BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023197
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 105/159 (66%), Positives = 124/159 (77%), Gaps = 4/159 (2%)
Query: 9 LPPGFRFHPTDEELIVHYLRNQATSRPCPVSIIPEVDIYKFDPWQLPEKAEFGEKEWYFF 68
LPPGFRF+PTDEEL+V YL +A + +I E+D+YKFDPW LP KA FGEKEWYFF
Sbjct: 20 LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 79
Query: 69 SPRDRKYPNGTRPNRATVSGYWKATGTDKAIYGGSKYLGVKKALVFYKGRPPKGIKTDWI 128
SPRDRKYPNG+RPNR SGYWKATGTDK I + +G+KKALVFY G+ PKG KT+WI
Sbjct: 80 SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWI 139
Query: 129 MHEYRLNDPTRQPYKHNGSMKLDDWVLCRIYKKRQTGSR 167
MHEYRL +P+R+ NGS KLDDWVLCRIYKK+ + +
Sbjct: 140 MHEYRLIEPSRR----NGSTKLDDWVLCRIYKKQSSAQK 174
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 105/159 (66%), Positives = 124/159 (77%), Gaps = 4/159 (2%)
Query: 9 LPPGFRFHPTDEELIVHYLRNQATSRPCPVSIIPEVDIYKFDPWQLPEKAEFGEKEWYFF 68
LPPGFRF+PTDEEL+V YL +A + +I E+D+YKFDPW LP KA FGEKEWYFF
Sbjct: 17 LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 76
Query: 69 SPRDRKYPNGTRPNRATVSGYWKATGTDKAIYGGSKYLGVKKALVFYKGRPPKGIKTDWI 128
SPRDRKYPNG+RPNR SGYWKATGTDK I + +G+KKALVFY G+ PKG KT+WI
Sbjct: 77 SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWI 136
Query: 129 MHEYRLNDPTRQPYKHNGSMKLDDWVLCRIYKKRQTGSR 167
MHEYRL +P+R+ NGS KLDDWVLCRIYKK+ + +
Sbjct: 137 MHEYRLIEPSRR----NGSTKLDDWVLCRIYKKQSSAQK 171
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 218 bits (556), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/162 (62%), Positives = 124/162 (76%), Gaps = 1/162 (0%)
Query: 2 EAQASTELPPGFRFHPTDEELIVHYLRNQATSRPCPVSIIPEVDIYKFDPWQLPEKAEFG 61
+A+A LPPGFRFHPTD+EL+ HYL +A + PV II EVD+YKFDPW LPE+A FG
Sbjct: 8 DAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG 67
Query: 62 EKEWYFFSPRDRKYPNGTRPNRATVSGYWKATGTDKAIYGGSKYLGVKKALVFYKGRPPK 121
+EWYFF+PRDRKYPNG+RPNRA +GYWKATG DK + + LG+KKALVFY G+ P+
Sbjct: 68 AREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPR 127
Query: 122 GIKTDWIMHEYRL-NDPTRQPYKHNGSMKLDDWVLCRIYKKR 162
G+KTDWIMHEYRL + GS++LDDWVLCR+Y K+
Sbjct: 128 GVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169
>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 7 TELPPGFRFHPTDEELIVHYL----------RNQATSRPCPVSIIPE-VDIYKFDPWQLP 55
T P G R HP +E H+L R+ + RP +I E I++ PW++P
Sbjct: 12 TAHPAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIP 71
Query: 56 EKAEF 60
+ F
Sbjct: 72 RRDWF 76
>pdb|1V03|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 7 TELPPGFRFHPTDEELIVHYL----------RNQATSRPCPVSIIPE-VDIYKFDPWQLP 55
T P G R HP +E H+L R+ + RP +I E I++ PW++P
Sbjct: 12 TAHPAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIP 71
Query: 56 EKAEF 60
+ F
Sbjct: 72 RRDWF 76
>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 7 TELPPGFRFHPTDEELIVHYL----------RNQATSRPCPVSIIPE-VDIYKFDPWQLP 55
T P G R HP +E H+L R+ + RP +I E I++ PW++P
Sbjct: 12 TAHPAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIP 71
Query: 56 EKAEF 60
+ F
Sbjct: 72 RRDWF 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,814,575
Number of Sequences: 62578
Number of extensions: 450373
Number of successful extensions: 741
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 31
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)