Query 023196
Match_columns 286
No_of_seqs 230 out of 1288
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 17:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9n_A MYB24; R2R3 domain, DNA 99.9 9.8E-26 3.4E-30 180.9 13.3 102 25-176 2-103 (107)
2 1gv2_A C-MYB, MYB proto-oncoge 99.9 9.6E-26 3.3E-30 179.7 11.6 101 23-173 3-103 (105)
3 3osg_A MYB21; transcription-DN 99.9 4.7E-25 1.6E-29 181.9 13.3 104 23-177 10-113 (126)
4 3zqc_A MYB3; transcription-DNA 99.9 8.8E-25 3E-29 181.2 11.2 103 24-176 2-104 (131)
5 1h8a_C AMV V-MYB, MYB transfor 99.9 1E-24 3.6E-29 179.7 10.9 109 14-172 15-125 (128)
6 1h89_C C-MYB, MYB proto-oncoge 99.9 8.5E-23 2.9E-27 173.8 10.7 99 23-171 57-155 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 2.3E-23 7.8E-28 177.3 5.3 100 23-171 5-104 (159)
8 2cqq_A RSGI RUH-037, DNAJ homo 99.8 4.9E-20 1.7E-24 139.5 7.9 65 23-89 7-71 (72)
9 2cjj_A Radialis; plant develop 99.8 8.1E-20 2.8E-24 144.6 7.8 68 23-90 7-74 (93)
10 2cu7_A KIAA1915 protein; nucle 99.7 8.1E-18 2.8E-22 126.3 7.9 64 123-188 8-71 (72)
11 1h8a_C AMV V-MYB, MYB transfor 99.7 5.5E-17 1.9E-21 133.4 5.2 73 53-171 1-73 (128)
12 1wgx_A KIAA1903 protein; MYB D 99.6 2.2E-16 7.4E-21 119.9 6.6 53 23-75 7-59 (73)
13 2cqr_A RSGI RUH-043, DNAJ homo 99.6 2.6E-16 8.8E-21 119.4 6.1 55 23-77 17-71 (73)
14 4eef_G F-HB80.4, designed hema 99.6 1.6E-16 5.6E-21 120.3 1.0 48 23-70 19-66 (74)
15 1guu_A C-MYB, MYB proto-oncoge 99.5 7.8E-15 2.7E-19 103.1 6.0 47 125-172 4-50 (52)
16 1x41_A Transcriptional adaptor 99.5 3.6E-15 1.2E-19 108.3 4.3 49 124-173 8-56 (60)
17 2yum_A ZZZ3 protein, zinc fing 99.5 5.5E-15 1.9E-19 111.3 5.3 51 124-175 8-63 (75)
18 2elk_A SPCC24B10.08C protein; 99.5 6.9E-15 2.4E-19 106.2 5.1 47 125-172 10-57 (58)
19 2xag_B REST corepressor 1; ami 99.5 3.6E-15 1.2E-19 147.0 4.6 51 122-174 378-428 (482)
20 1gvd_A MYB proto-oncogene prot 99.5 1.4E-14 4.7E-19 101.9 5.1 46 125-171 4-49 (52)
21 2d9a_A B-MYB, MYB-related prot 99.5 1.4E-14 4.9E-19 104.6 3.8 50 123-173 7-56 (60)
22 1w0t_A Telomeric repeat bindin 99.5 3.5E-14 1.2E-18 100.4 5.7 47 125-172 3-51 (53)
23 1ity_A TRF1; helix-turn-helix, 99.5 6.1E-14 2.1E-18 104.2 6.8 54 120-174 6-61 (69)
24 2dim_A Cell division cycle 5-l 99.5 3.4E-14 1.2E-18 105.7 5.1 49 23-74 8-56 (70)
25 2yus_A SWI/SNF-related matrix- 99.5 3.8E-14 1.3E-18 108.7 4.4 46 123-170 17-62 (79)
26 3sjm_A Telomeric repeat-bindin 99.4 1.1E-13 3.6E-18 102.2 6.2 49 123-172 10-60 (64)
27 2dim_A Cell division cycle 5-l 99.4 1.5E-13 5E-18 102.3 5.2 50 122-172 7-56 (70)
28 2yum_A ZZZ3 protein, zinc fing 99.4 5.7E-13 1.9E-17 100.2 7.3 64 23-89 7-72 (75)
29 2cqr_A RSGI RUH-043, DNAJ homo 99.4 2.3E-13 7.8E-18 103.1 4.5 51 122-173 16-69 (73)
30 2eqr_A N-COR1, N-COR, nuclear 99.4 6.4E-13 2.2E-17 96.9 6.1 49 117-167 5-53 (61)
31 2din_A Cell division cycle 5-l 99.4 8E-13 2.7E-17 97.2 6.2 51 123-176 8-58 (66)
32 1ign_A Protein (RAP1); RAP1,ye 99.3 3.3E-12 1.1E-16 116.0 10.7 135 23-174 7-200 (246)
33 2yus_A SWI/SNF-related matrix- 99.3 7.3E-13 2.5E-17 101.6 5.1 56 23-82 17-73 (79)
34 2ltp_A Nuclear receptor corepr 99.0 1.2E-13 4E-18 107.9 0.0 51 123-175 15-65 (89)
35 1guu_A C-MYB, MYB proto-oncoge 99.3 3E-12 1E-16 89.7 6.7 49 23-74 2-50 (52)
36 1x41_A Transcriptional adaptor 99.3 2.8E-12 9.7E-17 92.9 6.1 49 23-74 7-55 (60)
37 2ckx_A NGTRF1, telomere bindin 99.3 3.9E-12 1.3E-16 98.5 6.7 50 126-175 2-54 (83)
38 1gvd_A MYB proto-oncogene prot 99.3 5.2E-12 1.8E-16 88.6 6.5 49 23-74 2-50 (52)
39 1ofc_X ISWI protein; nuclear p 99.3 8.1E-12 2.8E-16 117.1 9.6 136 25-174 111-276 (304)
40 2aje_A Telomere repeat-binding 99.3 8.5E-12 2.9E-16 100.6 7.4 55 120-174 9-66 (105)
41 2d9a_A B-MYB, MYB-related prot 99.3 7.7E-12 2.6E-16 90.2 6.3 49 23-74 7-55 (60)
42 2din_A Cell division cycle 5-l 99.3 1E-11 3.4E-16 91.3 6.7 55 23-82 8-62 (66)
43 2llk_A Cyclin-D-binding MYB-li 99.2 5.3E-12 1.8E-16 95.6 5.2 43 123-168 22-64 (73)
44 2elk_A SPCC24B10.08C protein; 99.2 9.4E-12 3.2E-16 89.7 6.1 48 23-73 8-56 (58)
45 2juh_A Telomere binding protei 99.2 1.3E-11 4.3E-16 101.9 7.4 56 120-175 13-71 (121)
46 2roh_A RTBP1, telomere binding 99.2 3E-11 1E-15 99.8 8.6 56 120-175 27-85 (122)
47 1gv2_A C-MYB, MYB proto-oncoge 99.2 8.5E-12 2.9E-16 98.8 5.1 46 125-171 5-50 (105)
48 1w0t_A Telomeric repeat bindin 99.2 2.8E-11 9.5E-16 85.4 7.0 48 24-74 2-51 (53)
49 3sjm_A Telomeric repeat-bindin 99.2 2.7E-11 9.2E-16 89.3 7.1 49 23-74 10-60 (64)
50 2cjj_A Radialis; plant develop 99.2 2.1E-11 7.1E-16 96.3 6.1 50 125-175 9-61 (93)
51 2juh_A Telomere binding protei 99.2 3.1E-11 1E-15 99.6 6.9 84 23-149 16-103 (121)
52 2cu7_A KIAA1915 protein; nucle 99.2 5.3E-11 1.8E-15 89.0 6.4 50 23-76 8-57 (72)
53 2k9n_A MYB24; R2R3 domain, DNA 99.1 2.6E-11 8.8E-16 96.8 5.0 46 125-171 2-47 (107)
54 3zqc_A MYB3; transcription-DNA 99.1 3.7E-11 1.3E-15 99.1 5.9 47 125-172 3-49 (131)
55 2iw5_B Protein corest, REST co 99.1 2.2E-11 7.6E-16 109.8 4.5 51 122-174 131-181 (235)
56 3osg_A MYB21; transcription-DN 99.1 4.5E-11 1.5E-15 98.1 5.7 48 123-172 10-57 (126)
57 1ity_A TRF1; helix-turn-helix, 99.1 1.3E-10 4.3E-15 86.2 6.9 49 23-74 9-59 (69)
58 1x58_A Hypothetical protein 49 99.1 8.8E-11 3E-15 86.3 4.9 49 124-173 8-58 (62)
59 2eqr_A N-COR1, N-COR, nuclear 99.1 2.1E-10 7.2E-15 83.4 6.7 46 23-72 11-56 (61)
60 2roh_A RTBP1, telomere binding 99.1 2.9E-10 1E-14 93.9 8.0 79 23-144 30-113 (122)
61 2yqk_A Arginine-glutamic acid 99.0 4.7E-10 1.6E-14 82.3 6.3 46 121-167 6-51 (63)
62 2llk_A Cyclin-D-binding MYB-li 99.0 5.3E-10 1.8E-14 84.6 5.7 57 14-75 11-69 (73)
63 1wgx_A KIAA1903 protein; MYB D 99.0 3.6E-10 1.2E-14 85.7 3.8 45 125-170 9-56 (73)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1E-09 3.6E-14 82.7 5.6 46 124-171 8-56 (72)
65 2crg_A Metastasis associated p 98.9 2.1E-09 7.2E-14 80.4 7.0 45 122-167 6-50 (70)
66 2ckx_A NGTRF1, telomere bindin 98.9 1.3E-08 4.6E-13 78.6 9.4 47 25-74 1-51 (83)
67 2ltp_A Nuclear receptor corepr 98.3 4.8E-10 1.6E-14 87.4 0.0 48 23-74 15-62 (89)
68 1ign_A Protein (RAP1); RAP1,ye 98.8 2.1E-09 7.2E-14 97.7 3.6 50 125-175 9-63 (246)
69 4eef_G F-HB80.4, designed hema 98.8 1E-09 3.5E-14 83.1 1.1 44 124-168 20-66 (74)
70 2yqk_A Arginine-glutamic acid 98.7 1.8E-08 6.1E-13 73.8 6.3 46 23-72 8-54 (63)
71 2crg_A Metastasis associated p 98.6 4.2E-08 1.4E-12 73.4 6.1 46 24-73 8-54 (70)
72 2aje_A Telomere repeat-binding 98.6 7.1E-08 2.4E-12 77.7 6.6 50 22-74 11-64 (105)
73 1irz_A ARR10-B; helix-turn-hel 98.6 1.2E-07 4.1E-12 70.1 6.7 54 121-175 4-61 (64)
74 1x58_A Hypothetical protein 49 98.5 2E-07 6.8E-12 68.5 6.8 48 23-74 7-57 (62)
75 4a69_C Nuclear receptor corepr 98.5 1.2E-07 3.9E-12 74.8 5.3 42 124-167 43-84 (94)
76 4b4c_A Chromodomain-helicase-D 98.5 2.2E-06 7.5E-11 75.0 13.2 146 24-174 7-196 (211)
77 2iw5_B Protein corest, REST co 98.5 1.6E-07 5.4E-12 84.8 5.9 48 23-74 132-179 (235)
78 4a69_C Nuclear receptor corepr 98.4 2.6E-07 8.9E-12 72.8 6.1 46 24-73 43-88 (94)
79 2y9y_A Imitation switch protei 98.0 6.2E-05 2.1E-09 72.3 13.0 139 25-174 124-292 (374)
80 1fex_A TRF2-interacting telome 97.9 1.3E-05 4.3E-10 58.0 4.1 47 125-171 3-57 (59)
81 3hm5_A DNA methyltransferase 1 97.8 3.1E-05 1E-09 61.1 6.0 49 125-175 31-84 (93)
82 2xag_B REST corepressor 1; ami 97.8 2.1E-05 7.3E-10 77.8 6.3 47 23-73 379-425 (482)
83 3hm5_A DNA methyltransferase 1 97.7 9.1E-05 3.1E-09 58.4 6.7 49 25-77 31-84 (93)
84 1ug2_A 2610100B20RIK gene prod 97.5 0.00015 5.1E-09 56.9 6.0 52 23-75 32-83 (95)
85 1ug2_A 2610100B20RIK gene prod 97.5 0.00017 5.9E-09 56.6 6.3 53 122-175 31-85 (95)
86 1fex_A TRF2-interacting telome 97.4 0.00036 1.2E-08 50.3 5.9 50 24-73 2-57 (59)
87 2lr8_A CAsp8-associated protei 96.4 3.1E-05 1.1E-09 57.7 0.0 50 124-175 14-65 (70)
88 2lr8_A CAsp8-associated protei 96.4 3.6E-05 1.2E-09 57.4 0.0 49 24-74 14-62 (70)
89 2xb0_X Chromo domain-containin 97.2 0.0015 5E-08 60.3 9.6 50 24-74 3-54 (270)
90 1ofc_X ISWI protein; nuclear p 96.7 0.0021 7.3E-08 60.2 6.2 49 125-174 111-159 (304)
91 4iej_A DNA methyltransferase 1 96.7 0.0042 1.5E-07 48.8 6.8 49 25-77 31-84 (93)
92 2ebi_A DNA binding protein GT- 96.6 0.0032 1.1E-07 47.7 5.6 57 23-79 3-69 (86)
93 2ebi_A DNA binding protein GT- 96.4 0.0045 1.6E-07 46.9 5.1 52 124-176 4-68 (86)
94 4iej_A DNA methyltransferase 1 95.9 0.015 5E-07 45.8 5.8 50 125-175 31-84 (93)
95 4b4c_A Chromodomain-helicase-D 95.5 0.015 5.1E-07 50.4 5.1 51 124-174 7-60 (211)
96 1irz_A ARR10-B; helix-turn-hel 92.8 0.34 1.2E-05 35.4 6.7 49 23-72 6-56 (64)
97 2y9y_A Imitation switch protei 90.2 0.33 1.1E-05 46.6 5.4 49 125-174 124-173 (374)
98 2hzd_A Transcriptional enhance 78.5 3.6 0.00012 31.4 5.2 47 124-170 6-71 (82)
99 2xb0_X Chromo domain-containin 66.5 11 0.00039 34.4 6.5 44 125-168 4-50 (270)
100 2hzd_A Transcriptional enhance 42.0 40 0.0014 25.6 4.8 51 23-73 5-72 (82)
101 2lc3_A E3 ubiquitin-protein li 39.2 43 0.0015 25.6 4.6 53 120-173 9-79 (88)
102 2li6_A SWI/SNF chromatin-remod 38.9 25 0.00085 27.6 3.5 29 145-174 71-99 (116)
103 2jrz_A Histone demethylase jar 27.8 49 0.0017 26.0 3.5 29 145-174 62-94 (117)
104 2lm1_A Lysine-specific demethy 27.1 56 0.0019 24.9 3.7 29 145-174 66-98 (107)
105 1kkx_A Transcription regulator 26.8 38 0.0013 27.0 2.7 30 145-175 70-99 (123)
106 2ecc_A Homeobox and leucine zi 25.5 2E+02 0.0068 21.0 6.5 48 22-70 5-52 (76)
107 2eqy_A RBP2 like, jumonji, at 25.0 71 0.0024 25.2 4.0 30 145-175 64-97 (122)
108 3i4p_A Transcriptional regulat 24.3 88 0.003 25.1 4.6 106 31-168 4-121 (162)
109 2cxy_A BAF250B subunit, HBAF25 22.7 62 0.0021 25.6 3.2 30 145-175 73-106 (125)
No 1
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.93 E-value=9.8e-26 Score=180.94 Aligned_cols=102 Identities=16% Similarity=0.426 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccccc
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDY 104 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~~~ 104 (286)
+.||+|||++|..+|..|+.. +|..||..|||||..||++||...++ |..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~------------p~i--------------- 51 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMITRNPRQCRERWNNYIN------------PAL--------------- 51 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTTTSCHHHHHHHHHHHSS------------SCC---------------
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcCCCCHHHHHHHHHHHHc------------ccc---------------
Confidence 679999999999999999964 59999999999999999999998764 211
Q ss_pred hhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196 105 DANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 105 dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s 176 (286)
+.++||+|||.+|+.++.+||. +|..||+ +|++||+.||++||..++++...
T Consensus 52 ------------------~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 52 ------------------RTDPWSPEEDMLLDQKYAEYGP-KWNKISK-FLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp ------------------TTCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred ------------------cccccCHHHHHHHHHHHHHhCc-CHHHHHH-HCCCCCHHHHHHHHHHHHhhHHH
Confidence 2369999999999999999998 9999996 99999999999999988888654
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.93 E-value=9.6e-26 Score=179.67 Aligned_cols=101 Identities=24% Similarity=0.468 Sum_probs=89.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES 102 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~ 102 (286)
..+.||+|||++|..+|..|+.. +|..||++|||||..||++||...++ |.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~-------------- 53 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------PE-------------- 53 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTC------------CC--------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhhcCCCHHHHHHHHHhccC------------Cc--------------
Confidence 45789999999999999999964 59999999999999999999998654 21
Q ss_pred cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196 103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR 173 (286)
Q Consensus 103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r 173 (286)
.+.++||+|||.+|+.++.+||. +|..||+ +|||||+.||++||..++++
T Consensus 54 -------------------~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 54 -------------------VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp -------------------CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHHTC-
T ss_pred -------------------ccccCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHHHHHhc
Confidence 12369999999999999999998 9999996 99999999999999877654
No 3
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.92 E-value=4.7e-25 Score=181.87 Aligned_cols=104 Identities=20% Similarity=0.403 Sum_probs=92.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES 102 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~ 102 (286)
..+.||+|||++|..+|+.|+. +|..||+.|||||..||++||...++ |.
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p~-------------- 59 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNYLA------------PS-------------- 59 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHHTS------------TT--------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhhcc------------cc--------------
Confidence 6689999999999999999985 49999999999999999999998764 21
Q ss_pred cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhcC
Q 023196 103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSG 177 (286)
Q Consensus 103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s~ 177 (286)
. +.++||+|||++|++++++||. +|..||+ +|+|||+.||++||..+++++...
T Consensus 60 ------------------~-~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 60 ------------------I-SHTPWTAEEDALLVQKIQEYGR-QWAIIAK-FFPGRTDIHIKNRWVTISNKLGIP 113 (126)
T ss_dssp ------------------S-CCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHHHHHHTTC-
T ss_pred ------------------c-ccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHhcCCC
Confidence 1 2359999999999999999998 9999996 999999999999999888887543
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.92 E-value=8.8e-25 Score=181.16 Aligned_cols=103 Identities=15% Similarity=0.377 Sum_probs=91.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhccccc
Q 023196 24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESD 103 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~~ 103 (286)
.+.||+|||++|..+|..|+.+ +|..||..|||||..||++||...++ |..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p~~-------------- 52 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQ---NWPRITSFLPNRSPKQCRERWFNHLD------------PAV-------------- 52 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSC---CGGGGTTSCTTSCHHHHHHHHHHHTS------------TTC--------------
T ss_pred CCCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHCCCCHHHHHHHHhhccC------------ccc--------------
Confidence 4789999999999999999854 59999999999999999999998765 211
Q ss_pred chhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196 104 YDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 104 ~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s 176 (286)
+.++||+|||.+|++++.+||. +|..||+ +|+|||+.||++||..++.+..+
T Consensus 53 -------------------~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 53 -------------------VKHAWTPEEDETIFRNYLKLGS-KWSVIAK-LIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp -------------------CCSCCCHHHHHHHHHHHHHSCS-CHHHHTT-TSTTCCHHHHHHHHHHTTGGGCC
T ss_pred -------------------cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHhh
Confidence 2359999999999999999998 9999996 99999999999999988876643
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.91 E-value=1e-24 Score=179.69 Aligned_cols=109 Identities=23% Similarity=0.461 Sum_probs=90.1
Q ss_pred CCccc--cCCCCCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCC
Q 023196 14 SNWFL--QESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLS 91 (286)
Q Consensus 14 ~~~~~--~~~~~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~ 91 (286)
..|.. ......+.||+|||++|..+|..|+.+ +|..||..|||||..||++||..+++ |.
T Consensus 15 ~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~--- 76 (128)
T 1h8a_C 15 HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHLKGRIGKQCRERWHNHLN------------PE--- 76 (128)
T ss_dssp -------CTTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHSSSCCHHHHHHHHHHTTC------------SS---
T ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhcCCcHHHHHHHHHHhcc------------cc---
Confidence 45652 333367899999999999999999964 59999999999999999999998654 11
Q ss_pred CcchhhhcccccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196 92 SSFTLELVSESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF 171 (286)
Q Consensus 92 ~~f~l~~~~~~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~ 171 (286)
.+.++||+|||++|++++++||. +|..||+ +|||||+.||++||..++
T Consensus 77 ------------------------------~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 77 ------------------------------VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp ------------------------------SCCSCCCHHHHHHHHHHHHHHCS-CHHHHGG-GSTTCCHHHHHHHHHTTT
T ss_pred ------------------------------cccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence 12369999999999999999998 9999996 999999999999997654
Q ss_pred H
Q 023196 172 I 172 (286)
Q Consensus 172 ~ 172 (286)
+
T Consensus 125 ~ 125 (128)
T 1h8a_C 125 R 125 (128)
T ss_dssp T
T ss_pred h
Confidence 3
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.88 E-value=8.5e-23 Score=173.79 Aligned_cols=99 Identities=23% Similarity=0.469 Sum_probs=88.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES 102 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~ 102 (286)
..+.||.|||.+|..+|..|+.. +|..||.+|||||..||++||..++. |.
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~-------------- 107 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------PE-------------- 107 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTSTTCCHHHHHHHHHHTTC------------TT--------------
T ss_pred CCCCCChHHHHHHHHHHHHhCcc---cHHHHHHHcCCCCHHHHHHHHHHHhC------------cc--------------
Confidence 67899999999999999999853 69999999999999999999988653 11
Q ss_pred cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196 103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF 171 (286)
Q Consensus 103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~ 171 (286)
.+.++||+|||.+|++++++||. +|..||+ +|||||+.||++||..++
T Consensus 108 -------------------~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 108 -------------------VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp -------------------SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHTTT
T ss_pred -------------------ccccCCChHHHHHHHHHHHHHCC-CHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence 12369999999999999999998 9999997 999999999999997554
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.88 E-value=2.3e-23 Score=177.33 Aligned_cols=100 Identities=22% Similarity=0.476 Sum_probs=53.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccc
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSES 102 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~ 102 (286)
..+.||+|||++|.++|..|+.+ +|..||+.|||||..||++||..++. |.
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~-------------- 55 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN------------PE-------------- 55 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTC------------TT--------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHccC------------CC--------------
Confidence 45789999999999999999854 69999999999999999999987654 11
Q ss_pred cchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196 103 DYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF 171 (286)
Q Consensus 103 ~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~ 171 (286)
.+.++||+|||.+|+.++.+||.++|..||. +|++||+.||++||.+|+
T Consensus 56 -------------------~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 -------------------LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp -------------------CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHH-TSTTCCHHHHHHHHHHTT
T ss_pred -------------------cCCCCCChHHHHHHHHHHHHhCcccHHHHHH-HcCCCCHHHHHHHHHHHh
Confidence 1236999999999999999999878999996 999999999999998875
No 8
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.81 E-value=4.9e-20 Score=139.48 Aligned_cols=65 Identities=29% Similarity=0.581 Sum_probs=61.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCC
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGY 89 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y 89 (286)
....||.|||++|++||++||.++|+||++||++| |||+.||++||+.|++|+ .||+|+||+|+|
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~ 71 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSS 71 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCC
Confidence 55789999999999999999999999999999998 999999999999999996 689999999988
No 9
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.80 E-value=8.1e-20 Score=144.63 Aligned_cols=68 Identities=47% Similarity=0.864 Sum_probs=61.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCC
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYL 90 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~ 90 (286)
....||.|||++|++||++|+.++++||.+||++|||||+.||++||+.|++|+..||+|.+|+|.|.
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~ 74 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYR 74 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999995
No 10
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.72 E-value=8.1e-18 Score=126.33 Aligned_cols=64 Identities=39% Similarity=0.647 Sum_probs=59.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCccc
Q 023196 123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLSGGKDKRRPSIHD 188 (286)
Q Consensus 123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s~~k~krr~sihd 188 (286)
+.++||+|||++|+++|++||. +|..||+ +|++||+.||++||++|+++....+.++++++||+
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s 71 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 71 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 4469999999999999999999 9999997 99999999999999999999987788888999997
No 11
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.66 E-value=5.5e-17 Score=133.43 Aligned_cols=73 Identities=22% Similarity=0.469 Sum_probs=45.0
Q ss_pred HhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcccccchhhhhhhcccccccccCccCCCCCHHHH
Q 023196 53 VAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVSESDYDANRKRTLVAKSSDHERKKGVPWTEEEH 132 (286)
Q Consensus 53 IAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~~~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd 132 (286)
||+.|||||..||++||...++ |.. +.++||+|||
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~------------p~~---------------------------------~k~~Wt~eED 35 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLN------------PEL---------------------------------NKGPWTKEED 35 (128)
T ss_dssp ---------------------C------------TTC---------------------------------CCSCCCHHHH
T ss_pred CccccCCCCHHHHHHHHHHhhC------------CCC---------------------------------CCCCCCHHHH
Confidence 7999999999999999988664 211 2369999999
Q ss_pred HHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196 133 KRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF 171 (286)
Q Consensus 133 ~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~ 171 (286)
++|+++|++||.++|..||. +|++||+.||+.||.+|+
T Consensus 36 ~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 36 QRVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp HHHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHHhc
Confidence 99999999999878999996 999999999999998775
No 12
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.64 E-value=2.2e-16 Score=119.88 Aligned_cols=53 Identities=21% Similarity=0.440 Sum_probs=49.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEED 75 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~d 75 (286)
....||.||+++|++||+.||.++|+||++||++|||||+.||++||..|+.+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 34679999999999999999999999999999999999999999999998653
No 13
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.63 E-value=2.6e-16 Score=119.36 Aligned_cols=55 Identities=35% Similarity=0.566 Sum_probs=52.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVS 77 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~ 77 (286)
....||.|||++|+.||++|+.++++||.+||++|||||..||++||..|++|+.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHccc
Confidence 5678999999999999999999999999999999999999999999999998863
No 14
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.59 E-value=1.6e-16 Score=120.27 Aligned_cols=48 Identities=42% Similarity=0.706 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHH
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYK 70 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk 70 (286)
.+..||.||+|+||+||++||+++|+||++||++|||||+.||++||.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999996
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.54 E-value=7.8e-15 Score=103.07 Aligned_cols=47 Identities=28% Similarity=0.485 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI 172 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~ 172 (286)
++||+|||++|+++|++||.++|..||+ +|++||+.||+.||++|+.
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHHHcC
Confidence 6999999999999999999999999996 9999999999999998864
No 16
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=3.6e-15 Score=108.26 Aligned_cols=49 Identities=27% Similarity=0.596 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196 124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR 173 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r 173 (286)
..+||+|||++|+++|++||.++|..||+ +|++||+.||+.||++|+..
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcHHHHHH-HhCCCCHHHHHHHHHHHccC
Confidence 36999999999999999999779999996 99999999999999998764
No 17
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.5e-15 Score=111.32 Aligned_cols=51 Identities=41% Similarity=0.614 Sum_probs=47.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-----CchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 124 GVPWTEEEHKRFLMGLIKYGK-----GDWRNISRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~-----g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
..+||+|||++|+++|++||. ++|..||+ +|++||+.||++||++|+.++.
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHHHHHHHHHH
Confidence 369999999999999999995 59999996 9999999999999999998865
No 18
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.53 E-value=6.9e-15 Score=106.23 Aligned_cols=47 Identities=26% Similarity=0.506 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcC-CCCHHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI-SKTPTQVASHAQKYFI 172 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~-tRT~~Q~~sh~qky~~ 172 (286)
.+||+|||++|+++|++||.++|..||+ +|+ +||+.||+.||++||.
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~-~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIAD-YVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHHH-HHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HHCCCCCHHHHHHHHHHHcc
Confidence 5899999999999999999779999996 999 9999999999999974
No 19
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.52 E-value=3.6e-15 Score=147.03 Aligned_cols=51 Identities=31% Similarity=0.425 Sum_probs=46.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196 122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 122 kKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~ 174 (286)
+...+||+||+.+|++||.+||+ +|..||+ +|++||..||++||++|.+|+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~-~VgTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHH-HHSSCCHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HhCCCCHHHHHHHHHHHHHHh
Confidence 34679999999999999999999 9999996 999999999999999886665
No 20
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.50 E-value=1.4e-14 Score=101.92 Aligned_cols=46 Identities=26% Similarity=0.506 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF 171 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~ 171 (286)
++||+|||++|+++|.+||.++|..||+ +|++||+.||+.||++|+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcChHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence 6999999999999999999878999996 999999999999999875
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=1.4e-14 Score=104.63 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=45.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196 123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIR 173 (286)
Q Consensus 123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r 173 (286)
+.++||+|||++|+++|.+||.++|..||+ +|++||+.||+.||++|+..
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLRVLSG 56 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHHTSCS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHHHcCC
Confidence 346999999999999999999779999996 99999999999999888643
No 22
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.48 E-value=3.5e-14 Score=100.43 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcC--CCCHHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI--SKTPTQVASHAQKYFI 172 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~--tRT~~Q~~sh~qky~~ 172 (286)
++||+|||++|+++|.+||.++|..||. +++ +||+.||+.||.+|.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHHc
Confidence 5999999999999999999889999996 999 9999999999998864
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.47 E-value=6.1e-14 Score=104.19 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=48.7
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcC--CCCHHHHHHHHHHHHHHH
Q 023196 120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI--SKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 120 erkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~--tRT~~Q~~sh~qky~~r~ 174 (286)
++++.++||+|||++|+++|++||.++|..||. +++ +||+.||+.||.+|+...
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHHHHcCCC
Confidence 345567999999999999999999889999996 999 999999999999988764
No 24
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.4e-14 Score=105.72 Aligned_cols=49 Identities=16% Similarity=0.480 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
+.+.||.|||++|..+|.+|+.. +|..||..|||||..||++||...+.
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKN---QWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSS---CHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 56789999999999999999954 59999999999999999999998664
No 25
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.45 E-value=3.8e-14 Score=108.74 Aligned_cols=46 Identities=33% Similarity=0.502 Sum_probs=42.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHH
Q 023196 123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKY 170 (286)
Q Consensus 123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky 170 (286)
...+||+|||++|+++|++|| ++|..||+ +|++||+.||+.||++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~-~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVSE-HVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHHH-HHSSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHHH-HcCCCCHHHHHHHHHHh
Confidence 457999999999999999999 59999996 99999999999999765
No 26
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.44 E-value=1.1e-13 Score=102.19 Aligned_cols=49 Identities=29% Similarity=0.485 Sum_probs=44.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcC--CCCHHHHHHHHHHHHH
Q 023196 123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI--SKTPTQVASHAQKYFI 172 (286)
Q Consensus 123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~--tRT~~Q~~sh~qky~~ 172 (286)
|..+||+|||++|+++|++||.++|..||+ +++ +||+.||+.+|.++.+
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHhc
Confidence 346999999999999999999889999996 755 9999999999988754
No 27
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.5e-13 Score=102.29 Aligned_cols=50 Identities=24% Similarity=0.489 Sum_probs=45.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHH
Q 023196 122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI 172 (286)
Q Consensus 122 kKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~ 172 (286)
.+.++||+|||++|+.+|++||.++|..||+ +|++||+.||+.||.+|+.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHHHcC
Confidence 3446999999999999999999779999996 9999999999999988754
No 28
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5.7e-13 Score=100.23 Aligned_cols=64 Identities=30% Similarity=0.518 Sum_probs=52.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC--CchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCC
Q 023196 23 RSTSWTKEENKRFESALAIYSEST--PDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGY 89 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~t--pdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y 89 (286)
....||.|||++|+++|++|+.++ +.+|.+||++|||||..||++||..++... +..| .++|++
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~--~k~g-~~~pg~ 72 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL--TKAG-IPVSGP 72 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG--STTC-SCCCCS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH--HhcC-CCCCCC
Confidence 567899999999999999999765 378999999999999999999997776543 2333 356665
No 29
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=2.3e-13 Score=103.14 Aligned_cols=51 Identities=24% Similarity=0.439 Sum_probs=44.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCC---CchhcchhhhcCCCCHHHHHHHHHHHHHH
Q 023196 122 KKGVPWTEEEHKRFLMGLIKYGK---GDWRNISRNYVISKTPTQVASHAQKYFIR 173 (286)
Q Consensus 122 kKg~pWT~EEd~lll~gl~kyG~---g~W~~IA~~~V~tRT~~Q~~sh~qky~~r 173 (286)
....+||.|||++|+.+|.+||. .+|.+||+ +|||||..||++||+.+...
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~-~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHHHHSS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHc
Confidence 34569999999999999999994 38999996 99999999999999876543
No 30
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.4e-13 Score=96.86 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=45.0
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196 117 SDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA 167 (286)
Q Consensus 117 ~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~ 167 (286)
.+.+|+...+||+||+++|++++.+||+ +|..||. +|++||..||..||
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~-~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS-YLERKSVPDCVLYY 53 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH-HCTTSCHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHH
Confidence 4567777889999999999999999998 9999995 99999999999986
No 31
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=8e-13 Score=97.22 Aligned_cols=51 Identities=24% Similarity=0.420 Sum_probs=46.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHhc
Q 023196 123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~s 176 (286)
+..+||+|||++|++++++||. +|..||+ +++||+.||++||++|+.....
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~--~~gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP--IIGRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH--HHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc--ccCcCHHHHHHHHHHHhChHhc
Confidence 3469999999999999999999 9999995 6789999999999999998764
No 32
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.35 E-value=3.3e-12 Score=116.00 Aligned_cols=135 Identities=12% Similarity=0.185 Sum_probs=91.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC--CCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhhcc
Q 023196 23 RSTSWTKEENKRFESALAIYSES--TPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLELVS 100 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~--tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~~~ 100 (286)
....||+|||++|..++.++|.. +...|..||.+|||||..+|+.||..++..- ++-. +..+... -.+. .
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~--ln~v-y~~ded~---~Li~--d 78 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR--LEYV-YEVDKFG---KLVR--D 78 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG--CCCE-ECBCTTS---CBCB--C
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh--cccc-cccCcch---hhhh--c
Confidence 45789999999999999999853 2334999999999999999999999977642 1100 0000000 0000 0
Q ss_pred cccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHH-h--------------------------------C----
Q 023196 101 ESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIK-Y--------------------------------G---- 143 (286)
Q Consensus 101 ~~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~k-y--------------------------------G---- 143 (286)
. .|. +...... +...| ..||.|||-+|...+++ | |
T Consensus 79 ~---~Gn---~ikis~l-p~siK-~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (246)
T 1ign_A 79 D---DGN---LIKTKVL-PPSIK-RKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHV 150 (246)
T ss_dssp T---TSC---BCEESSC-CCCSC-CCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC---------------------
T ss_pred c---CCC---ceeeecc-Ccccc-CccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCcccc
Confidence 0 000 0000001 11223 47999999999999987 2 1
Q ss_pred --------------------CCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196 144 --------------------KGDWRNISRNYVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 144 --------------------~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~ 174 (286)
.+.|+.||+ ++|+||...+|+||.|+++..
T Consensus 151 ~~~~~~f~~~~~~~~~gp~~~~~fk~ia~-~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 151 PGSEPNFAAYRTQSRRGPIAREFFKHFAE-EHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp ----------CCCCCCCCCCTTHHHHHHH-HTTTSCHHHHHHHHHHTHHHH
T ss_pred ccCCcchhhhccccccCcchHHHHHHHHH-HCCCCChhhHHHHHHHHHhhc
Confidence 137999996 999999999999999988775
No 33
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.34 E-value=7.3e-13 Score=101.60 Aligned_cols=56 Identities=27% Similarity=0.416 Sum_probs=49.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh-hhhhhhhccC
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL-EEDVSDIEAG 82 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L-~~dv~~IE~G 82 (286)
....||+|||++|++||.+|+ ++|.+||++||+||..||+.||..+ ++|+..+|++
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~ 73 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK----DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSD 73 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCC
T ss_pred cCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHHhcccccccccCC
Confidence 457899999999999999999 3699999999999999999999998 7776555544
No 34
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-13 Score=107.93 Aligned_cols=51 Identities=37% Similarity=0.447 Sum_probs=47.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
+.++||+|||.+|++++.+||. +|..||+ +|+|||+.||++||.+|++++.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~-~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 3469999999999999999999 9999996 9999999999999999988763
No 35
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.32 E-value=3e-12 Score=89.72 Aligned_cols=49 Identities=18% Similarity=0.500 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
+.+.||.|||++|..+|..|+.+ +|..||.+|||||..||++||..+++
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999964 59999999999999999999999875
No 36
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.30 E-value=2.8e-12 Score=92.87 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
....||+|||++|.+||.+|+.+ +|.+||++|||||..||++||..++.
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcC---cHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 56789999999999999999954 59999999999999999999998765
No 37
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.29 E-value=3.9e-12 Score=98.52 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhcchhh---hcCCCCHHHHHHHHHHHHHHHh
Q 023196 126 PWTEEEHKRFLMGLIKYGKGDWRNISRN---YVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 126 pWT~EEd~lll~gl~kyG~g~W~~IA~~---~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
+||+|||++|++||++||.|+|+.|++. ++++||+.||+++|.+++++..
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999973 3899999999999999987654
No 38
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.28 E-value=5.2e-12 Score=88.62 Aligned_cols=49 Identities=22% Similarity=0.448 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
..+.||+|||++|..+|.+|+.. +|..||.+|||||..||++||...+.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999953 59999999999999999999998765
No 39
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=99.28 E-value=8.1e-12 Score=117.15 Aligned_cols=136 Identities=23% Similarity=0.277 Sum_probs=95.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhh----------hhccCCCCCCCCCCCcc
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVS----------DIEAGRVPIPGYLSSSF 94 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~----------~IE~G~v~~P~y~~~~f 94 (286)
+.||..|...|++|+++||.+ .|..||+.|+|||..+|++.|+-+..... .||.|...+..+..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~---~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~--- 184 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRD---DIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLS--- 184 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTT---CHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHH---
T ss_pred cccCHHHHHHHHHHHHHhCHH---HHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHH---
Confidence 579999999999999999975 59999999999999999988887777653 34444322111100
Q ss_pred hhhhcccccchhhhhhhcccccc------cccCccCCCCCHHHHHHHHHHHHHhCC---Cchhcchh-----------hh
Q 023196 95 TLELVSESDYDANRKRTLVAKSS------DHERKKGVPWTEEEHKRFLMGLIKYGK---GDWRNISR-----------NY 154 (286)
Q Consensus 95 ~l~~~~~~~~dg~~kr~~~~r~~------~qerkKg~pWT~EEd~lll~gl~kyG~---g~W~~IA~-----------~~ 154 (286)
+ -..+.+.....+.+ .-...++..||+|||+.||.+|.+||- |.|..|.. .|
T Consensus 185 -~-------~~~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf 256 (304)
T 1ofc_X 185 -I-------KKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWF 256 (304)
T ss_dssp -H-------HHHHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHH
T ss_pred -H-------HHHHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHH
Confidence 0 00000000000000 001125578999999999999999999 99999962 38
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 023196 155 VISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 155 V~tRT~~Q~~sh~qky~~r~ 174 (286)
+.+||+.+|..|++-.+.-+
T Consensus 257 ~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 257 IKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp HHTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHH
Confidence 99999999999998666544
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.26 E-value=8.5e-12 Score=100.64 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=48.3
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhh---cCCCCHHHHHHHHHHHHHHH
Q 023196 120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNY---VISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 120 erkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~---V~tRT~~Q~~sh~qky~~r~ 174 (286)
.+++..+||+|||++|++||++||.|+|+.|++.+ +++||..||+.+|.++++.-
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 45566899999999999999999999999999743 38999999999999887754
No 41
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.26 E-value=7.7e-12 Score=90.19 Aligned_cols=49 Identities=16% Similarity=0.408 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
..+.||+|||++|..+|.+|+.. +|..||.+|||||..||++||..++.
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQ---DWKFLASHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTT---CHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHccCCCHHHHHHHHHHHcC
Confidence 56889999999999999999953 59999999999999999999998875
No 42
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1e-11 Score=91.32 Aligned_cols=55 Identities=22% Similarity=0.558 Sum_probs=49.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccC
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAG 82 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G 82 (286)
..+.||.|||++|..+++.|+. +|.+||. +||||..||++||..++.....+|+|
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 6688999999999999999985 5999999 88999999999999999988777665
No 43
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.25 E-value=5.3e-12 Score=95.64 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=39.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHH
Q 023196 123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQ 168 (286)
Q Consensus 123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~q 168 (286)
+.++||+|||++|++++++||. +|..||+ ++ +||+.||++||.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCR 64 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHH
Confidence 3469999999999999999999 7999997 88 999999999995
No 44
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.24 E-value=9.4e-12 Score=89.70 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC-CCCHHHHHHHHHHhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIP-GKTVLDVIKQYKELE 73 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP-GRT~~QV~~rYk~L~ 73 (286)
....||+|||++|.++|.+|+.+ +|..||++|| |||..||++||..+.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~---~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLG---NWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTT---CHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999954 5999999999 999999999998753
No 45
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.24 E-value=1.3e-11 Score=101.92 Aligned_cols=56 Identities=14% Similarity=0.286 Sum_probs=49.4
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhh---cCCCCHHHHHHHHHHHHHHHh
Q 023196 120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNY---VISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 120 erkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~---V~tRT~~Q~~sh~qky~~r~~ 175 (286)
.+++..+||+|||++|++||++||.|+|+.|++.+ +++||..||+.+|.++++...
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 45566799999999999999999999999999743 499999999999999987653
No 46
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.21 E-value=3e-11 Score=99.79 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=49.3
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhCCCchhcchhhh---cCCCCHHHHHHHHHHHHHHHh
Q 023196 120 ERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNY---VISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 120 erkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~---V~tRT~~Q~~sh~qky~~r~~ 175 (286)
.+++..+||.|||++|++||++||.|+|+.|++.+ +++||..||+.+|.++++.-.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 45566799999999999999999999999999743 489999999999999987654
No 47
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.21 E-value=8.5e-12 Score=98.84 Aligned_cols=46 Identities=26% Similarity=0.492 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF 171 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~ 171 (286)
++||+|||++|+.+|++||.++|..||. +|++||+.||+.||.+|+
T Consensus 5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCcHHHHhh-hhcCCCHHHHHHHHHhcc
Confidence 6999999999999999999889999996 999999999999998874
No 48
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.21 E-value=2.8e-11 Score=85.39 Aligned_cols=48 Identities=21% Similarity=0.491 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC--CCCHHHHHHHHHHhhh
Q 023196 24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIP--GKTVLDVIKQYKELEE 74 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP--GRT~~QV~~rYk~L~~ 74 (286)
.+.||+|||++|..+|+.|+.+ +|..||..|| |||..||++||..++.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 4789999999999999999954 5999999999 9999999999998764
No 49
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.21 E-value=2.7e-11 Score=89.27 Aligned_cols=49 Identities=18% Similarity=0.549 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC--CCCHHHHHHHHHHhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIP--GKTVLDVIKQYKELEE 74 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP--GRT~~QV~~rYk~L~~ 74 (286)
....||+|||++|..+|++|+.+ +|..||+.+| |||..||++||..|+.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 66889999999999999999965 5999999977 9999999999999875
No 50
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.19 E-value=2.1e-11 Score=96.34 Aligned_cols=50 Identities=32% Similarity=0.564 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 125 VPWTEEEHKRFLMGLIKYGK---GDWRNISRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~---g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
.+||.|||++|+.+|.+||. .+|.+||+ +|||||..||++||++++....
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999984 38999996 9999999999999999887653
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.18 E-value=3.1e-11 Score=99.62 Aligned_cols=84 Identities=18% Similarity=0.295 Sum_probs=69.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC----CCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMI----PGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLEL 98 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v----PGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~ 98 (286)
....||.|||+.|..+|.+|+.+ +|..||..+ +|||..||++||..++.-.. +
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~-~------------------- 72 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS-I------------------- 72 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH-T-------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc-c-------------------
Confidence 56799999999999999999975 699999984 89999999999999886211 0
Q ss_pred cccccchhhhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCCCchhc
Q 023196 99 VSESDYDANRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRN 149 (286)
Q Consensus 99 ~~~~~~dg~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~ 149 (286)
.+..+++.+|++||+.+++.+...+|. +|.+
T Consensus 73 -------------------~p~~krg~~~p~e~~~rv~~~h~~~gn-~~~~ 103 (121)
T 2juh_A 73 -------------------APQQRRGEPVPQDLLDRVLAAHAYWSQ-QQGK 103 (121)
T ss_dssp -------------------CSTTCCCSCCCHHHHHHHHHHHHHHHH-HHCC
T ss_pred -------------------CCcccCCCCCCHHHHHHHHHHHHHHcc-chhc
Confidence 001234569999999999999999998 8876
No 52
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.15 E-value=5.3e-11 Score=89.03 Aligned_cols=50 Identities=34% Similarity=0.585 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDV 76 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv 76 (286)
..+.||.|||++|..+|..|+. +|..||.+|||||..||+.||..++...
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 6689999999999999999997 4999999999999999999999887643
No 53
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.15 E-value=2.6e-11 Score=96.82 Aligned_cols=46 Identities=33% Similarity=0.634 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYF 171 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~ 171 (286)
++||+|||++|+.+|.+||.++|..||. +|++||+.||+.||.+|+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHHHHH
Confidence 4899999999999999999889999996 999999999999998875
No 54
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.15 E-value=3.7e-11 Score=99.14 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI 172 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~ 172 (286)
++||+|||++|+.+|.+||.++|..||. +|++||+.||+.||++|+.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTT-SCTTSCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHH-HHCCCCHHHHHHHHhhccC
Confidence 5899999999999999999889999996 9999999999999988864
No 55
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.14 E-value=2.2e-11 Score=109.76 Aligned_cols=51 Identities=31% Similarity=0.425 Sum_probs=46.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196 122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 122 kKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~ 174 (286)
+...+||+||+++|++||.+||+ +|..||+ +|+|||..||++||.+|.+|+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk-~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999 9999997 999999999999999887664
No 56
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.13 E-value=4.5e-11 Score=98.09 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=44.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHH
Q 023196 123 KGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFI 172 (286)
Q Consensus 123 Kg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~ 172 (286)
+.++||+|||++|+.+|.+||. +|..||. +|++||+.||+.||.+|+.
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGS-DWKMIAA-TFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTT-CHHHHHH-TCTTCCHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHhhhcc
Confidence 3469999999999999999998 9999996 9999999999999988863
No 57
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.11 E-value=1.3e-10 Score=86.18 Aligned_cols=49 Identities=20% Similarity=0.500 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC--CCCHHHHHHHHHHhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIP--GKTVLDVIKQYKELEE 74 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP--GRT~~QV~~rYk~L~~ 74 (286)
..+.||+|||++|..+|.+|+.+ +|..||..|| |||..||++||..++.
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSS---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---cHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999954 5999999999 9999999999999887
No 58
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.08 E-value=8.8e-11 Score=86.33 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhcchh--hhcCCCCHHHHHHHHHHHHHH
Q 023196 124 GVPWTEEEHKRFLMGLIKYGKGDWRNISR--NYVISKTPTQVASHAQKYFIR 173 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~--~~V~tRT~~Q~~sh~qky~~r 173 (286)
..+||+||++.|++||++||+ +|+.|+. .|+++||...++++|....++
T Consensus 8 r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 8 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 358999999999999999999 9999993 288999999999999766544
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=2.1e-10 Score=83.44 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKEL 72 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L 72 (286)
....||+||+++|+.++++||.+ |.+||++||+||+.||+++|..-
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~----w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTC----HHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCC----HHHHHHHcCCCCHHHHHHHHHHh
Confidence 45789999999999999999964 99999999999999999999754
No 60
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.07 E-value=2.9e-10 Score=93.88 Aligned_cols=79 Identities=18% Similarity=0.200 Sum_probs=64.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC----CCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcchhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMI----PGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFTLEL 98 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v----PGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~l~~ 98 (286)
....||.|||+.|..+|.+|+.+ +|..|+..+ +|||..||+++|..++.-.. +.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~-----------~~-------- 87 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS-----------IA-------- 87 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH-----------SC--------
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc-----------CC--------
Confidence 66799999999999999999976 699999974 89999999999999885210 00
Q ss_pred cccccchhhhhhhcccccccccCccCCCCCHHH-HHHHHHHHHHhCC
Q 023196 99 VSESDYDANRKRTLVAKSSDHERKKGVPWTEEE-HKRFLMGLIKYGK 144 (286)
Q Consensus 99 ~~~~~~dg~~kr~~~~r~~~qerkKg~pWT~EE-d~lll~gl~kyG~ 144 (286)
+..+.+.|+++| +.+++++...||.
T Consensus 88 ---------------------p~~kr~~~~p~e~~~~v~~~h~~~g~ 113 (122)
T 2roh_A 88 ---------------------PQQRRGAPVPQELLDRVLAAQAYWSV 113 (122)
T ss_dssp ---------------------TTTCCCSSCCHHHHHHHHHHHHHHHS
T ss_pred ---------------------ccccCCCCCCHHHHHHHHHHHHHHhh
Confidence 011235899999 7889999999997
No 61
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4.7e-10 Score=82.27 Aligned_cols=46 Identities=30% Similarity=0.527 Sum_probs=41.5
Q ss_pred CccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196 121 RKKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA 167 (286)
Q Consensus 121 rkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~ 167 (286)
+.+..+||+||+++|++||.+||+ +|..|++++|++||..||..+|
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHH
Confidence 344579999999999999999999 9999996579999999999886
No 62
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.98 E-value=5.3e-10 Score=84.58 Aligned_cols=57 Identities=12% Similarity=0.302 Sum_probs=45.4
Q ss_pred CCccc--cCCCCCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhh
Q 023196 14 SNWFL--QESSRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEED 75 (286)
Q Consensus 14 ~~~~~--~~~~~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~d 75 (286)
.+|+. +.....+.||+|||++|.+++++|+.. |.+||.+| |||..||++||..|..+
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k----W~~IA~~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND----WATIGAAL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSSC----HHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 45552 333477899999999999999999964 99999999 99999999999987653
No 63
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.95 E-value=3.6e-10 Score=85.66 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CchhcchhhhcCCCCHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGK---GDWRNISRNYVISKTPTQVASHAQKY 170 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~---g~W~~IA~~~V~tRT~~Q~~sh~qky 170 (286)
.+||+||+++|+.||..|+. ++|.+||. +|+|||..+|+.||..+
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 57999999999999999997 58999996 99999999999998644
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.93 E-value=1e-09 Score=82.71 Aligned_cols=46 Identities=24% Similarity=0.554 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196 124 GVPWTEEEHKRFLMGLIKYGK---GDWRNISRNYVISKTPTQVASHAQKYF 171 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~---g~W~~IA~~~V~tRT~~Q~~sh~qky~ 171 (286)
..+||.||+++|+.+|.+||. .+|.+||. ++ +||..||++||+.+.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHHHHHH
Confidence 468999999999999999984 48999996 77 899999999997663
No 65
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.92 E-value=2.1e-09 Score=80.44 Aligned_cols=45 Identities=27% Similarity=0.402 Sum_probs=41.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196 122 KKGVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA 167 (286)
Q Consensus 122 kKg~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~ 167 (286)
....+||+||.++|++||.+||+ +|..|++++|++||..||..+|
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHH
Confidence 34468999999999999999999 9999996579999999999987
No 66
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.85 E-value=1.3e-08 Score=78.63 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhh----CCCCCHHHHHHHHHHhhh
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAM----IPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~----vPGRT~~QV~~rYk~L~~ 74 (286)
..||.|||+.|..+|.+|+.+ +|..|+.. |+|||..||++||..++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 369999999999999999976 59999996 899999999999999875
No 67
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.30 E-value=4.8e-10 Score=87.39 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
..+.||.|||.+|..++..||. +|..||.+|||||..||+.||..++.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR----NWSAIARMVGSKTVSQCKNFYFNYKK 62 (89)
Confidence 6688999999999999999986 49999999999999999999998765
No 68
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.79 E-value=2.1e-09 Score=97.65 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc-----hhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGD-----WRNISRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~-----W~~IA~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
.+||+|||++|++++++||..+ |..||+ +++|||+.||++||.+|+++..
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-~LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-HcCCCCHHHHHHHHHHHHhhhc
Confidence 5899999999999999999843 999996 9999999999999999987643
No 69
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.78 E-value=1e-09 Score=83.10 Aligned_cols=44 Identities=32% Similarity=0.670 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---chhcchhhhcCCCCHHHHHHHHH
Q 023196 124 GVPWTEEEHKRFLMGLIKYGKG---DWRNISRNYVISKTPTQVASHAQ 168 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~g---~W~~IA~~~V~tRT~~Q~~sh~q 168 (286)
+.+||.||+++|..||.+|+++ +|.+||. .|||||..+|+.||+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHH
Confidence 4689999999999999999976 9999996 999999999999985
No 70
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.8e-08 Score=73.81 Aligned_cols=46 Identities=26% Similarity=0.547 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhh-hCCCCCHHHHHHHHHHh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAA-MIPGKTVLDVIKQYKEL 72 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa-~vPGRT~~QV~~rYk~L 72 (286)
....||+||.++|+++|++|+++ |.+||. +||+||+.||++.|-.-
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHhcc
Confidence 34689999999999999999987 999998 69999999999999753
No 71
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.64 E-value=4.2e-08 Score=73.36 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhh-hCCCCCHHHHHHHHHHhh
Q 023196 24 STSWTKEENKRFESALAIYSESTPDRWIKVAA-MIPGKTVLDVIKQYKELE 73 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa-~vPGRT~~QV~~rYk~L~ 73 (286)
...||+||.++|+.+|++|+++ |..||. +||+||+.||++.|-.-.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~wK 54 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMWK 54 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 3689999999999999999987 999999 699999999999997533
No 72
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.59 E-value=7.1e-08 Score=77.67 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC----CCCCHHHHHHHHHHhhh
Q 023196 22 SRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMI----PGKTVLDVIKQYKELEE 74 (286)
Q Consensus 22 ~~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v----PGRT~~QV~~rYk~L~~ 74 (286)
.....||.|||+.|..+|.+|+.+ +|..|+..+ +|||..||+++|..++.
T Consensus 11 r~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 11 RIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 366899999999999999999976 699999976 89999999999999986
No 73
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=98.57 E-value=1.2e-07 Score=70.08 Aligned_cols=54 Identities=33% Similarity=0.388 Sum_probs=45.6
Q ss_pred CccCCCCCHHHHHHHHHHHHHhCCC--chhcchhhh--cCCCCHHHHHHHHHHHHHHHh
Q 023196 121 RKKGVPWTEEEHKRFLMGLIKYGKG--DWRNISRNY--VISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 121 rkKg~pWT~EEd~lll~gl~kyG~g--~W~~IA~~~--V~tRT~~Q~~sh~qky~~r~~ 175 (286)
++....||+|.|+.|++||..+|.. .++.|-+ . |++.|..||+||.|||+..++
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILD-LMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3455789999999999999999942 3788875 5 468899999999999999876
No 74
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.52 E-value=2e-07 Score=68.46 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHh---hhCCCCCHHHHHHHHHHhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVA---AMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIA---a~vPGRT~~QV~~rYk~L~~ 74 (286)
....||+||++.|.+.|.+|+.. |..|+ .++++||..++.++|..|..
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~----W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhHh----HHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 56789999999999999999964 99999 57789999999999999875
No 75
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.50 E-value=1.2e-07 Score=74.80 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHH
Q 023196 124 GVPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHA 167 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~ 167 (286)
...||+||+++|.+++..||+ +|..||. ++++||..||..+|
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~-~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLYY 84 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHH-TCTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHH-HcCCCCHHHHHHHH
Confidence 468999999999999999999 9999995 99999999999986
No 76
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=98.46 E-value=2.2e-06 Score=74.95 Aligned_cols=146 Identities=16% Similarity=0.296 Sum_probs=82.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhh--CCCCCHHHHHHHHHHhhhhhhh-h----------ccCCCCCCCCC
Q 023196 24 STSWTKEENKRFESALAIYSESTPDRWIKVAAM--IPGKTVLDVIKQYKELEEDVSD-I----------EAGRVPIPGYL 90 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~--vPGRT~~QV~~rYk~L~~dv~~-I----------E~G~v~~P~y~ 90 (286)
-..||+.|-..|.+|+.+||.. .+||+.|++. +.+||..+|.+.|..+..-... + +.+......
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~-- 83 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG-- 83 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------C--
T ss_pred CCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc--
Confidence 3679999999999999999832 3589999864 7899999998877665542211 1 111100000
Q ss_pred CCcchhhhcccccc------h---hhhhhhc-------c-ccc-ccccCccCCCCCHHHHHHHHHHHHHhCCCchhcchh
Q 023196 91 SSSFTLELVSESDY------D---ANRKRTL-------V-AKS-SDHERKKGVPWTEEEHKRFLMGLIKYGKGDWRNISR 152 (286)
Q Consensus 91 ~~~f~l~~~~~~~~------d---g~~kr~~-------~-~r~-~~qerkKg~pWT~EEd~lll~gl~kyG~g~W~~IA~ 152 (286)
..|.+.-+...+. . -+..... . .-+ ..........||++||+.||.||.+||-|+|..|..
T Consensus 84 -~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 84 -PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp -CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 0010000000000 0 0000000 0 000 001112345799999999999999999999999964
Q ss_pred h-------------hcCCCCHHHHHHHHHHHHHHH
Q 023196 153 N-------------YVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 153 ~-------------~V~tRT~~Q~~sh~qky~~r~ 174 (286)
. +..+++...+..|+. |+.++
T Consensus 163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~ 196 (211)
T 4b4c_A 163 DPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKL 196 (211)
T ss_dssp CSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHH
T ss_pred ChhcCccccccccccccCCChHHHHHHHH-HHHHH
Confidence 1 123445567899985 55554
No 77
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.46 E-value=1.6e-07 Score=84.79 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
....||.||+++|+.||++|+.+ |..||..|++||+.||+.+|.....
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999976 9999999999999999999986554
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.44 E-value=2.6e-07 Score=72.76 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhh
Q 023196 24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE 73 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~ 73 (286)
...||+||-++|++++.+||++ |.+||++||+||+.||++.|-...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTC----HHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----HHHHHHHcCCCCHHHHHHHHhccc
Confidence 4689999999999999999986 999999999999999999997543
No 79
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=98.00 E-value=6.2e-05 Score=72.32 Aligned_cols=139 Identities=22% Similarity=0.314 Sum_probs=87.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC-CCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCcch-hhhcc--
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIP-GKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLSSSFT-LELVS-- 100 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP-GRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~~~f~-l~~~~-- 100 (286)
+.||.-|=..|.+|+++||.+ .-..||+.|. |||..+|.+.++-+..-... +.+|..- +. ++-..
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~---d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~E-------i~d~eri-i~~IEkgE~k 192 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRN---SIQAIARELAPGKTLEEVRAYAKAFWSNIER-------IEDYEKY-LKIIENEEEK 192 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTT---CHHHHHSSCCCSSSHHHHHHHHHHHHHTCSS-------CSCCTTT-HHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHh---HHHHHHHHHccCCCHHHHHHHHHHHHHhhhh-------hccHHHH-HHHHHHHHHH
Confidence 579999999999999999975 5889999998 99999999655544432111 1222100 00 00000
Q ss_pred cccc----hhhhhhhccccc--------ccccCccCCCCCHHHHHHHHHHHHHhCC---Cchhcchh-----------hh
Q 023196 101 ESDY----DANRKRTLVAKS--------SDHERKKGVPWTEEEHKRFLMGLIKYGK---GDWRNISR-----------NY 154 (286)
Q Consensus 101 ~~~~----dg~~kr~~~~r~--------~~qerkKg~pWT~EEd~lll~gl~kyG~---g~W~~IA~-----------~~ 154 (286)
..-. ..+.++....+. -.....++..||+|||+.||.+|-+||- |.|..|-. -|
T Consensus 193 i~r~~~~~~~L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF 272 (374)
T 2y9y_A 193 IKRVKMQQEALRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFY 272 (374)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHH
Confidence 0000 000000000000 0011113457999999999999999998 99999932 24
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 023196 155 VISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 155 V~tRT~~Q~~sh~qky~~r~ 174 (286)
+.+||+..|..|+.-.+.-+
T Consensus 273 ~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 273 FRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp HHTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHH
Confidence 89999999999997655544
No 80
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.85 E-value=1.3e-05 Score=58.01 Aligned_cols=47 Identities=11% Similarity=0.273 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHh--------CCCchhcchhhhcCCCCHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKY--------GKGDWRNISRNYVISKTPTQVASHAQKYF 171 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~ky--------G~g~W~~IA~~~V~tRT~~Q~~sh~qky~ 171 (286)
.++|+|||++|++.|.+| |..-|+.|++..++.+|-.+++.||.|++
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 589999999999999999 66689999964799999999999998764
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.81 E-value=3.1e-05 Score=61.06 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhc-----CCCCHHHHHHHHHHHHHHHh
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYV-----ISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V-----~tRT~~Q~~sh~qky~~r~~ 175 (286)
.+||.||...|++++++||. +|..|+. .+ ++||..++++||-...+++.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~D-Ry~~~~~~~Rt~EdLK~RyY~v~~~l~ 84 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHD-RYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHH-HSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-Ceeeehh-hhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999998 9999996 66 58999999999988777775
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.81 E-value=2.1e-05 Score=77.76 Aligned_cols=47 Identities=21% Similarity=0.368 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELE 73 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~ 73 (286)
....||.||.++|+.+|.+|+.+ |..||..|++||+.||+.+|....
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkd----w~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTC----HHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45789999999999999999986 999999999999999999997543
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.67 E-value=9.1e-05 Score=58.36 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC-----CCCCHHHHHHHHHHhhhhhh
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMI-----PGKTVLDVIKQYKELEEDVS 77 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v-----PGRT~~QV~~rYk~L~~dv~ 77 (286)
..||.||+..|..++..|+. ||..|+..+ ++||+.++++||..+...+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~ 84 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 67999999999999999997 599999999 58999999999998877543
No 84
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.52 E-value=0.00015 Score=56.92 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEED 75 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~d 75 (286)
.-..||+|||+.+..+..+-+. +++.|..||+.|.+|+..||.+||.+|..-
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 3457999999999998887664 367899999999999999999999999763
No 85
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.52 E-value=0.00017 Score=56.59 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=47.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCC--CchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 122 KKGVPWTEEEHKRFLMGLIKYGK--GDWRNISRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 122 kKg~pWT~EEd~lll~gl~kyG~--g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
.+.+-||.|||+.+|...++-|. ..|..||+ .+.+|++.||++|+|..++...
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~-~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQGAQPHTFSVISQ-QLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH-HHSSCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEeccccCHHHHHHHHhcCCChhHHHHHHH-HHccCCHHHHHHHHHHHHHHHH
Confidence 34578999999999999999985 38999996 8999999999999999888775
No 86
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.35 E-value=0.00036 Score=50.30 Aligned_cols=50 Identities=8% Similarity=0.130 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC-----CCchhHHHhh-hCCCCCHHHHHHHHHHhh
Q 023196 24 STSWTKEENKRFESALAIYSES-----TPDRWIKVAA-MIPGKTVLDVIKQYKELE 73 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~-----tpdRW~kIAa-~vPGRT~~QV~~rYk~L~ 73 (286)
...+|.|||+.|...|+.+... ...-|..+|+ .+|.+|-..|++||.+-+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 4679999999999999998432 2456999999 899999999999998754
No 87
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.44 E-value=3.1e-05 Score=57.74 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 124 GVPWTEEEHKRFLMGLIKYGK--GDWRNISRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~--g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
.+-||.|||+.+|...++-|. ..|..||. -+ +||+.||.+|++..+....
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQLMKLFE 65 (70)
Confidence 468999999999999999886 38999996 66 9999999999998877654
No 88
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.39 E-value=3.6e-05 Score=57.39 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhh
Q 023196 24 STSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~ 74 (286)
--.||+|||+.+..+..+-+.. ++.|..||..+ +||+.||.+||.+|+.
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s-~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPS-SKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 3579999999998888765543 57799999999 9999999999999875
No 89
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=97.19 E-value=0.0015 Score=60.30 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhh--CCCCCHHHHHHHHHHhhh
Q 023196 24 STSWTKEENKRFESALAIYSESTPDRWIKVAAM--IPGKTVLDVIKQYKELEE 74 (286)
Q Consensus 24 ~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~--vPGRT~~QV~~rYk~L~~ 74 (286)
.+.||..|...|.+++.+|+.- .+||+.|++. |+.|+..++.+-|..|.+
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~-~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNL-KEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSC-TTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 4679999999999999999953 3589999654 568999988888877665
No 90
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.70 E-value=0.0021 Score=60.19 Aligned_cols=49 Identities=31% Similarity=0.553 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~ 174 (286)
..||..+-..|+.|+.+||+.+|..||. .|+++|+.+|+.+++-++.|.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~-ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhH
Confidence 3699999999999999999999999996 999999999999988777776
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.68 E-value=0.0042 Score=48.82 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCC-----CCCHHHHHHHHHHhhhhhh
Q 023196 25 TSWTKEENKRFESALAIYSESTPDRWIKVAAMIP-----GKTVLDVIKQYKELEEDVS 77 (286)
Q Consensus 25 ~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vP-----GRT~~QV~~rYk~L~~dv~ 77 (286)
..||.||...|-.++..|+. ||..|+.... .||+.|+++||-.+...+.
T Consensus 31 ~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~ 84 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56999999999999999997 5999999985 6999999999998877553
No 92
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.60 E-value=0.0032 Score=47.75 Aligned_cols=57 Identities=11% Similarity=0.296 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhC------CCCCchhHHHhhhCC----CCCHHHHHHHHHHhhhhhhhh
Q 023196 23 RSTSWTKEENKRFESALAIYS------ESTPDRWIKVAAMIP----GKTVLDVIKQYKELEEDVSDI 79 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~------~~tpdRW~kIAa~vP----GRT~~QV~~rYk~L~~dv~~I 79 (286)
....||.+|..+|..+..... ......|+.||+.|- .||+.||..+|+.|......+
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~ 69 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKA 69 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 357899999999999886421 122347999999975 599999999999999876543
No 93
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.36 E-value=0.0045 Score=46.91 Aligned_cols=52 Identities=13% Similarity=0.261 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---------CchhcchhhhcC----CCCHHHHHHHHHHHHHHHhc
Q 023196 124 GVPWTEEEHKRFLMGLIKYGK---------GDWRNISRNYVI----SKTPTQVASHAQKYFIRQLS 176 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~---------g~W~~IA~~~V~----tRT~~Q~~sh~qky~~r~~s 176 (286)
...||.+|-.+||.+....-. ..|..||. .+. .||+.||+..|.+.....+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~-~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS-KMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 458999999999999875321 27999996 553 79999999999888777763
No 94
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.86 E-value=0.015 Score=45.76 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhc----CCCCHHHHHHHHHHHHHHHh
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYV----ISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V----~tRT~~Q~~sh~qky~~r~~ 175 (286)
..||.||-..|++++++|+- +|--|+--+- +.||..+++.||-...+++.
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~ 84 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999998 9999996333 47999999999988888875
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.48 E-value=0.015 Score=50.43 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC--CCchhcchhh-hcCCCCHHHHHHHHHHHHHHH
Q 023196 124 GVPWTEEEHKRFLMGLIKYG--KGDWRNISRN-YVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG--~g~W~~IA~~-~V~tRT~~Q~~sh~qky~~r~ 174 (286)
-..||+.|-+.|+.++.+|| .++|..|++. -+.+||...|+..+..+..+.
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999 5799999852 267999999999887766654
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.82 E-value=0.34 Score=35.40 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhC--CCCCHHHHHHHHHHh
Q 023196 23 RSTSWTKEENKRFESALAIYSESTPDRWIKVAAMI--PGKTVLDVIKQYKEL 72 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~v--PGRT~~QV~~rYk~L 72 (286)
..-.||+|.-+.|..||..++.+ ---+..|.+.+ +|.|..+|.-|-++.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~-~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVE-RAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTT-TCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCC-CCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 44689999999999999999843 22367887775 589999998776654
No 97
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=90.16 E-value=0.33 Score=46.57 Aligned_cols=49 Identities=24% Similarity=0.443 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhcchhhhcC-CCCHHHHHHHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGKGDWRNISRNYVI-SKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~g~W~~IA~~~V~-tRT~~Q~~sh~qky~~r~ 174 (286)
..||.-+=..|+.|..+||+.+-..||. .|. ++|..+|+.++.-|+.|.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~-ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIAR-ELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHS-SCCCSSSHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHH-HHccCCCHHHHHHHHHHHHHhh
Confidence 3699999999999999999999999996 887 999999998887777765
No 98
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=78.55 E-value=3.6 Score=31.44 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-Cchhc--------------chh----hhcCCCCHHHHHHHHHHH
Q 023196 124 GVPWTEEEHKRFLMGLIKYGK-GDWRN--------------ISR----NYVISKTPTQVASHAQKY 170 (286)
Q Consensus 124 g~pWT~EEd~lll~gl~kyG~-g~W~~--------------IA~----~~V~tRT~~Q~~sh~qky 170 (286)
.+-|+++=+..|++||..|.+ |.++- ||. ..-..||..||.||-|-.
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvl 71 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVL 71 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHH
Confidence 457999999999999999975 33332 221 123679999999998743
No 99
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=66.45 E-value=11 Score=34.36 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC--Cchhcchh-hhcCCCCHHHHHHHHH
Q 023196 125 VPWTEEEHKRFLMGLIKYGK--GDWRNISR-NYVISKTPTQVASHAQ 168 (286)
Q Consensus 125 ~pWT~EEd~lll~gl~kyG~--g~W~~IA~-~~V~tRT~~Q~~sh~q 168 (286)
++||+-|-+.|+.++.+||. ++|..|++ .-++.|+...++.-++
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~ 50 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYD 50 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 57999999999999999994 69999954 2467788887655444
No 100
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=41.98 E-value=40 Score=25.59 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC------------CchhHHHhhhCC-----CCCHHHHHHHHHHhh
Q 023196 23 RSTSWTKEENKRFESALAIYSEST------------PDRWIKVAAMIP-----GKTVLDVIKQYKELE 73 (286)
Q Consensus 23 ~~~~WT~EEdk~Le~Ala~~~~~t------------pdRW~kIAa~vP-----GRT~~QV~~rYk~L~ 73 (286)
....|+++=+..|..||+.|+... +.|=+.||.+|- .||.+||--|-.-|.
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk 72 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA 72 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHH
Confidence 457899999999999999998542 223344444442 356666665555443
No 101
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=39.15 E-value=43 Score=25.64 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=33.5
Q ss_pred cCccCCCCCHHH-----------HHHHHHHHHHhCCC----chh---cchhhhcCCCCHHHHHHHHHHHHHH
Q 023196 120 ERKKGVPWTEEE-----------HKRFLMGLIKYGKG----DWR---NISRNYVISKTPTQVASHAQKYFIR 173 (286)
Q Consensus 120 erkKg~pWT~EE-----------d~lll~gl~kyG~g----~W~---~IA~~~V~tRT~~Q~~sh~qky~~r 173 (286)
+.-|++.||.|+ -+-|+.-|+.+|.- .|+ .|. +...++...|+..-|.++|.-
T Consensus 9 ~~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniK-NVaKtanK~qLiaAY~~lfE~ 79 (88)
T 2lc3_A 9 ENGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNK-SIRKNRNCSQLIAAYKDFCEH 79 (88)
T ss_dssp CSCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHH-HHHHHSCHHHHHHHHHHHHHH
T ss_pred ccCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHH-HHHhcCcHHHHHHHHHHHHhc
Confidence 455678999999 23455566666541 122 133 244588888988888777764
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=38.94 E-value=25 Score=27.62 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=23.3
Q ss_pred CchhcchhhhcCCCCHHHHHHHHHHHHHHH
Q 023196 145 GDWRNISRNYVISKTPTQVASHAQKYFIRQ 174 (286)
Q Consensus 145 g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~ 174 (286)
..|..||+ .+.--....++.+|.+|+...
T Consensus 71 ~~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 71 QQWSMVAQ-RLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp TCHHHHHH-HHTSCCTTHHHHHHHHHHSHH
T ss_pred CcHHHHHH-HhCCChHHHHHHHHHHHHHHH
Confidence 48999997 665555889999999997654
No 103
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=27.85 E-value=49 Score=25.97 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=21.3
Q ss_pred CchhcchhhhcCCCC----HHHHHHHHHHHHHHH
Q 023196 145 GDWRNISRNYVISKT----PTQVASHAQKYFIRQ 174 (286)
Q Consensus 145 g~W~~IA~~~V~tRT----~~Q~~sh~qky~~r~ 174 (286)
..|..||+ .+.--. ..+++.+|.+|+...
T Consensus 62 ~~W~~Va~-~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 62 RRWARVAQ-RLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp TTHHHHHH-HTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 38999997 554322 457999999987765
No 104
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=27.14 E-value=56 Score=24.91 Aligned_cols=29 Identities=7% Similarity=0.239 Sum_probs=21.3
Q ss_pred CchhcchhhhcCCCC----HHHHHHHHHHHHHHH
Q 023196 145 GDWRNISRNYVISKT----PTQVASHAQKYFIRQ 174 (286)
Q Consensus 145 g~W~~IA~~~V~tRT----~~Q~~sh~qky~~r~ 174 (286)
..|..||+ .+.--. ..+++.+|.+|+...
T Consensus 66 ~~W~~va~-~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 66 RKWAKVAN-RMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp TTHHHHHH-HTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 38999997 554322 458999999998765
No 105
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=26.83 E-value=38 Score=27.02 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=24.6
Q ss_pred CchhcchhhhcCCCCHHHHHHHHHHHHHHHh
Q 023196 145 GDWRNISRNYVISKTPTQVASHAQKYFIRQL 175 (286)
Q Consensus 145 g~W~~IA~~~V~tRT~~Q~~sh~qky~~r~~ 175 (286)
..|+.||+ .+.--....++.+|.+|+....
T Consensus 70 k~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 70 QQWSMVAQ-RLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp HHHHHHHH-HHTCCCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHCCChHHHHHHHHHHHHHHHH
Confidence 48999997 6655558999999999998874
No 106
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=25.54 E-value=2e+02 Score=21.04 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHH
Q 023196 22 SRSTSWTKEENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYK 70 (286)
Q Consensus 22 ~~~~~WT~EEdk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk 70 (286)
+.....|.+....|++++...+--++..=+.||..+ |-|..||..=|.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t-gLte~qIkvWFq 52 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT-GLPRPEIIQWFG 52 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-CcCHHHhhHHhH
Confidence 467889999999999999976654555667899988 788888865443
No 107
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.00 E-value=71 Score=25.24 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=22.1
Q ss_pred CchhcchhhhcCCCC----HHHHHHHHHHHHHHHh
Q 023196 145 GDWRNISRNYVISKT----PTQVASHAQKYFIRQL 175 (286)
Q Consensus 145 g~W~~IA~~~V~tRT----~~Q~~sh~qky~~r~~ 175 (286)
..|+.|++ .+.--+ ..+++.+|.+|+....
T Consensus 64 k~W~~V~~-~lg~~~~~~~~~~Lr~~Y~k~L~~yE 97 (122)
T 2eqy_A 64 RKWTKIAT-KMGFAPGKAVGSHIRGHYERILNPYN 97 (122)
T ss_dssp TTHHHHHH-HTTCCSSSHHHHHHHHHHHHTHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHH
Confidence 38999997 554322 3589999999988764
No 108
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=24.34 E-value=88 Score=25.13 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHhhhCCCCCHHHHHHHHHHhhhhhhhhccCCCCCCCCCC--C--cchhhhcccccchh
Q 023196 31 ENKRFESALAIYSESTPDRWIKVAAMIPGKTVLDVIKQYKELEEDVSDIEAGRVPIPGYLS--S--SFTLELVSESDYDA 106 (286)
Q Consensus 31 Edk~Le~Ala~~~~~tpdRW~kIAa~vPGRT~~QV~~rYk~L~~dv~~IE~G~v~~P~y~~--~--~f~l~~~~~~~~dg 106 (286)
-|..+..+|...+ +--|..||+.+ |-|...|.+|.+.|.+ .|.+. +|.. + ..+.. ..++-.
T Consensus 4 ~d~~il~~L~~~~---~~s~~~la~~l-g~s~~tv~~rl~~L~~------~g~i~--~~~a~~~~~~lG~~---~~a~v~ 68 (162)
T 3i4p_A 4 LDRKILRILQEDS---TLAVADLAKKV-GLSTTPCWRRIQKMEE------DGVIR--RRVALLDPVKVNTK---VTVFVS 68 (162)
T ss_dssp HHHHHHHHHTTCS---CSCHHHHHHHH-TCCHHHHHHHHHHHHH------TTSSC--CCCCCCCTTTTTCC---EEEEEE
T ss_pred HHHHHHHHHHHCC---CCCHHHHHHHH-CcCHHHHHHHHHHHHH------CCCee--eceeeeCHHHhcCc---EEEEEE
Confidence 4555666665443 33599999999 8999999999999876 34331 1110 0 00000 000100
Q ss_pred hhhhhcccccccccCccCCCCCHHHHHHHHHHHHHhCC--------CchhcchhhhcCCCCHHHHHHHHH
Q 023196 107 NRKRTLVAKSSDHERKKGVPWTEEEHKRFLMGLIKYGK--------GDWRNISRNYVISKTPTQVASHAQ 168 (286)
Q Consensus 107 ~~kr~~~~r~~~qerkKg~pWT~EEd~lll~gl~kyG~--------g~W~~IA~~~V~tRT~~Q~~sh~q 168 (286)
. +-.+=..+.-..|.+.|..+.. |+|.-+.. |-.++...+.....
T Consensus 69 v---------------~v~~~~~~~~~~~~~~l~~~peV~~~~~vtG~~D~~l~--v~~~d~~~l~~~l~ 121 (162)
T 3i4p_A 69 I---------------RTASHSIEWLKRFSEVVSEFPEVVEFYRMSGDVDYLLR--VVVPDIAAYDAFYK 121 (162)
T ss_dssp E---------------ECCSCCHHHHHHHHHHHHHCTTEEEEEECCSSCSEEEE--EEESSHHHHHHHHH
T ss_pred E---------------EEcCCChHHHHHHHHHHhcCCCEEEeeecCCCCCEEEE--EEECCHHHHHHHHH
Confidence 0 0012234455678888888763 88999985 77788877766443
No 109
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=22.70 E-value=62 Score=25.59 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=21.8
Q ss_pred CchhcchhhhcCCCC----HHHHHHHHHHHHHHHh
Q 023196 145 GDWRNISRNYVISKT----PTQVASHAQKYFIRQL 175 (286)
Q Consensus 145 g~W~~IA~~~V~tRT----~~Q~~sh~qky~~r~~ 175 (286)
..|..||+ .+.--+ ..+++.+|.+|+....
T Consensus 73 ~~W~~Va~-~lg~~~~~s~~~~Lk~~Y~k~L~~yE 106 (125)
T 2cxy_A 73 KKWRELAT-NLNVGTSSSAASSLKKQYIQYLFAFE 106 (125)
T ss_dssp TCHHHHHH-HTTSCSSHHHHHHHHHHHHHHTHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 38999997 554433 3579999999987763
Done!