BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023195
         (286 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K3C|A Chain A, Structural And Functional Characterization Of Tm Ix Of
          The Nhe1 Isoform Of The Na+H+ EXCHANGER
          Length = 33

 Score = 32.7 bits (73), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 21/26 (80%)

Query: 5  AYLSYMLAELFYLSGILTVFFCGIVM 30
          +Y++Y+ AELF+LSGI+ +   G+VM
Sbjct: 3  SYMAYLSAELFHLSGIMALIASGVVM 28


>pdb|2V3M|A Chain A, Structure Of The Gar1 Domain Of Naf1
 pdb|2V3M|B Chain B, Structure Of The Gar1 Domain Of Naf1
 pdb|2V3M|C Chain C, Structure Of The Gar1 Domain Of Naf1
 pdb|2V3M|D Chain D, Structure Of The Gar1 Domain Of Naf1
 pdb|2V3M|E Chain E, Structure Of The Gar1 Domain Of Naf1
 pdb|2V3M|F Chain F, Structure Of The Gar1 Domain Of Naf1
          Length = 131

 Score = 30.8 bits (68), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 120 EKISIKQQVIIWWAGLMRGAVSMALAYNQFTRSGHTQ-LRENAIMITSTITVVLFSTVVF 178
           E   I ++ II   G+++ A    +  +  T SG  + L+E +I      T++   T VF
Sbjct: 20  EDYEISEKTIITPIGVLKSAFENNIIIHA-TXSGEKRVLKEGSIFCLEDRTLIGXLTEVF 78

Query: 179 GLMTKPLIRLLLPHPKHT 196
           G +  P  R+ LP  K  
Sbjct: 79  GPLQNPFYRIKLPDSKKN 96


>pdb|1ZG6|A Chain A, Tem1 Beta Lactamase Mutant S70g
          Length = 286

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 13/54 (24%)

Query: 8   SYMLAELFYLSGILTVFFCGIVMS-------------HYTWHNVTESSRVTTKH 48
           S+   E F + G   V  CG V+S             HY+ +++ E S VT KH
Sbjct: 57  SFRPEERFPMMGTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKH 110


>pdb|2GQX|A Chain A, Crystal Structure Of Cytochrome P450cam Mutant
           (F87wY96FL244AV247LC334A) WITH PENTACHLOROBENZENE
 pdb|2GQX|B Chain B, Crystal Structure Of Cytochrome P450cam Mutant
           (F87wY96FL244AV247LC334A) WITH PENTACHLOROBENZENE
 pdb|2GR6|A Chain A, Crystal Structure Of Cytochrome P450cam Mutant
           (F87wY96FL244AV247LC334A)
 pdb|2GR6|B Chain B, Crystal Structure Of Cytochrome P450cam Mutant
           (F87wY96FL244AV247LC334A)
          Length = 405

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 24/56 (42%)

Query: 66  GMDALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVFPLSFLTNLAKKSPTEK 121
           G DA+ I     V G P TS  A  M   L++ G    V  LSF      KSP  +
Sbjct: 207 GTDAISIVANGQVNGRPITSDEAKRMCGALLLGGLDTVVNFLSFSMEFLAKSPEHR 262


>pdb|2CP4|A Chain A, Crystal Structure Of The Cytochrome P450-Cam Active Site
           Mutant Thr252ala
          Length = 414

 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 25/56 (44%)

Query: 66  GMDALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVFPLSFLTNLAKKSPTEK 121
           G DA+ I     V G P TS  A  M   L++ G  A V  LSF      KSP  +
Sbjct: 216 GTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDAVVNFLSFSMEFLAKSPEHR 271


>pdb|2A1O|A Chain A, Crystal Structure Of Ferrous Dioxygen Complex Of T252a
           Cytochrome P450cam
 pdb|2A1O|B Chain B, Crystal Structure Of Ferrous Dioxygen Complex Of T252a
           Cytochrome P450cam
          Length = 415

 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 25/56 (44%)

Query: 66  GMDALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVFPLSFLTNLAKKSPTEK 121
           G DA+ I     V G P TS  A  M   L++ G  A V  LSF      KSP  +
Sbjct: 217 GTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDAVVNFLSFSMEFLAKSPEHR 272


>pdb|2H7R|A Chain A, L244a Mutant Of Cytochrome P450cam Complexed With
           Imidazole
 pdb|2H7S|A Chain A, L244a Mutant Of Cytochrome P450cam
 pdb|2H7S|C Chain C, L244a Mutant Of Cytochrome P450cam
          Length = 414

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 24/56 (42%)

Query: 66  GMDALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVFPLSFLTNLAKKSPTEK 121
           G DA+ I     V G P TS  A  M   L++ G    V  LSF      KSP  +
Sbjct: 216 GTDAISIVANGQVNGRPITSDEAKRMCGALLVGGLDTVVNFLSFSMEFLAKSPEHR 271


>pdb|3FWG|A Chain A, Ferric Camphor Bound Cytochrome P450cam, Arg365leu,
           Glu366gln, Monoclinic Crystal Form
 pdb|3FWG|B Chain B, Ferric Camphor Bound Cytochrome P450cam, Arg365leu,
           Glu366gln, Monoclinic Crystal Form
          Length = 405

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 27/62 (43%)

Query: 66  GMDALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVFPLSFLTNLAKKSPTEKISIK 125
           G DA+ I     V G P TS  A  M   L++ G    V  LSF      KSP  +  + 
Sbjct: 207 GTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELI 266

Query: 126 QQ 127
           Q+
Sbjct: 267 QR 268


>pdb|1DZ8|A Chain A, Oxygen Complex Of P450cam From Pseudomonas Putida
 pdb|1DZ8|B Chain B, Oxygen Complex Of P450cam From Pseudomonas Putida
 pdb|1DZ6|A Chain A, Ferrous P450cam From Pseudomonas Putida
 pdb|1DZ6|B Chain B, Ferrous P450cam From Pseudomonas Putida
 pdb|1DZ9|A Chain A, Putative Oxo Complex Of P450cam From Pseudomonas Putida
 pdb|1DZ9|B Chain B, Putative Oxo Complex Of P450cam From Pseudomonas Putida
 pdb|1DZ4|A Chain A, Ferric P450cam From Pseudomonas Putida
 pdb|1DZ4|B Chain B, Ferric P450cam From Pseudomonas Putida
 pdb|1O76|A Chain A, Cyanide Complex Of P450cam From Pseudomonas Putida
 pdb|1O76|B Chain B, Cyanide Complex Of P450cam From Pseudomonas Putida
 pdb|1UYU|A Chain A, Xenon Complex Of Wildtype P450cam From Pseudomonas Putida
 pdb|1UYU|B Chain B, Xenon Complex Of Wildtype P450cam From Pseudomonas Putida
 pdb|1AKD|A Chain A, Cytochrome P450cam From Pseudomonas Putida, Complexed With
           1s-Camphor
          Length = 414

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 27/62 (43%)

Query: 66  GMDALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVFPLSFLTNLAKKSPTEKISIK 125
           G DA+ I     V G P TS  A  M   L++ G    V  LSF      KSP  +  + 
Sbjct: 216 GTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELI 275

Query: 126 QQ 127
           Q+
Sbjct: 276 QR 277


>pdb|3FWF|A Chain A, Ferric Camphor Bound Cytochrome P450cam Containing A
           Selenocysteine As The 5th Heme Ligand, Monoclinic
           Crystal Form
 pdb|3FWF|B Chain B, Ferric Camphor Bound Cytochrome P450cam Containing A
           Selenocysteine As The 5th Heme Ligand, Monoclinic
           Crystal Form
          Length = 405

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 27/62 (43%)

Query: 66  GMDALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVFPLSFLTNLAKKSPTEKISIK 125
           G DA+ I     V G P TS  A  M   L++ G    V  LSF      KSP  +  + 
Sbjct: 207 GTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELI 266

Query: 126 QQ 127
           Q+
Sbjct: 267 QR 268


>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
 pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
 pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
 pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
          Length = 259

 Score = 27.7 bits (60), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 185 LIRLLLPHPKHTTNHILSDPSTPKS-LSQPLLE--EGQQDSYADLGGPTVPRPGSLRALL 241
           L+  LL H K  T+    +PST K+ L + LL    G+ D+   L      R G++R  +
Sbjct: 22  LLPFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSNGRNDTIPVLLD-IAERTGNMREFI 80

Query: 242 TTPTHTVHY 250
            +P   ++Y
Sbjct: 81  NSPFRDIYY 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,202,297
Number of Sequences: 62578
Number of extensions: 312830
Number of successful extensions: 794
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 786
Number of HSP's gapped (non-prelim): 14
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)