BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023194
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 57 LHHYMTDLAAKHGTYRLLGPF-RSEVYSSDPANVEYMLKTNFDNYGKGSYNYSILKDLLG 115
L D A K+G + F ++ V + P +V+ L + Y K S Y L+ + G
Sbjct: 12 LQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMST--KYNKDSKMYRALQTVFG 69
Query: 116 DGIF------TVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDK 169
+ +F + E+W +QR++ FS L F + A +L ++L A+
Sbjct: 70 ERLFGQGLVSECNYERWHKQRRVIDLAFSRSSLVSLMET-FNEKAEQLVEILEAKADGQT 128
Query: 170 ILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNE 202
+ +QD+ + +D + K AFG+E + G+ +
Sbjct: 129 PVSMQDMLTYTAMDILAKAAFGMETSMLLGAQK 161
>pdb|1N97|A Chain A, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
pdb|1N97|B Chain B, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
Length = 389
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 85 DPANVEYMLKTNFDNYGKGSYNYSILKDLLGDGIFTVDGEKWREQRKISSHEFSTKVLRD 144
DP VE L + K ++ Y L L G G+ T GE W+E RK F K +R
Sbjct: 48 DPEGVEGALLA--EGTTKATFQYRALSRLTGRGLLTDWGESWKEARKALKDPFLPKNVRG 105
Query: 145 FSSA 148
+ A
Sbjct: 106 YREA 109
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 10/170 (5%)
Query: 114 LGDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDI 173
+ I + E+W+ R + S F++ L++ + L + L A + K + +
Sbjct: 94 MKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMV-PIIAQYGDVLVRNLRREAETGKPVTL 152
Query: 174 QDLFMKSTLDSIFKVAFGVELDSVCGSNE---EGTRFSSAFDDASAMTLWRYVDIFW-KI 229
+D+F ++D I +FGV +DS+ + E T+ FD L V F I
Sbjct: 153 KDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPI 212
Query: 230 KKLLNIGSEARLKQRIEVIDTFVYKIIRKKTDQMHDFQEEYTSVSQILYE 279
++LNI R EV + + R K ++ D Q+ Q++ +
Sbjct: 213 LEVLNICVFPR-----EVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMID 257
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 10/167 (5%)
Query: 117 GIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDL 176
I + E+W+ R + S F++ L++ + L + L A + K + ++D+
Sbjct: 96 AISIAEDEEWKRLRSLLSPTFTSGKLKEMV-PIIAQYGDVLVRNLRREAETGKPVTLKDV 154
Query: 177 FMKSTLDSIFKVAFGVELDSVCGSNE---EGTRFSSAFDDASAMTLWRYVDIFW-KIKKL 232
F ++D I +FGV +DS+ + E T+ FD L V F I ++
Sbjct: 155 FGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEV 214
Query: 233 LNIGSEARLKQRIEVIDTFVYKIIRKKTDQMHDFQEEYTSVSQILYE 279
LNI R EV + + R K ++ D Q+ Q++ +
Sbjct: 215 LNICVFPR-----EVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMID 256
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 10/167 (5%)
Query: 117 GIFTVDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSDKILDIQDL 176
I + E+W+ R + S F++ L++ + L + L A + K + ++D+
Sbjct: 95 AISIAEDEEWKRLRSLLSPTFTSGKLKEMV-PIIAQYGDVLVRNLRREAETGKPVTLKDV 153
Query: 177 FMKSTLDSIFKVAFGVELDSVCGSNE---EGTRFSSAFDDASAMTLWRYVDIFW-KIKKL 232
F ++D I +FGV +DS+ + E T+ FD L V F I ++
Sbjct: 154 FGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEV 213
Query: 233 LNIGSEARLKQRIEVIDTFVYKIIRKKTDQMHDFQEEYTSVSQILYE 279
LNI R EV + + R K ++ D Q+ Q++ +
Sbjct: 214 LNICVFPR-----EVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMID 255
>pdb|4DU2|B Chain B, Cytochrome P450 Bm3h-B7 Mri Sensor Bound To Dopamine
pdb|4DU2|A Chain A, Cytochrome P450 Bm3h-B7 Mri Sensor Bound To Dopamine
Length = 470
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++DL GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 79 VRDLAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGY-HAMMVDIAVQLVQKW-ERLNA 136
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 137 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 183
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 184 EAMNKLRRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 232
>pdb|3CBD|A Chain A, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
pdb|3CBD|B Chain B, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
Length = 455
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 111 KDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANSD 168
+D GDG+FT + W++ I FS + ++ + A A +L Q E N+D
Sbjct: 79 RDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNAD 136
Query: 169 KILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVDI 225
+ +++ + + TLD+I +CG N RF+S + D +++ R +D
Sbjct: 137 EYIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFIISMIRALDE 183
Query: 226 FWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 184 VMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 115 GDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSA--AFRKNAAKLAQLLSEAANSDK--I 170
G G+ +GE+WR R+ FS +RDF + + + A+ L E K +
Sbjct: 91 GYGVIFANGERWRALRR-----FSLATMRDFGMGKRSVEERIQEEARCLVEELRKSKGAL 145
Query: 171 LDIQDLFMKSTLDSIFKVAFGVELD 195
LD LF T + I + FG D
Sbjct: 146 LDNTLLFHSITSNIICSIVFGKRFD 170
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 115 GDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSA--AFRKNAAKLAQLLSEAANSDK--I 170
G G+ +GE+WR R+ FS +RDF + + + A+ L E K +
Sbjct: 91 GYGVIFANGERWRALRR-----FSLATMRDFGMGKRSVEERIQEEARCLVEELRKSKGAL 145
Query: 171 LDIQDLFMKSTLDSIFKVAFGVELD 195
LD LF T + I + FG D
Sbjct: 146 LDNTLLFHSITSNIICSIVFGKRFD 170
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 115 GDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSA--AFRKNAAKLAQLLSEAANSDK--I 170
G G+ +GE+WR R+ FS +RDF + + + A+ L E K +
Sbjct: 91 GYGVIFANGERWRALRR-----FSLATMRDFGMGKRSVEERIQEEARCLVEELRKSKGAL 145
Query: 171 LDIQDLFMKSTLDSIFKVAFGVELD 195
LD LF T + I + FG D
Sbjct: 146 LDNTLLFHSITSNIICSIVFGKRFD 170
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 115 GDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSA--AFRKNAAKLAQLLSEAANSDK--I 170
G G+ +GE+WR R+ FS +RDF + + + A+ L E K +
Sbjct: 91 GYGVIFANGERWRALRR-----FSLATMRDFGMGKRSVEERIQEEARCLVEELRKSKGAL 145
Query: 171 LDIQDLFMKSTLDSIFKVAFGVELD 195
LD LF T + I + FG D
Sbjct: 146 LDNTLLFHSITSNIICSIVFGKRFD 170
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 115 GDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSA--AFRKNAAKLAQLLSEAANSDK--I 170
G G+ +GE+WR R+ FS +RDF + + + A+ L E K +
Sbjct: 91 GYGVIFANGERWRALRR-----FSLATMRDFGMGKRSVEERIQEEARCLVEELRKSKGAL 145
Query: 171 LDIQDLFMKSTLDSIFKVAFGVELD 195
LD LF T + I + FG D
Sbjct: 146 LDNTLLFHSITSNIICSIVFGKRFD 170
>pdb|2UWH|A Chain A, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|B Chain B, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|C Chain C, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|D Chain D, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|E Chain E, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|F Chain F, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
Length = 458
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFFGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|4DTW|B Chain B, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Serotonin
pdb|4DTW|A Chain A, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Serotonin
pdb|4DTY|B Chain B, Cytochrome P450 Bm3h-8c8 Mri Sensor, No Ligand
pdb|4DTY|A Chain A, Cytochrome P450 Bm3h-8c8 Mri Sensor, No Ligand
pdb|4DTZ|A Chain A, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Dopamine
pdb|4DTZ|B Chain B, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Dopamine
Length = 469
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLRRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|3PSX|A Chain A, Crystal Structure Of The Kt2 Mutant Of Cytochrome P450 Bm3
pdb|3PSX|B Chain B, Crystal Structure Of The Kt2 Mutant Of Cytochrome P450 Bm3
Length = 487
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 84 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 141
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 142 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 188
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 189 EAMNKLQRTNPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 237
>pdb|2IJ3|A Chain A, Structure Of The A264h Mutant Of Cytochrome P450 Bm3
pdb|2IJ3|B Chain B, Structure Of The A264h Mutant Of Cytochrome P450 Bm3
Length = 470
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|3EKB|A Chain A, Crystal Structure Of The A264c Mutant Heme Domain Of
Cytochrome P450 Bm3
pdb|3EKB|B Chain B, Crystal Structure Of The A264c Mutant Heme Domain Of
Cytochrome P450 Bm3
Length = 470
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|4DUB|A Chain A, Cytochrome P450 Bm3h-9d7 Mri Sensor Bound To Dopamine
pdb|4DUB|B Chain B, Cytochrome P450 Bm3h-9d7 Mri Sensor Bound To Dopamine
Length = 472
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 79 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 136
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 137 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 183
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 184 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 232
>pdb|4DUA|A Chain A, Cytochrome P450 Bm3h-9d7 Mri Sensor, No Ligand
pdb|4DUA|B Chain B, Cytochrome P450 Bm3h-9d7 Mri Sensor, No Ligand
Length = 471
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|3BEN|A Chain A, Structure Of N-(12-Imidazolyl-Dodecanoyl)-L-Leucine
Inhibitor Bound To The Heme Domain Of Cytochrome
P450-Bm3
pdb|3BEN|B Chain B, Structure Of N-(12-Imidazolyl-Dodecanoyl)-L-Leucine
Inhibitor Bound To The Heme Domain Of Cytochrome
P450-Bm3
Length = 470
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 79 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 136
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 137 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 183
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 184 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 232
>pdb|1SMI|A Chain A, A Single Mutation Of P450 Bm3 Induces The Conformational
Rearrangement Seen Upon Substrate-Binding In Wild-Type
Enzyme
pdb|1SMI|B Chain B, A Single Mutation Of P450 Bm3 Induces The Conformational
Rearrangement Seen Upon Substrate-Binding In Wild-Type
Enzyme
pdb|1SMJ|A Chain A, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|B Chain B, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|C Chain C, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|D Chain D, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
Length = 471
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|1JPZ|A Chain A, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1JPZ|B Chain B, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1ZO9|A Chain A, Crystal Structure Of The Wild Type Heme Domain Of P450bm-3
With N- Palmitoylmethionine
pdb|1ZO9|B Chain B, Crystal Structure Of The Wild Type Heme Domain Of P450bm-3
With N- Palmitoylmethionine
Length = 473
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 81 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 138
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 139 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 185
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 186 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 234
>pdb|3EKF|A Chain A, Crystal Structure Of The A264q Heme Domain Of Cytochrome
P450 Bm3
pdb|3EKF|B Chain B, Crystal Structure Of The A264q Heme Domain Of Cytochrome
P450 Bm3
Length = 470
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|2IJ2|A Chain A, Atomic Structure Of The Heme Domain Of Flavocytochrome
P450- Bm3
pdb|2IJ2|B Chain B, Atomic Structure Of The Heme Domain Of Flavocytochrome
P450- Bm3
Length = 470
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|1YQP|A Chain A, T268n Mutant Cytochrome Domain Of Flavocytochrome P450 Bm3
pdb|1YQP|B Chain B, T268n Mutant Cytochrome Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|3KX4|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX4|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|3EKD|A Chain A, Crystal Structure Of The A264m Heme Domain Of Cytochrome
P450 Bm3
pdb|3EKD|B Chain B, Crystal Structure Of The A264m Heme Domain Of Cytochrome
P450 Bm3
Length = 470
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|2IJ4|A Chain A, Structure Of The A264k Mutant Of Cytochrome P450 Bm3
pdb|2IJ4|B Chain B, Structure Of The A264k Mutant Of Cytochrome P450 Bm3
Length = 470
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|1ZOA|A Chain A, Crystal Structure Of A328v Mutant Of The Heme Domain Of
P450bm-3 With N-Palmitoylglycine
pdb|1ZOA|B Chain B, Crystal Structure Of A328v Mutant Of The Heme Domain Of
P450bm-3 With N-Palmitoylglycine
Length = 473
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 81 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 138
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 139 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 185
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 186 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 234
>pdb|3KX5|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX5|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|3HF2|A Chain A, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
pdb|3HF2|B Chain B, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
Length = 482
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 79 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 136
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 137 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 183
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 184 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 232
>pdb|1P0X|A Chain A, F393y Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0X|B Chain B, F393y Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|1BVY|A Chain A, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
pdb|1BVY|B Chain B, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
Length = 458
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|2HPD|A Chain A, Crystal Structure Of Hemoprotein Domain Of P450bm-3, A
Prototype For Microsomal P450's
pdb|2HPD|B Chain B, Crystal Structure Of Hemoprotein Domain Of P450bm-3, A
Prototype For Microsomal P450's
pdb|1FAG|A Chain A, Structure Of Cytochrome P450
pdb|1FAG|B Chain B, Structure Of Cytochrome P450
pdb|1FAG|C Chain C, Structure Of Cytochrome P450
pdb|1FAG|D Chain D, Structure Of Cytochrome P450
Length = 471
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|1ZO4|A Chain A, Crystal Structure Of A328s Mutant Of The Heme Domain Of
P450bm-3
pdb|1ZO4|B Chain B, Crystal Structure Of A328s Mutant Of The Heme Domain Of
P450bm-3
Length = 473
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 81 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 138
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 139 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 185
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 186 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 234
>pdb|3M4V|A Chain A, Crystal Structure Of The A330p Mutant Of Cytochrome P450
Bm3
pdb|3M4V|B Chain B, Crystal Structure Of The A330p Mutant Of Cytochrome P450
Bm3
Length = 482
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 79 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 136
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 137 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 183
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 184 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 232
>pdb|2NNB|A Chain A, The Q403k Mutnat Heme Domain Of Flavocytochrome P450 Bm3
pdb|2NNB|B Chain B, The Q403k Mutnat Heme Domain Of Flavocytochrome P450 Bm3
Length = 471
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|1JME|A Chain A, Crystal Structure Of Phe393his Cytochrome P450 Bm3
pdb|1JME|B Chain B, Crystal Structure Of Phe393his Cytochrome P450 Bm3
Length = 455
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|1P0W|A Chain A, F393w Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0W|B Chain B, F393w Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDD 213
D+ +++ + + TLD+I +CG N RF+S + D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRD 168
>pdb|1YQO|A Chain A, T268a Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1YQO|B Chain B, T268a Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|2BMH|A Chain A, Modeling Protein-Substrate Interactions In The Heme Domain
Of Cytochrome P450bm-3
pdb|2BMH|B Chain B, Modeling Protein-Substrate Interactions In The Heme Domain
Of Cytochrome P450bm-3
pdb|1BU7|A Chain A, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|1BU7|B Chain B, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|2J1M|A Chain A, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J1M|B Chain B, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J4S|A Chain A, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J4S|B Chain B, P450 Bm3 Heme Domain In Complex With Dmso
Length = 455
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|1FAH|A Chain A, Structure Of Cytochrome P450
pdb|1FAH|B Chain B, Structure Of Cytochrome P450
Length = 471
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|1P0V|A Chain A, F393a Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0V|B Chain B, F393a Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|3QI8|B Chain B, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
pdb|3QI8|A Chain A, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
Length = 472
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+ T + W++ R I S + ++ + A A +L Q E NS
Sbjct: 79 VRDFAGDGLATSWTHEKNWKKARNILLPRLSQQAMKGYH-AMMVDIAVQLVQKW-ERLNS 136
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDS 196
D+ +++ + + TLD+I F ++S
Sbjct: 137 DEHIEVPEDMTRLTLDTIGLCGFNYRINS 165
>pdb|3KX3|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX3|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG FT + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGEFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|4DUD|A Chain A, Cytochrome P450 Bm3h-2g9c6 Mri Sensor, No Ligand
pdb|4DUD|B Chain B, Cytochrome P450 Bm3h-2g9c6 Mri Sensor, No Ligand
pdb|4DUE|A Chain A, Cytochrome P450 Bm3h-2g9c6 Mri Sensor Bound To Serotonin
pdb|4DUE|B Chain B, Cytochrome P450 Bm3h-2g9c6 Mri Sensor Bound To Serotonin
Length = 471
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 51 LLNFNRLHHYMTDLAAKHG-TYRLLGPFRSEVY-SSDPANVEYMLKTNFDNYGKGSYNYS 108
LLN ++ + +A + G ++ P R Y SS E ++ FD S
Sbjct: 19 LLNTDKPVQALMKIADELGEIFKFEAPGRVTCYLSSQRLIKEACDESRFDK--NLSQALK 76
Query: 109 ILKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAAN 166
++D GDG+ T + W++ I FS + ++ + A A +L Q E N
Sbjct: 77 FVRDFAGDGLLTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLN 134
Query: 167 SDKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYV 223
+D+ +++ + + TLD+I +CG N RF+S + D ++ R +
Sbjct: 135 ADEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRAL 181
Query: 224 DIFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
D + N A + ++ I+V++ V KII RK + + D
Sbjct: 182 DEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|4DUF|A Chain A, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|B Chain B, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|C Chain C, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|D Chain D, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
Length = 471
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+ T + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLLTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|4DUC|A Chain A, Cytochrome P450 Bm3h-2g9 Mri Sensor, No Ligand
pdb|4DUC|B Chain B, Cytochrome P450 Bm3h-2g9 Mri Sensor, No Ligand
Length = 472
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 51 LLNFNRLHHYMTDLAAKHG-TYRLLGPFRSEVY-SSDPANVEYMLKTNFDNYGKGSYNYS 108
LLN ++ + +A + G ++ P R Y SS E ++ FD S
Sbjct: 20 LLNTDKPVQALMKIADELGEIFKFEAPGRVTCYLSSQRLIKEACDESRFDK--NLSQALK 77
Query: 109 ILKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAAN 166
++D GDG+ T + W++ I FS + ++ + A A +L Q E N
Sbjct: 78 FVRDFAGDGLLTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLN 135
Query: 167 SDKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYV 223
+D+ +++ + + TLD+I +CG N RF+S + D ++ R +
Sbjct: 136 ADEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRAL 182
Query: 224 DIFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
D + N A + ++ I+V++ V KII RK + + D
Sbjct: 183 DEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 232
>pdb|3OPB|A Chain A, Crystal Structure Of She4p
pdb|3OPB|B Chain B, Crystal Structure Of She4p
Length = 778
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 42 PIGGTVFNQLLNFNRLHHYMTDLAAKHGTYRLLGPFRSEVYSSDPANVEYMLKTNFDNYG 101
P +F ++L+ + +H ++ + K T LL + ++ + +V Y+L
Sbjct: 103 PFALNLF-EILSRSSIHVFVGCFSNKDATIALLNELQIRIHYGEDTHVTYLLSIILQLLN 161
Query: 102 KGSYNYSILKDLLGDGIFTVDGEKWREQRKISSHEFSTKVLRDFSSAA 149
K YN+ ++ L+ + I + ++ + I E + +DF A
Sbjct: 162 KFKYNFKEVRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAV 209
>pdb|2X7Y|A Chain A, P450 Bm3 F87a In Complex With Dmso
pdb|2X7Y|B Chain B, P450 Bm3 F87a In Complex With Dmso
pdb|2X80|A Chain A, P450 Bm3 F87a In Complex With Dmso
pdb|2X80|B Chain B, P450 Bm3 F87a In Complex With Dmso
Length = 455
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+ T + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|3DGI|A Chain A, Crystal Structure Of F87aT268A MUTANT OF CYP BM3
pdb|3DGI|B Chain B, Crystal Structure Of F87aT268A MUTANT OF CYP BM3
Length = 461
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 110 LKDLLGDGIFT--VDGEKWREQRKISSHEFSTKVLRDFSSAAFRKNAAKLAQLLSEAANS 167
++D GDG+ T + W++ I FS + ++ + A A +L Q E N+
Sbjct: 78 VRDFAGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKW-ERLNA 135
Query: 168 DKILDIQDLFMKSTLDSIFKVAFGVELDSVCGSNEEGTRFSSAFDDAS---AMTLWRYVD 224
D+ +++ + + TLD+I +CG N RF+S + D ++ R +D
Sbjct: 136 DEHIEVPEDMTRLTLDTI----------GLCGFN---YRFNSFYRDQPHPFITSMVRALD 182
Query: 225 IFWKIKKLLNIGSEA------RLKQRIEVIDTFVYKII--RKKTDQMHD 265
+ N A + ++ I+V++ V KII RK + + D
Sbjct: 183 EAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSD 231
>pdb|2A2Y|A Chain A, Nmr Structue Of Sso10b2 From Sulfolobus Solfataricus
pdb|2A2Y|B Chain B, Nmr Structue Of Sso10b2 From Sulfolobus Solfataricus
Length = 89
Score = 27.7 bits (60), Expect = 7.3, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 90 EYMLKTNFDNYGKGSYNYSILKDLLGDGIFTVD---GEKWREQRKIS 133
E +LK K Y+ LKD LGDG+ V+ G + R++R+IS
Sbjct: 33 EVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEVRDRRRIS 79
>pdb|1UDV|A Chain A, Crystal Structure Of The Hyperthermophilic Archaeal
Dna-Binding Protein Sso10b2 At 1.85 A
pdb|1UDV|B Chain B, Crystal Structure Of The Hyperthermophilic Archaeal
Dna-Binding Protein Sso10b2 At 1.85 A
pdb|2BKY|X Chain X, Crystal Structure Of The Alba1:alba2 Heterodimer From
Sulfolobus Solfataricus
pdb|2BKY|Y Chain Y, Crystal Structure Of The Alba1:alba2 Heterodimer From
Sulfolobus Solfataricus
Length = 89
Score = 27.7 bits (60), Expect = 7.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 90 EYMLKTNFDNYGKGSYNYSILKDLLGDGIFTVD---GEKWREQRKIS 133
E +LK K Y+ LKD LGDG+ V+ G + R++R+IS
Sbjct: 33 EVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEVRDRRRIS 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,825,244
Number of Sequences: 62578
Number of extensions: 311006
Number of successful extensions: 718
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 57
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)