Query 023195
Match_columns 286
No_of_seqs 270 out of 1263
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 17:56:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023195.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023195hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sr9a1 a.5.7.1 (A:437-491) 2- 17.8 14 0.001 23.1 0.3 15 248-262 41-55 (55)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 15.1 32 0.0023 19.3 1.3 16 19-34 20-35 (37)
3 d1wira_ g.37.1.5 (A:) Protein 12.5 19 0.0014 26.2 -0.3 17 252-270 83-99 (121)
4 d2r7ka1 c.30.1.8 (A:1-123) 5-f 9.8 55 0.004 23.6 1.6 21 251-271 100-120 (123)
5 d1tzya_ a.22.1.1 (A:) Histone 9.1 63 0.0046 22.6 1.7 21 2-22 38-58 (106)
6 d1u35c1 a.22.1.1 (C:814-919) m 8.1 91 0.0066 21.7 2.2 21 2-22 37-57 (106)
7 d2r85a1 c.30.1.8 (A:1-99) 5-fo 7.9 78 0.0057 21.9 1.7 20 248-268 74-93 (99)
8 d2yvxa3 f.57.1.1 (A:276-448) M 6.7 2E+02 0.014 21.4 3.8 31 163-193 114-144 (173)
9 d1gvna_ a.8.2.1 (A:) Plasmid m 6.6 62 0.0045 21.6 0.5 18 246-264 65-82 (88)
10 d2pbza1 c.30.1.8 (A:4-99) 5-fo 5.4 1.6E+02 0.011 20.1 2.1 29 244-273 63-93 (96)
No 1
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.78 E-value=14 Score=23.07 Aligned_cols=15 Identities=20% Similarity=0.749 Sum_probs=13.3
Q ss_pred hhchHhhhhcccccc
Q 023195 248 VHYYWRKFDDAFMRP 262 (286)
Q Consensus 248 ~~~~w~~fd~~ymrp 262 (286)
....|+-|.++|+.|
T Consensus 41 ~~~I~~~F~~~Yl~p 55 (55)
T d1sr9a1 41 PKEMWDAFAEEYLAP 55 (55)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcCC
Confidence 558899999999988
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.09 E-value=32 Score=19.32 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHhcccc
Q 023195 19 GILTVFFCGIVMSHYT 34 (286)
Q Consensus 19 GIlAvv~~Gi~m~~y~ 34 (286)
|.+-+++.|+.+++|-
T Consensus 20 GlLlifvl~vLFssYf 35 (37)
T d2axtl1 20 GLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7888999999988873
No 3
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.47 E-value=19 Score=26.19 Aligned_cols=17 Identities=24% Similarity=0.761 Sum_probs=13.5
Q ss_pred HhhhhccccccccCCCCCC
Q 023195 252 WRKFDDAFMRPVFGGRGFA 270 (286)
Q Consensus 252 w~~fd~~ymrp~f~~~~~~ 270 (286)
|. |++||+|++-....-
T Consensus 83 wd--dd~YL~PvledD~LL 99 (121)
T d1wira_ 83 WE--KDEYLKPVLEDDLLL 99 (121)
T ss_dssp TC--CHHHHSCSSSSCHHH
T ss_pred CC--CcccccccCCCCcce
Confidence 75 899999998776554
No 4
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=9.85 E-value=55 Score=23.62 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=17.9
Q ss_pred hHhhhhccccccccCCCCCCc
Q 023195 251 YWRKFDDAFMRPVFGGRGFAP 271 (286)
Q Consensus 251 ~w~~fd~~ymrp~f~~~~~~~ 271 (286)
-|+++.+++--|+||.|....
T Consensus 100 G~~~ie~~~~VP~FGnR~lLr 120 (123)
T d2r7ka1 100 GLDNVENSFLVPMFGNRRILR 120 (123)
T ss_dssp CHHHHHHTCCSCBBSCGGGGG
T ss_pred cHHHHHhcCCCCeecChhhhe
Confidence 389999999999999997543
No 5
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=9.15 E-value=63 Score=22.61 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHhhccchHHH
Q 023195 2 VLMAYLSYMLAELFYLSGILT 22 (286)
Q Consensus 2 ll~aylsY~lAE~l~~SGIlA 22 (286)
.+.+.+=|+.||.++++|=-|
T Consensus 38 ylaAVLEYLtaEiLELAgn~a 58 (106)
T d1tzya_ 38 YLAAVLEYLTAEILELAGNAA 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 356788899999999987544
No 6
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.07 E-value=91 Score=21.69 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHhhccchHHH
Q 023195 2 VLMAYLSYMLAELFYLSGILT 22 (286)
Q Consensus 2 ll~aylsY~lAE~l~~SGIlA 22 (286)
.+.+.+=|+.||.++++|-.|
T Consensus 37 ylaAVLEYL~aEILELAgn~a 57 (106)
T d1u35c1 37 YMAAVLEYLTAEILELAVNAA 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999998766
No 7
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=7.93 E-value=78 Score=21.86 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=15.8
Q ss_pred hhchHhhhhccccccccCCCC
Q 023195 248 VHYYWRKFDDAFMRPVFGGRG 268 (286)
Q Consensus 248 ~~~~w~~fd~~ymrp~f~~~~ 268 (286)
.+--|+++++ +-=|+||.|.
T Consensus 74 ~Y~G~d~ie~-~~VP~FGnR~ 93 (99)
T d2r85a1 74 AHLGIELVEN-MKVPYFGNKR 93 (99)
T ss_dssp HHHCHHHHHT-CCSCBBSCTT
T ss_pred EEEcHHHHhc-CCCCcccChh
Confidence 3334899985 9999999985
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=6.75 E-value=2e+02 Score=21.41 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhhhhcHHHHHHHhCCCC
Q 023195 163 MITSTITVVLFSTVVFGLMTKPLIRLLLPHP 193 (286)
Q Consensus 163 i~~~t~~vVl~S~lv~G~t~~pl~~~L~~~~ 193 (286)
.+..+..++...--+.|..+|-++++++.++
T Consensus 114 vi~~sl~~~~~ia~~~G~~lPlll~klg~DP 144 (173)
T d2yvxa3 114 VVGVSLVLIVFFANLVGAMLPFLLRRLGVDP 144 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 3333333333333345999999999999864
No 9
>d1gvna_ a.8.2.1 (A:) Plasmid maintenance system epsilon/zeta, antidote epsilon subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=6.59 E-value=62 Score=21.56 Aligned_cols=18 Identities=33% Similarity=0.927 Sum_probs=12.2
Q ss_pred chhhchHhhhhcccccccc
Q 023195 246 HTVHYYWRKFDDAFMRPVF 264 (286)
Q Consensus 246 ~~~~~~w~~fd~~ymrp~f 264 (286)
.++|.|||..+ +|-+-+.
T Consensus 65 eaiheYwrsmn-~y~~si~ 82 (88)
T d1gvna_ 65 QAVHEYWRSMN-RYSKQVL 82 (88)
T ss_dssp HHHHHHHHHHH-HHHHHHC
T ss_pred HHHHHHHHHHH-HHHHHcc
Confidence 67999999765 3444443
No 10
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=5.36 E-value=1.6e+02 Score=20.08 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=19.5
Q ss_pred Ccchhhch--HhhhhccccccccCCCCCCcCC
Q 023195 244 PTHTVHYY--WRKFDDAFMRPVFGGRGFAPFV 273 (286)
Q Consensus 244 ~~~~~~~~--w~~fd~~ymrp~f~~~~~~~~~ 273 (286)
||.+.--| |+++. +.--|+||.|.....+
T Consensus 63 PhgSfv~Y~G~~~ie-~~~VP~FGNR~lLrwE 93 (96)
T d2pbza1 63 PHGSFVAYLGIEAIE-KAKARFFGNRRFLKWE 93 (96)
T ss_dssp CBTTHHHHSCHHHHH-TCCSCCBSCSSGGGGG
T ss_pred cCCCEEEEecHHHHh-hCCCCcccChhHhhhh
Confidence 44443333 99998 5688999999765443
Done!