BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023198
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
pdb|3U30|D Chain D, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
Length = 172
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 22 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 199 IKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256
I++ L ++ ++ IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+
Sbjct: 81 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 257 FKRQQLEDDRNLASYKIVNESIVNL 281
F +QLED R L+ Y I ES ++L
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHL 165
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 21 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 79
Query: 122 NINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCE 180
NI E TL ++ + +IFV+T T T+ LEV + T+ +VK ++ + IP +
Sbjct: 80 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQR 138
Query: 181 LFRGGEQLQNLKTLAYYDIKENEVLQII 208
L G+QL++ +TL+ Y+I++ L ++
Sbjct: 139 LIFAGKQLEDGRTLSDYNIQKESTLHLV 166
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
+ AK++ E I D L +AG+QLE+G T+ DY I S +H G M+++ KT +
Sbjct: 46 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLT 105
Query: 71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL NI E TL
Sbjct: 106 G-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 164
Query: 131 MI 132
++
Sbjct: 165 LV 166
>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|G Chain G, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|C Chain C, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|E Chain E, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVO|A Chain A, Nemo Cozi Domain In Complex With Diubiquitin In C2 Space
Group
pdb|2ZVO|G Chain G, Nemo Cozi Domain In Complex With Diubiquitin In C2 Space
Group
pdb|3AXC|A Chain A, Crystal Structure Of Linear Diubiquitin
Length = 154
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 4 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 199 IKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256
I++ L ++ ++ IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+
Sbjct: 63 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 122
Query: 257 FKRQQLEDDRNLASYKIVNESIVNL 281
F +QLED R L+ Y I ES ++L
Sbjct: 123 FAGKQLEDGRTLSDYNIQKESTLHL 147
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Query: 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLD 119
G M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 GSMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 59
Query: 120 VLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSED 178
NI E TL ++ + +IFV+T T T+ LEV + T+ +VK ++ + IP +
Sbjct: 60 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQ 118
Query: 179 CELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVK 212
L G+QL++ +TL+ Y+I++ L ++ ++
Sbjct: 119 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 152
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
+ AK++ E I D L +AG+QLE+G T+ DY I S +H G M+++ KT +
Sbjct: 28 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLT 87
Query: 71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL NI E TL
Sbjct: 88 G-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 146
Query: 131 MI 132
++
Sbjct: 147 LV 148
>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin
Length = 152
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256
I++ L ++ ++ IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 257 FKRQQLEDDRNLASYKIVNESIVNL 281
F +QLED R L+ Y I ES ++L
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHL 145
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Query: 63 KLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLN 122
+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL N
Sbjct: 2 QIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 123 INNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCEL 181
I E TL ++ + +IFV+T T T+ LEV + T+ +VK ++ + IP + L
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRL 119
Query: 182 FRGGEQLQNLKTLAYYDIKENEVLQIIRHVK 212
G+QL++ +TL+ Y+I++ L ++ ++
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
+ AK++ E I D L +AG+QLE+G T+ DY I S +H G M+++ KT +
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLT 85
Query: 71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL NI E TL
Sbjct: 86 G-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 144
Query: 131 MI 132
++
Sbjct: 145 LV 146
>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|D Chain D, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|G Chain G, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|J Chain J, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B0A|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B0A|D Chain D, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
Length = 152
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVKHS--IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256
I++ L ++ ++ IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 257 FKRQQLEDDRNLASYKIVNESIVNL 281
F +QLED R L+ Y I ES ++L
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHL 145
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCE 180
NI E TL ++ + +IFV+T T T+ LEV + T+ +VK ++ + IP +
Sbjct: 60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQR 118
Query: 181 LFRGGEQLQNLKTLAYYDIKENEVLQIIRHVK 212
L G+QL++ +TL+ Y+I++ L ++ ++
Sbjct: 119 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
+ AK++ E I D L +AG+QLE+G T+ DY I S +H G M+++ KT +
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLT 85
Query: 71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL NI E TL
Sbjct: 86 G-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 144
Query: 131 MI 132
++
Sbjct: 145 LV 146
>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|F Chain F, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 152
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVKH--SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256
I++ L ++ ++ IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+
Sbjct: 61 IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 257 FKRQQLEDDRNLASYKIVNESIVNL 281
F +QLED R L+ Y I ES ++L
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHL 145
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCE 180
NI E TL ++ + +IFV+T T T+ LEV + T+ +VK ++ + IP +
Sbjct: 60 NIQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQR 118
Query: 181 LFRGGEQLQNLKTLAYYDIKENEVLQII 208
L G+QL++ +TL+ Y+I++ L ++
Sbjct: 119 LIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH---NDSGVMKLYFKTPS 70
+ AK++ E I D L +AG+QLE+G T+ DY I S +H G M+++ KT +
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGHMQIFVKTLT 85
Query: 71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQ 130
KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL NI E TL
Sbjct: 86 G-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 144
Query: 131 MI 132
++
Sbjct: 145 LV 146
>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually
Exclusive Folding: Insertion Of Ubiquitin Into Position
103 Of Barnase
Length = 189
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%)
Query: 204 VLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLE 263
+ + H IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLE
Sbjct: 97 IYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 156
Query: 264 DDRNLASYKIVNESIVNL 281
D R L+ Y I ES ++L
Sbjct: 157 DGRTLSDYNIQKESTLHL 174
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132
KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL NI E TL ++
Sbjct: 116 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 175
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 107 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 165
Query: 199 IKENEVLQII 208
I++ L ++
Sbjct: 166 IQKESTLHLV 175
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 131 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 173
>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|D Chain D, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 96
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 207 IIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDR 266
+ R IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R
Sbjct: 15 VPRGSHMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 74
Query: 267 NLASYKIVNESIVNL 281
L+ Y I ES ++L
Sbjct: 75 TLSDYNIQKESTLHL 89
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTI+N+K I+ +EGIP + + + GK +E TL
Sbjct: 21 MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 79
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 80 NIQKESTLHLV 90
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 22 QIFVKTLTGKTITLEVESSDTIDNVKSKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 199 IKENEVLQII 208
I++ L ++
Sbjct: 81 IQKESTLHLV 90
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 21 EEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 53 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 88
>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect
pdb|3JVZ|Y Chain Y, E2~ubiquitin-Hect
pdb|3JW0|X Chain X, E2~ubiquitin-Hect
pdb|3JW0|Y Chain Y, E2~ubiquitin-Hect
pdb|4AUQ|C Chain C, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|F Chain F, Structure Of Birc7-Ubch5b-Ub Complex
Length = 81
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 8 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 67
Query: 275 NESIVNL 281
ES ++L
Sbjct: 68 KESTLHL 74
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 57 NDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYI 116
G M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E
Sbjct: 1 GSGGSMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 59
Query: 117 TLDVLNINNEDTLQMI 132
TL NI E TL ++
Sbjct: 60 TLSDYNIQKESTLHLV 75
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 7 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 65
Query: 199 IKENEVLQIIRHVKHS 214
I++ L ++ ++
Sbjct: 66 IQKESTLHLVLRLRGG 81
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 31 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 73
>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2-
Ubiquitin Complex
pdb|3K9P|B Chain B, The Crystal Structure Of E2-25k And Ubiquitin Complex
pdb|3OJ3|A Chain A, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|B Chain B, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|C Chain C, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|D Chain D, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|E Chain E, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|F Chain F, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|G Chain G, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|H Chain H, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ4|B Chain B, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|E Chain E, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|C Chain C, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|D Chain D, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 79
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 6 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 65
Query: 275 NESIVNL 281
ES ++L
Sbjct: 66 KESTLHL 72
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 4 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 63 NIQKESTLHLV 73
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 5 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 199 IKENEVLQII 208
I++ L ++
Sbjct: 64 IQKESTLHLV 73
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 29 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 71
>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide-
Binding Tag
Length = 111
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%)
Query: 196 YYDIKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRL 255
Y D + ++ + IFVK L G+ I LEV DT+ +VK K+ + G PD QRL
Sbjct: 19 YIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 78
Query: 256 VFKRQQLEDDRNLASYKIVNESIVNL 281
+F +QLED R L+ Y I ES ++L
Sbjct: 79 IFAGKQLEDGRTLSDYNIQKESTLHL 104
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDV 120
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 35 AMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 93
Query: 121 LNINNEDTLQMI 132
NI E TL ++
Sbjct: 94 YNIQKESTLHLV 105
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 37 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 199 IKENEVLQIIRHVKHS 214
I++ L ++ ++
Sbjct: 96 IQKESTLHLVLRLRGG 111
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 61 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 103
>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy
pdb|2KX0|A Chain A, The Solution Structure Of Ubb+1, Frameshift Mutant Of
Ubiquitin B
Length = 103
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 11 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSEYNIQ 70
Query: 275 NESIVNL 281
ES ++L
Sbjct: 71 KESTLHL 77
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLD 119
G M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 7 GSMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 120 VLNINNEDTLQMI 132
NI E TL ++
Sbjct: 66 EYNIQKESTLHLV 78
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 134 VPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLK 192
VP+ +IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +
Sbjct: 4 VPRGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGR 62
Query: 193 TLAYYDIKENEVLQII 208
TL+ Y+I++ L ++
Sbjct: 63 TLSEYNIQKESTLHLV 78
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ +Y I S +H
Sbjct: 34 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSEYNIQKESTLH 76
>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|B Chain B, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|C Chain C, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|D Chain D, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|E Chain E, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|F Chain F, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|G Chain G, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|H Chain H, Structure Of K11-Linked Di-Ubiquitin
Length = 78
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 5 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 64
Query: 275 NESIVNL 281
ES ++L
Sbjct: 65 KESTLHL 71
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 3 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 61
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 62 NIQKESTLHLV 72
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 4 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 199 IKENEVLQII 208
I++ L ++
Sbjct: 63 IQKESTLHLV 72
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 28 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 70
>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
pdb|3DVN|X Chain X, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|U Chain U, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 80
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 6 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 65
Query: 275 NESIVNL 281
ES ++L
Sbjct: 66 KESTLHL 72
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 4 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 63 NIQKESTLHLV 73
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 5 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 199 IKENEVLQII 208
I++ L ++
Sbjct: 64 IQKESTLHLV 73
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 29 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 71
>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|F Chain F, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 80
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 7 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 66
Query: 275 NESIVNL 281
ES ++L
Sbjct: 67 KESTLHL 73
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 5 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 64 NIQKESTLHLV 74
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 6 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 64
Query: 199 IKENEVLQIIRHVKHS 214
I++ L ++ ++
Sbjct: 65 IQKESTLHLVLRLRGG 80
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 30 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 72
>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 79
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 6 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 65
Query: 275 NESIVNL 281
ES ++L
Sbjct: 66 KESTLHL 72
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITL 118
S M+++ KT + KT L+ SDTI+N+K I+ +EGIP + + + GK +E TL
Sbjct: 1 SNAMQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 59
Query: 119 DVLNINNEDTLQMI 132
NI E TL ++
Sbjct: 60 SDYNIQKESTLHLV 73
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 5 QIFVKTLTGKTITLEVESSDTIDNVKSKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 64 IQKESTLHLVLRLR 77
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 21 EEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 36 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 71
>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
Length = 152
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTI+N+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG-IPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQII 208
I++ L ++
Sbjct: 61 IQKESTLHLV 70
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 21 EEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 96
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 4 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 63
Query: 275 NESIVNL 281
ES ++L
Sbjct: 64 KESTLHL 70
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 2 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 61 NIQKESTLHLV 71
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 199 IKENEVLQII 208
I++ L ++
Sbjct: 62 IQKESTLHLV 71
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 27 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 69
>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone
Amide Noes And Backbone N-H And N-C Rdcs
Length = 77
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 4 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 63
Query: 275 NESIVNL 281
ES ++L
Sbjct: 64 KESTLHL 70
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 2 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 61 NIQKESTLHLV 71
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 62 IQKESTLHLVLRLR 75
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 27 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 69
>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
pdb|3DVN|Y Chain Y, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|V Chain V, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 79
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 6 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 65
Query: 275 NESIVNL 281
ES ++L
Sbjct: 66 RESTLHL 72
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 4 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 63 NIQRESTLHLV 73
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 5 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 199 IKENEVLQII 208
I+ L ++
Sbjct: 64 IQRESTLHLV 73
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 29 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLH 71
>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex
pdb|1Q0W|B Chain B, Solution Structure Of Vps27 Amino-Terminal Uim-Ubiquitin
Complex
pdb|1WR1|A Chain A, The Complex Sturcture Of Dsk2p Uba With Ubiquitin
pdb|2G3Q|B Chain B, Solution Structure Of Ede1 Uba-Ubiquitin Complex
pdb|2JT4|B Chain B, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
pdb|3CMM|B Chain B, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|D Chain D, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|2L00|B Chain B, Solution Structure Of The Non-Covalent Complex Of The
Znf216 A20 Domain With Ubiquitin
Length = 76
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTI+N+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 21 EEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent
Protein- Ubiquitin Fusion Protein
Length = 307
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 236 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 295
Query: 275 NESIVNL 281
ES ++L
Sbjct: 296 KESTLHL 302
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITL 118
+G M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 231 TGSMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 119 DVLNINNEDTLQMI 132
NI E TL ++
Sbjct: 290 SDYNIQKESTLHLV 303
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 235 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 293
Query: 199 IKENEVLQII 208
I++ L ++
Sbjct: 294 IQKESTLHLV 303
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 259 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 301
>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form
Length = 72
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQII 208
I++ L ++
Sbjct: 61 IQKESTLHLV 70
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX
pdb|1YX6|B Chain B, Solution Structure Of S5a Uim-2UBIQUITIN COMPLEX
Length = 98
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 152
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTI+N+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQII 208
I++ L ++
Sbjct: 61 IQKESTLHLV 70
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 21 EEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Ubiquitin
Length = 98
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 25 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 84
Query: 275 NESIVNL 281
ES ++L
Sbjct: 85 KESTLHL 91
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTI+N+K I+ +EGIP + + + GK +E TL
Sbjct: 23 MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 81
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 82 NIQKESTLHLV 92
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 24 QIFVKTLTGKTITLEVESSDTIDNVKSKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 199 IKENEVLQIIRHVKHS 214
I++ L ++ ++
Sbjct: 83 IQKESTLHLVLRLRGG 98
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 21 EEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 55 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 90
>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin
pdb|2KJH|B Chain B, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
pdb|4DHJ|D Chain D, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|H Chain H, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|E Chain E, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 76
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|E Chain E, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|G Chain G, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
Length = 73
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQII 208
I++ L ++
Sbjct: 61 IQKESTLHLV 70
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
pdb|1AAR|B Chain B, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
pdb|1TBE|A Chain A, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
pdb|1TBE|B Chain B, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
pdb|1F9J|A Chain A, Structure Of A New Crystal Form Of Tetraubiquitin
pdb|1F9J|B Chain B, Structure Of A New Crystal Form Of Tetraubiquitin
pdb|1P3Q|U Chain U, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
pdb|1P3Q|V Chain V, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
pdb|1UZX|B Chain B, A Complex Of The Vps23 Uev With Ubiquitin
pdb|1YD8|U Chain U, Complex Of Human Gga3 Gat Domain And Ubiquitin
pdb|1YD8|V Chain V, Complex Of Human Gga3 Gat Domain And Ubiquitin
pdb|1WR6|E Chain E, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|F Chain F, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|G Chain G, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|H Chain H, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WRD|B Chain B, Crystal Structure Of Tom1 Gat Domain In Complex With
Ubiquitin
pdb|2D3G|A Chain A, Double Sided Ubiquitin Binding Of Hrs-Uim
pdb|2D3G|B Chain B, Double Sided Ubiquitin Binding Of Hrs-Uim
pdb|2C7M|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|D Chain D, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|F Chain F, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|H Chain H, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|J Chain J, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|L Chain L, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2FID|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|C Chain C, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|E Chain E, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2G45|B Chain B, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In Complex
With Ubiquitin
pdb|2G45|E Chain E, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In Complex
With Ubiquitin
pdb|2HD5|B Chain B, Usp2 In Complex With Ubiquitin
pdb|2GMI|C Chain C, Mms2UBC13~UBIQUITIN
pdb|2DX5|B Chain B, The Complex Structure Between The Mouse Eap45-Glue Domain
And Ubiquitin
pdb|2HTH|A Chain A, Structural Basis For Ubiquitin Recognition By The Human
Eap45ESCRT-Ii Glue Domain
pdb|2OOB|B Chain B, Crystal Structure Of The Uba Domain From Cbl-B Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2O6V|A Chain A, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
pdb|2O6V|C Chain C, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
pdb|2O6V|E Chain E, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
pdb|2O6V|G Chain G, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
pdb|2PE9|A Chain A, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global Rotational
Diffusion Tensor From Nmr Relaxation Measurements
pdb|2PE9|B Chain B, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global Rotational
Diffusion Tensor From Nmr Relaxation Measurements
pdb|2PEA|A Chain A, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global Rotational
Diffusion Tensor From Nmr Relaxation Measurements
pdb|2PEA|B Chain B, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global Rotational
Diffusion Tensor From Nmr Relaxation Measurements
pdb|1UBI|A Chain A, Synthetic Structural And Biological Studies Of The
Ubiquitin System. Part 1
pdb|1UBQ|A Chain A, Structure Of Ubiquitin Refined At 1.8 Angstroms Resolution
pdb|2QHO|A Chain A, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|C Chain C, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|E Chain E, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|G Chain G, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|1D3Z|A Chain A, Ubiquitin Nmr Structure
pdb|1FXT|B Chain B, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1Q5W|B Chain B, Ubiquitin Recognition By Npl4 Zinc-Fingers
pdb|1V80|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
pdb|1V81|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
pdb|1XQQ|A Chain A, Simultaneous Determination Of Protein Structure And
Dynamics
pdb|2BGF|A Chain A, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using Chemical
Shift Perturbation Data Together With Rdcs And 15n-
Relaxation Data
pdb|2BGF|B Chain B, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using Chemical
Shift Perturbation Data Together With Rdcs And 15n-
Relaxation Data
pdb|2DEN|B Chain B, Solution Structure Of The Ubiquitin-Associated Domain Of
Human Bmsc-Ubp And Its Complex With Ubiquitin
pdb|2FUH|B Chain B, Solution Structure Of The Ubch5cUB NON-Covalent Complex
pdb|2NR2|A Chain A, The Mumo (Minimal Under-Restraining Minimal Over-
Restraining) Method For The Determination Of Native
States Ensembles Of Proteins
pdb|2ZCC|A Chain A, Ubiquitin Crystallized Under High Pressure
pdb|2ZCC|B Chain B, Ubiquitin Crystallized Under High Pressure
pdb|2ZCC|C Chain C, Ubiquitin Crystallized Under High Pressure
pdb|2JF5|A Chain A, Crystal Structure Of Lys63-Linked Di-Ubiquitin
pdb|2JF5|B Chain B, Crystal Structure Of Lys63-Linked Di-Ubiquitin
pdb|2JY6|A Chain A, Solution Structure Of The Complex Of Ubiquitin And
Ubiquilin 1 Uba Domain
pdb|2JZZ|A Chain A, Solid-State Nmr Structure Of Microcrystalline Ubiquitin
pdb|2Z59|B Chain B, Complex Structures Of Mouse Rpn13 (22-130aa) And Ubiquitin
pdb|2K39|A Chain A, Recognition Dynamics Up To Microseconds Revealed From Rdc
Derived Ubiquitin Ensemble In Solution
pdb|2JRI|B Chain B, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
pdb|2JRI|C Chain C, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
pdb|3EFU|A Chain A, X-Ray Structure Of Human Ubiquitin-Hg(Ii) Adduct
pdb|3EEC|A Chain A, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
pdb|3EEC|B Chain B, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
pdb|3EHV|A Chain A, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|3EHV|B Chain B, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|3EHV|C Chain C, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|2K8B|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding Domain
(Pfuc) Cis Isomer In Complex With Ubiquitin
pdb|2K8C|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding Domain
(Pfuc) Trans Isomer In Complex With Ubiquitin
pdb|3H1U|A Chain A, Structure Of Ubiquitin In Complex With Cd Ions
pdb|3H1U|B Chain B, Structure Of Ubiquitin In Complex With Cd Ions
pdb|3HM3|A Chain A, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|B Chain B, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|C Chain C, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|D Chain D, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|2KDE|B Chain B, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDE|C Chain C, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDF|B Chain B, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDF|C Chain C, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
pdb|3H7P|B Chain B, Crystal Structure Of K63-Linked Di-Ubiquitin
pdb|2KLG|A Chain A, Pere Nmr Structure Of Ubiquitin
pdb|2KN5|A Chain A, A Correspondence Between Solution-State Dynamics Of An
Individual Protein And The Sequence And Conformational
Diversity Of Its Family
pdb|2WWZ|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P212121
pdb|2WWZ|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P212121
pdb|2WX0|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P21
pdb|2WX0|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P21
pdb|2WX0|E Chain E, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P21
pdb|2WX0|F Chain F, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P21
pdb|2WX1|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
pdb|2WX1|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
pdb|3A33|B Chain B, Ubch5b~ubiquitin Conjugate
pdb|3M3J|A Chain A, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|B Chain B, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|C Chain C, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|D Chain D, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|E Chain E, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|F Chain F, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3NHE|B Chain B, High Resolution Structure (1.26a) Of Usp2a In Complex With
Ubiquitin
pdb|2XEW|A Chain A, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|B Chain B, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|C Chain C, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|D Chain D, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|E Chain E, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|F Chain F, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|G Chain G, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|H Chain H, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|I Chain I, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|J Chain J, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|K Chain K, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|L Chain L, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XK5|A Chain A, Crystal Structure Of K6-Linked Diubiquitin
pdb|3ALB|A Chain A, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|B Chain B, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|C Chain C, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|D Chain D, Cyclic Lys48-Linked Tetraubiquitin
pdb|3OFI|C Chain C, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|D Chain D, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|2KWU|B Chain B, Solution Structure Of Ubm2 Of Murine Polymerase Iota In
Complex With Ubiquitin
pdb|2KWV|B Chain B, Solution Structure Of Ubm1 Of Murine Polymerase Iota In
Complex With Ubiquitin
pdb|2KTF|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2 In
Complex With Ubiquitin
pdb|2L0F|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2
(P692a Mutant) In Complex With Ubiquitin
pdb|2L0T|A Chain A, Solution Structure Of The Complex Of Ubiquitin And The Vhs
Domain Of Stam2
pdb|3N30|A Chain A, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
pdb|3N30|B Chain B, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
pdb|3N32|A Chain A, The Crystal Structure Of Human Ubiquitin Adduct With
Zeise's Salt
pdb|2L3Z|A Chain A, Proton-Detected 4d Dream Solid-State Nmr Structure Of
Ubiquitin
pdb|3PHD|E Chain E, Crystal Structure Of Human Hdac6 In Complex With Ubiquitin
pdb|3PHD|F Chain F, Crystal Structure Of Human Hdac6 In Complex With Ubiquitin
pdb|3PHD|G Chain G, Crystal Structure Of Human Hdac6 In Complex With Ubiquitin
pdb|3PHD|H Chain H, Crystal Structure Of Human Hdac6 In Complex With Ubiquitin
pdb|2XBB|C Chain C, Nedd4 Hect:ub Complex
pdb|2XBB|D Chain D, Nedd4 Hect:ub Complex
pdb|2KOX|A Chain A, Nmr Residual Dipolar Couplings Identify Long Range
Correlated Motions In The Backbone Of The Protein
Ubiquitin
pdb|2RR9|A Chain A, The Solution Structure Of The K63-Ub2:tuims Complex
pdb|2RR9|B Chain B, The Solution Structure Of The K63-Ub2:tuims Complex
pdb|3NS8|A Chain A, Crystal Structure Of An Open Conformation Of Lys48-Linked
Diubiquitin At Ph 7.5
pdb|3NS8|B Chain B, Crystal Structure Of An Open Conformation Of Lys48-Linked
Diubiquitin At Ph 7.5
pdb|3AUL|A Chain A, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin In
An Open Conformation
pdb|3AUL|B Chain B, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin In
An Open Conformation
pdb|4DDG|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|O Chain O, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|P Chain P, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|3UGB|B Chain B, Ubch5c~ubiquitin Conjugate
pdb|3TBL|D Chain D, Structure Of Mono-Ubiquitinated Pcna: Implications For Dna
Polymerase Switching And Okazaki Fragment Maturation
pdb|3TBL|E Chain E, Structure Of Mono-Ubiquitinated Pcna: Implications For Dna
Polymerase Switching And Okazaki Fragment Maturation
pdb|4DDG|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|M Chain M, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|N Chain N, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|Q Chain Q, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|R Chain R, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|2LJ5|A Chain A, Description Of The Structural Fluctuations Of Proteins
From Structure- Based Calculations Of Residual Dipolar
Couplings
pdb|3VHT|C Chain C, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion Protein
In Complex With Ubiquitin
pdb|2LVO|A Chain A, Structure Of The Gp78cue Domain Bound To Monubiquitin
pdb|2LVP|A Chain A, Gp78cue Domain Bound To The Distal Ubiquitin Of K48-Linked
Diubiquitin
pdb|2LVP|B Chain B, Gp78cue Domain Bound To The Distal Ubiquitin Of K48-Linked
Diubiquitin
pdb|2LVQ|A Chain A, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
pdb|2LVQ|B Chain B, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
pdb|3VUW|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUW|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUW|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUX|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUX|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUX|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUY|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
pdb|3VUY|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
pdb|3VUY|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
Length = 76
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin
pdb|1S1Q|D Chain D, Tsg101(Uev) Domain In Complex With Ubiquitin
pdb|1G6J|A Chain A, Structure Of Recombinant Human Ubiquitin In Aot Reverse
Micelles
Length = 76
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 63 KLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLN 122
+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL N
Sbjct: 2 QIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 123 INNEDTLQMI 132
I E TL ++
Sbjct: 61 IQKESTLHLV 70
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex
pdb|1XD3|D Chain D, Crystal Structure Of Uchl3-Ubvme Complex
pdb|2IBI|B Chain B, Covalent Ubiquitin-Usp2 Complex
pdb|2J7Q|B Chain B, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
pdb|2J7Q|D Chain D, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
pdb|3C0R|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3C0R|D Chain D, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3BY4|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3I3T|B Chain B, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|D Chain D, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|F Chain F, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|H Chain H, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3IHP|C Chain C, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|D Chain D, Covalent Ubiquitin-Usp5 Complex
pdb|3IFW|B Chain B, Crystal Structure Of The S18y Variant Of Ubiquitin Carboxy
T Hydrolase L1 Bound To Ubiquitin Vinylmethylester.
pdb|3KVF|B Chain B, Crystal Structure Of The I93m Mutant Of Ubiquitin Carboxy
Te Hydrolase L1 Bound To Ubiquitin Vinylmethylester
pdb|3KW5|B Chain B, Crystal Structure Of Ubiquitin Carboxy Terminal Hydrolase
L1 Ubiquitin Vinylmethylester
pdb|3PT2|B Chain B, Structure Of A Viral Otu Domain Protease Bound To
Ubiquitin
pdb|3PRM|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRM|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PHW|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|D Chain D, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|F Chain F, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|H Chain H, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|4HXD|A Chain A, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
pdb|4HXD|C Chain C, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
Length = 75
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1CMX|D Chain D, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1NBF|C Chain C, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|D Chain D, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|2AYO|B Chain B, Structure Of Usp14 Bound To Ubquitin Aldehyde
pdb|2WDT|B Chain B, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|2WDT|D Chain D, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|3MHS|D Chain D, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|3O65|B Chain B, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|D Chain D, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|F Chain F, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|H Chain H, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3TMP|B Chain B, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|D Chain D, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|F Chain F, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|H Chain H, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|4DHJ|B Chain B, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|F Chain F, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|J Chain J, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|M Chain M, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|B Chain B, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
pdb|4IUM|B Chain B, Equine Arteritis Virus Papain-like Protease 2 (plp2)
Covalently Bound To Ubiquitin
pdb|3ZNH|B Chain B, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 76
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|F Chain F, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|3A1Q|A Chain A, Crystal Structure Of The Mouse Rap80 Uims In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A1Q|D Chain D, Crystal Structure Of The Mouse Rap80 Uims In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3JSV|B Chain B, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
pdb|3A9J|B Chain B, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A9K|B Chain B, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 77
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 91
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFV L+G++I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 20 IFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 79
Query: 275 NESIVNL 281
ES ++L
Sbjct: 80 KESTLHL 86
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLD 119
G M+++ T S K L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 16 GSMQIFVNTLSG-KHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 120 VLNINNEDTLQMI 132
NI E TL ++
Sbjct: 75 DYNIQKESTLHLV 87
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 134 VPKELQEIFVQTPTST-VKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLK 192
VP+ +IFV T + + LEV + T+ +VK ++ + IP + L G+QL++ +
Sbjct: 13 VPRGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGR 71
Query: 193 TLAYYDIKENEVLQII 208
TL+ Y+I++ L ++
Sbjct: 72 TLSDYNIQKESTLHLV 87
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 43 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 85
>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|1YIW|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|1YIW|C Chain C, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|2FCQ|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin With A Cubic Space Group
pdb|2FCQ|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin With A Cubic Space Group
Length = 76
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
++++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 LQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|MM Chain m, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 128
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTI+N+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG-IPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVKHSIF---VKLLNGRY 224
I++ L ++ ++ I +K L +Y
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKY 89
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 21 EEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target
Complexes
pdb|3RUL|B Chain B, New Strategy To Analyze Structures Of Glycopeptide-Target
Complexes
pdb|3RUL|C Chain C, New Strategy To Analyze Structures Of Glycopeptide-Target
Complexes
pdb|3RUL|D Chain D, New Strategy To Analyze Structures Of Glycopeptide-Target
Complexes
pdb|3VFK|A Chain A, The Structure Of Monodechloro-Teicoplanin In Complex With
Its Ligand, Using Ubiquitin As A Ligand Carrier
Length = 79
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
pdb|3VDZ|B Chain B, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
Length = 111
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 38 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 97
Query: 275 NESIVNL 281
ES ++L
Sbjct: 98 KESTLHL 104
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDV 120
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 35 AMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 93
Query: 121 LNINNEDTLQMI 132
NI E TL ++
Sbjct: 94 YNIQKESTLHLV 105
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 37 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 199 IKENEVLQIIRHVKHS 214
I++ L ++ ++
Sbjct: 96 IQKESTLHLVLRLRGG 111
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 61 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 103
>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|E Chain E, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|3A1Q|B Chain B, Crystal Structure Of The Mouse Rap80 Uims In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A1Q|E Chain E, Crystal Structure Of The Mouse Rap80 Uims In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3H7P|A Chain A, Crystal Structure Of K63-Linked Di-Ubiquitin
pdb|3JSV|A Chain A, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
pdb|3A9J|A Chain A, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A9K|A Chain A, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 76
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 RESTLHL 69
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQRESTLHLV 70
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I+ L ++ ++
Sbjct: 61 IQRESTLHLVLRLR 74
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLH 68
>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 76
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + G+ +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQKESTLH 68
>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant
Length = 77
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ LEV DT+ +VK K+ +IG PD QRL+F +QLED R L+ Y I
Sbjct: 4 IFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDYNIQ 63
Query: 275 NESIVNL 281
ES ++
Sbjct: 64 KESTLHC 70
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDV 120
M+++ K + KT L+ SDTIEN+K I+ + G P + + + GK +E TL
Sbjct: 1 AMQIFVKCLTG-KTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSD 59
Query: 121 LNINNEDTLQMI 132
NI E TL +
Sbjct: 60 YNIQKESTLHCV 71
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+ T T LEV + T+ +VK ++ +I P + L G+QL++ +TL+ Y+
Sbjct: 3 QIFVKCLTGKTNTLEVEPSDTIENVKAKIQD-KIGYPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 199 IKENEVLQIIRHVK 212
I++ L +R ++
Sbjct: 62 IQKESTLHCVRRLR 75
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 16 IHAKVEEEI--LEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++++I D L +AG+QLE+G T+ DY I S +H
Sbjct: 27 VKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 69
>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
pdb|2O6V|H Chain H, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
Length = 76
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 RESTLHL 69
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + G+ +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQRESTLHLV 70
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I+ L ++ ++
Sbjct: 61 IQRESTLHLVLRLR 74
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQRESTLH 68
>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position Two
pdb|3L10|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position One
Length = 169
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTI+N+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 21 EEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 128
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLE+ R LA Y I
Sbjct: 3 IFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ IP + L G+QL+ +TLA Y+
Sbjct: 2 QIFVKTLTGKTIALEVEASDTIENVKAKIQDKEG-IPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 199 IKENEVLQIIRHVKHSIF 216
I++ L ++ ++ +
Sbjct: 61 IQKESTLHLVLRLRGGVM 78
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH----NDSGVMKLYFKTP 69
+ AK++ E I D L +AG+QLE G T+ DY I S +H GVM+ +
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGVMEPTLEAL 85
Query: 70 SNEKTFELKANR 81
+ + +E K R
Sbjct: 86 AKKYNWEKKVCR 97
>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
pdb|2O6V|F Chain F, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
Length = 76
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 RESTLHL 69
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + G +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQRESTLHLV 70
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I+ L ++ ++
Sbjct: 61 IQRESTLHLVLRLR 74
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYNIQRESTLH 68
>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2.
pdb|4ADX|5 Chain 5, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 129
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I L+V DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ L+V + T+ +VK ++ IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLDVEASDTIENVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQII 208
I++ L ++
Sbjct: 61 IQKESTLHLV 70
>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin
Variant
Length = 76
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD Q+L+F R+QLED R L+ Y I
Sbjct: 5 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSDYNIH 64
Query: 275 NESIVNL 281
ES + L
Sbjct: 65 KESFLYL 71
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLD 119
G M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + K +E TL
Sbjct: 1 GSMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLS 59
Query: 120 VLNINNEDTLQMI 132
NI+ E L ++
Sbjct: 60 DYNIHKESFLYLV 72
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + +L +QL++ +TL+ Y+
Sbjct: 4 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQKLLFARKQLEDGRTLSDYN 62
Query: 199 IKENEVLQIIRHVK 212
I + L ++ ++
Sbjct: 63 IHKESFLYLVLRLR 76
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D +L +A +QLE+G T+ DY I S ++
Sbjct: 28 VKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSDYNIHKESFLY 70
>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin
Differentially Affect Its Recognition By Receptor
Proteins
Length = 76
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVN 280
ES ++
Sbjct: 63 KESTLH 68
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTI+N+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL +
Sbjct: 60 NIQKESTLHSV 70
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQII 208
I++ L +
Sbjct: 61 IQKESTLHSV 70
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 21 EEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHN 57
+E I D L +AG+QLE+G T+ DY I S +H+
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHS 69
>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A
pdb|2ZCB|B Chain B, Crystal Structure Of Ubiquitin P37aP38A
pdb|2ZCB|C Chain C, Crystal Structure Of Ubiquitin P37aP38A
Length = 76
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G A D QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGI + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + I ++ L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
Length = 91
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFV L G +I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 20 IFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 79
Query: 275 NESIVNL 281
ES ++L
Sbjct: 80 KESTLHL 86
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLD 119
G M+++ T + L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 16 GSMQIFVNTLTGTH-ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 120 VLNINNEDTLQMI 132
NI E TL ++
Sbjct: 75 DYNIQKESTLHLV 87
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 134 VPKELQEIFVQTPTST-VKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLK 192
VP+ +IFV T T T + LEV + T+ +VK ++ + IP + L G+QL++ +
Sbjct: 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGR 71
Query: 193 TLAYYDIKENEVLQII 208
TL+ Y+I++ L ++
Sbjct: 72 TLSDYNIQKESTLHLV 87
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 43 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 85
>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 83
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFV+ L GR I LEV DT+ +V+ ++ G PD QRL+F +QLED R LA Y I
Sbjct: 10 IFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYNIQ 69
Query: 275 NESIVNL 281
ES ++L
Sbjct: 70 RESTLHL 76
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ +T + +T L+ SDTI+N++ I+ REGIP + + + G+ +E TL
Sbjct: 8 MQIFVRTLTG-RTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADY 66
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 67 NIQRESTLHLV 77
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +V+ ++ R IP + L G QL++ +TLA Y+
Sbjct: 9 QIFVRTLTGRTITLEVESSDTIDNVRARIQD-REGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 199 IKENEVLQIIRHVK 212
I+ L ++ ++
Sbjct: 68 IQRESTLHLVLRLR 81
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ A+++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 33 VRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYNIQRESTLH 75
>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 85
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 40/63 (63%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
I VK L GR IILEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 6 IVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIH 65
Query: 275 NES 277
N S
Sbjct: 66 NHS 68
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M++ KT +T L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 4 MRIVVKTLMG-RTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 122 NINN 125
NI+N
Sbjct: 63 NIHN 66
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSV 54
+ AK++ E I D L +AG+QLE+G T+ DY I N+S
Sbjct: 29 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSA 69
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 149 TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDI 199
T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+I
Sbjct: 15 TIILEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYNI 64
>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN
Length = 114
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IF K L G+ I LEV DT+ +VK K+ + G PD QRL++ +QLED R L+ Y I
Sbjct: 12 IFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQ 71
Query: 275 NESIVNL 281
ES ++L
Sbjct: 72 RESTLHL 78
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLD 119
G +++ KT + KT L+ SDTI+N+K I+ +EGIP + + + GK +E TL
Sbjct: 8 GEFQIFAKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLS 66
Query: 120 VLNINNEDTLQMI 132
NI E TL ++
Sbjct: 67 DYNIQRESTLHLV 79
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IF +T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 11 QIFAKTLTGKTITLEVESSDTIDNVKSKIQD-KEGIPPDQQRLIWAGKQLEDGRTLSDYN 69
Query: 199 IKENEVLQIIRHVK 212
I+ L ++ ++
Sbjct: 70 IQRESTLHLVLRLR 83
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 21 EEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 42 KEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLH 77
>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin
Length = 76
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G P QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 16 IHAKVEEEILEDLP----ELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++++ E +P L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDK--EGIPPQQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics
And Thermodynamic Consequences
Length = 82
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G I LEV DT+ +VK K+ G PD Q L+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + T L+ SDTI+N+K I+ GIP + ++ + GK +E TL
Sbjct: 1 MQIFVKTLTG-ATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPT-STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T +T+ LEV + T+ +VK +++ IP + EL G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGATITLEVESSDTIDNVKSKIQAAP-GIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 24 ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
I D EL +AG+QLE+G T+ DY I S +H
Sbjct: 36 IPPDQQELIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67
Length = 76
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +Q ED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES +L
Sbjct: 63 KESTXHL 69
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E T ++
Sbjct: 60 NIQKESTXHLV 70
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+Q ++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 199 IKENEVLQII 208
I++ ++
Sbjct: 61 IQKESTXHLV 70
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+Q E+G T+ DY I S H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYNIQKESTXH 68
>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|1YJ1|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|1YJ1|C Chain C, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|2FCM|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCM|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCN|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Val35]ubiquitin With A Cubic Space Group
pdb|2FCN|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Val35]ubiquitin With A Cubic Space Group
Length = 76
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
++++ KT + KT L+ SDTIEN+K I+ +E IP + + + GK +E TL
Sbjct: 1 LQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|D Chain D, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 85
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 40/65 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 6 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 65
Query: 275 NESIV 279
S +
Sbjct: 66 KWSTL 70
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 4 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 122 NINNEDTL 129
NI TL
Sbjct: 63 NIQKWSTL 70
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 5 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 199 IKENEVL 205
I++ L
Sbjct: 64 IQKWSTL 70
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVI 55
+ AK++ E I D L +AG+QLE+G T+ DY I S +
Sbjct: 29 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTL 70
>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCS|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
Length = 76
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV DT+ +VK K+ + PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTLHL 69
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
++++ KT + KT L+ SDTIEN+K I+ +E IP + + + GK +E TL
Sbjct: 1 LQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKESTLHLV 70
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E+I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant
Of Ubiquitin, 1d7
Length = 76
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
+F+K L G+ + +EV DTV + K K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 VFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTIHL 69
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT ++ SDT+EN K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQVFLKTLTG-KTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
NI E T+ ++
Sbjct: 60 NIQKESTIHLV 70
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 18 AKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
AK++ E I D L +AG+QLE+G T+ DY I S IH
Sbjct: 28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTIH 68
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
++F++T T TV +EV + TV + K ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QVFLKTLTGKTVTIEVEPSDTVENFKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
I++ + ++ ++
Sbjct: 61 IQKESTIHLVLRLR 74
>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBR|B Chain B, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBR|C Chain C, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
Length = 81
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQ-----APDSQRLVFKRQQLEDDRNLA 269
IFVK L G+ I LEV DT+ +VK K+ + G+ PD QRL+F +QLED R L+
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRTLS 62
Query: 270 SYKIVNESIVNL 281
Y I ES ++L
Sbjct: 63 DYNIQKESTLHL 74
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREG-----IPVHEYDIYYGGKLIESYI 116
M+++ KT + KT L+ SDTIEN+K I+ +EG IP + + + GK +E
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGR 59
Query: 117 TLDVLNINNEDTLQMI 132
TL NI E TL ++
Sbjct: 60 TLSDYNIQKESTLHLV 75
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVES----MRICIPSEDCELFRGGEQLQNLKTL 194
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRTL 61
Query: 195 AYYDIKENEVLQIIRHVK 212
+ Y+I++ L ++ ++
Sbjct: 62 SDYNIQKESTLHLVLRLR 79
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 24 ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
I D L +AG+QLE+G T+ DY I S +H
Sbjct: 41 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 73
>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein
Length = 82
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I ++V DTV VK K++ + G PD QRL+F +QLED ++ Y +
Sbjct: 8 IFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSDYNVQ 67
Query: 275 NESIVNL 281
ES ++L
Sbjct: 68 KESTLHL 74
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLD 119
G M+++ KT + KT + + +DT+ +K I +EGIP + + +GGK +E +
Sbjct: 4 GSMQIFVKTLTG-KTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMS 62
Query: 120 VLNINNEDTLQMI 132
N+ E TL ++
Sbjct: 63 DYNVQKESTLHLV 75
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 135 PKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKT 193
P +IFV+T T T+ ++V A TV VK + + IP + L GG+QL++
Sbjct: 2 PLGSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYD-KEGIPPDQQRLIFGGKQLEDSNA 60
Query: 194 LAYYDIKENEVLQIIRHVKHSI 215
++ Y++++ L ++ ++ +
Sbjct: 61 MSDYNVQKESTLHLVLRLRGGV 82
>pdb|3H7S|A Chain A, Crystal Structures Of K63-Linked Di- And Tri-Ubiquitin
Reveal A Highly Extended Chain Architecture
pdb|3H7S|B Chain B, Crystal Structures Of K63-Linked Di- And Tri-Ubiquitin
Reveal A Highly Extended Chain Architecture
Length = 76
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINN-EDTLQMI 132
NI E TL ++
Sbjct: 60 NIQKRESTLHLV 71
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENE 203
I++ E
Sbjct: 61 IQKRE 65
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNN-SVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKRESTLH 69
>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural
Specificity
Length = 76
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
+FVK L G+ + +E+ DTV ++K K+ + G PD QRL+F +QLED R L+ Y +
Sbjct: 3 LFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNLQ 62
Query: 275 NESIVNL 281
ES ++L
Sbjct: 63 KESTIHL 69
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M+L+ KT + KT ++ SDT+EN+K I+ +EGIP + + + GK +E TL
Sbjct: 1 MQLFVKTLTG-KTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 122 NINNEDTLQMI 132
N+ E T+ ++
Sbjct: 60 NLQKESTIHLV 70
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY + S IH
Sbjct: 26 LKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNLQKESTIH 68
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
++FV+T T T+ +E+ + TV ++K ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 2 QLFVKTLTGKTLTVELEPSDTVENLKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IKENEVLQIIRHVK 212
+++ + ++ ++
Sbjct: 61 LQKESTIHLVLRLR 74
>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|B Chain B, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|C Chain C, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|D Chain D, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
Length = 83
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 215 IFVK-------LLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRN 267
IFVK L+ G+ I LEV DT+ +VK K+ + G PD QRL+F +QLED R
Sbjct: 3 IFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 62
Query: 268 LASYKIVNESIVNL 281
L+ Y I ES ++L
Sbjct: 63 LSDYNIQKESTLHL 76
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 62 MKLYFKTPS------NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY 115
M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E
Sbjct: 1 MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 116 ITLDVLNINNEDTLQMI 132
TL NI E TL ++
Sbjct: 61 RTLSDYNIQKESTLHLV 77
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 33 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 75
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 9/81 (11%)
Query: 140 EIFVQTPTS--------TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNL 191
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++
Sbjct: 2 QIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDG 60
Query: 192 KTLAYYDIKENEVLQIIRHVK 212
+TL+ Y+I++ L ++ ++
Sbjct: 61 RTLSDYNIQKESTLHLVLRLR 81
>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica
To 2.15 Angstrom
pdb|4GSW|B Chain B, Crystal Structure Of Ubiquitin From Entamoeba Histolytica
To 2.15 Angstrom
pdb|4GU2|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica
To 1.35 Angstrom
Length = 80
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK L G+ I LEV D++ +K K+ + G PD QRL+F +QLE+ + L+ Y I
Sbjct: 6 IFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDYNIQ 65
Query: 275 NESIVNL 281
ES ++L
Sbjct: 66 KESTLHL 72
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITL 118
S M+++ KT + KT L+ +D+I+ IK I+ +EGIP + + + GK +E TL
Sbjct: 1 SNAMQIFVKTLTG-KTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTL 59
Query: 119 DVLNINNEDTLQMI 132
NI E TL ++
Sbjct: 60 SDYNIQKESTLHLV 73
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVEEE--ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
I AK++E+ I D L +AG+QLE G T+ DY I S +H
Sbjct: 29 IKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDYNIQKESTLH 71
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+T T T+ LEV ++ +K ++ + IP + L G+QL+ KTL+ Y+
Sbjct: 5 QIFVKTLTGKTITLEVEPNDSIDAIKAKIQE-KEGIPPDQQRLIFAGKQLEEGKTLSDYN 63
Query: 199 IKENEVLQIIRHVK 212
I++ L ++ ++
Sbjct: 64 IQKESTLHLVLRLR 77
>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of
Ubiquitin
Length = 88
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
+F+K L G+ +E+ DT+ ++K K+ + G PD QRL+F +QLED R L+ Y I
Sbjct: 12 LFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 71
Query: 275 NESIVNL 281
ES ++L
Sbjct: 72 KESTLHL 78
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
++L+ KT + KTF ++ SDTIEN+K I+ +EGIP + + + GK +E TL
Sbjct: 10 LQLFIKTLTG-KTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 122 NINNEDTLQMI 132
NI E TL ++
Sbjct: 69 NIQKESTLHLV 79
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 35 LKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 77
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
++F++T T T +E+ + T+ ++K ++ + IP + L G+QL++ +TL+ Y+
Sbjct: 11 QLFIKTLTGKTFTVEMEPSDTIENLKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYN 69
Query: 199 IKENEVLQIIRHVKHS 214
I++ L ++ ++
Sbjct: 70 IQKESTLHLVLRLRGG 85
>pdb|4HK2|A Chain A, U7ub25.2540
pdb|4HK2|B Chain B, U7ub25.2540
pdb|4HK2|C Chain C, U7ub25.2540
pdb|4HK2|D Chain D, U7ub25.2540
Length = 78
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
IFVK G+ LEV DT+ +VK K+ ++G PD Q L+F ++LED R L+ Y I
Sbjct: 5 IFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSDYNIQ 64
Query: 275 NESIV 279
ES +
Sbjct: 65 KESTL 69
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLD 119
G M+++ K + KT+ L+ SDTIEN+K I+ + GIP + + + GK +E TL
Sbjct: 1 GSMQIFVKFRTG-KTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLS 59
Query: 120 VLNINNEDTLQMI 132
NI E TL+ +
Sbjct: 60 DYNIQKESTLRGV 72
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198
+IFV+ T T LEV + T+ +VK ++ ++ IP + L G++L++ +TL+ Y+
Sbjct: 4 QIFVKFRTGKTYTLEVEPSDTIENVKAKIQD-KLGIPPDQQWLIFAGKRLEDGRTLSDYN 62
Query: 199 IKENEVLQIIRHVKHS 214
I++ L+ +R ++
Sbjct: 63 IQKESTLRGVRRLRGG 78
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 16 IHAKVEEE--ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKL 64
+ AK++++ I D L +AG++LE+G T+ DY I S + GV +L
Sbjct: 28 VKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSDYNIQKESTLR---GVRRL 75
>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant
Of Ubiquitin
pdb|2GBM|B Chain B, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant
Of Ubiquitin
pdb|2GBM|C Chain C, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant
Of Ubiquitin
pdb|2GBM|D Chain D, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant
Of Ubiquitin
pdb|2GBN|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant
Of Ubiquitin
Length = 84
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKL--------FREIGQAPDSQRLVFKRQQLEDDR 266
IFVK L G+ I LEV DT+ +VK K+ G PD QRL+F +QLED R
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLEDGR 62
Query: 267 NLASYKIVNESIVNL 281
L+ Y I ES ++L
Sbjct: 63 TLSDYNIQKESTLHL 77
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVRE--------GIPVHEYDIYYGGKLIE 113
M+++ KT + KT L+ SDTIEN+K I+ +E GIP + + + GK +E
Sbjct: 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLE 59
Query: 114 SYITLDVLNINNEDTLQMI 132
TL NI E TL ++
Sbjct: 60 DGRTLSDYNIQKESTLHLV 78
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVES-------MRICIPSEDCELFRGGEQLQNL 191
+IFV+T T T+ LEV + T+ +VK ++ IP + L G+QL++
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLEDG 61
Query: 192 KTLAYYDIKENEVLQIIRHVK 212
+TL+ Y+I++ L ++ ++
Sbjct: 62 RTLSDYNIQKESTLHLVLRLR 82
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 24 ILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
I D L +AG+QLE+G T+ DY I S +H
Sbjct: 44 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 76
>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant
Of Ubiquitin.
pdb|2GBJ|B Chain B, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant
Of Ubiquitin
Length = 84
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 215 IFVKLLNG--------RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDR 266
IFVK L G + I LEV DT+ +VK K+ + G PD QRL+F +QLED R
Sbjct: 3 IFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 62
Query: 267 NLASYKIVNESIVNL 281
L+ Y I ES ++L
Sbjct: 63 TLSDYNIQKESTLHL 77
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132
KT L+ SDTIEN+K I+ +EGIP + + + GK +E TL NI E TL ++
Sbjct: 19 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 78
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 IHAKVE--EEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIH 56
+ AK++ E I D L +AG+QLE+G T+ DY I S +H
Sbjct: 34 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 76
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 140 EIFVQTPT---------STVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQN 190
+IFV+T T T+ LEV + T+ +VK ++ + IP + L G+QL++
Sbjct: 2 QIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLED 60
Query: 191 LKTLAYYDIKENEVLQIIRHVK 212
+TL+ Y+I++ L ++ ++
Sbjct: 61 GRTLSDYNIQKESTLHLVLRLR 82
>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of
Human Ubiquitin
pdb|1GJZ|B Chain B, Solution Structure Of A Dimeric N-Terminal Fragment Of
Human Ubiquitin
Length = 53
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLE 263
IFVK L G+ I LEV DT+ +VK K+ + G PD QRL+F +QLE
Sbjct: 5 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIE 113
G M+++ KT + KT L+ SDTIEN+K I+ +EGIP + + + GK +E
Sbjct: 1 GSMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53
>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
pdb|2NVU|J Chain J, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 81
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
I VK L G+ I +++ D V +K+++ + G P QRL++ +Q+ D++ A YKI+
Sbjct: 8 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 67
Query: 275 NESIVNL 281
S+++L
Sbjct: 68 GGSVLHL 74
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 57 NDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK 110
G M + KT + K E+ +D +E IK +E +EGIP + + Y GK
Sbjct: 1 GSGGSMLIKVKTLTG-KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK 53
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 15 RIHAKVEEEILEDLP----ELFYAGQQLENGLTVIDYGIPNNSVIH 56
RI +VEE+ E +P L Y+G+Q+ + T DY I SV+H
Sbjct: 30 RIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 73
>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 88
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
I VK L G+ I +++ D V +K+++ + G P QRL++ +Q+ D++ A YKI+
Sbjct: 15 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 74
Query: 275 NESIVNL 281
S+++L
Sbjct: 75 GGSVLHL 81
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 57 NDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK 110
G M + KT + K E+ +D +E IK +E +EGIP + + Y GK
Sbjct: 8 GSGGSMLIKVKTLTG-KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK 60
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 15 RIHAKVEEEILEDLP----ELFYAGQQLENGLTVIDYGIPNNSVIH 56
RI +VEE+ E +P L Y+G+Q+ + T DY I SV+H
Sbjct: 37 RIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 80
>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex
Length = 77
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
I VK L G+ I +++ D V +K+++ + G P QRL++ +Q+ D++ A YKI+
Sbjct: 4 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 63
Query: 275 NESIVNL 281
S+++L
Sbjct: 64 GGSVLHL 70
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 15 RIHAKVEEEILEDLP----ELFYAGQQLENGLTVIDYGIPNNSVIH 56
RI +VEE+ E +P L Y+G+Q+ + T DY I SV+H
Sbjct: 26 RIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 69
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK 110
K E+ +D +E IK +E +EGIP + + Y GK
Sbjct: 12 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK 49
>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Nedd8
Length = 78
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
I VK L G+ I +++ D V +K+++ + G P QRL++ +Q+ D++ A YKI+
Sbjct: 5 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 64
Query: 275 NESIVNL 281
S+++L
Sbjct: 65 GGSVLHL 71
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 15 RIHAKVEEEILEDLP----ELFYAGQQLENGLTVIDYGIPNNSVIH 56
RI +VEE+ E +P L Y+G+Q+ + T DY I SV+H
Sbjct: 27 RIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 70
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK 110
K E+ +D +E IK +E +EGIP + + Y GK
Sbjct: 13 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK 50
>pdb|1NDD|B Chain B, Structure Of Nedd8
pdb|1NDD|A Chain A, Structure Of Nedd8
pdb|1NDD|C Chain C, Structure Of Nedd8
pdb|1NDD|D Chain D, Structure Of Nedd8
pdb|1R4M|I Chain I, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|J Chain J, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|K Chain K, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|L Chain L, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|I Chain I, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|J Chain J, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|K Chain K, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|L Chain L, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1XT9|B Chain B, Crystal Structure Of Den1 In Complex With Nedd8
pdb|2KO3|A Chain A, Nedd8 Solution Structure
Length = 76
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
I VK L G+ I +++ D V +K+++ + G P QRL++ +Q+ D++ A YKI+
Sbjct: 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
Query: 275 NESIVNL 281
S+++L
Sbjct: 63 GGSVLHL 69
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 15 RIHAKVEEEILEDLP----ELFYAGQQLENGLTVIDYGIPNNSVIH 56
RI +VEE+ E +P L Y+G+Q+ + T DY I SV+H
Sbjct: 25 RIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 68
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK 110
K E+ +D +E IK +E +EGIP + + Y GK
Sbjct: 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK 48
>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|J Chain J, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 82
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
I VK L G+ I +++ D V +K+++ + G P QRL++ +Q+ D++ A YKI+
Sbjct: 9 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 68
Query: 275 NESIVNL 281
S+++L
Sbjct: 69 GGSVLHL 75
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 15 RIHAKVEEEILEDLP----ELFYAGQQLENGLTVIDYGIPNNSVIH 56
RI +VEE+ E +P L Y+G+Q+ + T DY I SV+H
Sbjct: 31 RIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 74
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK 110
K E+ +D +E IK +E +EGIP + + Y GK
Sbjct: 17 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK 54
>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
pdb|4F8C|D Chain D, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
pdb|4FBJ|B Chain B, Structure Of The Cif:nedd8 Complex - Photorhabdus
Luminescens Cycle Inhibiting Factor In Complex With
Human Nedd8
Length = 88
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
I VK L G+ I +++ D V +K+++ + G P QRL++ +Q+ D++ A YKI+
Sbjct: 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
Query: 275 NESIVNL 281
S+++L
Sbjct: 63 GGSVLHL 69
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 15 RIHAKVEEEILEDLP----ELFYAGQQLENGLTVIDYGIPNNSVIH 56
RI +VEE+ E +P L Y+G+Q+ + T DY I SV+H
Sbjct: 25 RIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 68
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK 110
K E+ +D +E IK +E +EGIP + + Y GK
Sbjct: 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK 48
>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBR|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 88
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
I VK L G+ I +++ D V +K+++ + G P QRL++ +Q+ D++ A YKI+
Sbjct: 15 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 74
Query: 275 NESIVNL 281
S+++L
Sbjct: 75 GGSVLHL 81
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 15 RIHAKVEEEILEDLP----ELFYAGQQLENGLTVIDYGIPNNSVIH 56
RI +VEE+ E +P L Y+G+Q+ + T DY I SV+H
Sbjct: 37 RIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 80
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 57 NDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK 110
G M + KT + K E+ +D +E IK +E +EGIP + + Y GK
Sbjct: 8 GSGGSMLIKVKTLTG-KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK 60
>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|B Chain B, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 81
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
I VK L G+ I +++ D V +K+++ + G P QRL++ +Q D++ A YKI
Sbjct: 8 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAADYKIX 67
Query: 275 NESIVNL 281
S+++L
Sbjct: 68 GGSVLHL 74
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 15 RIHAKVEEEILEDLP----ELFYAGQQLENGLTVIDYGIPNNSVIH 56
RI +VEE+ E +P L Y+G+Q + T DY I SV+H
Sbjct: 30 RIKERVEEK--EGIPPQQQRLIYSGKQXNDEKTAADYKIXGGSVLH 73
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK 110
K E+ +D +E IK +E +EGIP + + Y GK
Sbjct: 16 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK 53
>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1
Length = 76
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
I VK L G+ I +++ DT+ +K+++ + G P QRL++ +QL DD+ Y I
Sbjct: 3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62
Query: 275 NESIVNL 281
S+++L
Sbjct: 63 GGSVLHL 69
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 15 RIHAKVEEEILEDLP----ELFYAGQQLENGLTVIDYGIPNNSVIH 56
RI +VEE+ E +P L YAG+QL + T DY I SV+H
Sbjct: 25 RIKERVEEK--EGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLH 68
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132
K E+ +DTI+ IK +E +EGIP + + Y GK + T NI L ++
Sbjct: 11 KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70
>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like
Domain In Human Ubiquitin-Like Protein 4a (Gdx)
Length = 81
Score = 35.0 bits (79), Expect = 0.052, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 217 VKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNE 276
VK L GR L+V + + V +K + ++ QRL+FK + L D + L+ Y I
Sbjct: 12 VKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPN 71
Query: 277 SIVNL 281
S +NL
Sbjct: 72 SKLNL 76
>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like
Domain In Human Np95ICBP90-Like Ring Finger Protein
(Nirf)
Length = 89
Score = 34.7 bits (78), Expect = 0.062, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 31 LFYAGQQLENGLTVIDYGIPNNSVIH 56
LFY G+QLENG T+ DY + N +I
Sbjct: 52 LFYRGKQLENGYTLFDYDVGLNDIIQ 77
Score = 31.2 bits (69), Expect = 0.60, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 145 TPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCE-LFRGGEQLQNLKTLAYYDIKENE 203
+ T T++ +V R T+ ++++ V ++ P +C+ LF G+QL+N TL YD+ N+
Sbjct: 18 SKTCTIE-DVSRKATIEELRERVWALFDVRP--ECQRLFYRGKQLENGYTLFDYDVGLND 74
Query: 204 VLQII 208
++Q++
Sbjct: 75 IIQLL 79
Score = 31.2 bits (69), Expect = 0.70, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 226 ILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
I +V++ T+ +++++++ P+ QRL ++ +QLE+ L Y + I+ L
Sbjct: 23 IEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQL 78
>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In
Sf3a1
Length = 86
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIV 279
LNG+ ++ + D V +K K+ G Q+L ++ ++D +LA Y + N +++
Sbjct: 19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 280 NLT 282
+L
Sbjct: 79 HLA 81
>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 81
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 10/62 (16%), Positives = 35/62 (56%)
Query: 75 FELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV 134
F ++ + +I +K ++ R+G+P + + + GK +++++T+ ++ + + ++
Sbjct: 18 FPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQNCDLEQQSIVHIVQR 77
Query: 135 PK 136
P+
Sbjct: 78 PQ 79
>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 101
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 46 DYGIPNNSVIHNDSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDI 105
DY IP ++ G M L S + +E+ T+ K I GIPV +
Sbjct: 12 DYDIPTTENLYF-QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRL 70
Query: 106 YYGGKLIESYITLDVLNINNEDTLQMI 132
Y GK+++ T++ +I + ++ ++
Sbjct: 71 IYSGKILKDDQTVESYHIQDGHSVHLV 97
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 194 LAYYDIKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQ 253
++ YDI E L + +I +K ++ + VA TV K+ + + G +Q
Sbjct: 10 MSDYDIPTTENLYFQGAMSLNIHIKSGQDKWEV-NVAPESTVLQFKEAINKANGIPVANQ 68
Query: 254 RLVFKRQQLEDDRNLASYKIVNESIVNL 281
RL++ + L+DD+ + SY I + V+L
Sbjct: 69 RLIYSGKILKDDQTVESYHIQDGHSVHL 96
>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of
Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59
Oasl)
Length = 87
Score = 31.6 bits (70), Expect = 0.58, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITL 118
S ++++ K P ++ N + I +K IE ++G+P + + + G++++ ++ L
Sbjct: 5 SSGIQVFVKNPDG-GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGL 63
Query: 119 DVLNINNEDTL 129
+ I + DTL
Sbjct: 64 GIYGIQDSDTL 74
>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger
Protein Np95
pdb|2FAZ|B Chain B, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger
Protein Np95
Length = 78
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 28 LPELFYAGQQLENGLTVIDYGIPNNSVI 55
L LFY G+Q+E+G T+ DY + N I
Sbjct: 44 LQRLFYRGKQMEDGHTLFDYEVRLNDTI 71
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 215 IFVKLLNGR--YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYK 272
I V+ ++GR + + +++ V +++ K+ P QRL ++ +Q+ED L Y+
Sbjct: 5 IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYE 64
Query: 273 I-VNESI 278
+ +N++I
Sbjct: 65 VRLNDTI 71
>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine
Parkin
pdb|1MG8|A Chain A, Nmr Structure Of Ubiquitin-Like Domain In Murine Parkin
Length = 78
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 10/62 (16%), Positives = 34/62 (54%)
Query: 75 FELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV 134
F ++ + +I +K ++ R+G+P + + + GK + +++T+ ++ + + ++
Sbjct: 15 FPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 74
Query: 135 PK 136
P+
Sbjct: 75 PR 76
>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human
Dc- Ubp From Dendritic Cells
Length = 106
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 217 VKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNE 276
++L G+ + L V DTV +K +L G P SQR F + L D KI +
Sbjct: 28 LRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKD 87
Query: 277 SIVNL 281
+V +
Sbjct: 88 YVVQV 92
>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120
Length = 115
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIV 279
LNG+ ++ + D V +K K+ G Q+L ++ ++D +LA Y + + +++
Sbjct: 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 280 NLT 282
+L
Sbjct: 103 HLA 105
>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q
Mutant
Length = 76
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/62 (14%), Positives = 34/62 (54%)
Query: 75 FELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV 134
F ++ + +I +K ++ ++G+P + + + GK + +++T+ ++ + + ++
Sbjct: 13 FPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72
Query: 135 PK 136
P+
Sbjct: 73 PR 74
>pdb|1V5O|A Chain A, Solution Structure Of The Ubiquitin-Like Domain From Mouse
Hypothetical 1700011n24rik Protein
Length = 102
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 71 NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYY 107
E TF L+ N + N + + E+ G+P E I Y
Sbjct: 20 TEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY 56
>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3
(Bat3) From Homo Sapiens At 1.80 A Resolution
pdb|4DWF|B Chain B, Crystal Structure Of A Hla-B Associated Transcript 3
(Bat3) From Homo Sapiens At 1.80 A Resolution
Length = 90
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
+ VK L+ + V V++ K+ + + + QRL+++ + L+DD+ L Y +
Sbjct: 8 VLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVG 67
Query: 275 NESI 278
+ I
Sbjct: 68 GKVI 71
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 185 GEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVK----LLNGRY------IILEVAKFDT 234
G +L+NLKT ++ + V I HV ++ FVK L + Y I +
Sbjct: 222 GVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIYTNIPMLFA 281
Query: 235 VRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIV 279
DV D ++R++ + + R + +R LA+ ++ E +
Sbjct: 282 AGDVSDYIYRQLATSVGAG----TRAAMMTERQLAALEVEGEEVT 322
>pdb|3AP3|A Chain A, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|B Chain B, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|C Chain C, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|D Chain D, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
Length = 355
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 46 DYGIPNNSVIHNDSGVMKLYFKTPSNEKTFELKANRSDTIENI 88
+YG P+ VI+N V+K +KTP+N K + + N++ T ++
Sbjct: 311 NYGNPDPFVINNTQRVLKGDYKTPANLKGY-FQVNQNSTSSHL 352
>pdb|3RTL|A Chain A, Staphylococcus Aureus Heme-Bound Isdb-N2
pdb|3RTL|B Chain B, Staphylococcus Aureus Heme-Bound Isdb-N2
pdb|3RTL|C Chain C, Staphylococcus Aureus Heme-Bound Isdb-N2
pdb|3RTL|D Chain D, Staphylococcus Aureus Heme-Bound Isdb-N2
Length = 121
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 188 LQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNG-RYIILEVAKFDTVRD 237
LQ+ K + Y ++ NE + + VKH I +LNG +Y+++E D +D
Sbjct: 7 LQDTKYVVYESVENNESM-MDTFVKHPIKTGMLNGKKYMVMETTNDDYWKD 56
>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6
pdb|4EEW|B Chain B, Crystal Structure Of The Ubl Domain Of Bag6
Length = 88
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273
+ VK L+ + V V++ K+ + + + QRL+++ + L+DD+ L Y +
Sbjct: 20 VLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV 78
>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain
In The Human Bat3 Protein
Length = 86
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV 274
+ VK L+ + V V++ K+ + + + QRL+++ + L+DD+ L Y +
Sbjct: 10 VLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVG 69
Query: 275 NESI 278
+ I
Sbjct: 70 GKVI 73
>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|T Chain T, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|U Chain U, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWF|A Chain A, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
Cerevisiae
pdb|2BWF|B Chain B, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
Cerevisiae
Length = 77
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121
M L S + +E+ T+ K I GIPV + Y GK+++ T++
Sbjct: 3 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62
Query: 122 NINNEDTLQMI 132
+I + ++ ++
Sbjct: 63 HIQDGHSVHLV 73
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 227 LEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281
+ VA TV K+ + + G +QRL++ + L+DD+ + SY I + V+L
Sbjct: 18 VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHL 72
>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human
Parkin
Length = 81
Score = 27.7 bits (60), Expect = 7.0, Method: Composition-based stats.
Identities = 10/61 (16%), Positives = 32/61 (52%)
Query: 75 FELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV 134
F ++ + +I +K ++ R+G+P + + + GK + + T+ +++ + + ++
Sbjct: 18 FPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 77
Query: 135 P 135
P
Sbjct: 78 P 78
>pdb|1X1M|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain
In Mouse Ubiquitin-Like Protein Sb132
Length = 107
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 16 IHAKVEEEILE-DLPELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSN 71
I K++E + + +L +L Y G++L++ T+ YGI S +H V++ + PS+
Sbjct: 54 IAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVH----VLRKSWSGPSS 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,829,199
Number of Sequences: 62578
Number of extensions: 324522
Number of successful extensions: 1377
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 366
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)