Query 023197
Match_columns 286
No_of_seqs 185 out of 985
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 5.8E-60 2E-64 411.9 14.7 160 5-164 11-171 (174)
2 1ut7_A No apical meristem prot 100.0 5.2E-59 1.8E-63 405.0 13.4 158 5-166 13-170 (171)
3 3nr5_A MAF1, repressor of RNA 27.2 14 0.00047 31.3 0.1 13 41-53 119-131 (164)
4 1cmb_A Met APO-repressor; DNA- 23.9 56 0.0019 25.2 2.9 39 16-58 50-88 (104)
5 2c4b_A Barnase mcoeeti fusion; 16.9 1E+02 0.0034 25.5 3.3 62 18-93 4-73 (143)
6 4dox_A Coat protein; all helix 12.8 1.2E+02 0.004 26.9 2.8 25 6-30 152-176 (226)
7 3fp5_A Acyl-COA binding protei 10.9 1.9E+02 0.0064 22.4 3.2 30 8-37 17-47 (106)
8 3alz_B CDW150; viral protein-r 9.9 68 0.0023 26.3 0.3 27 45-71 94-123 (149)
9 3g21_A GAG polyprotein, capsid 9.5 1.2E+02 0.004 22.6 1.4 14 16-29 63-76 (77)
10 1f6k_A N-acetylneuraminate lya 9.5 1.2E+02 0.004 27.1 1.7 19 8-27 105-123 (293)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=5.8e-60 Score=411.87 Aligned_cols=160 Identities=64% Similarity=1.253 Sum_probs=138.4
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHhhcCCCCCCcceeeccCCCCCCCCCCccccCCceeEEEeecCCCCCCCCCCCccc
Q 023197 5 ASTELPPGFRFHPTDEELIVHYLRNQATSRPCPVSIIPEVDIYKFDPWQLPEKAEFGEKEWYFFSPRDRKYPNGTRPNRA 84 (286)
Q Consensus 5 ~~~~LPpGfRF~PTDEELI~~YL~~Ki~g~p~p~~iI~evDVY~~~PweLp~~~~~ge~eWYFFt~r~rk~~nG~R~~R~ 84 (286)
..+.|||||||||||||||.|||++|+.|.++|..+|+++|||++|||+||+.+..++++|||||+|++||++|.|++|+
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEE
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceee
Confidence 46799999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred ccCCeEEecccCceEecCCeeeeeEEEEEEeeCCCCCCCCcCeeEeeeeeCCCCCCCC-CCCCCCCCCcEEEEEEEeeCC
Q 023197 85 TVSGYWKATGTDKAIYGGSKYLGVKKALVFYKGRPPKGIKTDWIMHEYRLNDPTRQPY-KHNGSMKLDDWVLCRIYKKRQ 163 (286)
Q Consensus 85 ~g~G~WKatG~~k~I~~~g~~VG~KktL~Fy~g~~p~g~kT~WiMhEY~L~~~~~~~~-~~~~~~~~~d~VLCRIy~k~~ 163 (286)
+++||||++|++++|.++|.+||+||+|+||.+++|++.||+|+||||+|........ ...+++++++|||||||+|++
T Consensus 91 t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp ETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESCC
T ss_pred cCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcCC
Confidence 9999999999999999888999999999999999999999999999999998754321 122346789999999999875
Q ss_pred C
Q 023197 164 T 164 (286)
Q Consensus 164 ~ 164 (286)
.
T Consensus 171 ~ 171 (174)
T 3ulx_A 171 E 171 (174)
T ss_dssp -
T ss_pred C
Confidence 3
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=5.2e-59 Score=404.97 Aligned_cols=158 Identities=66% Similarity=1.228 Sum_probs=134.1
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHhhcCCCCCCcceeeccCCCCCCCCCCccccCCceeEEEeecCCCCCCCCCCCccc
Q 023197 5 ASTELPPGFRFHPTDEELIVHYLRNQATSRPCPVSIIPEVDIYKFDPWQLPEKAEFGEKEWYFFSPRDRKYPNGTRPNRA 84 (286)
Q Consensus 5 ~~~~LPpGfRF~PTDEELI~~YL~~Ki~g~p~p~~iI~evDVY~~~PweLp~~~~~ge~eWYFFt~r~rk~~nG~R~~R~ 84 (286)
.+..|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++++||||+++++||++|.|++|+
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEE
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCccccc
Confidence 46799999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred ccCCeEEecccCceEecCCeeeeeEEEEEEeeCCCCCCCCcCeeEeeeeeCCCCCCCCCCCCCCCCCcEEEEEEEeeCCC
Q 023197 85 TVSGYWKATGTDKAIYGGSKYLGVKKALVFYKGRPPKGIKTDWIMHEYRLNDPTRQPYKHNGSMKLDDWVLCRIYKKRQT 164 (286)
Q Consensus 85 ~g~G~WKatG~~k~I~~~g~~VG~KktL~Fy~g~~p~g~kT~WiMhEY~L~~~~~~~~~~~~~~~~~d~VLCRIy~k~~~ 164 (286)
|++||||++|++++|.+++.+||+||+|+||.+++|++.||+|+||||+|..... ..+.+..++|||||||+|+..
T Consensus 93 t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~----~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 93 AGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR----RNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp ETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------CCEEEEEEEECC--
T ss_pred CCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc----ccCcccCCCEEEEEEEEcCCC
Confidence 9999999999999999988999999999999999999999999999999998742 122345799999999999865
Q ss_pred CC
Q 023197 165 GS 166 (286)
Q Consensus 165 ~~ 166 (286)
.+
T Consensus 169 ~~ 170 (171)
T 1ut7_A 169 AQ 170 (171)
T ss_dssp --
T ss_pred CC
Confidence 43
No 3
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=27.21 E-value=14 Score=31.34 Aligned_cols=13 Identities=38% Similarity=0.805 Sum_probs=11.0
Q ss_pred eeeccCCCCCCCC
Q 023197 41 IPEVDIYKFDPWQ 53 (286)
Q Consensus 41 I~evDVY~~~Pwe 53 (286)
+.++|||.+.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 5788999999983
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=23.87 E-value=56 Score=25.16 Aligned_cols=39 Identities=31% Similarity=0.462 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCcceeeccCCCCCCCCCCccc
Q 023197 16 HPTDEELIVHYLRNQATSRPCPVSIIPEVDIYKFDPWQLPEKA 58 (286)
Q Consensus 16 ~PTDEELI~~YL~~Ki~g~p~p~~iI~evDVY~~~PweLp~~~ 58 (286)
|-|.-||+..-...-..|+|+|. +.|+-+..|.++|+.+
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 56788888776667789999996 6799999999999764
No 5
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=16.89 E-value=1e+02 Score=25.52 Aligned_cols=62 Identities=21% Similarity=0.353 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHhhcCCCCCCcceeec--cCCCCCCCC------CCccccCCceeEEEeecCCCCCCCCCCCcccccCCe
Q 023197 18 TDEELIVHYLRNQATSRPCPVSIIPEV--DIYKFDPWQ------LPEKAEFGEKEWYFFSPRDRKYPNGTRPNRATVSGY 89 (286)
Q Consensus 18 TDEELI~~YL~~Ki~g~p~p~~iI~ev--DVY~~~Pwe------Lp~~~~~ge~eWYFFt~r~rk~~nG~R~~R~~g~G~ 89 (286)
|+.+-|..||.. ...||..+|... +--+-+|.. +|++...|+- |.-+++.-|. ..+|+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG~v----F~NrE~~LP~-------~~~~~ 69 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDI----FSNREGKLPG-------KSGRT 69 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEEE----ECCTTCCSCC-------CTTCC
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCCce----EecCCCcCCC-------CCCCE
Confidence 556667788876 245677766544 555667754 4555332221 5555544332 23678
Q ss_pred EEec
Q 023197 90 WKAT 93 (286)
Q Consensus 90 WKat 93 (286)
|+--
T Consensus 70 y~E~ 73 (143)
T 2c4b_A 70 WREA 73 (143)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8653
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=12.76 E-value=1.2e+02 Score=26.87 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=17.6
Q ss_pred CCCCCCCceeCCChHHHHHHHHHHh
Q 023197 6 STELPPGFRFHPTDEELIVHYLRNQ 30 (286)
Q Consensus 6 ~~~LPpGfRF~PTDEELI~~YL~~K 30 (286)
.++-+-|..+.||++|+|.+=..++
T Consensus 152 Al~P~~GLiR~PT~~E~iA~~t~K~ 176 (226)
T 4dox_A 152 AMQPPSGLTRSPTQEERIANATNKQ 176 (226)
T ss_dssp SCCCTTCCSSCCCHHHHHHHHTC--
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3444559999999999998854443
No 7
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=10.93 E-value=1.9e+02 Score=22.40 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=22.0
Q ss_pred CCCCCceeCCChHHHHHHH-HHHhhcCCCCC
Q 023197 8 ELPPGFRFHPTDEELIVHY-LRNQATSRPCP 37 (286)
Q Consensus 8 ~LPpGfRF~PTDEELI~~Y-L~~Ki~g~p~p 37 (286)
.||.+-.++|++++++..| |.+.+...+|.
T Consensus 17 ~l~~~g~~~ps~~~~L~LYalyKQAt~Gd~~ 47 (106)
T 3fp5_A 17 SLPKDGPIKPTQDEQLYFYKYFKQATVGDVN 47 (106)
T ss_dssp HCCSSSSSCCCHHHHHHHHHHHHHHHTCSCC
T ss_pred hcccccCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 3566567899999999888 66667655653
No 8
>3alz_B CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich, viral protein-membrane complex; HET: NAG; 4.51A {Saguinus oedipus}
Probab=9.86 E-value=68 Score=26.32 Aligned_cols=27 Identities=26% Similarity=0.542 Sum_probs=16.1
Q ss_pred cCCCCCCCCCCc---cccCCceeEEEeecC
Q 023197 45 DIYKFDPWQLPE---KAEFGEKEWYFFSPR 71 (286)
Q Consensus 45 DVY~~~PweLp~---~~~~ge~eWYFFt~r 71 (286)
|=|.++|..|-- .++.+++.|||-|-.
T Consensus 94 dgY~F~leNlSL~IlesrkedEGwYfmtlE 123 (149)
T 3alz_B 94 DRYRFYLENLSLAIRESTKKDEGWYFMTLE 123 (149)
T ss_dssp SSEEEETTTTEEEETTCCGGGCEEEEEEEE
T ss_pred cccEEeeccceeehhhcccccCceEEEEEe
Confidence 556666666631 223456778888754
No 9
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=9.55 E-value=1.2e+02 Score=22.56 Aligned_cols=14 Identities=29% Similarity=0.207 Sum_probs=11.0
Q ss_pred CCChHHHHHHHHHH
Q 023197 16 HPTDEELIVHYLRN 29 (286)
Q Consensus 16 ~PTDEELI~~YL~~ 29 (286)
-|+.||||.|.|.+
T Consensus 63 ~~~~~e~ik~~~~~ 76 (77)
T 3g21_A 63 LTTPGEIIKYVLDR 76 (77)
T ss_dssp CCSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHcc
Confidence 37889999887754
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=9.54 E-value=1.2e+02 Score=27.10 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=14.5
Q ss_pred CCCCCceeCCChHHHHHHHH
Q 023197 8 ELPPGFRFHPTDEELIVHYL 27 (286)
Q Consensus 8 ~LPpGfRF~PTDEELI~~YL 27 (286)
-+||-| |.||+++|+.||-
T Consensus 105 v~~P~y-~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 105 AVTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp EECCCS-SCCCHHHHHHHHH
T ss_pred ECCCCC-CCCCHHHHHHHHH
Confidence 346644 8899999998874
Done!