Query 023196
Match_columns 286
No_of_seqs 230 out of 1288
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 09:09:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03212 Transcription repress 99.9 2.5E-21 5.4E-26 177.2 14.2 103 23-175 24-127 (249)
2 PLN03091 hypothetical protein; 99.8 1.7E-20 3.6E-25 182.9 13.2 103 23-175 13-116 (459)
3 KOG0048 Transcription factor, 99.8 2.6E-19 5.7E-24 163.3 10.4 103 24-176 9-112 (238)
4 KOG0724 Zuotin and related mol 99.5 3.3E-14 7.1E-19 134.7 8.4 184 14-197 17-242 (335)
5 TIGR01557 myb_SHAQKYF myb-like 99.5 2.6E-14 5.7E-19 104.6 5.3 52 123-174 2-57 (57)
6 KOG0049 Transcription factor, 99.5 1.1E-13 2.3E-18 140.2 10.7 105 14-167 348-454 (939)
7 KOG0049 Transcription factor, 99.5 1.5E-13 3.2E-18 139.2 9.0 104 24-173 305-408 (939)
8 PF00249 Myb_DNA-binding: Myb- 99.5 8.1E-14 1.8E-18 97.4 4.6 46 125-171 2-48 (48)
9 PF13921 Myb_DNA-bind_6: Myb-l 99.3 2.4E-11 5.2E-16 88.0 7.8 43 27-73 1-43 (60)
10 PF00249 Myb_DNA-binding: Myb- 99.2 1.4E-11 3E-16 86.1 5.6 46 25-73 2-48 (48)
11 smart00717 SANT SANT SWI3, AD 99.2 3.4E-11 7.5E-16 81.2 4.5 46 125-171 2-47 (49)
12 cd00167 SANT 'SWI3, ADA2, N-Co 99.1 5.7E-11 1.2E-15 79.1 4.7 44 126-170 1-44 (45)
13 PF13921 Myb_DNA-bind_6: Myb-l 99.0 2.5E-10 5.4E-15 82.6 3.2 43 127-171 1-43 (60)
14 smart00717 SANT SANT SWI3, AD 99.0 1.2E-09 2.6E-14 73.6 6.2 46 25-73 2-47 (49)
15 PLN03212 Transcription repress 98.9 1.9E-09 4.2E-14 99.3 5.1 50 123-173 24-74 (249)
16 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 5.4E-09 1.2E-13 69.5 6.0 44 26-72 1-44 (45)
17 KOG0051 RNA polymerase I termi 98.8 2.3E-08 4.9E-13 101.9 9.3 103 23-174 383-510 (607)
18 KOG0050 mRNA splicing protein 98.8 1.3E-08 2.8E-13 101.6 6.8 103 23-176 6-108 (617)
19 PLN03091 hypothetical protein; 98.7 8.3E-09 1.8E-13 101.7 4.6 49 124-173 14-63 (459)
20 KOG0048 Transcription factor, 98.7 1.1E-08 2.4E-13 93.6 3.7 48 125-173 10-58 (238)
21 COG5147 REB1 Myb superfamily p 98.6 7E-08 1.5E-12 97.2 7.0 104 23-176 19-122 (512)
22 KOG0457 Histone acetyltransfer 98.3 5E-07 1.1E-11 88.9 4.5 50 125-175 73-122 (438)
23 COG5259 RSC8 RSC chromatin rem 97.8 1.8E-05 4E-10 78.7 3.8 41 125-167 280-320 (531)
24 PLN03142 Probable chromatin-re 97.6 0.00029 6.3E-09 76.8 10.8 136 25-174 825-987 (1033)
25 KOG0457 Histone acetyltransfer 97.6 7.8E-05 1.7E-09 73.7 5.3 49 23-74 71-119 (438)
26 COG5114 Histone acetyltransfer 97.6 5E-05 1.1E-09 72.8 3.7 49 125-174 64-112 (432)
27 TIGR01557 myb_SHAQKYF myb-like 97.5 0.00034 7.4E-09 51.3 6.3 46 24-72 3-53 (57)
28 KOG1279 Chromatin remodeling f 97.4 0.00013 2.8E-09 74.0 4.5 42 124-167 253-294 (506)
29 COG5259 RSC8 RSC chromatin rem 97.3 0.00021 4.6E-09 71.4 4.5 46 23-72 278-323 (531)
30 KOG4167 Predicted DNA-binding 97.1 0.00071 1.5E-08 70.7 5.8 46 25-74 620-665 (907)
31 KOG1279 Chromatin remodeling f 97.1 0.00073 1.6E-08 68.6 5.6 46 23-72 252-297 (506)
32 KOG0050 mRNA splicing protein 96.8 0.00071 1.5E-08 68.4 2.9 52 122-174 5-56 (617)
33 KOG0051 RNA polymerase I termi 96.8 0.0038 8.2E-08 64.4 7.9 46 124-172 384-429 (607)
34 PF13325 MCRS_N: N-terminal re 96.8 0.016 3.5E-07 52.5 10.7 111 26-168 1-123 (199)
35 PF13837 Myb_DNA-bind_4: Myb/S 96.3 0.0053 1.2E-07 47.0 3.9 54 25-78 2-69 (90)
36 KOG4329 DNA-binding protein [G 96.3 0.03 6.4E-07 55.0 9.7 49 125-177 278-326 (445)
37 COG5114 Histone acetyltransfer 96.2 0.0069 1.5E-07 58.5 4.9 47 25-74 64-110 (432)
38 KOG1194 Predicted DNA-binding 96.1 0.045 9.8E-07 55.0 10.3 50 124-175 369-418 (534)
39 COG5147 REB1 Myb superfamily p 95.7 0.0049 1.1E-07 62.7 1.8 54 122-176 18-71 (512)
40 PF13837 Myb_DNA-bind_4: Myb/S 95.2 0.038 8.2E-07 42.2 4.9 50 126-176 3-69 (90)
41 PF09111 SLIDE: SLIDE; InterP 94.9 0.042 9.1E-07 45.9 4.7 52 123-174 48-113 (118)
42 PF09111 SLIDE: SLIDE; InterP 94.2 0.11 2.4E-06 43.4 5.5 54 23-76 48-113 (118)
43 PF13873 Myb_DNA-bind_5: Myb/S 93.7 0.12 2.5E-06 39.0 4.4 54 24-77 2-73 (78)
44 COG5118 BDP1 Transcription ini 93.7 0.1 2.2E-06 51.7 5.0 45 23-71 364-408 (507)
45 KOG4167 Predicted DNA-binding 93.7 0.23 4.9E-06 52.7 7.8 41 125-167 620-660 (907)
46 PF08914 Myb_DNA-bind_2: Rap1 93.2 0.13 2.8E-06 38.7 3.8 50 125-174 3-60 (65)
47 COG5118 BDP1 Transcription ini 92.2 0.2 4.2E-06 49.7 4.7 46 120-167 361-406 (507)
48 KOG1878 Nuclear receptor coreg 91.5 0.13 2.8E-06 57.8 2.7 146 23-176 224-404 (1672)
49 KOG3554 Histone deacetylase co 91.4 0.16 3.5E-06 51.5 3.1 47 124-173 285-331 (693)
50 PLN03162 golden-2 like transcr 90.8 0.57 1.2E-05 46.4 6.2 56 120-175 233-291 (526)
51 KOG3841 TEF-1 and related tran 90.2 0.4 8.6E-06 47.5 4.5 55 121-176 73-147 (455)
52 PF12776 Myb_DNA-bind_3: Myb/S 90.1 0.62 1.4E-05 35.9 4.8 52 26-77 1-66 (96)
53 PF13873 Myb_DNA-bind_5: Myb/S 90.0 0.59 1.3E-05 35.1 4.5 50 125-175 3-73 (78)
54 KOG4329 DNA-binding protein [G 89.2 0.57 1.2E-05 46.3 4.8 47 24-74 277-324 (445)
55 PF12776 Myb_DNA-bind_3: Myb/S 89.0 0.85 1.8E-05 35.2 4.8 48 126-174 1-64 (96)
56 KOG4468 Polycomb-group transcr 87.7 1.1 2.4E-05 46.8 5.8 52 23-78 87-148 (782)
57 KOG4468 Polycomb-group transcr 87.6 0.75 1.6E-05 48.0 4.6 50 125-175 89-147 (782)
58 TIGR02894 DNA_bind_RsfA transc 87.0 0.78 1.7E-05 40.4 3.8 49 25-74 5-56 (161)
59 PRK13923 putative spore coat p 86.4 0.78 1.7E-05 40.8 3.5 50 24-74 5-57 (170)
60 TIGR02894 DNA_bind_RsfA transc 83.6 1.1 2.3E-05 39.6 3.0 48 125-174 5-58 (161)
61 PLN03142 Probable chromatin-re 81.1 2 4.3E-05 47.7 4.6 48 126-174 826-873 (1033)
62 KOG2656 DNA methyltransferase 80.3 1.5 3.3E-05 43.7 3.1 48 25-76 131-184 (445)
63 KOG4282 Transcription factor G 80.1 2.4 5.2E-05 40.7 4.4 52 125-176 55-118 (345)
64 PRK13923 putative spore coat p 79.9 1.9 4.1E-05 38.4 3.3 50 125-174 6-59 (170)
65 PF08914 Myb_DNA-bind_2: Rap1 79.2 4.3 9.4E-05 30.4 4.6 50 25-74 3-58 (65)
66 smart00426 TEA TEA domain. 78.1 2.2 4.8E-05 32.6 2.8 21 125-145 4-24 (68)
67 KOG1194 Predicted DNA-binding 77.4 3.6 7.9E-05 41.8 4.8 41 125-167 188-228 (534)
68 KOG3554 Histone deacetylase co 74.5 2.7 5.9E-05 42.9 3.1 44 25-72 286-330 (693)
69 KOG4282 Transcription factor G 74.5 7.4 0.00016 37.3 6.0 54 24-77 54-117 (345)
70 smart00595 MADF subfamily of S 74.0 3.3 7.1E-05 31.5 2.8 26 49-75 29-54 (89)
71 KOG0724 Zuotin and related mol 73.9 0.8 1.7E-05 43.7 -0.8 49 126-176 55-103 (335)
72 PF13404 HTH_AsnC-type: AsnC-t 69.4 13 0.00028 25.3 4.6 40 30-73 3-42 (42)
73 PF01285 TEA: TEA/ATTS domain 67.2 4.7 0.0001 40.6 3.0 46 124-170 49-112 (431)
74 KOG2009 Transcription initiati 64.4 6.1 0.00013 41.3 3.2 45 23-71 408-452 (584)
75 COG1549 Queuine tRNA-ribosyltr 64.3 5.1 0.00011 41.2 2.6 58 2-73 290-347 (519)
76 PF11035 SnAPC_2_like: Small n 63.8 26 0.00056 34.3 7.1 53 23-76 20-73 (344)
77 PF11626 Rap1_C: TRF2-interact 63.5 7.6 0.00017 30.3 2.9 14 23-36 46-59 (87)
78 PF06461 DUF1086: Domain of Un 60.7 26 0.00056 30.5 5.9 49 126-175 40-90 (145)
79 KOG0385 Chromatin remodeling c 59.5 11 0.00024 41.0 4.0 40 25-68 796-835 (971)
80 PF04504 DUF573: Protein of un 53.2 20 0.00044 28.7 3.8 48 126-174 6-65 (98)
81 PRK11179 DNA-binding transcrip 51.8 37 0.0008 28.7 5.4 41 30-74 9-49 (153)
82 PF11035 SnAPC_2_like: Small n 51.5 41 0.00088 33.0 6.1 52 122-174 19-73 (344)
83 PF13404 HTH_AsnC-type: AsnC-t 48.3 29 0.00064 23.5 3.5 38 130-169 3-40 (42)
84 PF04504 DUF573: Protein of un 48.0 42 0.0009 26.9 4.9 51 25-75 5-64 (98)
85 PF10545 MADF_DNA_bdg: Alcohol 47.5 19 0.00042 26.4 2.7 28 49-76 28-56 (85)
86 KOG2009 Transcription initiati 47.5 22 0.00049 37.2 4.0 43 123-167 408-450 (584)
87 PF09420 Nop16: Ribosome bioge 46.5 36 0.00079 29.5 4.6 48 122-171 112-163 (164)
88 PF13325 MCRS_N: N-terminal re 46.3 47 0.001 30.3 5.5 51 23-74 72-127 (199)
89 cd00086 homeodomain Homeodomai 44.8 83 0.0018 21.4 5.5 48 23-71 3-50 (59)
90 PF08281 Sigma70_r4_2: Sigma-7 44.5 51 0.0011 22.5 4.3 41 130-173 13-53 (54)
91 PRK11169 leucine-responsive tr 44.4 45 0.00097 28.6 4.9 42 29-74 13-54 (164)
92 KOG0384 Chromodomain-helicase 41.6 14 0.0003 41.9 1.5 53 123-176 1132-1195(1373)
93 PF07750 GcrA: GcrA cell cycle 40.8 40 0.00086 29.5 4.0 42 26-72 2-43 (162)
94 KOG3841 TEF-1 and related tran 38.6 52 0.0011 33.1 4.8 50 23-72 75-141 (455)
95 KOG0385 Chromatin remodeling c 36.8 47 0.001 36.4 4.4 49 125-175 796-844 (971)
96 PRK11179 DNA-binding transcrip 36.8 53 0.0012 27.7 4.1 39 130-170 9-47 (153)
97 PF05263 DUF722: Protein of un 36.3 77 0.0017 27.0 4.9 36 41-77 93-128 (130)
98 smart00389 HOX Homeodomain. DN 36.2 1.3E+02 0.0028 20.3 5.3 46 24-70 4-49 (56)
99 PF00046 Homeobox: Homeobox do 35.9 83 0.0018 21.6 4.3 46 24-70 4-49 (57)
100 PRK11169 leucine-responsive tr 34.8 50 0.0011 28.3 3.6 40 129-170 13-52 (164)
101 KOG2656 DNA methyltransferase 32.9 68 0.0015 32.4 4.6 49 125-174 131-184 (445)
102 smart00344 HTH_ASNC helix_turn 31.8 1.3E+02 0.0029 23.2 5.4 41 30-74 3-43 (108)
103 smart00426 TEA TEA domain. 31.4 79 0.0017 24.2 3.8 22 24-45 3-24 (68)
104 COG5269 ZUO1 Ribosome-associat 28.7 61 0.0013 31.4 3.4 52 23-74 244-301 (379)
105 PF08074 CHDCT2: CHDCT2 (NUC03 24.7 37 0.00079 30.3 1.1 28 125-152 4-31 (173)
106 smart00501 BRIGHT BRIGHT, ARID 23.6 1.3E+02 0.0027 23.3 3.8 29 145-174 54-87 (93)
107 PF00674 DUP: DUP family; Int 22.9 78 0.0017 25.5 2.6 27 32-58 44-70 (108)
108 PF01388 ARID: ARID/BRIGHT DNA 20.4 1.7E+02 0.0037 22.3 4.0 28 145-173 58-90 (92)
109 PF01466 Skp1: Skp1 family, di 20.2 79 0.0017 23.9 2.0 21 50-70 36-56 (78)
No 1
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.86 E-value=2.5e-21 Score=177.18 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=91.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC-CCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhccc
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMI-PGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSE 101 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v-PGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~ 101 (286)
+.+.||+|||++|.++|++|+.. +|..||..+ ++||.+||++||.+.+. |..
T Consensus 24 KRg~WT~EEDe~L~~lV~kyG~~---nW~~IAk~~g~gRT~KQCReRW~N~L~------------P~I------------ 76 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKEGEG---RWRSLPKRAGLLRCGKSCRLRWMNYLR------------PSV------------ 76 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcc---cHHHHHHhhhcCCCcchHHHHHHHhhc------------hhc------------
Confidence 66789999999999999999854 699999988 59999999999998775 221
Q ss_pred ccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 102 SDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 102 ~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
+.++||+|||++|++++.+||. +|..||+ +|++||..||++||..++++..
T Consensus 77 ---------------------~kgpWT~EED~lLlel~~~~Gn-KWs~IAk-~LpGRTDnqIKNRWns~LrK~l 127 (249)
T PLN03212 77 ---------------------KRGGITSDEEDLILRLHRLLGN-RWSLIAG-RIPGRTDNEIKNYWNTHLRKKL 127 (249)
T ss_pred ---------------------ccCCCChHHHHHHHHHHHhccc-cHHHHHh-hcCCCCHHHHHHHHHHHHhHHH
Confidence 2369999999999999999998 9999997 9999999999999988877653
No 2
>PLN03091 hypothetical protein; Provisional
Probab=99.84 E-value=1.7e-20 Score=182.95 Aligned_cols=103 Identities=15% Similarity=0.288 Sum_probs=91.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC-CCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhccc
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIP-GKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSE 101 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP-GRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~ 101 (286)
+.+.||.|||++|+++|.+|+.. .|..||..++ |||.+||++||.+.++ |.
T Consensus 13 rKg~WTpEEDe~L~~~V~kyG~~---nWs~IAk~~g~gRT~KQCRERW~NyLd------------P~------------- 64 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKYGHG---CWSSVPKQAGLQRCGKSCRLRWINYLR------------PD------------- 64 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcC---CHHHHhhhhccCcCcchHhHHHHhccC------------Cc-------------
Confidence 56789999999999999999965 5999999885 9999999999998765 21
Q ss_pred ccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 102 SDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 102 ~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
. +.++||+|||++|++++++||. +|..||+ +|++||+.||++||...++|..
T Consensus 65 -------------------I-kKgpWT~EED~lLLeL~k~~Gn-KWskIAk-~LPGRTDnqIKNRWnslLKKkl 116 (459)
T PLN03091 65 -------------------L-KRGTFSQQEENLIIELHAVLGN-RWSQIAA-QLPGRTDNEIKNLWNSCLKKKL 116 (459)
T ss_pred -------------------c-cCCCCCHHHHHHHHHHHHHhCc-chHHHHH-hcCCCCHHHHHHHHHHHHHHHH
Confidence 1 2369999999999999999998 9999996 9999999999999988777753
No 3
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.79 E-value=2.6e-19 Score=163.34 Aligned_cols=103 Identities=15% Similarity=0.225 Sum_probs=92.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC-CCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196 24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIP-GKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES 102 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP-GRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~ 102 (286)
.+.||.|||.+|.+.|..|+.+ +|..||..++ ||+.++|+.||.+.+. |+
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~---~W~~i~k~~gl~R~GKSCRlRW~NyLr------------P~-------------- 59 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKH---NGTALPKLAGLRRCGKSCRLRWTNYLR------------PD-------------- 59 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCC---CcchhhhhcCCCccchHHHHHhhcccC------------CC--------------
Confidence 4899999999999999999977 6999999999 9999999999987543 11
Q ss_pred cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196 103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s 176 (286)
.|.+.||+|||++|+++..++|. +|..||+ ++||||+..|++||.-.++|...
T Consensus 60 -------------------ikrg~fT~eEe~~Ii~lH~~~GN-rWs~IA~-~LPGRTDNeIKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 60 -------------------LKRGNFSDEEEDLIIKLHALLGN-RWSLIAG-RLPGRTDNEVKNHWNTHLKKKLL 112 (238)
T ss_pred -------------------ccCCCCCHHHHHHHHHHHHHHCc-HHHHHHh-hCCCcCHHHHHHHHHHHHHHHHH
Confidence 23469999999999999999999 9999997 99999999999999988877754
No 4
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.3e-14 Score=134.74 Aligned_cols=184 Identities=41% Similarity=0.530 Sum_probs=146.9
Q ss_pred CCccccCCCC----CCCCCHHHHHHHHHHHHHhCCC----CCchhHHHhhhCCC-CCHHHHHHHHHHhhhhhhhhccCCC
Q 023196 14 SNWFLQESSR----STSWTKEENKRFESALAIYSES----TPDRWIKVAAMIPG-KTVLDVIKQYKELEEDVSDIEAGRV 84 (286)
Q Consensus 14 ~~~~~~~~~~----~~~WT~EEdk~Le~Ala~~~~~----tpdRW~kIAa~vPG-RT~~QV~~rYk~L~~dv~~IE~G~v 84 (286)
..|.+++... ...|+.++.+.|++|++.+... ++++|.+++++||+ ++..+++++|..+..++..++++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 96 (335)
T KOG0724|consen 17 ALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQK 96 (335)
T ss_pred hhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCC
Confidence 4566655422 3669999999999999999864 78999999999999 9999999999999999999999999
Q ss_pred CCCCCCCCc--------chhhhcc---cccchhh---------h---hhhcc-----cccccccCccCCCCCHHHHHHHH
Q 023196 85 PIPGYLSSS--------FTLELVS---ESDYDAN---------R---KRTLV-----AKSSDHERKKGVPWTEEEHKRFL 136 (286)
Q Consensus 85 ~~P~y~~~~--------f~l~~~~---~~~~dg~---------~---kr~~~-----~r~~~qerkKg~pWT~EEd~lll 136 (286)
++|.|.... |...|.. ...|... . .+... ....+..++++.+|++.++++++
T Consensus 97 ~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (335)
T KOG0724|consen 97 PFPKYGKSDTSLAEVEEFYNFWPKFKSWRQYPQKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRRKGTPVTERERKLVL 176 (335)
T ss_pred CccccCccccccccccccCCccccccccccCCCCCCcccccccchhhhhhcccccccccchhhhhhccchhHHHHHHHHH
Confidence 999996421 1111211 1112110 0 11110 12235667788999999999999
Q ss_pred HHHHHhCCCchhcchhhhcCCCCHHHHHHHHH-----HHHHHHhcCCCCCCCCCccccccccccCC
Q 023196 137 MGLIKYGKGDWRNISRNYVISKTPTQVASHAQ-----KYFIRQLSGGKDKRRPSIHDITTGNLTNS 197 (286)
Q Consensus 137 ~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~q-----ky~~r~~s~~k~krr~sihdit~~~~~~~ 197 (286)
.++.++|++.|..|+++++..|++.|+.+|++ +|+.+.....++++|.++||++.+.....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 242 (335)
T KOG0724|consen 177 LALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSGEEEKRRKSIEDITTASEAED 242 (335)
T ss_pred hhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhccccccchhhhhhccchhhh
Confidence 99999999999999999999999999999999 99999999999999999999998876655
No 5
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.50 E-value=2.6e-14 Score=104.61 Aligned_cols=52 Identities=46% Similarity=0.716 Sum_probs=46.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCch---hcchhhhcCCC-CHHHHHHHHHHHHHHH
Q 023196 123 KGVPWTEEEHKRFLMGLIKYGKGDW---RNISRNYVISK-TPTQVASHAQKYFIRQ 174 (286)
Q Consensus 123 Kg~pWT~EEd~lll~gl~kyG~g~W---~~IA~~~V~tR-T~~Q~~sh~qky~~r~ 174 (286)
++..||+|||.+||+||+.||.|+| +.|+..++.+| |..||+||+||||.++
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k~ 57 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 3468999999999999999999999 99997556677 9999999999999863
No 6
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.49 E-value=1.1e-13 Score=140.20 Aligned_cols=105 Identities=24% Similarity=0.468 Sum_probs=90.1
Q ss_pred CCcc--ccCCCCCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCC
Q 023196 14 SNWF--LQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLS 91 (286)
Q Consensus 14 ~~~~--~~~~~~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~ 91 (286)
.+|. ++.+.+.+.||.+||.+|..||+.|++. .|-+|-+.||||+..||++||.++++-
T Consensus 348 ~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~k---dw~k~R~~vPnRSdsQcR~RY~nvL~~---------------- 408 (939)
T KOG0049|consen 348 TRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAK---DWAKVRQAVPNRSDSQCRERYTNVLNR---------------- 408 (939)
T ss_pred hhheeccCccccCCCCCCHHHHHHHHHHHHhCcc---chhhHHHhcCCccHHHHHHHHHHHHHH----------------
Confidence 3455 2445578999999999999999999976 499999999999999999999998761
Q ss_pred CcchhhhcccccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196 92 SSFTLELVSESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA 167 (286)
Q Consensus 92 ~~f~l~~~~~~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~ 167 (286)
+.|.+.||-.||..|+.+|++||.|.|.+||. ++|.||..|..++-
T Consensus 409 -----------------------------s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~-~Lp~~t~~q~~rrR 454 (939)
T KOG0049|consen 409 -----------------------------SAKVERWTLVEDEQLLYAVKVYGKGNWAKCAM-LLPKKTSRQLRRRR 454 (939)
T ss_pred -----------------------------hhccCceeecchHHHHHHHHHHccchHHHHHH-HccccchhHHHHHH
Confidence 12346899999999999999999999999996 99999997755543
No 7
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.46 E-value=1.5e-13 Score=139.21 Aligned_cols=104 Identities=23% Similarity=0.497 Sum_probs=91.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhccccc
Q 023196 24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESD 103 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~~ 103 (286)
..+||+|||.+|..+|..--.+....|.+|-.+||||+..|.|-||-..++ |+
T Consensus 305 ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~Ld------------Ps--------------- 357 (939)
T KOG0049|consen 305 EKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLD------------PS--------------- 357 (939)
T ss_pred hhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccC------------cc---------------
Confidence 368999999999999999888888899999999999999999999987654 21
Q ss_pred chhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196 104 YDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR 173 (286)
Q Consensus 104 ~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r 173 (286)
.|.++||.+||.+|+.+|.+||..+|.+|-. .||+|+..||+.||.+.+.+
T Consensus 358 ------------------ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~-~vPnRSdsQcR~RY~nvL~~ 408 (939)
T KOG0049|consen 358 ------------------VKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQ-AVPNRSDSQCRERYTNVLNR 408 (939)
T ss_pred ------------------ccCCCCCCHHHHHHHHHHHHhCccchhhHHH-hcCCccHHHHHHHHHHHHHH
Confidence 2457999999999999999999889999985 99999999999987665554
No 8
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.45 E-value=8.1e-14 Score=97.43 Aligned_cols=46 Identities=37% Similarity=0.727 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcC-CCCHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI-SKTPTQVASHAQKYF 171 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~-tRT~~Q~~sh~qky~ 171 (286)
.+||+|||++|+++|.+||.++|..||. .|+ +||..||++||++|.
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAK-RMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHH-HHSSSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHH-HcCCCCCHHHHHHHHHhhC
Confidence 4899999999999999999966999996 899 999999999999873
No 9
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.26 E-value=2.4e-11 Score=87.96 Aligned_cols=43 Identities=23% Similarity=0.472 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhh
Q 023196 27 WTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE 73 (286)
Q Consensus 27 WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~ 73 (286)
||.|||.+|..++..|+. .|..||++||.||..+|+.||...+
T Consensus 1 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN----DWKKIAEHLGNRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-----HHHHHHHSTTS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCc----CHHHHHHHHCcCCHHHHHHHHHHHC
Confidence 999999999999999975 4999999996699999999999833
No 10
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.24 E-value=1.4e-11 Score=86.10 Aligned_cols=46 Identities=30% Similarity=0.666 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC-CCCHHHHHHHHHHhh
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIP-GKTVLDVIKQYKELE 73 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP-GRT~~QV~~rYk~L~ 73 (286)
+.||.||+++|.+||.+|+.+ +|..||..|| |||..||+.||..++
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 579999999999999999976 7999999999 999999999999864
No 11
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.17 E-value=3.4e-11 Score=81.24 Aligned_cols=46 Identities=28% Similarity=0.529 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF 171 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~ 171 (286)
.+||++|+.+|+.++..||.++|..||. .+++||+.+|+++|..++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~-~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAK-ELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence 4899999999999999999559999996 999999999999998764
No 12
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.14 E-value=5.7e-11 Score=79.14 Aligned_cols=44 Identities=36% Similarity=0.733 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHH
Q 023196 126 PWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKY 170 (286)
Q Consensus 126 pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky 170 (286)
+||+||+++|+.++.+||.++|..||+ .+++||..||++||.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~-~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAK-ELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHh-HcCCCCHHHHHHHHHHh
Confidence 599999999999999999559999996 99999999999999765
No 13
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.00 E-value=2.5e-10 Score=82.61 Aligned_cols=43 Identities=33% Similarity=0.629 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196 127 WTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF 171 (286)
Q Consensus 127 WT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~ 171 (286)
||+|||.+|+.++++||. +|..||+ +++.||+.||+.||.+++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAE-HLGNRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHH-HSTTS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHH-HHCcCCHHHHHHHHHHHC
Confidence 999999999999999997 9999996 888899999999997744
No 14
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.99 E-value=1.2e-09 Score=73.65 Aligned_cols=46 Identities=26% Similarity=0.574 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhh
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE 73 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~ 73 (286)
..||++|+++|..+++.|+.. +|..||..||+||..||+.+|..+.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~---~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 579999999999999999942 4999999999999999999999865
No 15
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.88 E-value=1.9e-09 Score=99.33 Aligned_cols=50 Identities=24% Similarity=0.444 Sum_probs=45.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhc-CCCCHHHHHHHHHHHHHH
Q 023196 123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYV-ISKTPTQVASHAQKYFIR 173 (286)
Q Consensus 123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V-~tRT~~Q~~sh~qky~~r 173 (286)
+.++||+|||++|+.+|++||..+|..||+ .+ ++||+.||+.||.+|+..
T Consensus 24 KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~~g~gRT~KQCReRW~N~L~P 74 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPK-RAGLLRCGKSCRLRWMNYLRP 74 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcccHHHHHH-hhhcCCCcchHHHHHHHhhch
Confidence 346999999999999999999889999997 66 699999999999999854
No 16
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.88 E-value=5.4e-09 Score=69.46 Aligned_cols=44 Identities=30% Similarity=0.672 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh
Q 023196 26 SWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL 72 (286)
Q Consensus 26 ~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L 72 (286)
.||.||+++|..++..|+. .+|..||..||+||..||+.+|..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 4999999999999999994 2599999999999999999999875
No 17
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.77 E-value=2.3e-08 Score=101.91 Aligned_cols=103 Identities=17% Similarity=0.401 Sum_probs=85.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES 102 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~ 102 (286)
..+.||+||++.|...+.+++.. |..|+.+| ||.+.+|+++|...+. ++
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~~----W~~Ig~~l-gr~P~~crd~wr~~~~------------~g-------------- 431 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGND----WKEIGKAL-GRMPMDCRDRWRQYVK------------CG-------------- 431 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhccc----HHHHHHHH-ccCcHHHHHHHHHhhc------------cc--------------
Confidence 56899999999999999999865 99999999 8999999999998653 00
Q ss_pred cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHH-------Hh-------C-----C-----C-chhcchhhhcCC
Q 023196 103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLI-------KY-------G-----K-----G-DWRNISRNYVIS 157 (286)
Q Consensus 103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~-------ky-------G-----~-----g-~W~~IA~~~V~t 157 (286)
...+..+||.||.++||..|. .| | . + .|..|+. .++|
T Consensus 432 -----------------~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse-~~~T 493 (607)
T KOG0051|consen 432 -----------------SKRNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSE-MLGT 493 (607)
T ss_pred -----------------cccccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhH-hhcC
Confidence 002336999999999999995 33 1 1 1 7999996 9999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 023196 158 KTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 158 RT~~Q~~sh~qky~~r~ 174 (286)
|+..||+.+|.+...+-
T Consensus 494 R~~~qCr~Kw~kl~~~~ 510 (607)
T KOG0051|consen 494 RSRIQCRYKWYKLTTSP 510 (607)
T ss_pred CCcchHHHHHHHHHhhH
Confidence 99999999999887765
No 18
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=1.3e-08 Score=101.60 Aligned_cols=103 Identities=20% Similarity=0.426 Sum_probs=89.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES 102 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~ 102 (286)
+++.|+.-||+.|..||.+|+++ .|.+||..++-||..||..+|.+.++..
T Consensus 6 kggvwrntEdeilkaav~kyg~n---qws~i~sll~~kt~rqC~~rw~e~ldp~-------------------------- 56 (617)
T KOG0050|consen 6 KGGVWRNTEDEVLKAAVMKYGKN---QWSRIASLLNRKTARQCKARWEEWLDPA-------------------------- 56 (617)
T ss_pred ecceecccHHHHHHHHHHHcchH---HHHHHHHHHhhcchhHHHHHHHHHhCHH--------------------------
Confidence 56889999999999999999987 5999999999999999999999876521
Q ss_pred cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196 103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s 176 (286)
.+..-|+.|||..||.+.+.+.. .|+.|+- +-+||..||-.||.+..--..+
T Consensus 57 -------------------i~~tews~eederlLhlakl~p~-qwrtIa~--i~gr~~~qc~eRy~~ll~~~~s 108 (617)
T KOG0050|consen 57 -------------------IKKTEWSREEDERLLHLAKLEPT-QWRTIAD--IMGRTSQQCLERYNNLLDVYVS 108 (617)
T ss_pred -------------------HhhhhhhhhHHHHHHHHHHhcCC-ccchHHH--HhhhhHHHHHHHHHHHHHHHHh
Confidence 12357999999999999999998 9999995 8899999999998776655543
No 19
>PLN03091 hypothetical protein; Provisional
Probab=98.74 E-value=8.3e-09 Score=101.69 Aligned_cols=49 Identities=20% Similarity=0.476 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhcchhhhc-CCCCHHHHHHHHHHHHHH
Q 023196 124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYV-ISKTPTQVASHAQKYFIR 173 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V-~tRT~~Q~~sh~qky~~r 173 (286)
.++||+|||++|+++|++||.++|..||+ .+ ++||+.||+.||.+|+..
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk-~~g~gRT~KQCRERW~NyLdP 63 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWINYLRP 63 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhh-hhccCcCcchHhHHHHhccCC
Confidence 36899999999999999999999999997 66 599999999999987653
No 20
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.69 E-value=1.1e-08 Score=93.59 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcC-CCCHHHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI-SKTPTQVASHAQKYFIR 173 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~-tRT~~Q~~sh~qky~~r 173 (286)
+|||.|||.+|+..|++||.|+|..|++ ..+ +|+..+||-||.+|++-
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k-~~gl~R~GKSCRlRW~NyLrP 58 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPK-LAGLRRCGKSCRLRWTNYLRP 58 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhh-hcCCCccchHHHHHhhcccCC
Confidence 6999999999999999999999999997 898 99999999999999864
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.61 E-value=7e-08 Score=97.21 Aligned_cols=104 Identities=20% Similarity=0.366 Sum_probs=89.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES 102 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~ 102 (286)
+.+.|+..||..|..++..|+.. .|.+||+.|.-++..||..||..-++ |.
T Consensus 19 k~gsw~~~EDe~l~~~vk~l~~n---nws~vas~~~~~~~kq~~~rw~~~ln------------p~-------------- 69 (512)
T COG5147 19 KGGSWKRTEDEDLKALVKKLGPN---NWSKVASLLISSTGKQSSNRWNNHLN------------PQ-------------- 69 (512)
T ss_pred cCCCCCCcchhHHHHHHhhcccc---cHHHHHHHhcccccccccchhhhhhc------------hh--------------
Confidence 66789999999999999988855 59999999988999999999965332 11
Q ss_pred cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196 103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s 176 (286)
.+...|++||++.++.+-..+|. .|..||. ++++||..||..+|.+.+....+
T Consensus 70 -------------------lk~~~~~~eed~~li~l~~~~~~-~wstia~-~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 70 -------------------LKKKNWSEEEDEQLIDLDKELGT-QWSTIAD-YKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred -------------------cccccccHHHHHHHHHHHHhcCc-hhhhhcc-ccCccchHHHHHHHHHHhhhhhc
Confidence 12358999999999999999999 8999996 99999999999999888887764
No 22
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=98.32 E-value=5e-07 Score=88.89 Aligned_cols=50 Identities=28% Similarity=0.513 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
..||.+|+-+||+|+..||-|+|..||. +|++||..+|+.||.|+|...-
T Consensus 73 ~~WtadEEilLLea~~t~G~GNW~dIA~-hIGtKtkeeck~hy~k~fv~s~ 122 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYGFGNWQDIAD-HIGTKTKEECKEHYLKHFVNSP 122 (438)
T ss_pred CCCChHHHHHHHHHHHHhCCCcHHHHHH-HHcccchHHHHHHHHHHHhcCc
Confidence 4799999999999999999999999995 9999999999999999998763
No 23
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.78 E-value=1.8e-05 Score=78.74 Aligned_cols=41 Identities=34% Similarity=0.584 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA 167 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~ 167 (286)
.+||.+|--+||+||+.||. +|.+||+ +|++||+.||.-|+
T Consensus 280 k~WS~qE~~LLLEGIe~ygD-dW~kVA~-HVgtKt~EqCIl~F 320 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGD-DWDKVAR-HVGTKTKEQCILHF 320 (531)
T ss_pred ccccHHHHHHHHHHHHHhhh-hHHHHHH-HhCCCCHHHHHHHH
Confidence 48999999999999999999 9999997 99999999999985
No 24
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.64 E-value=0.00029 Score=76.82 Aligned_cols=136 Identities=24% Similarity=0.320 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhh----------hhhhccCCCCCCCCCCCcc
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEED----------VSDIEAGRVPIPGYLSSSF 94 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~d----------v~~IE~G~v~~P~y~~~~f 94 (286)
..||.-|=..|.+|.++|+.+ ....||..|.|||..+|++.++.+-.- +..||.|...+-....
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~---~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~--- 898 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRN---DIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDE--- 898 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHh---HHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHH---
Confidence 569999999999999999965 589999999999999998655443321 2234544311100000
Q ss_pred hhhhcccccchhhhhhhcccccc------cccCccCCCCCHHHHHHHHHHHHHhCCCchhcchh-----------hhcCC
Q 023196 95 TLELVSESDYDANRKRTLVAKSS------DHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISR-----------NYVIS 157 (286)
Q Consensus 95 ~l~~~~~~~~dg~~kr~~~~r~~------~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~-----------~~V~t 157 (286)
-...+..+....+.+ .-...++..+|+|||+.||-.+.+||-|+|..|-. -|+.+
T Consensus 899 --------~~~~~~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~s 970 (1033)
T PLN03142 899 --------IMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKS 970 (1033)
T ss_pred --------HHHHHHHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhcc
Confidence 000000000000000 00112345799999999999999999999999943 35689
Q ss_pred CCHHHHHHHHHHHHHHH
Q 023196 158 KTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 158 RT~~Q~~sh~qky~~r~ 174 (286)
||+..+..|+...+.-+
T Consensus 971 rt~~~~~~r~~~l~~~~ 987 (1033)
T PLN03142 971 RTPQELARRCDTLIRLI 987 (1033)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999997655544
No 25
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.61 E-value=7.8e-05 Score=73.70 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
-...||.+|+-+|.+|+..|+-| +|+.||.+|+.||..||++||.+...
T Consensus 71 ~~~~WtadEEilLLea~~t~G~G---NW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETYGFG---NWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCChHHHHHHHHHHHHhCCC---cHHHHHHHHcccchHHHHHHHHHHHh
Confidence 34569999999999999999998 59999999999999999999976543
No 26
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.60 E-value=5e-05 Score=72.82 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~ 174 (286)
..|+.+|+-+|++++...|-|+|..||. +|+.|+...|++||-||+..-
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIad-yiGsr~kee~k~HylK~y~es 112 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIAD-YIGSRAKEEIKSHYLKMYDES 112 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHH-HHhhhhhHHHHHHHHHHHhhc
Confidence 4699999999999999999999999996 999999999999999998853
No 27
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.51 E-value=0.00034 Score=51.26 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCchh---HHHhhhCC-CC-CHHHHHHHHHHh
Q 023196 24 STSWTKEENKRFESALAIYSESTPDRW---IKVAAMIP-GK-TVLDVIKQYKEL 72 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW---~kIAa~vP-GR-T~~QV~~rYk~L 72 (286)
+-.||+||..+|..||..++.+ .| ..|++.+. .+ |..||+.|+.+.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g---~~a~pk~I~~~~~~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGP---DWATPKRILELMVVDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---cccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4679999999999999999975 39 99999875 35 999999999864
No 28
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=97.44 E-value=0.00013 Score=74.01 Aligned_cols=42 Identities=29% Similarity=0.477 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196 124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA 167 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~ 167 (286)
+..||++|.-+||+||++||. +|.+||. +|++||..||..|+
T Consensus 253 ~~~WT~qE~lLLLE~ie~y~d-dW~kVa~-hVg~ks~eqCI~kF 294 (506)
T KOG1279|consen 253 RPNWTEQETLLLLEAIEMYGD-DWNKVAD-HVGTKSQEQCILKF 294 (506)
T ss_pred CCCccHHHHHHHHHHHHHhcc-cHHHHHh-ccCCCCHHHHHHHH
Confidence 358999999999999999999 9999996 99999999999974
No 29
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.34 E-value=0.00021 Score=71.35 Aligned_cols=46 Identities=26% Similarity=0.515 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL 72 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L 72 (286)
....||.+|.-+|.++|.+|+.+ |.+||.+|+.||++||+-||-.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDd----W~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDD----WDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhh----HHHHHHHhCCCCHHHHHHHHHcC
Confidence 34579999999999999999965 99999999999999999999765
No 30
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=97.12 E-value=0.00071 Score=70.74 Aligned_cols=46 Identities=35% Similarity=0.541 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
..||..|.++|.+||..|.++ +.+|+.+|+||||.||.+.|.....
T Consensus 620 d~WTp~E~~lF~kA~y~~~KD----F~~v~km~~~KtVaqCVeyYYtWKK 665 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSKD----FIFVQKMVKSKTVAQCVEYYYTWKK 665 (907)
T ss_pred ccccHHHHHHHHHHHHHhccc----HHHHHHHhccccHHHHHHHHHHHHH
Confidence 789999999999999999987 9999999999999999999965444
No 31
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=97.10 E-value=0.00073 Score=68.59 Aligned_cols=46 Identities=26% Similarity=0.504 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL 72 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L 72 (286)
....||.+|.-+|..+|.+|+.+ |.+||.+|.+||..||+-|+..|
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~dd----W~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDD----WNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhccc----HHHHHhccCCCCHHHHHHHHHhc
Confidence 66889999999999999999976 99999999999999999999765
No 32
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=0.00071 Score=68.44 Aligned_cols=52 Identities=25% Similarity=0.482 Sum_probs=47.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196 122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 122 kKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~ 174 (286)
.||+.|+--||+.|-.++.+||.-.|+.|++ .+.-+|+.||+.+|.+|....
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~s-ll~~kt~rqC~~rw~e~ldp~ 56 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIAS-LLNRKTARQCKARWEEWLDPA 56 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHH-HHhhcchhHHHHHHHHHhCHH
Confidence 4678999999999999999999999999996 999999999999998887643
No 33
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.81 E-value=0.0038 Score=64.44 Aligned_cols=46 Identities=22% Similarity=0.541 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHH
Q 023196 124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI 172 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~ 172 (286)
.+.||+||++.|...+.++|. +|..|++ .-+|.|..|+.+|+.|..
T Consensus 384 rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~--~lgr~P~~crd~wr~~~~ 429 (607)
T KOG0051|consen 384 RGKWTPEEEEELKKLVVEHGN-DWKEIGK--ALGRMPMDCRDRWRQYVK 429 (607)
T ss_pred cCCCCcchHHHHHHHHHHhcc-cHHHHHH--HHccCcHHHHHHHHHhhc
Confidence 468999999999999999997 9999996 789999999999987754
No 34
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.75 E-value=0.016 Score=52.47 Aligned_cols=111 Identities=13% Similarity=0.121 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC---CCCHHHHHHHHHHhhhhhh--hhccCCCCCCCCCCCcchhhhcc
Q 023196 26 SWTKEENKRFESALAIYSESTPDRWIKVAAMIP---GKTVLDVIKQYKELEEDVS--DIEAGRVPIPGYLSSSFTLELVS 100 (286)
Q Consensus 26 ~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP---GRT~~QV~~rYk~L~~dv~--~IE~G~v~~P~y~~~~f~l~~~~ 100 (286)
+|++++|-+|++||..-. .-+.|+.-|+ .-|..++.+||..|+-|-. .+...
T Consensus 1 rW~~~DDl~Li~av~~~~-----~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~------------------ 57 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN-----DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVA------------------ 57 (199)
T ss_pred CCCchhhHHHHHHHHHhc-----CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHH------------------
Confidence 599999999999997633 2667776665 4699999999999997621 11000
Q ss_pred cccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCC--Cchhcc-----hhhhcCCCCHHHHHHHHH
Q 023196 101 ESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGK--GDWRNI-----SRNYVISKTPTQVASHAQ 168 (286)
Q Consensus 101 ~~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~--g~W~~I-----A~~~V~tRT~~Q~~sh~q 168 (286)
+...+.... .. ......+||.+|+++|......... ..+.+| + .|-++||+.+...||+
T Consensus 58 --~m~~l~p~~---~~---~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~-vFh~sRTak~L~~HW~ 123 (199)
T PF13325_consen 58 --AMRNLHPEL---IA---AIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRS-VFHPSRTAKSLQDHWR 123 (199)
T ss_pred --HHHhCCcch---hh---cccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChh-hhccccCHHHHHHHHH
Confidence 000000000 00 0112369999999999987655433 245555 3 3789999999999998
No 35
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.27 E-value=0.0053 Score=46.99 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHH------hC--CCCC--chhHHHhhhCC----CCCHHHHHHHHHHhhhhhhh
Q 023196 25 TSWTKEENKRFESALAI------YS--ESTP--DRWIKVAAMIP----GKTVLDVIKQYKELEEDVSD 78 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~------~~--~~tp--dRW~kIAa~vP----GRT~~QV~~rYk~L~~dv~~ 78 (286)
..||.+|...|..++.. +. .... .-|..||..|- .||+.||+.+|+.|......
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~ 69 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK 69 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999998876 21 1222 36999999985 59999999999999987654
No 36
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=96.26 E-value=0.03 Score=55.04 Aligned_cols=49 Identities=33% Similarity=0.561 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhcC
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSG 177 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s~ 177 (286)
..||++|=+.|.+||+.||+ ++..|-++-|++|+...|-.+ |+...++.
T Consensus 278 ~~wsEeEcr~FEegl~~yGK-DF~lIr~nkvrtRsvgElVey---YYlWKkSe 326 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGK-DFHLIRANKVRTRSVGELVEY---YYLWKKSE 326 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcc-cHHHHHhcccccchHHHHHHH---HHHhhcCc
Confidence 57999999999999999999 999999999999999999886 45555543
No 37
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.17 E-value=0.0069 Score=58.48 Aligned_cols=47 Identities=15% Similarity=0.360 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
..|+.+|+-+|.+++...+.+ +|+-||.+|+.|+..+|+.||-+...
T Consensus 64 e~WgadEEllli~~~~TlGlG---NW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLG---NWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCC---cHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 359999999999999999988 59999999999999999999987764
No 38
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=96.10 E-value=0.045 Score=54.99 Aligned_cols=50 Identities=6% Similarity=-0.091 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
...||.+|.-+++.+|++||+ ....|+ -.++..+-.|+++....|-+|+.
T Consensus 369 n~~~~T~~~la~v~~I~~~~~-~~~pl~-wrik~t~cmee~e~l~~~~Rr~m 418 (534)
T KOG1194|consen 369 NRCFDTPAALALIDNIKRKHH-MCVPLV-WRVKQTKCMEENEILNEEARRQM 418 (534)
T ss_pred ccccCcHHHHHHHHHHHHhcc-Ccchhh-hHhcCcchhhHHHHHHHHHHHHH
Confidence 368999999999999999999 777788 37888999999999989988873
No 39
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=95.71 E-value=0.0049 Score=62.73 Aligned_cols=54 Identities=24% Similarity=0.423 Sum_probs=48.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196 122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 122 kKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s 176 (286)
++++.|+..||.-++.++++||.-+|.+||. .+..||+.||++||..|...+..
T Consensus 18 ~k~gsw~~~EDe~l~~~vk~l~~nnws~vas-~~~~~~~kq~~~rw~~~lnp~lk 71 (512)
T COG5147 18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVAS-LLISSTGKQSSNRWNNHLNPQLK 71 (512)
T ss_pred ecCCCCCCcchhHHHHHHhhcccccHHHHHH-Hhcccccccccchhhhhhchhcc
Confidence 3557999999999999999999989999996 77779999999999888887754
No 40
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.21 E-value=0.038 Score=42.21 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHH------hCC-----C--chhcchhhhc----CCCCHHHHHHHHHHHHHHHhc
Q 023196 126 PWTEEEHKRFLMGLIK------YGK-----G--DWRNISRNYV----ISKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 126 pWT~EEd~lll~gl~k------yG~-----g--~W~~IA~~~V----~tRT~~Q~~sh~qky~~r~~s 176 (286)
.||.+|..+||.++.. ++. + -|..||. .+ ..||+.||+.+|.+..++...
T Consensus 3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~-~l~~~G~~rt~~qc~~Kw~~L~~~Yk~ 69 (90)
T PF13837_consen 3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAE-ELAEHGYNRTPEQCRNKWKNLKKKYKK 69 (90)
T ss_dssp SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHH-HHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999887 321 1 6999996 55 379999999999877777654
No 41
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=94.94 E-value=0.042 Score=45.90 Aligned_cols=52 Identities=29% Similarity=0.510 Sum_probs=41.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCC---Cchhcchh-----------hhcCCCCHHHHHHHHHHHHHHH
Q 023196 123 KGVPWTEEEHKRFLMGLIKYGK---GDWRNISR-----------NYVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 123 Kg~pWT~EEd~lll~gl~kyG~---g~W~~IA~-----------~~V~tRT~~Q~~sh~qky~~r~ 174 (286)
++..+|+|||+-||..+.+||- |.|..|-. -|+.+||+..+..|+.-.+.-+
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 3468999999999999999998 99999964 3569999999999997555443
No 42
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=94.22 E-value=0.11 Score=43.41 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC------------CCCHHHHHHHHHHhhhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIP------------GKTVLDVIKQYKELEEDV 76 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP------------GRT~~QV~~rYk~L~~dv 76 (286)
.+..+|.|||.-|...+..||-++++.|++|-+.|- .||+.++.+|...|+.-+
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 567899999999999999999988999999988763 799999999999887644
No 43
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=93.73 E-value=0.12 Score=38.96 Aligned_cols=54 Identities=13% Similarity=0.308 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---C----------CCchhHHHhhhCC-----CCCHHHHHHHHHHhhhhhh
Q 023196 24 STSWTKEENKRFESALAIYSE---S----------TPDRWIKVAAMIP-----GKTVLDVIKQYKELEEDVS 77 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~---~----------tpdRW~kIAa~vP-----GRT~~QV~~rYk~L~~dv~ 77 (286)
...||.+|.+.|...|..|.. + -..-|..||..|. .||..||++.|.++...+.
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K 73 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK 73 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 467999999999999998731 1 1246999999883 4999999999999887553
No 44
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=93.70 E-value=0.1 Score=51.67 Aligned_cols=45 Identities=18% Similarity=0.495 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHH
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKE 71 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~ 71 (286)
..-+||.+|...|-+||.+++.+ +..|+.++|.|..+||.-.|++
T Consensus 364 ~~~~Ws~~e~ekFYKALs~wGtd----F~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 364 GALRWSKKEIEKFYKALSIWGTD----FSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred CCCcccHHHHHHHHHHHHHhcch----HHHHHHhcCchhHHHHHHHHHH
Confidence 34679999999999999999977 9999999999999999999975
No 45
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=93.68 E-value=0.23 Score=52.70 Aligned_cols=41 Identities=34% Similarity=0.393 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA 167 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~ 167 (286)
.-||..|-++|-.||-.|-+ ++..|++ .|++||..||-.+|
T Consensus 620 d~WTp~E~~lF~kA~y~~~K-DF~~v~k-m~~~KtVaqCVeyY 660 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSK-DFIFVQK-MVKSKTVAQCVEYY 660 (907)
T ss_pred ccccHHHHHHHHHHHHHhcc-cHHHHHH-HhccccHHHHHHHH
Confidence 57999999999999999999 9999997 99999999999985
No 46
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=93.18 E-value=0.13 Score=38.66 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHhC--------CCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYG--------KGDWRNISRNYVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG--------~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~ 174 (286)
.++|+|||+.|+.-|+.+. +.-|+.+++..+..+|-...++||.|.++..
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 5899999999999997653 2279999975555888888999986665543
No 47
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=92.25 E-value=0.2 Score=49.69 Aligned_cols=46 Identities=22% Similarity=0.464 Sum_probs=41.3
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196 120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA 167 (286)
Q Consensus 120 erkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~ 167 (286)
.+++..+||.+|-.+|-.||..+|. ++..||. ++|+|...||+-.|
T Consensus 361 ~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~-lfP~R~RkqIKaKf 406 (507)
T COG5118 361 KKKGALRWSKKEIEKFYKALSIWGT-DFSLISS-LFPNRERKQIKAKF 406 (507)
T ss_pred CCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHH-hcCchhHHHHHHHH
Confidence 3455679999999999999999999 9999995 99999999999854
No 48
>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]
Probab=91.48 E-value=0.13 Score=57.83 Aligned_cols=146 Identities=25% Similarity=0.337 Sum_probs=81.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHH---------HHhhhhhh-hhcc---CCCCC---
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQY---------KELEEDVS-DIEA---GRVPI--- 86 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rY---------k~L~~dv~-~IE~---G~v~~--- 86 (286)
....|+.+|-+.|+.-++.|.+. ...||.+|..||+.||.--| +.++.-.. .... +..+.
T Consensus 224 ~~n~Ws~~Ek~~fk~rf~~H~kn----f~~~as~~erkSv~d~vlfyy~nkkte~yk~~~~r~~~r~~s~~~~~~~~~~~ 299 (1672)
T KOG1878|consen 224 RMNEWSPEEKELFKSRFAQHVKN----FGLIASFFERKSVSDCVLFYYLNKKTENYKKLVRRPKKRSQSYKVGAFPSPEE 299 (1672)
T ss_pred HhhhccccccccccchhhhcCcc----hhhhhhhhcccchhhceeeeeecccchhHHhhhccccccchhccccccCChHh
Confidence 34689999999999988888764 88999999999999997544 33332000 0000 00111
Q ss_pred --------CCCCCC--cchhhhcccccchhhh---hhhcccccccccCccCCCCCHH------HHHHHHHHHHHhCCCch
Q 023196 87 --------PGYLSS--SFTLELVSESDYDANR---KRTLVAKSSDHERKKGVPWTEE------EHKRFLMGLIKYGKGDW 147 (286)
Q Consensus 87 --------P~y~~~--~f~l~~~~~~~~dg~~---kr~~~~r~~~qerkKg~pWT~E------Ed~lll~gl~kyG~g~W 147 (286)
|...++ +|... ....++++. +..........+.-......-| |-+.--.|+..+|+ +|
T Consensus 300 Ele~~ee~~~ledpkes~~~~--~~~d~~~~~~~~resv~~e~~~~Ple~~ei~a~e~de~see~ev~k~Glveh~R-~~ 376 (1672)
T KOG1878|consen 300 ELEKEEEKPELEDPKESFPKN--KLIDYFGERTVERESVNGEEPFMPLEPYEIFAIEPDELSEEMEVAKSGLVEHGR-EW 376 (1672)
T ss_pred hhhhhhhcccccCcccccccc--ccccccccccccccccccCCCCCCCCCccccccCccccchhhhhhhccchhhhh-hH
Confidence 000000 11110 000111111 1111100000000001222223 33356667778888 99
Q ss_pred hcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196 148 RNISRNYVISKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 148 ~~IA~~~V~tRT~~Q~~sh~qky~~r~~s 176 (286)
.+|+. .|.++|..||++.+-||-.|++.
T Consensus 377 aai~p-~vvt~tes~c~na~a~~~~r~N~ 404 (1672)
T KOG1878|consen 377 AAILP-KVVTKTESQCKNAYAKYKNRHNL 404 (1672)
T ss_pred HHhcC-ccceecccchhhHHHhhhhhhcc
Confidence 99997 99999999999998899998854
No 49
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=91.41 E-value=0.16 Score=51.49 Aligned_cols=47 Identities=28% Similarity=0.497 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196 124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR 173 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r 173 (286)
...|+.-|-.+|.++|+|||+ ++..|-++|+|-++-..|-.+| ||-+
T Consensus 285 mEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIveyY--YmwK 331 (693)
T KOG3554|consen 285 MEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEYY--YMWK 331 (693)
T ss_pred hhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHHH--HHHh
Confidence 457999999999999999999 9999999999999999998876 4443
No 50
>PLN03162 golden-2 like transcription factor; Provisional
Probab=90.79 E-value=0.57 Score=46.42 Aligned_cols=56 Identities=32% Similarity=0.363 Sum_probs=42.5
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhCCC--chhcchh-hhcCCCCHHHHHHHHHHHHHHHh
Q 023196 120 ERKKGVPWTEEEHKRFLMGLIKYGKG--DWRNISR-NYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 120 erkKg~pWT~EEd~lll~gl~kyG~g--~W~~IA~-~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
.+|....||.|=|++|+++|.+.|.. .=+.|-+ =-|++=|..+|+||-|||...++
T Consensus 233 ~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 233 KKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred CCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence 34455789999999999999999931 2333432 02578899999999999988764
No 51
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=90.16 E-value=0.4 Score=47.48 Aligned_cols=55 Identities=31% Similarity=0.437 Sum_probs=43.6
Q ss_pred CccCCCCCHHHHHHHHHHHHHhCC---------------Cchhcchhhhc-----CCCCHHHHHHHHHHHHHHHhc
Q 023196 121 RKKGVPWTEEEHKRFLMGLIKYGK---------------GDWRNISRNYV-----ISKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 121 rkKg~pWT~EEd~lll~gl~kyG~---------------g~W~~IA~~~V-----~tRT~~Q~~sh~qky~~r~~s 176 (286)
+..-+-|+++=++.|.+||..|.+ |+=..||+ |+ .+||.+||.||-|-.-+|...
T Consensus 73 ~daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIar-YIKlrtgktRTrKQVSSHIQVlarrk~r 147 (455)
T KOG3841|consen 73 RDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR-YIKLRTGKTRTRKQVSSHIQVLARRKLR 147 (455)
T ss_pred cccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHH-HHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 334468999999999999998753 45677887 77 678899999999877777643
No 52
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=90.13 E-value=0.62 Score=35.92 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHh------C-CC--CCchhHHHhhhCC-----CCCHHHHHHHHHHhhhhhh
Q 023196 26 SWTKEENKRFESALAIY------S-ES--TPDRWIKVAAMIP-----GKTVLDVIKQYKELEEDVS 77 (286)
Q Consensus 26 ~WT~EEdk~Le~Ala~~------~-~~--tpdRW~kIAa~vP-----GRT~~QV~~rYk~L~~dv~ 77 (286)
.||.++++.|..++... + .+ .+.-|..|++.|- ..|..||..||..|..+..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~ 66 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYR 66 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHH
Confidence 59999999999887543 1 11 1456999999885 3688999999999988654
No 53
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=89.96 E-value=0.59 Score=35.07 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHh-----CC-----------Cchhcchhhhc-----CCCCHHHHHHHHHHHHHHHh
Q 023196 125 VPWTEEEHKRFLMGLIKY-----GK-----------GDWRNISRNYV-----ISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~ky-----G~-----------g~W~~IA~~~V-----~tRT~~Q~~sh~qky~~r~~ 175 (286)
..||.+|-..|++.|.+| |+ .-|..|+. .| +.||..|++..|.++-...+
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~-~lN~~~~~~Rs~~~lkkkW~nlk~~~K 73 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAE-ELNALGPGKRSWKQLKKKWKNLKSKAK 73 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 379999999999999987 31 27999986 33 47999999999988876654
No 54
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=89.21 E-value=0.57 Score=46.29 Aligned_cols=47 Identities=21% Similarity=0.513 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCchhHHH-hhhCCCCCHHHHHHHHHHhhh
Q 023196 24 STSWTKEENKRFESALAIYSESTPDRWIKV-AAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kI-Aa~vPGRT~~QV~~rYk~L~~ 74 (286)
-..|+++|=+.|+..|..|+++ +..| |..|+.|++.+|++.|.....
T Consensus 277 l~~wsEeEcr~FEegl~~yGKD----F~lIr~nkvrtRsvgElVeyYYlWKk 324 (445)
T KOG4329|consen 277 LSGWSEEECRNFEEGLELYGKD----FHLIRANKVRTRSVGELVEYYYLWKK 324 (445)
T ss_pred cccCCHHHHHHHHHHHHHhccc----HHHHHhcccccchHHHHHHHHHHhhc
Confidence 3679999999999999999997 6666 567899999999999876543
No 55
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=89.02 E-value=0.85 Score=35.17 Aligned_cols=48 Identities=27% Similarity=0.514 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHh---C----CC-----chhcchhhhc----CCCCHHHHHHHHHHHHHHH
Q 023196 126 PWTEEEHKRFLMGLIKY---G----KG-----DWRNISRNYV----ISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 126 pWT~EEd~lll~gl~ky---G----~g-----~W~~IA~~~V----~tRT~~Q~~sh~qky~~r~ 174 (286)
.||+++++.||+++... | .+ .|..|+..|. ...|..||++|+. .+++.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~-~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWK-TLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHH-HHHHH
Confidence 49999999999998653 2 11 5888876332 3467889999985 44443
No 56
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=87.65 E-value=1.1 Score=46.81 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHH----------hhhCCCCCHHHHHHHHHHhhhhhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKV----------AAMIPGKTVLDVIKQYKELEEDVSD 78 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kI----------Aa~vPGRT~~QV~~rYk~L~~dv~~ 78 (286)
..+.||..|...|-.||.+|+++ +++| -..+--||..||+.+|..++..+..
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GKd----Fe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k 148 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGKD----FEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNK 148 (782)
T ss_pred cccccchhhHHHHHHHHHHhccc----HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHh
Confidence 45689999999999999999997 8887 3334469999999999988775543
No 57
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=87.59 E-value=0.75 Score=48.02 Aligned_cols=50 Identities=30% Similarity=0.428 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcc---------hhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNI---------SRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~I---------A~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
..||-.|...|..||+.+|+ ++.+| |..-+..+|..||+-||-+..+++.
T Consensus 89 taWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~ 147 (782)
T KOG4468|consen 89 TAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMN 147 (782)
T ss_pred cccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 58999999999999999999 99998 2235778899999999877777764
No 58
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=87.00 E-value=0.78 Score=40.44 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--C-CchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 25 TSWTKEENKRFESALAIYSES--T-PDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~--t-pdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
..||.|||.+|-..|-.|=.. | -.-++.|+..| +||..-|-=||+..+.
T Consensus 5 DAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VR 56 (161)
T TIGR02894 5 DAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVR 56 (161)
T ss_pred cccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence 469999999999998887432 2 13478999998 8999999999988765
No 59
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=86.45 E-value=0.78 Score=40.78 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCC---chhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 24 STSWTKEENKRFESALAIYSESTP---DRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tp---dRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
...||.|||.+|...|-.|..... +-.+.++..| +||...|-.||...+.
T Consensus 5 qdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr 57 (170)
T PRK13923 5 QDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR 57 (170)
T ss_pred hhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence 356999999999999888865432 3466777777 7999999999965544
No 60
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=83.64 E-value=1.1 Score=39.61 Aligned_cols=48 Identities=19% Similarity=0.375 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC-C-----chhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGK-G-----DWRNISRNYVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~-g-----~W~~IA~~~V~tRT~~Q~~sh~qky~~r~ 174 (286)
..||+|||.+|-+.|-+|=+ | ....+++ --+||+..|.-||..|.+++
T Consensus 5 DAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~--~L~RTsAACGFRWNs~VRkq 58 (161)
T TIGR02894 5 DAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGR--ALNRTAAACGFRWNAYVRKQ 58 (161)
T ss_pred cccccHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHcccHHHhcchHHHHHHHH
Confidence 47999999999999888732 2 3444443 46899999999999999976
No 61
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=81.12 E-value=2 Score=47.70 Aligned_cols=48 Identities=25% Similarity=0.497 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196 126 PWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 126 pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~ 174 (286)
.||.-+=..|+.|..+||+.+-..||. .|.++|+.+|+.+++-|..|.
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~-~~~~k~~~ev~~y~~~f~~~~ 873 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIAS-EMEGKTEEEVERYAKVFWERY 873 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHH-HhcCCCHHHHHHHHHHHHHhh
Confidence 599999999999999999999999996 999999999998776666553
No 62
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=80.35 E-value=1.5 Score=43.68 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhh-----CCC-CCHHHHHHHHHHhhhhh
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAM-----IPG-KTVLDVIKQYKELEEDV 76 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~-----vPG-RT~~QV~~rYk~L~~dv 76 (286)
..||.||..-|=.+...|+. ||..||.. ++. ||++|..+||..+...+
T Consensus 131 n~WskeETD~LF~lck~fDL----Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l 184 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL----RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKL 184 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe----eEEEEeeccchhhccccccHHHHHHHHHHHHHHH
Confidence 45999999999999999986 58888876 665 99999999999877654
No 63
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=80.15 E-value=2.4 Score=40.69 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHH----hCCC-----chhcchhhhc---CCCCHHHHHHHHHHHHHHHhc
Q 023196 125 VPWTEEEHKRFLMGLIK----YGKG-----DWRNISRNYV---ISKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~k----yG~g-----~W~~IA~~~V---~tRT~~Q~~sh~qky~~r~~s 176 (286)
..|+.+|=..||++..+ |..+ -|..||+.+- --||+.||+..|.+..++.+.
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~ 118 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK 118 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999998765 3334 4999997232 349999999999877776653
No 64
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=79.87 E-value=1.9 Score=38.36 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchh----hhcCCCCHHHHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISR----NYVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~----~~V~tRT~~Q~~sh~qky~~r~ 174 (286)
..||.|||.+|-+.|..|++-.=.+++. .-.-.||..+|.-||..+.+++
T Consensus 6 dawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vrk~ 59 (170)
T PRK13923 6 DAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVRKQ 59 (170)
T ss_pred hhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHHHH
Confidence 5799999999999998888643344432 0136899999999998777755
No 65
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=79.21 E-value=4.3 Score=30.44 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC-----CCCchhHHHhhhCC-CCCHHHHHHHHHHhhh
Q 023196 25 TSWTKEENKRFESALAIYSE-----STPDRWIKVAAMIP-GKTVLDVIKQYKELEE 74 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~-----~tpdRW~kIAa~vP-GRT~~QV~~rYk~L~~ 74 (286)
...|.|||..|..-|+.+.. ....-|..+|+.-| ..|-.--++||.+-+.
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~ 58 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLR 58 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 56899999999999976532 22456999999988 7888889999976553
No 66
>smart00426 TEA TEA domain.
Probab=78.14 E-value=2.2 Score=32.57 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCC
Q 023196 125 VPWTEEEHKRFLMGLIKYGKG 145 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g 145 (286)
.-|.++=+..|++||..|.+-
T Consensus 4 ~vWp~~lE~Af~~aL~~~~~~ 24 (68)
T smart00426 4 GVWSPDIEQAFQEALAIYPPC 24 (68)
T ss_pred CcCcHHHHHHHHHHHHHcCcc
Confidence 469999999999999999763
No 67
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=77.36 E-value=3.6 Score=41.81 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA 167 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~ 167 (286)
..||.||--||..+...||+ +..+|-+ .+|.|+-..+.-+|
T Consensus 188 d~WT~Ed~vlFe~aF~~~GK-~F~kIrq-~LP~rsLaSlvqyY 228 (534)
T KOG1194|consen 188 DEWTAEDIVLFEQAFQFFGK-DFHKIRQ-ALPHRSLASLVQYY 228 (534)
T ss_pred ccchHHHHHHHHHHHHHhcc-cHHHHHH-HccCccHHHHHHHH
Confidence 47999999999999999999 9999996 99999998887765
No 68
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=74.54 E-value=2.7 Score=42.95 Aligned_cols=44 Identities=23% Similarity=0.522 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHH-hhhCCCCCHHHHHHHHHHh
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKV-AAMIPGKTVLDVIKQYKEL 72 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kI-Aa~vPGRT~~QV~~rYk~L 72 (286)
-+|+.-|-.+||.||.+|+++ +..| +.++|-|+..++++.|.-.
T Consensus 286 EEWSasEanLFEeALeKyGKD----FndIrqdfLPWKSl~sIveyYYmw 330 (693)
T KOG3554|consen 286 EEWSASEANLFEEALEKYGKD----FNDIRQDFLPWKSLTSIVEYYYMW 330 (693)
T ss_pred hhccchhhHHHHHHHHHhccc----HHHHHHhhcchHHHHHHHHHHHHH
Confidence 479999999999999999998 5544 6788999999999888543
No 69
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=74.48 E-value=7.4 Score=37.30 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHh----CCC--CCchhHHHhhhCC----CCCHHHHHHHHHHhhhhhh
Q 023196 24 STSWTKEENKRFESALAIY----SES--TPDRWIKVAAMIP----GKTVLDVIKQYKELEEDVS 77 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~----~~~--tpdRW~kIAa~vP----GRT~~QV~~rYk~L~~dv~ 77 (286)
...|+.+|-..|..+-... ..+ .-.-|+.||..+. -||..||+.+|+.|..-.+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk 117 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYK 117 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 3789999999999876532 111 1345999999553 3999999999999887543
No 70
>smart00595 MADF subfamily of SANT domain.
Probab=74.01 E-value=3.3 Score=31.53 Aligned_cols=26 Identities=27% Similarity=0.581 Sum_probs=22.8
Q ss_pred hhHHHhhhCCCCCHHHHHHHHHHhhhh
Q 023196 49 RWIKVAAMIPGKTVLDVIKQYKELEED 75 (286)
Q Consensus 49 RW~kIAa~vPGRT~~QV~~rYk~L~~d 75 (286)
-|..||..+ |.|+.+|+.+|+.|...
T Consensus 29 aW~~Ia~~l-~~~~~~~~~kw~~LR~~ 54 (89)
T smart00595 29 AWEEIAEEL-GLSVEECKKRWKNLRDR 54 (89)
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 499999999 55999999999998763
No 71
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=73.93 E-value=0.8 Score=43.65 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196 126 PWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 126 pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s 176 (286)
.||++|+..|.++|..|+. .|..|-+ ++..++..+++.|+++||-.+..
T Consensus 55 ~~t~~~~~~~~~~l~~~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~p~~~~ 103 (335)
T KOG0724|consen 55 RRTPDSWDKFAEALPLEKR-LEDKIEE-YIGLVFDVNIRESGQKPFPKYGK 103 (335)
T ss_pred ccchhhhhHHHhcCccccc-cchhHHh-hhhhHHHHhhhhccCCCccccCc
Confidence 4999999999999999965 9999985 99999999999999999988753
No 72
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=69.43 E-value=13 Score=25.31 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhh
Q 023196 30 EENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE 73 (286)
Q Consensus 30 EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~ 73 (286)
+=|..+..+|..-+.- -|..||+.+ |-|...|.+|.+.|.
T Consensus 3 ~~D~~Il~~Lq~d~r~---s~~~la~~l-glS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRR---SYAELAEEL-GLSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHHHHHHHH-TTS----HHHHHHHH-TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCc---cHHHHHHHH-CcCHHHHHHHHHHhC
Confidence 3466777777766543 499999999 899999999998863
No 73
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=67.17 E-value=4.7 Score=40.63 Aligned_cols=46 Identities=30% Similarity=0.408 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-------------Cchhcchhhhc-----CCCCHHHHHHHHHHH
Q 023196 124 GVPWTEEEHKRFLMGLIKYGK-------------GDWRNISRNYV-----ISKTPTQVASHAQKY 170 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~-------------g~W~~IA~~~V-----~tRT~~Q~~sh~qky 170 (286)
.+-|+++=+..|++||..|.+ |+=..|++ |+ ..||.+||.+|-|-.
T Consensus 49 ~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~-yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 49 EGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISD-YIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp S--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHH-HHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHH-HHHHHhCcccchhHHHHHHHHH
Confidence 457999999999999999864 23345664 55 569999999999876
No 74
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=64.42 E-value=6.1 Score=41.29 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHH
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKE 71 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~ 71 (286)
...+||.+|-.+|.+++..++.+ ...|++.+|+|+.+|++..|+.
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~----~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSD----FSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred ccCcccchhhHHhhhHHhhhccc----ccccccccccccHHHHHHHHhh
Confidence 45689999999999999999976 7899999999999999999975
No 75
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=64.30 E-value=5.1 Score=41.15 Aligned_cols=58 Identities=29% Similarity=0.461 Sum_probs=41.9
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhh
Q 023196 2 ETLYPASYMSNSSNWFLQESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE 73 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~ 73 (286)
|.+||+.|+-- ...+.|++||.+.....|+.|=+.+ ....|=+++|| .+..+++.+.+
T Consensus 290 E~tYPa~~YDi---------~VtG~WseEE~~~v~~~l~~yl~k~--~~~~vIAhv~g---r~~~E~~~e~v 347 (519)
T COG1549 290 EETYPAAHYDI---------PVTGHWSEEEKEFVAELLKSYLEKT--DYRKVIAHVPG---REAVERVLEAV 347 (519)
T ss_pred HhhCcccccCc---------cccccccHHHHHHHHHHHHHHhhhc--CCceEEEEcCc---hhHHHHHhhcc
Confidence 67788877743 2678999999999999999887665 34577778999 44444444433
No 76
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=63.77 E-value=26 Score=34.31 Aligned_cols=53 Identities=19% Similarity=0.428 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHh-CCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 023196 23 RSTSWTKEENKRFESALAIY-SESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDV 76 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~-~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv 76 (286)
....||.-|.+.|.++|... +...+| -..||..|+||+..|+++--..|..-|
T Consensus 20 gp~~Ws~rEkr~Llr~Lqar~g~~epd-~ael~~~l~~Rs~aEI~~fl~~LK~rv 73 (344)
T PF11035_consen 20 GPAAWSAREKRQLLRLLQARRGQPEPD-AAELAKELPGRSEAEIRDFLQQLKGRV 73 (344)
T ss_pred CcccCcHHHHHHHHHHHHHhcCCCCcC-HHHHHhhccCcCHHHHHHHHHHHHHHH
Confidence 45789999999999998864 333355 556999999999999987777666544
No 77
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=63.47 E-value=7.6 Score=30.27 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=8.4
Q ss_pred CCCCCCHHHHHHHH
Q 023196 23 RSTSWTKEENKRFE 36 (286)
Q Consensus 23 ~~~~WT~EEdk~Le 36 (286)
..+-||+|+|+.|.
T Consensus 46 ~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 46 MPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT---HHHHHHHT
T ss_pred CCCCcCHHHHHHHH
Confidence 35789999999994
No 78
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=60.66 E-value=26 Score=30.53 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhCCC--chhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 126 PWTEEEHKRFLMGLIKYGKG--DWRNISRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 126 pWT~EEd~lll~gl~kyG~g--~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
-++..+-+.|+.+|.+||-| +|+-+-+ .+.++|...++.+..=||+++.
T Consensus 40 GFn~rQR~~Fln~vMR~G~~~f~~~w~~~-~Lr~Ks~~ei~aY~~LFm~HL~ 90 (145)
T PF06461_consen 40 GFNPRQRKAFLNAVMRYGMGAFDWKWFVP-RLRGKSEKEIRAYGSLFMRHLC 90 (145)
T ss_pred ccCHHHHHHHHHHHHHHCcCcccchHHhh-hhccccHHHHHHHHHHHHHHhc
Confidence 48899999999999999987 7887776 8999999999999866666665
No 79
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=59.47 E-value=11 Score=41.01 Aligned_cols=40 Identities=30% Similarity=0.391 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHH
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQ 68 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~r 68 (286)
..||.-+=..|.+|..+|+.++ -+.||+.+-| |+.||...
T Consensus 796 t~w~k~df~~fi~a~eKygr~d---i~~ia~~~e~-~~eev~~y 835 (971)
T KOG0385|consen 796 TNWTKRDFNQFIKANEKYGRDD---IENIAAEVEG-TPEEVGEY 835 (971)
T ss_pred cchhhhhHHHHHHHhhccCcch---hhhhHHhhcC-CHHHHHHH
Confidence 5699999999999999999764 7799999988 99998643
No 80
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=53.17 E-value=20 Score=28.75 Aligned_cols=48 Identities=25% Similarity=0.485 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHh----CCC---chhcchhhhcCCC-----CHHHHHHHHHHHHHHH
Q 023196 126 PWTEEEHKRFLMGLIKY----GKG---DWRNISRNYVISK-----TPTQVASHAQKYFIRQ 174 (286)
Q Consensus 126 pWT~EEd~lll~gl~ky----G~g---~W~~IA~~~V~tR-----T~~Q~~sh~qky~~r~ 174 (286)
-||+|++-.||+|+..| |.. +|.... ++|... |..|+...-++.-+|.
T Consensus 6 ~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~-~~vk~~l~~~~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 6 LWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFY-DFVKGSLSFDVSKNQLYDKIRRLKKKY 65 (98)
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCCCccHHHHH-HHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 59999999999999988 632 666665 355443 6778776654444443
No 81
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=51.79 E-value=37 Score=28.73 Aligned_cols=41 Identities=10% Similarity=0.167 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 30 EENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 30 EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
+-|..+..+|..-+.- -|..||+.+ |-|...|..|++.|.+
T Consensus 9 ~~D~~Il~~Lq~d~R~---s~~eiA~~l-glS~~tV~~Ri~rL~~ 49 (153)
T PRK11179 9 NLDRGILEALMENART---PYAELAKQF-GVSPGTIHVRVEKMKQ 49 (153)
T ss_pred HHHHHHHHHHHHcCCC---CHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4677888888876654 399999999 8999999999999876
No 82
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=51.49 E-value=41 Score=32.99 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=40.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHh-CC--CchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196 122 KKGVPWTEEEHKRFLMGLIKY-GK--GDWRNISRNYVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 122 kKg~pWT~EEd~lll~gl~ky-G~--g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~ 174 (286)
.....||.-|-+.||.+|+.- |. -+-..|++ .+++|+..+|++.-|..-.|.
T Consensus 19 ~gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~-~l~~Rs~aEI~~fl~~LK~rv 73 (344)
T PF11035_consen 19 TGPAAWSAREKRQLLRLLQARRGQPEPDAAELAK-ELPGRSEAEIRDFLQQLKGRV 73 (344)
T ss_pred CCcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHh-hccCcCHHHHHHHHHHHHHHH
Confidence 345789999999999999865 42 15567886 899999999998766555444
No 83
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=48.25 E-value=29 Score=23.55 Aligned_cols=38 Identities=13% Similarity=0.281 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHH
Q 023196 130 EEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQK 169 (286)
Q Consensus 130 EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qk 169 (286)
+=|+.||..|+.-|+-.|..||+ .-|=|...|..+.++
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~--~lglS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAE--ELGLSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHH--HHTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHH--HHCcCHHHHHHHHHH
Confidence 45789999999999989999996 667788999988765
No 84
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=48.04 E-value=42 Score=26.93 Aligned_cols=51 Identities=12% Similarity=0.235 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHhC----CCCCchhHHHhhhCCC-----CCHHHHHHHHHHhhhh
Q 023196 25 TSWTKEENKRFESALAIYS----ESTPDRWIKVAAMIPG-----KTVLDVIKQYKELEED 75 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~----~~tpdRW~kIAa~vPG-----RT~~QV~~rYk~L~~d 75 (286)
+.||+|++-.|.++|..|- ......|..+...|-+ -|..|+.+....|..-
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 5699999999999988873 2222346555555432 4778888777777653
No 85
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=47.51 E-value=19 Score=26.35 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=23.6
Q ss_pred hhHHHhhhCCC-CCHHHHHHHHHHhhhhh
Q 023196 49 RWIKVAAMIPG-KTVLDVIKQYKELEEDV 76 (286)
Q Consensus 49 RW~kIAa~vPG-RT~~QV~~rYk~L~~dv 76 (286)
-|..||..++. -++.+|+.+|..|....
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y 56 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNLRDRY 56 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 49999999963 58899999999988744
No 86
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=47.50 E-value=22 Score=37.23 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=39.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196 123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA 167 (286)
Q Consensus 123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~ 167 (286)
...+||.+|=.+|-.++..+|. +...|+. .++.|+..||+-.+
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs-~~slis~-l~p~R~rk~iK~K~ 450 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGS-DFSLISN-LFPLRDRKQIKAKF 450 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcc-ccccccc-ccccccHHHHHHHH
Confidence 4478999999999999999999 9999995 99999999999854
No 87
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=46.45 E-value=36 Score=29.48 Aligned_cols=48 Identities=27% Similarity=0.310 Sum_probs=39.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcC----CCCHHHHHHHHHHHH
Q 023196 122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI----SKTPTQVASHAQKYF 171 (286)
Q Consensus 122 kKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~----tRT~~Q~~sh~qky~ 171 (286)
++..+=|+.|...+..+|++||. |+..+++ =.. -.|+.||+....+|.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMar-D~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMAR-DRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhc-cCCCCcccCCHHHHHHHHHHhc
Confidence 34468999999999999999998 9999997 333 379999999887763
No 88
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=46.33 E-value=47 Score=30.32 Aligned_cols=51 Identities=10% Similarity=0.246 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC-----CCCCHHHHHHHHHHhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMI-----PGKTVLDVIKQYKELEE 74 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v-----PGRT~~QV~~rYk~L~~ 74 (286)
....||.+|+.+|........ .+...+++|=..= ++||+.+...||..+..
T Consensus 72 ~kalfS~~EE~lL~~v~s~~~-p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkq 127 (199)
T PF13325_consen 72 SKALFSKEEEQLLGTVASSSQ-PSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQ 127 (199)
T ss_pred ccCCCCHHHHHHHHhhhhccC-CcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHH
Confidence 447899999999999654432 2345677664433 48999999999997654
No 89
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=44.81 E-value=83 Score=21.39 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHH
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKE 71 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~ 71 (286)
....+|.+....|+..+...+.-+...=..||+.+ |-+..+|..=+..
T Consensus 3 ~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~-~l~~~qV~~WF~n 50 (59)
T cd00086 3 KRTRFTPEQLEELEKEFEKNPYPSREEREELAKEL-GLTERQVKIWFQN 50 (59)
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 34679999999999999987655555677999988 7899888765543
No 90
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=44.55 E-value=51 Score=22.53 Aligned_cols=41 Identities=10% Similarity=0.211 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196 130 EEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR 173 (286)
Q Consensus 130 EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r 173 (286)
++++.++...-..|. .|..||. .-+.|+..|+.+.++-..+
T Consensus 13 ~~~r~i~~l~~~~g~-s~~eIa~--~l~~s~~~v~~~l~ra~~~ 53 (54)
T PF08281_consen 13 ERQREIFLLRYFQGM-SYAEIAE--ILGISESTVKRRLRRARKK 53 (54)
T ss_dssp HHHHHHHHHHHTS----HHHHHH--HCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CHHHHHH--HHCcCHHHHHHHHHHHHhh
Confidence 455556666666777 9999996 5589999999987655443
No 91
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=44.42 E-value=45 Score=28.59 Aligned_cols=42 Identities=10% Similarity=0.181 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 29 KEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 29 ~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
.+-|.++..+|..-+.- -|..||+.+ |-|..-|.+|+++|++
T Consensus 13 D~~D~~IL~~Lq~d~R~---s~~eiA~~l-glS~~tv~~Ri~rL~~ 54 (164)
T PRK11169 13 DRIDRNILNELQKDGRI---SNVELSKRV-GLSPTPCLERVRRLER 54 (164)
T ss_pred HHHHHHHHHHhccCCCC---CHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34566666677655543 499999999 8999999999999986
No 92
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=41.58 E-value=14 Score=41.91 Aligned_cols=53 Identities=23% Similarity=0.508 Sum_probs=37.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhcchhh---hcC--------CCCHHHHHHHHHHHHHHHhc
Q 023196 123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRN---YVI--------SKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~---~V~--------tRT~~Q~~sh~qky~~r~~s 176 (286)
...-|..++|..||.||=+||-|+|..|--. .+. .=+..++..|+ .|...+.+
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~-~yLls~~~ 1195 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRA-DYLLSLLR 1195 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHH-HHHHHHHh
Confidence 3568999999999999999999999999310 011 12344566665 57776643
No 93
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=40.76 E-value=40 Score=29.53 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh
Q 023196 26 SWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL 72 (286)
Q Consensus 26 ~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L 72 (286)
.||+|+.++|.++.+. +.. =.+||..|+|.|.--|+-+.+.|
T Consensus 2 ~Wtde~~~~L~~lw~~-G~S----asqIA~~lg~vsRnAViGk~hRl 43 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-GLS----ASQIARQLGGVSRNAVIGKAHRL 43 (162)
T ss_pred CCCHHHHHHHHHHHHc-CCC----HHHHHHHhCCcchhhhhhhhhcc
Confidence 6999999999986643 211 45999999878888888777765
No 94
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=38.63 E-value=52 Score=33.09 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC------------CchhHHHhhhCC-----CCCHHHHHHHHHHh
Q 023196 23 RSTSWTKEENKRFESALAIYSEST------------PDRWIKVAAMIP-----GKTVLDVIKQYKEL 72 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~t------------pdRW~kIAa~vP-----GRT~~QV~~rYk~L 72 (286)
..+.|+++=+..|.+||++|+... =.|=+.||.+|. .||.+||--|-.-|
T Consensus 75 aegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVl 141 (455)
T KOG3841|consen 75 AEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVL 141 (455)
T ss_pred cccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 346899999999999999998632 247789999996 48889997776543
No 95
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=36.80 E-value=47 Score=36.43 Aligned_cols=49 Identities=31% Similarity=0.531 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
..||+-+=..|+.+..+||+++-..||+ .+.+ |+..|...+.-++.|+.
T Consensus 796 t~w~k~df~~fi~a~eKygr~di~~ia~-~~e~-~~eev~~y~rvfwer~~ 844 (971)
T KOG0385|consen 796 TNWTKRDFNQFIKANEKYGRDDIENIAA-EVEG-TPEEVGEYARVFWERLE 844 (971)
T ss_pred cchhhhhHHHHHHHhhccCcchhhhhHH-hhcC-CHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999997 7777 99999999888888774
No 96
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=36.78 E-value=53 Score=27.74 Aligned_cols=39 Identities=10% Similarity=0.303 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHH
Q 023196 130 EEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKY 170 (286)
Q Consensus 130 EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky 170 (286)
+-|+.||..|++-|+-.|..||+ .-+-|+..|+.|.++.
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~--~lglS~~tV~~Ri~rL 47 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAK--QFGVSPGTIHVRVEKM 47 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHH--HHCcCHHHHHHHHHHH
Confidence 57899999999999999999997 5688999999986544
No 97
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=36.27 E-value=77 Score=27.00 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=27.3
Q ss_pred HhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 023196 41 IYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVS 77 (286)
Q Consensus 41 ~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~ 77 (286)
.|......-|..||..+ ..+..+|+..+....+++.
T Consensus 93 ry~~r~~~TW~~IA~~l-~i~erta~r~~~~fK~~i~ 128 (130)
T PF05263_consen 93 RYDRRSRRTWYQIAQKL-HISERTARRWRDRFKNDIY 128 (130)
T ss_pred HHcccccchHHHHHHHh-CccHHHHHHHHHHHHHHhc
Confidence 34443333499999999 5999999999988877653
No 98
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=36.20 E-value=1.3e+02 Score=20.34 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHH
Q 023196 24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYK 70 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk 70 (286)
...+|.++...|+......+.-+...=..||+.+ |-+..+|..=+.
T Consensus 4 r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~-~l~~~qV~~WF~ 49 (56)
T smart00389 4 RTSFTPEQLEELEKEFQKNPYPSREEREELAAKL-GLSERQVKVWFQ 49 (56)
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-CcCHHHHHHhHH
Confidence 3569999999999999887744445567889888 788888765444
No 99
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=35.88 E-value=83 Score=21.64 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHH
Q 023196 24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYK 70 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk 70 (286)
...+|.++.+.|+......+.-+...-+.||..+ |-+..+|..=|.
T Consensus 4 r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l-~l~~~~V~~WF~ 49 (57)
T PF00046_consen 4 RTRFTKEQLKVLEEYFQENPYPSKEEREELAKEL-GLTERQVKNWFQ 49 (57)
T ss_dssp SSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHH-TSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccccccccccccc-cccccccccCHH
Confidence 4679999999999999885554556788999998 899988865444
No 100
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=34.81 E-value=50 Score=28.32 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHH
Q 023196 129 EEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKY 170 (286)
Q Consensus 129 ~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky 170 (286)
.+-|+.+|.+|++-|+-.|+.||+ .-+=|...|+.|.++.
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~--~lglS~~tv~~Ri~rL 52 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSK--RVGLSPTPCLERVRRL 52 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHH--HHCcCHHHHHHHHHHH
Confidence 567899999999999999999997 6688999999987654
No 101
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=32.93 E-value=68 Score=32.37 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhh----cCC-CCHHHHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNY----VIS-KTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~----V~t-RT~~Q~~sh~qky~~r~ 174 (286)
..||.||-..|..+.++|-- +|--||--| ++. ||...++.+|-..++.+
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l 184 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKL 184 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHH
Confidence 46999999999999999998 999998532 455 99999999876555554
No 102
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=31.84 E-value=1.3e+02 Score=23.24 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 30 EENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 30 EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
+.|..+..++...+.- -+..||+.+ |-+...|.++.+.|.+
T Consensus 3 ~~D~~il~~L~~~~~~---~~~~la~~l-~~s~~tv~~~l~~L~~ 43 (108)
T smart00344 3 EIDRKILEELQKDARI---SLAELAKKV-GLSPSTVHNRVKRLEE 43 (108)
T ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4577777788776543 399999998 8999999999999876
No 103
>smart00426 TEA TEA domain.
Probab=31.42 E-value=79 Score=24.23 Aligned_cols=22 Identities=32% Similarity=0.675 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC
Q 023196 24 STSWTKEENKRFESALAIYSES 45 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~ 45 (286)
...|.++=+..|..||+.|++.
T Consensus 3 ~~vWp~~lE~Af~~aL~~~~~~ 24 (68)
T smart00426 3 EGVWSPDIEQAFQEALAIYPPC 24 (68)
T ss_pred CCcCcHHHHHHHHHHHHHcCcc
Confidence 3579999999999999999853
No 104
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=28.71 E-value=61 Score=31.43 Aligned_cols=52 Identities=17% Similarity=0.334 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC-CchhHHHhhhCCC-----CCHHHHHHHHHHhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSEST-PDRWIKVAAMIPG-----KTVLDVIKQYKELEE 74 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~t-pdRW~kIAa~vPG-----RT~~QV~~rYk~L~~ 74 (286)
..+.|++|+-.+++.+.+++++.. ..+|+.+|+.+-+ |..+++++...++..
T Consensus 244 ~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~~kka~k~~K 301 (379)
T COG5269 244 KIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEK 301 (379)
T ss_pred HHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Confidence 457899999999999999988654 5789999988864 666777777665544
No 105
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.70 E-value=37 Score=30.34 Aligned_cols=28 Identities=29% Similarity=0.706 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchh
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISR 152 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~ 152 (286)
.-|-..-|-.||.||.+||-|+|..|..
T Consensus 4 ~iw~r~hdywll~gi~~hgy~rwqdi~n 31 (173)
T PF08074_consen 4 EIWHRRHDYWLLAGIVKHGYGRWQDIQN 31 (173)
T ss_pred hhhhhhhhHHHHhHHhhccchhHHHHhc
Confidence 4588888999999999999999999963
No 106
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=23.64 E-value=1.3e+02 Score=23.32 Aligned_cols=29 Identities=17% Similarity=0.465 Sum_probs=21.3
Q ss_pred CchhcchhhhcCCC-----CHHHHHHHHHHHHHHH
Q 023196 145 GDWRNISRNYVISK-----TPTQVASHAQKYFIRQ 174 (286)
Q Consensus 145 g~W~~IA~~~V~tR-----T~~Q~~sh~qky~~r~ 174 (286)
..|..||+ .+.-. ...+++.+|.+|+...
T Consensus 54 ~~W~~Va~-~lg~~~~~~~~~~~lk~~Y~k~L~~y 87 (93)
T smart00501 54 KKWKEIAR-ELGIPDTSTSAASSLRKHYERYLLPF 87 (93)
T ss_pred CCHHHHHH-HhCCCcccchHHHHHHHHHHHHhHHH
Confidence 48999997 55433 3568999999987754
No 107
>PF00674 DUP: DUP family; InterPro: IPR001142 A number of uncharacterised integral membrane proteins from yeast contain an internal duplication due to duplicated genes. Duplicated copies of genes may be classified in two types of cluster organisation. The first type includes genes sharing a significant level of identity in the amino acid sequences of their predicted protein product. They are recovered on two different chromosomes, transcribed in the same orientation and the distance between them is conserved. The second type of cluster is based on one gene unit tandemly repeated. This duplication is itself repeated elsewhere in the genome. The basic gene unit is recovered many times in the genome and is a component of a multigene family of unknown function. These organisations in clusters of genes suggest a 'Lego organisation' of the yeast chromosomes []. The proteins belonging to this family are of unknown function.
Probab=22.86 E-value=78 Score=25.47 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCCCchhHHHhhhCC
Q 023196 32 NKRFESALAIYSESTPDRWIKVAAMIP 58 (286)
Q Consensus 32 dk~Le~Ala~~~~~tpdRW~kIAa~vP 58 (286)
.+.|...++.-|...+..|+.||..+.
T Consensus 44 ~kfl~eIi~~~P~~d~~~Wd~IA~~mN 70 (108)
T PF00674_consen 44 MKFLKEIIEVKPGVDMKKWDIIASRMN 70 (108)
T ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 456666666656556788999999884
No 108
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=20.36 E-value=1.7e+02 Score=22.26 Aligned_cols=28 Identities=29% Similarity=0.563 Sum_probs=19.5
Q ss_pred CchhcchhhhcCCC---C--HHHHHHHHHHHHHH
Q 023196 145 GDWRNISRNYVISK---T--PTQVASHAQKYFIR 173 (286)
Q Consensus 145 g~W~~IA~~~V~tR---T--~~Q~~sh~qky~~r 173 (286)
+.|..||+ .++-- + ..+++.+|.+|+..
T Consensus 58 ~~W~~va~-~lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 58 KKWREVAR-KLGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp TTHHHHHH-HTTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred chHHHHHH-HhCCCCCCCcHHHHHHHHHHHHhHh
Confidence 47999997 55321 2 36799999988764
No 109
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=20.17 E-value=79 Score=23.91 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=17.0
Q ss_pred hHHHhhhCCCCCHHHHHHHHH
Q 023196 50 WIKVAAMIPGKTVLDVIKQYK 70 (286)
Q Consensus 50 W~kIAa~vPGRT~~QV~~rYk 70 (286)
-..||.++-|||+.|+++.+.
T Consensus 36 ~~~iA~~i~gks~eeir~~fg 56 (78)
T PF01466_consen 36 CKYIANMIKGKSPEEIRKYFG 56 (78)
T ss_dssp HHHHHHHHTTS-HHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHcC
Confidence 458899999999999998774
Done!