BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023196
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%)
Query: 27 WTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPI 86
W+ +ENK FE ALA+Y + TPDRW VA + G+T +V K Y+ L ED+ IE+G+VP
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70
Query: 87 PGYLSSSFTLE 97
P Y ++ ++
Sbjct: 71 PNYRTTGGNMK 81
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 121 RKKGVPWTEEEHKRFLMGLIKYGKGD---WRNISRNYVISKTPTQVASH 166
R G PW+ +E+K F L Y K W N++R V +TP +V H
Sbjct: 5 RGSGRPWSAKENKAFERALAVYDKDTPDRWANVARA-VEGRTPEEVKKH 52
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 55.5 bits (132), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGR 83
T WT EE K E AL Y +TP+RW K+A +PG+T D +K+YKEL E V +A +
Sbjct: 4 TPWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQ 62
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 27 WTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE 73
W EN FE AL+ ++ TPDRW KVA + G+T +V K Y ELE
Sbjct: 23 WKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY-ELE 68
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRRP 184
V WT EE + F GL K+G+ W IS+ + S+T QV S+A++YF ++ G DK P
Sbjct: 10 VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETP 67
Query: 185 S 185
+
Sbjct: 68 N 68
Score = 31.2 bits (69), Expect = 0.64, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 27 WTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDV 65
WT EE + FE LA + RW K++ +I +TVL V
Sbjct: 12 WTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQV 46
>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 37.7 bits (86), Expect = 0.008, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 19 QESSRSTS--WTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL 72
+E +RS WT+ + K E AL Y + D W K+A +P K+ D I +YK L
Sbjct: 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 66
>pdb|2CQQ|A Chain A, Solution Structure Of Rsgi Ruh-037, A Myb Dna-Binding
Domain In Human Cdna
Length = 72
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 21 SSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVS 77
SS + WT+E+ + ++ + TP RW K+A + G++V DV + K+L++ V+
Sbjct: 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVT 60
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 127 WTEEEHKRFLMGLIKYGKGD-----WRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDK 181
WT EE K+ LIKY + W+ I+ + + ++T QVAS QKYFI+ G
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLTKAGIPV 69
Query: 182 RRPS 185
PS
Sbjct: 70 SGPS 73
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 127 WTEEEHKRFLMGLIKYGKGDWRNI 150
WT+EE ++ L+G+ KYG G W I
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 127 WTEEEHKRFLMGLIKYGKGDWRNI 150
WT+EE ++ L+G+ KYG G W I
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 127 WTEEEHKRFLMGLIKYGKGDWRNISRNY-VISKTPTQV 163
WT EE + G+ KYG+G+W IS+NY +++T +
Sbjct: 17 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 54
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 127 WTEEEHKRFLMGLIKYGKGDWRNISRNY-VISKTPTQV 163
WT EE + G+ KYG+G+W IS+NY +++T +
Sbjct: 13 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 50
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 127 WTEEEHKRFLMGLIKYGKGDWRNISRNY-VISKTPTQV 163
WT EE + G+ KYG+G+W IS+NY +++T +
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 51
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 127 WTEEEHKRFLMGLIKYGKGDWRNISRNY-VISKTPTQV 163
WT EE + G+ KYG+G+W IS+NY +++T +
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 51
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 127 WTEEEHKRFLMGLIKYGKGDWRNISRNY-VISKTPTQV 163
WT EE + G+ KYG+G+W IS+NY +++T +
Sbjct: 5 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 42
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 32.0 bits (71), Expect = 0.39, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 127 WTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSG 177
WT +E L ++ G G+W++++ N + +KT + H KYF SG
Sbjct: 11 WTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSGPSSG 60
>pdb|3THF|A Chain A, Crystal Structure Of The Sd2 Domain From Drosophila Shroom
pdb|3THF|B Chain B, Crystal Structure Of The Sd2 Domain From Drosophila Shroom
Length = 190
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 69 YKELEEDV---SDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTLVAKSSD 118
Y+++EE SDIE V I G L+ + + ++ ++ DY N K L+A + D
Sbjct: 114 YEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMCADYDYFINMKAKLIADARD 166
>pdb|2YQK|A Chain A, Solution Structure Of The Sant Domain In Arginine-Glutamic
Acid Dipeptide (Re) Repeats
Length = 63
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 127 WTEEEHKRFLMGLIKYGKGDWR 148
WTE+E KRF+ GL +YGK +R
Sbjct: 12 WTEDEVKRFVKGLRQYGKNFFR 33
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSG 177
V WT EE ++ + ++G+ DW+ ++ S P + Q ++R LSG
Sbjct: 9 VKWTHEEDEQLRALVRQFGQQDWK-----FLASHFPNRTDQQCQYRWLRVLSG 56
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
Length = 105
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 18 LQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKT 61
L + TSWT+EE++ A + +RW ++A ++PG+T
Sbjct: 50 LNPEVKKTSWTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRT 89
>pdb|1HN0|A Chain A, Crystal Structure Of Chondroitin Abc Lyase I From Proteus
Vulgaris At 1.9 Angstroms Resolution
Length = 1021
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 149 NISRNYVISKTPTQVASHAQKYFI 172
NISR YV+ K PTQ A Q Y +
Sbjct: 345 NISRAYVLEKDPTQKAQLKQMYLL 368
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 18 LQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKT 61
L + TSWT+EE++ A + +RW ++A ++PG+T
Sbjct: 104 LNPEVKKTSWTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRT 143
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20
Structures
Length = 54
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKT 61
+ TSWT+EE++ A + +RW ++A ++PG+T
Sbjct: 4 KKTSWTEEEDRILYQA----HKRLGNRWAEIAKLLPGRT 38
>pdb|1OFC|X Chain X, Nucleosome Recognition Module Of Iswi Atpase
Length = 304
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 127 WTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASH 166
WT+ + +F+ KYG+ D NI+++ V KTP +V +
Sbjct: 113 WTKRDFNQFIKANEKYGRDDIDNIAKD-VEGKTPEEVIEY 151
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF 171
V +TEEE + +++YG DW IS+ +I++ P Q Y
Sbjct: 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYI 47
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 17 FLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKT 61
L + TSWT+EE++ A + +RW ++A ++PG+T
Sbjct: 72 HLNPEVKKTSWTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRT 112
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 126 PWTEEEHKRFLMGLIKYGKGDWRNISRN 153
PWT+EE +R + + KYG W +I+++
Sbjct: 29 PWTKEEDQRVIEHVQKYGPKRWSDIAKH 56
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 18 LQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKT 61
L + TSWT+EE++ A + +RW ++A ++PG+T
Sbjct: 50 LNPEVKKTSWTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRT 89
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1
Length = 70
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 119 HERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNY 154
H +K W EE K G+ KYG+G+W I +Y
Sbjct: 6 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY 41
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKT 61
+ TSWT+EE++ A + +RW ++A ++PG+T
Sbjct: 2 KKTSWTEEEDRIIYQA----HKRLGNRWAEIAKLLPGRT 36
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human Trf1
Length = 69
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 119 HERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNY 154
H +K W EE K G+ KYG+G+W I +Y
Sbjct: 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY 40
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 18 LQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKT 61
L + +SWT+EE++ A + +RW ++A ++PG+T
Sbjct: 53 LNPEVKKSSWTEEEDRIIFEAHKVLG----NRWAEIAKLLPGRT 92
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 28.5 bits (62), Expect = 4.5, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 126 PWTEEEHKRFLMGLIKYGKGDWRNISRN 153
PWT+EE +R + + KYG W I+++
Sbjct: 5 PWTKEEDQRLIKLVQKYGPKRWSVIAKH 32
>pdb|4EJ7|A Chain A, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, Atp-Bound
pdb|4EJ7|B Chain B, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, Atp-Bound
pdb|4EJ7|C Chain C, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, Atp-Bound
Length = 292
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 46 TPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEA 81
TPD + IPGKT V+++Y + E++ D A
Sbjct: 111 TPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALA 146
>pdb|4FEU|A Chain A, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Anthrapyrazolone Sp600125
pdb|4FEU|B Chain B, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Anthrapyrazolone Sp600125
pdb|4FEU|C Chain C, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Anthrapyrazolone Sp600125
pdb|4FEU|D Chain D, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Anthrapyrazolone Sp600125
pdb|4FEU|E Chain E, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Anthrapyrazolone Sp600125
pdb|4FEU|F Chain F, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Anthrapyrazolone Sp600125
pdb|4FEW|A Chain A, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp2
pdb|4FEW|B Chain B, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp2
pdb|4FEW|C Chain C, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp2
pdb|4FEW|D Chain D, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp2
pdb|4FEW|E Chain E, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp2
pdb|4FEW|F Chain F, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp2
pdb|4GKH|A Chain A, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Na-Pp1
pdb|4GKH|B Chain B, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Na-Pp1
pdb|4GKH|C Chain C, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Na-Pp1
pdb|4GKH|D Chain D, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Na-Pp1
pdb|4GKH|E Chain E, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Na-Pp1
pdb|4GKH|F Chain F, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Na-Pp1
pdb|4GKH|G Chain G, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Na-Pp1
pdb|4GKH|H Chain H, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Na-Pp1
pdb|4GKH|I Chain I, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Na-Pp1
pdb|4GKH|J Chain J, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Na-Pp1
pdb|4GKH|K Chain K, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Na-Pp1
pdb|4GKH|L Chain L, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Na-Pp1
pdb|4GKI|A Chain A, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Nm-Pp1
pdb|4GKI|B Chain B, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Nm-Pp1
pdb|4GKI|C Chain C, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Nm-Pp1
pdb|4GKI|D Chain D, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Nm-Pp1
pdb|4GKI|E Chain E, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Nm-Pp1
pdb|4GKI|F Chain F, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Nm-Pp1
pdb|4GKI|G Chain G, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Nm-Pp1
pdb|4GKI|H Chain H, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Nm-Pp1
pdb|4GKI|I Chain I, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Nm-Pp1
pdb|4GKI|J Chain J, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Nm-Pp1
pdb|4GKI|K Chain K, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Nm-Pp1
pdb|4GKI|L Chain L, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor 1-Nm-Pp1
Length = 272
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 46 TPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEA 81
TPD + IPGKT V+++Y + E++ D A
Sbjct: 91 TPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALA 126
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 28.1 bits (61), Expect = 6.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 126 PWTEEEHKRFLMGLIKYGKGDWRNISRN 153
PWT+EE +R + + KYG W I+++
Sbjct: 5 PWTKEEDQRVIKLVQKYGPKRWSVIAKH 32
>pdb|4FEV|A Chain A, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp1
pdb|4FEV|B Chain B, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp1
pdb|4FEV|C Chain C, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp1
pdb|4FEV|D Chain D, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp1
pdb|4FEV|E Chain E, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp1
pdb|4FEV|F Chain F, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Pyrazolopyrimidine Pp1
pdb|4FEX|A Chain A, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Tyrphostin Ag1478
pdb|4FEX|B Chain B, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Tyrphostin Ag1478
pdb|4FEX|C Chain C, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Tyrphostin Ag1478
pdb|4FEX|D Chain D, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Tyrphostin Ag1478
pdb|4FEX|E Chain E, Crystal Structure Of The Aminoglycoside Phosphotransferase
Aph(3')-Ia, With Substrate Kanamycin And Small Molecule
Inhibitor Tyrphostin Ag1478
Length = 272
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 46 TPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEA 81
TPD + IPGKT V+++Y + E++ D A
Sbjct: 91 TPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALA 126
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 27.7 bits (60), Expect = 7.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 126 PWTEEEHKRFLMGLIKYGKGDWRNISRN 153
PWT+EE +R + + KYG W I+++
Sbjct: 5 PWTKEEDQRVIELVQKYGPKRWSVIAKH 32
>pdb|2NOG|A Chain A, Sant Domain Structure Of Xenopus Remodeling Factor Iswi
pdb|2NOG|B Chain B, Sant Domain Structure Of Xenopus Remodeling Factor Iswi
Length = 173
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 127 WTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR 173
W + + +F+ K+G+ D NI+R V KTP +V ++ ++ R
Sbjct: 93 WNKRDFNQFIKANEKWGRDDIENIARE-VEGKTPEEVIEYSAVFWER 138
>pdb|1WGX|A Chain A, Solution Structure Of Rsgi Ruh-022, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 21 SSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKE 71
SS W ++E ++ A A + P W +VAA + ++ + ++Y E
Sbjct: 5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME 55
>pdb|4B4C|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Chd1
Length = 211
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKT 159
+ W +E+ L+G+ +YG G W I + +S T
Sbjct: 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLT 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,666,566
Number of Sequences: 62578
Number of extensions: 350958
Number of successful extensions: 699
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 65
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)