Query 023195
Match_columns 286
No_of_seqs 270 out of 1263
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k3c_A TMIX peptide; membrane 98.9 6.1E-12 2.1E-16 78.0 -6.6 32 3-34 1-32 (33)
2 2kbv_A Sodium/hydrogen exchang 98.3 2E-07 6.8E-12 55.1 2.1 24 125-149 2-25 (28)
3 1zcd_A Na(+)/H(+) antiporter 1 94.4 0.074 2.5E-06 50.1 6.9 134 6-149 213-350 (388)
4 2bec_B Sodium/hydrogen exchang 87.1 0.0068 2.3E-07 39.3 -5.9 38 186-229 1-38 (43)
5 3zux_A Transporter, ASBTNM; tr 42.2 1.4E+02 0.0049 26.6 9.7 29 120-149 252-282 (332)
6 1hzn_A CCK-A receptor, cholecy 13.5 89 0.003 18.2 1.5 20 248-267 4-23 (31)
7 4a17_K L29, RPL27A, 60S riboso 11.4 1.2E+02 0.004 24.3 2.2 29 247-276 39-67 (149)
8 2zkr_l 60S ribosomal protein L 9.1 60 0.002 25.9 -0.4 28 246-274 36-63 (148)
9 1gvn_A Epsilon; postsegregatio 9.1 87 0.003 22.9 0.5 17 246-263 67-83 (90)
10 2p64_A F-BOX/WD repeat protein 8.7 65 0.0022 21.3 -0.2 12 253-264 40-51 (52)
No 1
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=98.89 E-value=6.1e-12 Score=77.99 Aligned_cols=32 Identities=41% Similarity=0.721 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhhccchHHHHHHHHHHhcccc
Q 023195 3 LMAYLSYMLAELFYLSGILTVFFCGIVMSHYT 34 (286)
Q Consensus 3 l~aylsY~lAE~l~~SGIlAvv~~Gi~m~~y~ 34 (286)
++||++|++||.+|+|||+|+++||++|+||.
T Consensus 1 l~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~ 32 (33)
T 2k3c_A 1 XKSYMAYLSAELFHLSGIMALIASGVVMRPKK 32 (33)
T ss_dssp -CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC
T ss_pred ChhHHHHHHHHHhCcChHHHHHHHHHHHhhcc
Confidence 46899999999999999999999999999986
No 2
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=98.33 E-value=2e-07 Score=55.10 Aligned_cols=24 Identities=46% Similarity=0.699 Sum_probs=22.1
Q ss_pred hhhhhhhhcccchhHHHHHHHhhhh
Q 023195 125 KQQVIIWWAGLMRGAVSMALAYNQF 149 (286)
Q Consensus 125 ~~~~ii~w~GLmRGavslaLA~~~~ 149 (286)
++|++|||+|| ||||+++|++..+
T Consensus 2 ~~Q~i~~~~GL-RGAvafaL~~~l~ 25 (28)
T 2kbv_A 2 KDQFIIAYGGL-RGAIAFSLGYLLD 25 (28)
T ss_dssp CHHHHTTTTSS-CHHHHHHHHHHHH
T ss_pred CceeEEEeecc-hHHHHHHHHHhcc
Confidence 58999999998 9999999999875
No 3
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=94.37 E-value=0.074 Score=50.14 Aligned_cols=134 Identities=12% Similarity=0.137 Sum_probs=82.2
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHhccccccCCChhhHHHHHHHHHHHH--HHHHHHHHHHHhhcchhhhhhhhccCCCc
Q 023195 6 YLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHTFATLS--FVAEIFIFLYVGMDALDIEKWRFVKGSPG 83 (286)
Q Consensus 6 ylsY~lAE~l~~SGIlAvv~~Gi~m~~y~~~nls~~s~~~~~~f~~~ls--~l~e~~IF~~lGl~~~~~~~w~~~~~~~~ 83 (286)
...++.+|..|+..+++.|.+|+++.+..++..++ .+..+|-.+-++ ++.=.|-|...|+.+.... .+.. .
T Consensus 213 l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~--~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~-~~~l----~ 285 (388)
T 1zcd_A 213 VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSP--AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVT-LDGL----T 285 (388)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCH--HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSC-CCTH----H
T ss_pred HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCH--HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccc-hhhc----c
Confidence 35556668889999999999999999754322222 344555555544 3445555888999885321 0000 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCchhhhhhhh-cccchhHHHHHHHhhhh
Q 023195 84 TSVAASAMLMGLIMAGRAAFVFPLSFLTNLAKK-SPTEKISIKQQVIIWW-AGLMRGAVSMALAYNQF 149 (286)
Q Consensus 84 ~~~~~~~~~~~~~lv~R~l~V~~~~~l~n~~~~-~~~~~i~~~~~~ii~w-~GLmRGavslaLA~~~~ 149 (286)
..+. +.+.+.++++.++.++..+++.-+++. +..++.+|+|..-+++ +| +||.+++..+-.-+
T Consensus 286 ~~~~--lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~g-igftmsL~Ia~laf 350 (388)
T 1zcd_A 286 SILP--LGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCG-IGFTMSIFIASLAF 350 (388)
T ss_dssp HHSS--TTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTT-CCHHHHHHHHHHHS
T ss_pred ChHH--HHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhc-cchHHHHHHHHHhc
Confidence 0010 112334578999998887776543321 1234688999877666 78 59999998776543
No 4
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B
Probab=87.13 E-value=0.0068 Score=39.26 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=22.2
Q ss_pred HHHhCCCCCCCCCccCCCCCCCCCcccccccccccCCcCCCCCC
Q 023195 186 IRLLLPHPKHTTNHILSDPSTPKSLSQPLLEEGQQDSYADLGGP 229 (286)
Q Consensus 186 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 229 (286)
+++|.+++++. .+++..|+++.+++|+.+.| +||++|+
T Consensus 1 V~~L~Vkr~~~-----~~~t~~e~ih~~~~dhlmaG-iEdi~G~ 38 (43)
T 2bec_B 1 VDLLAVKKKQE-----TKRSINEEIHTQFLDHLLTG-IEDICGH 38 (43)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHH-HHHHHCC
T ss_pred Ccceeeecccc-----ccccHHHHHhhhhhhhhhhc-hHhhcCC
Confidence 35777766543 24566789999999999999 9999885
No 5
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=42.23 E-value=1.4e+02 Score=26.62 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=19.7
Q ss_pred CCCCchhhhhhhh-cccchhH-HHHHHHhhhh
Q 023195 120 EKISIKQQVIIWW-AGLMRGA-VSMALAYNQF 149 (286)
Q Consensus 120 ~~i~~~~~~ii~w-~GLmRGa-vslaLA~~~~ 149 (286)
-+.+.+++.-+++ +| +|-. .++++|...+
T Consensus 252 ~~~~~~~~~ti~~e~G-~qNs~lai~lA~~~F 282 (332)
T 3zux_A 252 TGLPYDAQKALTIEVG-MQNSGLAAALAAAHF 282 (332)
T ss_dssp TTCCHHHHHHHHHHHH-CCCHHHHHHHHHHHS
T ss_pred hCCCHhHhhhhhhhhh-hccHHHHHHHHHHHc
Confidence 3567889999999 88 6876 4444554443
No 6
>1hzn_A CCK-A receptor, cholecystokinin type A receptor; hormone/growth factor; NMR {Synthetic} SCOP: j.82.1.1
Probab=13.53 E-value=89 Score=18.24 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=14.7
Q ss_pred hhchHhhhhccccccccCCC
Q 023195 248 VHYYWRKFDDAFMRPVFGGR 267 (286)
Q Consensus 248 ~~~~w~~fd~~ymrp~f~~~ 267 (286)
+-+.|+.||.+=-.+-++|.
T Consensus 4 v~ntw~aFd~~~~~~~l~~~ 23 (31)
T 1hzn_A 4 SANAWRAYDTASAERRLSGT 23 (31)
T ss_dssp TTTTHHHHHTTSTTCSSSSS
T ss_pred EEeehhhcCchhhhhhcccc
Confidence 34679999987777766664
No 7
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=11.37 E-value=1.2e+02 Score=24.26 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=22.6
Q ss_pred hhhchHhhhhccccccccCCCCCCcCCCCC
Q 023195 247 TVHYYWRKFDDAFMRPVFGGRGFAPFVPGS 276 (286)
Q Consensus 247 ~~~~~w~~fd~~ymrp~f~~~~~~~~~~~~ 276 (286)
.-|+.|..||. |+--.||.+||..|.+..
T Consensus 39 g~~Hhr~~~~k-y~p~~fGK~Gfr~~h~~~ 67 (149)
T 4a17_K 39 GMHHHRILMEK-WHPGYYGKLGMRTFHLKK 67 (149)
T ss_dssp TTTTTHHHHHH-HSTTCSSCCSCCCSSCCC
T ss_pred CCcceEEeeec-cCCCcCCCCCccCCCccC
Confidence 45677999975 577789999999887654
No 8
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=9.11 E-value=60 Score=25.85 Aligned_cols=28 Identities=21% Similarity=0.333 Sum_probs=9.3
Q ss_pred chhhchHhhhhccccccccCCCCCCcCCC
Q 023195 246 HTVHYYWRKFDDAFMRPVFGGRGFAPFVP 274 (286)
Q Consensus 246 ~~~~~~w~~fd~~ymrp~f~~~~~~~~~~ 274 (286)
..-|+.|++||. |.--.|+.+||.++..
T Consensus 36 Ggq~h~~~~~~k-~~p~~lpK~GF~~~~~ 63 (148)
T 2zkr_l 36 GGMHHHRINFDK-YHPGYFGKVGMKHYHL 63 (148)
T ss_dssp TTTTTTCSSCTT-TC--------------
T ss_pred cCCCCCEEeccc-cCCCcCCCCCcCCCCc
Confidence 345667888876 6544689999997654
No 9
>1gvn_A Epsilon; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: a.8.2.1 PDB: 3q8x_A*
Probab=9.06 E-value=87 Score=22.89 Aligned_cols=17 Identities=35% Similarity=0.948 Sum_probs=12.1
Q ss_pred chhhchHhhhhccccccc
Q 023195 246 HTVHYYWRKFDDAFMRPV 263 (286)
Q Consensus 246 ~~~~~~w~~fd~~ymrp~ 263 (286)
..+|.|||..|+ |.|-+
T Consensus 67 ~~v~~YW~~Mn~-y~ksI 83 (90)
T 1gvn_A 67 QAVHEYWRSMNR-YSKQV 83 (90)
T ss_dssp HHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHH-HHHhc
Confidence 679999998864 44433
No 10
>2p64_A F-BOX/WD repeat protein 1A; right handed super-helical bundle, ligase; 2.50A {Homo sapiens}
Probab=8.74 E-value=65 Score=21.25 Aligned_cols=12 Identities=8% Similarity=0.575 Sum_probs=7.0
Q ss_pred hhhhcccccccc
Q 023195 253 RKFDDAFMRPVF 264 (286)
Q Consensus 253 ~~fd~~ymrp~f 264 (286)
+-+=|+|+||++
T Consensus 40 ~g~In~~L~PmL 51 (52)
T 2p64_A 40 HGHINSYLKPML 51 (52)
T ss_dssp HHHHHHHHGGGT
T ss_pred HHHHHhhccccc
Confidence 344456777765
Done!