR 282 (286)
Q Consensus 239 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l~ 282 (286)
+...+.+|..|++|+.+++++|.++...+..|..+++|+.+|.+
T Consensus 286 ~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~k 329 (329)
T 3sb4_A 286 TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYKK 329 (329)
T ss_dssp CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEECC
T ss_pred eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhccC
Confidence 76778899999999999999999999999999999999988754
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=8.7e-20 Score=166.82 Aligned_cols=174 Identities=18% Similarity=0.192 Sum_probs=146.6
Q ss_pred cCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCC-------------CCccCCccccCCCCCCEEE-eecCCCCC
Q 023193 102 GNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQ-------------LSGAFPSLIFNKSSLQLLD-FAHNTLSD 167 (286)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~ 167 (286)
...++|+.|++++|.+. .+|..+..+++|++|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56789999999999997 889999999999999997775 5567777788888888888 5655443
Q ss_pred CCchhhh-----c--CCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCC
Q 023193 168 EIPANIC-----S--NLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 168 ~l~~~~~-----~--~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
.++...+ . ....|++|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 2322100 0 12358999999999985 676 999999999999999999 788899999999999999999996
Q ss_pred CchhhhcCCCCCCEEecccCcccccc-hHHHhhccCCCceeee
Q 023193 241 EIPQEFGNLAELEQMSLSENKLQGMI-INFLQFYSSSACFCIR 282 (286)
Q Consensus 241 ~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~l~~l~l~ 282 (286)
+| .++.+++|+.|++++|++++.+ |..++.+++|+.+++.
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 66 8999999999999999999998 9999999999998875
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=2e-16 Score=123.09 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=55.8
Q ss_pred ccCCCCCCEEEcccCCCCccCchhhhcCC-CCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCC
Q 023193 101 LGNLSSLQSLDLSFNQLSGSIPSAIFGTY-TLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPF 179 (286)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 179 (286)
+.++.+|++|++++|.+.. ++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.++ .+|..++..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 4455666666666666652 333 33333 666666666666543 44555555666666666555 344444344555
Q ss_pred ccEeeeeccccCCCCCc--cCcCCCCcceEecccCCCc
Q 023193 180 LEILSLSQNMFHGGIPS--TLSNCTYLQKLSLPYNDFS 215 (286)
Q Consensus 180 L~~L~l~~n~l~~~~p~--~~~~~~~L~~L~l~~n~l~ 215 (286)
|++|++++|.++ .+|. .+..+++|++|++++|.++
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 555555555553 2232 3344444444444444443
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.66 E-value=1.6e-18 Score=137.66 Aligned_cols=151 Identities=20% Similarity=0.289 Sum_probs=129.6
Q ss_pred hhhcCCCCcEEEccCCCCCccCCc------cccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCcc
Q 023193 124 AIFGTYTLKYVNFRENQLSGAFPS------LIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPST 197 (286)
Q Consensus 124 ~~~~l~~L~~L~l~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 197 (286)
.+.....++.++++.+.+.+..|. .+..+++|++|++++|.++ .+| .+ ..+++|++|++++|.++ .+|..
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~-~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SL-SGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CH-HHHTTCCEEEEEEEEEC-SCSSH
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-cc-ccCCCCCEEECCCCCcc-cccch
Confidence 356677888888888888887776 8899999999999999998 577 44 78999999999999998 67877
Q ss_pred CcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCch-hhhcCCCCCCEEecccCcccccchH--------
Q 023193 198 LSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIP-QEFGNLAELEQMSLSENKLQGMIIN-------- 268 (286)
Q Consensus 198 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-------- 268 (286)
+..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++.+|.
T Consensus 89 ~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred hhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 7778999999999999996 45 68889999999999999996443 5789999999999999999888765
Q ss_pred --HHhhccCCCcee
Q 023193 269 --FLQFYSSSACFC 280 (286)
Q Consensus 269 --~l~~l~~l~~l~ 280 (286)
.+..+++++.++
T Consensus 167 ~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHCSSCSEEC
T ss_pred HHHHHhCCCcEEEC
Confidence 388888888776
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=1.6e-16 Score=123.68 Aligned_cols=135 Identities=14% Similarity=0.170 Sum_probs=110.0
Q ss_pred hhhcCCCCcEEEccCCCCCccCCccccCC-CCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCC
Q 023193 124 AIFGTYTLKYVNFRENQLSGAFPSLIFNK-SSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCT 202 (286)
Q Consensus 124 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 202 (286)
.+..+.+|++|++++|.++. +|. +..+ ++|++|++++|.++ .+ .. +..+++|++|++++|.+++..+..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~-~~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIR-KL-DG-FPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCC-EE-CC-CCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCC-cc-cc-cccCCCCCEEECCCCcccccCcchhhcCC
Confidence 45678899999999999984 454 4444 49999999999998 44 33 47899999999999999865445558899
Q ss_pred CcceEecccCCCccccch--hhcCCcccceeecccccCCCCchh----hhcCCCCCCEEecccCccccc
Q 023193 203 YLQKLSLPYNDFSGAIPK--EIGNLNKLKRLYLGRNRLQGEIPQ----EFGNLAELEQMSLSENKLQGM 265 (286)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~ 265 (286)
+|++|++++|.++ .+|. .+..+++|+.|++++|.++. +|. .+..+++|+.||+++|.....
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 9999999999997 4554 78889999999999999984 454 488999999999999987643
No 132
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=1.1e-16 Score=147.40 Aligned_cols=203 Identities=12% Similarity=0.072 Sum_probs=109.5
Q ss_pred CcEEEEEeCCCCCcccCc-hhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccC-----------CCCCccCC-c
Q 023193 81 HRVTILNISRLNLTGTIP-SQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRE-----------NQLSGAFP-S 147 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~p-~ 147 (286)
.+++.|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|++++ +.+++... .
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 467777787777654332 3356667777777763221122333334566777777772 44443211 1
Q ss_pred cccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeee----ccccCCC-----CCccCcCCCCcceEecccC--CCcc
Q 023193 148 LIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLS----QNMFHGG-----IPSTLSNCTYLQKLSLPYN--DFSG 216 (286)
Q Consensus 148 ~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~----~n~l~~~-----~p~~~~~~~~L~~L~l~~n--~l~~ 216 (286)
....+++|++|+++.|.+++..+..+...+++|++|+++ .|.+++. ++..+..+++|++|++++| .+++
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 223466777777766666654444443346677777775 4455432 2222444566666666532 2444
Q ss_pred ccchhhc-CCcccceeecccccCCC-CchhhhcCCCCCCEEecccCcccccc-hHHHhhccCCCceeeee
Q 023193 217 AIPKEIG-NLNKLKRLYLGRNRLQG-EIPQEFGNLAELEQMSLSENKLQGMI-INFLQFYSSSACFCIRS 283 (286)
Q Consensus 217 ~~~~~~~-~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~l~~l~l~~ 283 (286)
..+..+. .+++|++|++++|.+++ .++..+..+++|++|++++|++++.. +.....+++++.+++..
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence 3333332 35566666666666654 23444455666666666666665443 33344566666665543
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=3e-15 Score=115.70 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=48.4
Q ss_pred cEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEeccc
Q 023193 132 KYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPY 211 (286)
Q Consensus 132 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~ 211 (286)
+++++++|.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45555555554 2333331 44555555555554 23222224445555555555555443333444445555555555
Q ss_pred CCCccccchhhcCCcccceeecccccCC
Q 023193 212 NDFSGAIPKEIGNLNKLKRLYLGRNRLQ 239 (286)
Q Consensus 212 n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 239 (286)
|++++..+..+..+++|++|+|++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5554433334444445555555555444
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=8.9e-15 Score=113.50 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=59.4
Q ss_pred cEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEeccc
Q 023193 132 KYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPY 211 (286)
Q Consensus 132 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~ 211 (286)
+++++++|.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45666666665 4444442 55666666666665 33333335566666666666666644444455566666666666
Q ss_pred CCCccccchhhcCCcccceeecccccCC
Q 023193 212 NDFSGAIPKEIGNLNKLKRLYLGRNRLQ 239 (286)
Q Consensus 212 n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 239 (286)
|++++..+..+..+++|++|+|++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666444444555666666666666655
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.56 E-value=3e-16 Score=136.29 Aligned_cols=97 Identities=19% Similarity=0.163 Sum_probs=46.1
Q ss_pred CCCccEeeeeccccCC----CCCccCcCCCCcceEecccCCCccc----cchhhcCCcccceeecccccCCCC----chh
Q 023193 177 LPFLEILSLSQNMFHG----GIPSTLSNCTYLQKLSLPYNDFSGA----IPKEIGNLNKLKRLYLGRNRLQGE----IPQ 244 (286)
Q Consensus 177 l~~L~~L~l~~n~l~~----~~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~ 244 (286)
.++|++|++++|.+++ .++..+...++|++|++++|.+++. ++..+...++|++|+|++|.+++. ++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 3445555555555432 1222234445555555555555432 123334444555555555555532 223
Q ss_pred hhcCCCCCCEEecccCcccccchHHHhhc
Q 023193 245 EFGNLAELEQMSLSENKLQGMIINFLQFY 273 (286)
Q Consensus 245 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 273 (286)
.+..+++|++|++++|.+++.....++.+
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 33444555555555555555555555443
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=6.7e-16 Score=142.04 Aligned_cols=201 Identities=13% Similarity=0.114 Sum_probs=122.4
Q ss_pred CcEEEEEeCCCCCccc-CchhccCCCCCCEEEcccCCCCcc-CchhhhcCCCCcEEEccC---------CCCCccCCccc
Q 023193 81 HRVTILNISRLNLTGT-IPSQLGNLSSLQSLDLSFNQLSGS-IPSAIFGTYTLKYVNFRE---------NQLSGAFPSLI 149 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~---------n~l~~~~p~~~ 149 (286)
.+++.|+++++.+++. ++..+..+++|++|++++| +... ++.....+++|++|++++ +.+++.....+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 5788999999987754 3333567888999999887 4322 222233578888888833 34443222222
Q ss_pred c-CCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeee--c----cccCCC-----CCccCcCCCCcceEecccCCCccc
Q 023193 150 F-NKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLS--Q----NMFHGG-----IPSTLSNCTYLQKLSLPYNDFSGA 217 (286)
Q Consensus 150 ~-~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~--~----n~l~~~-----~p~~~~~~~~L~~L~l~~n~l~~~ 217 (286)
. .+++|++|.+..|.+++.....+...+++|++|+++ + +.+++. ++..+..+++|++|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 2 367788887777777654444444457788888887 3 344421 111244566777777766 55544
Q ss_pred cchhhcC-CcccceeecccccCCCCchhhh-cCCCCCCEEecccCcccccchH-HHhhccCCCceeeee
Q 023193 218 IPKEIGN-LNKLKRLYLGRNRLQGEIPQEF-GNLAELEQMSLSENKLQGMIIN-FLQFYSSSACFCIRS 283 (286)
Q Consensus 218 ~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~l~~l~l~~ 283 (286)
.+..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|++++..+. ....+++|+.+++..
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEES
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeC
Confidence 4444443 6667777777777765444444 5567777777777777555443 334466666666654
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=3.8e-15 Score=137.03 Aligned_cols=62 Identities=10% Similarity=0.180 Sum_probs=35.2
Q ss_pred CcEEEEEeCCCCCccc----CchhccCCCCCCEEEcccCCCC----ccCchhhhcCCCCcEEEccCCCCC
Q 023193 81 HRVTILNISRLNLTGT----IPSQLGNLSSLQSLDLSFNQLS----GSIPSAIFGTYTLKYVNFRENQLS 142 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~----~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~ 142 (286)
++++.|++++|.+++. ++..+..+++|++|++++|.+. +.++..+..+++|++|++++|.+.
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 4566677777665543 3333445566666666666665 223334445666666666666554
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=4.1e-14 Score=109.30 Aligned_cols=102 Identities=24% Similarity=0.262 Sum_probs=48.6
Q ss_pred EEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCC
Q 023193 85 ILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNT 164 (286)
Q Consensus 85 ~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 164 (286)
.++++++.++. +|..+. +++++|++++|.+.+..|..|.++++|++|++++|++++..+..+..+++|++|++++|.
T Consensus 13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 45555555552 443332 455555555555554445555555555555555555554333334444444444444444
Q ss_pred CCCCCchhhhcCCCCccEeeeecccc
Q 023193 165 LSDEIPANICSNLPFLEILSLSQNMF 190 (286)
Q Consensus 165 l~~~l~~~~~~~l~~L~~L~l~~n~l 190 (286)
++ .++...+..+++|++|++++|.+
T Consensus 90 l~-~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LK-SIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred cC-EeCHHHhcCCCCCCEEEeCCCCC
Confidence 44 33333334444444444444444
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=7.6e-14 Score=108.22 Aligned_cols=103 Identities=24% Similarity=0.332 Sum_probs=50.8
Q ss_pred EEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCC
Q 023193 85 ILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNT 164 (286)
Q Consensus 85 ~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 164 (286)
.++++++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|++++..+..+..+++|++|++++|.
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4566666654 3444332 455555555555554445555555555555555555554333334444555555555555
Q ss_pred CCCCCchhhhcCCCCccEeeeeccccC
Q 023193 165 LSDEIPANICSNLPFLEILSLSQNMFH 191 (286)
Q Consensus 165 l~~~l~~~~~~~l~~L~~L~l~~n~l~ 191 (286)
++ .+|...+..+++|++|++++|.+.
T Consensus 93 l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 54 333333344444444444444443
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=4.7e-16 Score=135.07 Aligned_cols=187 Identities=16% Similarity=0.165 Sum_probs=134.4
Q ss_pred CcEEEEEeCCCCCcccCchhccC-----CCCCCEEEcccCCCCccCchhhh-cCCCCcEEEccCCCCCccCCccc-----
Q 023193 81 HRVTILNISRLNLTGTIPSQLGN-----LSSLQSLDLSFNQLSGSIPSAIF-GTYTLKYVNFRENQLSGAFPSLI----- 149 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~----- 149 (286)
..++.+++++|.++......+.. .++|++|++++|.++......+. .+++|++|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56889999999998643333332 36899999999998754333333 46789999999999986544444
Q ss_pred cCCCCCCEEEeecCCCCCC----CchhhhcCCCCccEeeeeccccCCC----CCccCcCCCCcceEecccCCCccc----
Q 023193 150 FNKSSLQLLDFAHNTLSDE----IPANICSNLPFLEILSLSQNMFHGG----IPSTLSNCTYLQKLSLPYNDFSGA---- 217 (286)
Q Consensus 150 ~~l~~L~~L~L~~n~l~~~----l~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~l~~n~l~~~---- 217 (286)
...++|++|++++|.+++. ++..+ ...++|++|++++|.+++. ++..+...++|++|++++|.+++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3568899999999999632 22223 6788999999999998753 355677788999999999999864
Q ss_pred cchhhcCCcccceeecccccCCCCchhhhcCCC-----CCCEEe--cccCcccccchH
Q 023193 218 IPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLA-----ELEQMS--LSENKLQGMIIN 268 (286)
Q Consensus 218 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~--l~~n~l~~~~~~ 268 (286)
++..+...++|++|+|++|.+++.....+..+. .++.+. +.+|.++.....
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~ 288 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSV 288 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHH
Confidence 334455678999999999999976665555432 177777 777777655333
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=7.1e-15 Score=135.20 Aligned_cols=199 Identities=14% Similarity=0.150 Sum_probs=120.5
Q ss_pred CcEEEEEeCCCCCcccCchhcc-CCCCCCEEEcccC-CCCcc-CchhhhcCCCCcEEEccCCCCCccCCccc----cCCC
Q 023193 81 HRVTILNISRLNLTGTIPSQLG-NLSSLQSLDLSFN-QLSGS-IPSAIFGTYTLKYVNFRENQLSGAFPSLI----FNKS 153 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~----~~l~ 153 (286)
++++.|+++++.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5789999999988877666665 6889999999998 45432 44445579999999999998876544433 3677
Q ss_pred CCCEEEeecCC--CCCCCchhhhcCCCCccEeeeecc-ccCCCCCccCcCCCCcceEecccCC-----------------
Q 023193 154 SLQLLDFAHNT--LSDEIPANICSNLPFLEILSLSQN-MFHGGIPSTLSNCTYLQKLSLPYND----------------- 213 (286)
Q Consensus 154 ~L~~L~L~~n~--l~~~l~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~~~L~~L~l~~n~----------------- 213 (286)
+|++|++++|. ++......+...+++|++|++++| .+. .++..+..+++|++|+++.+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 99999999887 321112223345788999999887 232 244444455555555543321
Q ss_pred ---------Cc----cccchhhcCCcccceeecccccCCCCc-hhhhcCCCCCCEEecccCcccccch-HHHhhccCCCc
Q 023193 214 ---------FS----GAIPKEIGNLNKLKRLYLGRNRLQGEI-PQEFGNLAELEQMSLSENKLQGMII-NFLQFYSSSAC 278 (286)
Q Consensus 214 ---------l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~l~~ 278 (286)
+. +.++..+..+++|++|++++|.+++.. +..+..+++|+.|++++| +++... .....+++|+.
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 00 112222234556666666666655332 223445666666666666 332222 22233555555
Q ss_pred eee
Q 023193 279 FCI 281 (286)
Q Consensus 279 l~l 281 (286)
+++
T Consensus 343 L~L 345 (594)
T 2p1m_B 343 LRV 345 (594)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=1e-13 Score=118.49 Aligned_cols=173 Identities=14% Similarity=0.151 Sum_probs=141.7
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCC----CccCCccc-------
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQL----SGAFPSLI------- 149 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~p~~~------- 149 (286)
..++.+++.+ .++..-+.+|.++++|+++++++|.+....+..|.++.++.++....+.. .......+
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 6688899998 88877778899999999999999998867777888877777776655211 00000000
Q ss_pred -------------------------------------------cCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeee
Q 023193 150 -------------------------------------------FNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLS 186 (286)
Q Consensus 150 -------------------------------------------~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~ 186 (286)
..+++|+++++++|+++ .++...|..+.+|+++++.
T Consensus 180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECC
T ss_pred eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECC
Confidence 02789999999999998 8999999999999999999
Q ss_pred ccccCCCCCccCcCCCCcc-eEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEec
Q 023193 187 QNMFHGGIPSTLSNCTYLQ-KLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSL 257 (286)
Q Consensus 187 ~n~l~~~~p~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 257 (286)
+| ++...+..|.++.+|+ .+++.+ .++...+.+|.++++|+.+++.+|.++...+.+|.++++|+.++.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 98 7766677899999999 999998 777677789999999999999999999888889999999999864
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=3.1e-12 Score=112.07 Aligned_cols=192 Identities=14% Similarity=0.141 Sum_probs=101.8
Q ss_pred EEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeec
Q 023193 83 VTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAH 162 (286)
Q Consensus 83 l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (286)
++.+.+.. .+...-+.+|.++.+|+.+++.+|.+.......|. ..+|+.+.+.++ ++......|.++++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 45555554 44444455666777777777776666533233333 455565555533 4434444555555555555544
Q ss_pred C---------------------CCCCCCchhhhcCCCCccEeeeeccccC-----CCCCccCcCCCCcceEecccCCCcc
Q 023193 163 N---------------------TLSDEIPANICSNLPFLEILSLSQNMFH-----GGIPSTLSNCTYLQKLSLPYNDFSG 216 (286)
Q Consensus 163 n---------------------~l~~~l~~~~~~~l~~L~~L~l~~n~l~-----~~~p~~~~~~~~L~~L~l~~n~l~~ 216 (286)
+ .++ .++...|..+.+|+.+.+.+|.+. ...+..|.++++|+.+.+.+ .++.
T Consensus 236 ~l~~I~~~aF~~~~L~~i~lp~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~ 313 (401)
T 4fdw_A 236 NVSTIGQEAFRESGITTVKLPNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI 313 (401)
T ss_dssp TCCEECTTTTTTCCCSEEEEETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE
T ss_pred CccCccccccccCCccEEEeCCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE
Confidence 2 232 344444555556666666555443 13334455556666666653 3443
Q ss_pred ccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhcc-CCCceee
Q 023193 217 AIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYS-SSACFCI 281 (286)
Q Consensus 217 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~l~~l~l 281 (286)
....+|.++.+|+.+++..| ++.....+|..+ +|+.+++++|.+.......|..++ ++..+++
T Consensus 314 I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 44455666666666666433 444445566666 666666666666555555555543 3444443
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=8.6e-13 Score=113.44 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=72.8
Q ss_pred EEEccCC-CCCccCCccccCCCCCCEEEeec-CCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecc
Q 023193 133 YVNFREN-QLSGAFPSLIFNKSSLQLLDFAH-NTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLP 210 (286)
Q Consensus 133 ~L~l~~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~ 210 (286)
+++.+++ .++ .+|. +..+++|++|+|++ |.++ .++...|..+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 666 4666 77777777777775 7776 5555555777777777777777777667777777777777777
Q ss_pred cCCCccccchhhcCCcccceeecccccCCC
Q 023193 211 YNDFSGAIPKEIGNLNKLKRLYLGRNRLQG 240 (286)
Q Consensus 211 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 240 (286)
+|++++..+..+..++ |+.|+|.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 7777765555555544 7777777777763
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.37 E-value=6.2e-12 Score=110.17 Aligned_cols=177 Identities=11% Similarity=0.117 Sum_probs=124.1
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCC----------------------CCcEEEccC
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTY----------------------TLKYVNFRE 138 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------~L~~L~l~~ 138 (286)
..++.+++.++.++......|. ..+|+.+.+..+ +.......|.+++ +|+.+.+.
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp- 256 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLP- 256 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE-
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeC-
Confidence 4566777776665533333333 344555554422 3323333444444 45555552
Q ss_pred CCCCccCCccccCCCCCCEEEeecCCCC----CCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCcceEecccCCC
Q 023193 139 NQLSGAFPSLIFNKSSLQLLDFAHNTLS----DEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDF 214 (286)
Q Consensus 139 n~l~~~~p~~~~~l~~L~~L~L~~n~l~----~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l 214 (286)
+.++......|.++++|+.+++.+|.+. ..++...|..+++|+.+.+.. .++......|.++.+|+.+.+..+ +
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c
Confidence 3345455677889999999999988764 137778889999999999984 576566678999999999999665 6
Q ss_pred ccccchhhcCCcccceeecccccCCCCchhhhcCCC-CCCEEecccCccc
Q 023193 215 SGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLA-ELEQMSLSENKLQ 263 (286)
Q Consensus 215 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~ 263 (286)
+...+.+|.++ +|+.+++.+|.+....+..|..++ +++.|++..+.+.
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 65667889998 999999999998877777888875 6889988887653
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=3.5e-12 Score=109.63 Aligned_cols=101 Identities=21% Similarity=0.220 Sum_probs=85.4
Q ss_pred eCCC-CCcccCchhccCCCCCCEEEccc-CCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCC
Q 023193 88 ISRL-NLTGTIPSQLGNLSSLQSLDLSF-NQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTL 165 (286)
Q Consensus 88 l~~~-~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 165 (286)
.+++ +++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|++|++++|++++..|..|..+++|++|+|++|.+
T Consensus 15 ~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 15 CTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred cCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 3444 566 4777 88999999999996 999877778899999999999999999988888899999999999999999
Q ss_pred CCCCchhhhcCCCCccEeeeeccccCC
Q 023193 166 SDEIPANICSNLPFLEILSLSQNMFHG 192 (286)
Q Consensus 166 ~~~l~~~~~~~l~~L~~L~l~~n~l~~ 192 (286)
+ .+|...+..+. |++|++.+|.+..
T Consensus 93 ~-~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 93 E-SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp S-CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred c-eeCHHHcccCC-ceEEEeeCCCccC
Confidence 8 67777766555 9999999998863
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.24 E-value=2.1e-11 Score=105.19 Aligned_cols=189 Identities=15% Similarity=0.152 Sum_probs=129.6
Q ss_pred CcEEEEEeCCCCCcc-c-------CchhccCCCCCCEEEcccCCCC---------ccCchhhhcCCCCcEEEccCCCCCc
Q 023193 81 HRVTILNISRLNLTG-T-------IPSQLGNLSSLQSLDLSFNQLS---------GSIPSAIFGTYTLKYVNFRENQLSG 143 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~-~-------~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~ 143 (286)
.+|+.|.+......+ . +..+...+++|+.|.+.+.... +.+...+..+|+|+.|++++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 457777777655442 1 2333556789999998765331 134456678899999999887311
Q ss_pred cCCccccCCCCCCEEEeecCCCCCCCchhhh-cCCCCccEeeeec--cccCCC-----CCccC--cCCCCcceEecccCC
Q 023193 144 AFPSLIFNKSSLQLLDFAHNTLSDEIPANIC-SNLPFLEILSLSQ--NMFHGG-----IPSTL--SNCTYLQKLSLPYND 213 (286)
Q Consensus 144 ~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~-~~l~~L~~L~l~~--n~l~~~-----~p~~~--~~~~~L~~L~l~~n~ 213 (286)
.++. + .+++|++|++..+.++......+. ..+++|++|+|+. |...+. +...+ ..+++|++|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 2333 3 388999999999888643333332 2689999999863 221111 11222 247899999999999
Q ss_pred Cccccchhhc---CCcccceeecccccCCCCc----hhhhcCCCCCCEEecccCcccccchHHHhh
Q 023193 214 FSGAIPKEIG---NLNKLKRLYLGRNRLQGEI----PQEFGNLAELEQMSLSENKLQGMIINFLQF 272 (286)
Q Consensus 214 l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 272 (286)
+.+..+..+. .+++|++|+|+.|.+++.. +..+.++++|+.|++++|.+++.....+..
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 8764444443 5789999999999998743 344456799999999999998877777766
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=4.6e-10 Score=96.74 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=120.4
Q ss_pred CcEEEEEeCCCCCc---------ccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCcccc-
Q 023193 81 HRVTILNISRLNLT---------GTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIF- 150 (286)
Q Consensus 81 ~~l~~l~l~~~~i~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~- 150 (286)
++++.|.+...... +.+...+..+++|+.|++++|.-. .++. + .+++|++|++..+.+.......+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 56788888654321 235566678899999999987311 2333 3 388999999999987644434443
Q ss_pred -CCCCCCEEEeec--CCCCCC-----Cchhhh-cCCCCccEeeeeccccCCCCCccC---cCCCCcceEecccCCCcccc
Q 023193 151 -NKSSLQLLDFAH--NTLSDE-----IPANIC-SNLPFLEILSLSQNMFHGGIPSTL---SNCTYLQKLSLPYNDFSGAI 218 (286)
Q Consensus 151 -~l~~L~~L~L~~--n~l~~~-----l~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~---~~~~~L~~L~l~~n~l~~~~ 218 (286)
.+++|++|+|+. +...+. +...+. ..+++|++|++.+|.+.+..+..+ ..+++|++|+++.|.+.+..
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 789999999863 221111 111111 247899999999998875333222 35789999999999998743
Q ss_pred c----hhhcCCcccceeecccccCCCCchhhhcC-CCCCCEEecccCc
Q 023193 219 P----KEIGNLNKLKRLYLGRNRLQGEIPQEFGN-LAELEQMSLSENK 261 (286)
Q Consensus 219 ~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~ 261 (286)
+ ..+..+++|+.|++++|.++...-..+.. + ...+++++++
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 3 33345689999999999988665555554 3 3678998887
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.84 E-value=1.5e-11 Score=101.08 Aligned_cols=79 Identities=25% Similarity=0.375 Sum_probs=45.2
Q ss_pred CCCCccEeeeeccccCC--CCCccCcCCCCcceEecccCCCccccchhhcCCc--ccceeecccccCCCCch-------h
Q 023193 176 NLPFLEILSLSQNMFHG--GIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLN--KLKRLYLGRNRLQGEIP-------Q 244 (286)
Q Consensus 176 ~l~~L~~L~l~~n~l~~--~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~-------~ 244 (286)
.+++|++|+|++|++++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|.+++..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45556666666666654 2334445566666666666666643 1222222 67777777777765433 3
Q ss_pred hhcCCCCCCEEe
Q 023193 245 EFGNLAELEQMS 256 (286)
Q Consensus 245 ~~~~l~~L~~L~ 256 (286)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 466677777765
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.78 E-value=2e-09 Score=83.94 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=43.8
Q ss_pred cCCCCcceEecccCCCccc----cchhhcCCcccceeec--ccccCCCC----chhhhcCCCCCCEEecccCcccc
Q 023193 199 SNCTYLQKLSLPYNDFSGA----IPKEIGNLNKLKRLYL--GRNRLQGE----IPQEFGNLAELEQMSLSENKLQG 264 (286)
Q Consensus 199 ~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 264 (286)
...++|++|++++|.+.+. +...+...+.|++|+| ++|.+... +...+...++|++|++++|.+..
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3345566666666666542 2344555667788888 77777753 34556667888999999888753
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.65 E-value=3.4e-09 Score=87.08 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=66.5
Q ss_pred cCCCCcceEecccCCCcc--ccchhhcCCcccceeecccccCCCCchhhhcCCC--CCCEEecccCcccccch-------
Q 023193 199 SNCTYLQKLSLPYNDFSG--AIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLA--ELEQMSLSENKLQGMII------- 267 (286)
Q Consensus 199 ~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~------- 267 (286)
.++++|++|+|++|.+++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|+.|++++|++++..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457899999999999997 4556778899999999999999965 2344444 89999999999998665
Q ss_pred HHHhhccCCCceeee
Q 023193 268 NFLQFYSSSACFCIR 282 (286)
Q Consensus 268 ~~l~~l~~l~~l~l~ 282 (286)
..+..+++|..++=+
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 457888988887643
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=2e-08 Score=78.28 Aligned_cols=109 Identities=19% Similarity=0.217 Sum_probs=79.0
Q ss_pred cCCCCccEeeeecc-ccCC----CCCccCcCCCCcceEecccCCCccc----cchhhcCCcccceeecccccCCCC----
Q 023193 175 SNLPFLEILSLSQN-MFHG----GIPSTLSNCTYLQKLSLPYNDFSGA----IPKEIGNLNKLKRLYLGRNRLQGE---- 241 (286)
Q Consensus 175 ~~l~~L~~L~l~~n-~l~~----~~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~---- 241 (286)
...++|++|++++| .+.. .+...+...++|++|++++|.+.+. +...+...++|++|+|++|.+.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 45566667777666 6543 2334455667889999999988753 334455668899999999999864
Q ss_pred chhhhcCCCCCCEEec--ccCcccccch----HHHhhccCCCceeeee
Q 023193 242 IPQEFGNLAELEQMSL--SENKLQGMII----NFLQFYSSSACFCIRS 283 (286)
Q Consensus 242 ~~~~~~~l~~L~~L~l--~~n~l~~~~~----~~l~~l~~l~~l~l~~ 283 (286)
+...+...++|++|++ ++|.++.... ..+...++++.+++..
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 4667788889999999 8899987654 4555557888877653
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.51 E-value=8.4e-07 Score=77.31 Aligned_cols=174 Identities=14% Similarity=0.161 Sum_probs=82.6
Q ss_pred CcEEEEEeCCCCCcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCC-------------------
Q 023193 81 HRVTILNISRLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQL------------------- 141 (286)
Q Consensus 81 ~~l~~l~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------------------- 141 (286)
..++.+.+..+- ...-...|.++.+|+.+.+..+ +.......|.++..|+.+.+..+..
T Consensus 162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~ 239 (394)
T 4fs7_A 162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPD 239 (394)
T ss_dssp TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECT
T ss_pred CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECC
Confidence 456777776543 3344556777777887777654 3323334455555555444433211
Q ss_pred --CccCCccccCCCCCCEEEeecCCCC-------------------CCCchhhhcCCCCccEeeeeccccCCCCCccCcC
Q 023193 142 --SGAFPSLIFNKSSLQLLDFAHNTLS-------------------DEIPANICSNLPFLEILSLSQNMFHGGIPSTLSN 200 (286)
Q Consensus 142 --~~~~p~~~~~l~~L~~L~L~~n~l~-------------------~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 200 (286)
+......+..+..++.+.+..+... ..++...|..+.+|+.+.+..+ ++......|.+
T Consensus 240 ~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~ 318 (394)
T 4fs7_A 240 SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFES 318 (394)
T ss_dssp TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTT
T ss_pred CceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcC
Confidence 1122233445555666655544321 0122222334444444444332 22222334555
Q ss_pred CCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEeccc
Q 023193 201 CTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSE 259 (286)
Q Consensus 201 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 259 (286)
+.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++.....+|..|++|+.+++..
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 555555555432 33333445555555555555444 4433444555555555555543
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.38 E-value=2.6e-06 Score=74.16 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=88.4
Q ss_pred hhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCC
Q 023193 124 AIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTY 203 (286)
Q Consensus 124 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 203 (286)
.|..+..++.+....+.+ ....+..+.+|+.+.+..+ ++ .+....|..+.+|+.+.+..+ ++.....+|.++.+
T Consensus 271 ~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS 344 (394)
T ss_dssp TTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred ccccccccceeccCceee---ccccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence 344444444444433321 2234667888999988765 55 677778889999999999754 65455678999999
Q ss_pred cceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEE
Q 023193 204 LQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQM 255 (286)
Q Consensus 204 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 255 (286)
|+.+.+..+ ++.....+|.++.+|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 345 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 345 LSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 999999877 66566788999999999999765 33 345678888887765
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.37 E-value=4.9e-06 Score=72.45 Aligned_cols=60 Identities=8% Similarity=0.129 Sum_probs=29.1
Q ss_pred hhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCCceee
Q 023193 220 KEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSACFCI 281 (286)
Q Consensus 220 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~~l~l 281 (286)
.+|.++.+|+.+++..+ ++.....+|..|.+|+.+.+..+ ++......|..+.+|+.+.+
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 34445555555555432 33333445555555555555332 44444455555555554443
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=2.9e-07 Score=70.44 Aligned_cols=86 Identities=8% Similarity=0.094 Sum_probs=53.1
Q ss_pred CccEeeeeccccCCCCCccCcCCCCcceEecccCC-CccccchhhcCC----cccceeeccccc-CCCCchhhhcCCCCC
Q 023193 179 FLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYND-FSGAIPKEIGNL----NKLKRLYLGRNR-LQGEIPQEFGNLAEL 252 (286)
Q Consensus 179 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 252 (286)
+|++|+++++.+++.--..+..+++|++|+|++|. +++..-..++.+ ++|++|+|++|. +|+.--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45566666665554444445566677777777763 555433444443 367777777764 665555566677778
Q ss_pred CEEecccCc-ccc
Q 023193 253 EQMSLSENK-LQG 264 (286)
Q Consensus 253 ~~L~l~~n~-l~~ 264 (286)
+.|+++++. +++
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 888888776 554
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=4.6e-07 Score=69.36 Aligned_cols=90 Identities=10% Similarity=0.124 Sum_probs=73.7
Q ss_pred CccCcCCCCcceEecccCCCccccchhhcCCcccceeeccccc-CCCCchhhhcCC----CCCCEEecccCc-ccccchH
Q 023193 195 PSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNR-LQGEIPQEFGNL----AELEQMSLSENK-LQGMIIN 268 (286)
Q Consensus 195 p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~ 268 (286)
|.....-..|++||++++.+++..-..+.++++|++|+|++|. +++.--..+..+ ++|++|++++|. +|+....
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4333333579999999999987766678899999999999995 776555566654 479999999986 9999999
Q ss_pred HHhhccCCCceeeeec
Q 023193 269 FLQFYSSSACFCIRSL 284 (286)
Q Consensus 269 ~l~~l~~l~~l~l~~l 284 (286)
.++++++|+.++++.+
T Consensus 134 ~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HGGGCTTCCEEEEESC
T ss_pred HHhcCCCCCEEECCCC
Confidence 9999999999998875
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.34 E-value=6.1e-06 Score=71.84 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=54.7
Q ss_pred CcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhccCCC
Q 023193 198 LSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYSSSA 277 (286)
Q Consensus 198 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~l~ 277 (286)
|.++..|+.+.+..+... .....+.++.+|+.+.+. +.++.....+|..|.+|+.+++..+ ++......|..+.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 444555666665544332 334556666777777774 4455455677888899999998754 6666678888888888
Q ss_pred ceeee
Q 023193 278 CFCIR 282 (286)
Q Consensus 278 ~l~l~ 282 (286)
.+.+.
T Consensus 338 ~i~ip 342 (394)
T 4gt6_A 338 RIAIP 342 (394)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77763
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.29 E-value=8.7e-06 Score=70.36 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=85.1
Q ss_pred hhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCCCCccEeeeeccccCCCCCccCcCCCCc
Q 023193 125 IFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMFHGGIPSTLSNCTYL 204 (286)
Q Consensus 125 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L 204 (286)
+....+++.+.+..+ +.......+..+..|+.+.+..+ ++ .+....|....+|+.+.+..+ ++......|.++.+|
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccc
Confidence 344445555555433 22233445556667777776554 43 455555666677777776543 332334556677777
Q ss_pred ceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCCCEEecccCcccccchHHHhhcc
Q 023193 205 QKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAELEQMSLSENKLQGMIINFLQFYS 274 (286)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 274 (286)
+.+.+.++.++.....+|.++.+|+.+.|..+ ++.....+|.+|.+|+.+.+..+ ++......|..+.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 77777776666555566777777777777543 55444566777777777777543 4444445555543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.23 E-value=1.5e-05 Score=68.87 Aligned_cols=149 Identities=15% Similarity=0.217 Sum_probs=114.4
Q ss_pred chhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeecCCCCCCCchhhhcCC
Q 023193 98 PSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAHNTLSDEIPANICSNL 177 (286)
Q Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l 177 (286)
...+....+++.+.+..+ +.......|.++.+|+.+.+..+ ++......+..+.+|+.+.+..+ ++ .++...|..+
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c 285 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGC 285 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTC
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccc
Confidence 344566778888887654 33355667888999999999876 55566677888999999999654 54 6777788899
Q ss_pred CCccEeeeeccccCCCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCCCCchhhhcCCCCC
Q 023193 178 PFLEILSLSQNMFHGGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQGEIPQEFGNLAEL 252 (286)
Q Consensus 178 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 252 (286)
.+|+.+.+.++.++......|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++..-..+|.+++.+
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 99999999988887566678999999999999765 55456678999999999999655 554556677776543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.71 E-value=1.7e-05 Score=61.75 Aligned_cols=87 Identities=11% Similarity=0.146 Sum_probs=46.5
Q ss_pred CCCccEeeeeccccCC----CCCccCcCCCCcceEecccCCCccc----cchhhcCCcccceeecccc---cCCC----C
Q 023193 177 LPFLEILSLSQNMFHG----GIPSTLSNCTYLQKLSLPYNDFSGA----IPKEIGNLNKLKRLYLGRN---RLQG----E 241 (286)
Q Consensus 177 l~~L~~L~l~~n~l~~----~~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n---~l~~----~ 241 (286)
-+.|+.|+|++|.+.+ .+.+.+..-+.|++|+|+.|.+.+. +-..+..-+.|++|+|++| .+.. .
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 3445555555554432 2223333345566666666666542 2233344456777777654 2232 2
Q ss_pred chhhhcCCCCCCEEecccCccc
Q 023193 242 IPQEFGNLAELEQMSLSENKLQ 263 (286)
Q Consensus 242 ~~~~~~~l~~L~~L~l~~n~l~ 263 (286)
+...+...+.|+.|+++.|.+.
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhCCCcCeEeccCCCcc
Confidence 4456667777888888777653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.65 E-value=4.3e-05 Score=59.49 Aligned_cols=108 Identities=14% Similarity=0.080 Sum_probs=77.7
Q ss_pred cCCCCccEeeeecc-ccCC----CCCccCcCCCCcceEecccCCCcccc----chhhcCCcccceeecccccCCCC----
Q 023193 175 SNLPFLEILSLSQN-MFHG----GIPSTLSNCTYLQKLSLPYNDFSGAI----PKEIGNLNKLKRLYLGRNRLQGE---- 241 (286)
Q Consensus 175 ~~l~~L~~L~l~~n-~l~~----~~p~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~---- 241 (286)
..-+.|++|++++| .|.. .+.+.+..-+.|+.|+|++|++.+.. ...+..-+.|++|+|++|.|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45677888888775 6643 24455666788999999999998643 34445568899999999999864
Q ss_pred chhhhcCCCCCCEEecccC---ccccc----chHHHhhccCCCceeee
Q 023193 242 IPQEFGNLAELEQMSLSEN---KLQGM----IINFLQFYSSSACFCIR 282 (286)
Q Consensus 242 ~~~~~~~l~~L~~L~l~~n---~l~~~----~~~~l~~l~~l~~l~l~ 282 (286)
+.+++...+.|+.|+|++| .+... +...+..-+.+..++++
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 4566777788999999865 44443 44566666777766654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.23 E-value=0.00048 Score=49.93 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=36.9
Q ss_pred EeeeeccccC-CCCCccCcCCCCcceEecccCCCccccchhhcCCcccceeecccccCC
Q 023193 182 ILSLSQNMFH-GGIPSTLSNCTYLQKLSLPYNDFSGAIPKEIGNLNKLKRLYLGRNRLQ 239 (286)
Q Consensus 182 ~L~l~~n~l~-~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 239 (286)
.++.+++.++ ..+|..+. +++++|+|++|+++...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666776665 24454332 35777777777777665666777777777777777664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.78 E-value=0.0019 Score=46.68 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=17.0
Q ss_pred CCEEEeecCCCCCCCchhhhcCCCCccEeeeecccc
Q 023193 155 LQLLDFAHNTLSDEIPANICSNLPFLEILSLSQNMF 190 (286)
Q Consensus 155 L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l 190 (286)
|++|+|++|.++ .++...|..+++|++|+|.+|.+
T Consensus 33 l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 455555555554 44444444444455444444433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=63.68 E-value=25 Score=23.35 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=23.7
Q ss_pred CcccCchhccCCCCCCEEEcccCCCCccCchhhhcCCCCcEEEccC
Q 023193 93 LTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFGTYTLKYVNFRE 138 (286)
Q Consensus 93 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 138 (286)
++..-...|.++.+|+.+.+..+ ++.+....|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344455666666666666543 2323444555566666555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.33 E-value=13 Score=24.80 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=27.7
Q ss_pred CCCccCchhhhcCCCCcEEEccCCCCCccCCccccCCCCCCEEEeec
Q 023193 116 QLSGSIPSAIFGTYTLKYVNFRENQLSGAFPSLIFNKSSLQLLDFAH 162 (286)
Q Consensus 116 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 162 (286)
.++.+....|.++.+|+.+.+..+ ++......|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 444445566677777777776654 3334555666666666666654
Done!