Query 023198
Match_columns 286
No_of_seqs 269 out of 2318
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 09:10:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 2E-20 4.2E-25 141.2 11.4 95 43-138 6-103 (103)
2 cd01807 GDX_N ubiquitin-like d 99.8 2.3E-19 4.9E-24 127.9 8.7 74 62-136 1-74 (74)
3 cd01802 AN1_N ubiquitin-like d 99.8 4.3E-19 9.3E-24 133.9 10.1 89 196-284 9-99 (103)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 2.8E-19 6.1E-24 127.4 8.6 74 62-138 1-74 (74)
5 cd01807 GDX_N ubiquitin-like d 99.8 3.7E-19 8.1E-24 126.8 7.9 73 213-285 1-73 (74)
6 PTZ00044 ubiquitin; Provisiona 99.8 1.4E-18 3.1E-23 124.4 9.2 76 62-138 1-76 (76)
7 KOG0003 Ubiquitin/60s ribosoma 99.8 2.9E-20 6.3E-25 135.5 0.0 76 62-138 1-76 (128)
8 cd01810 ISG15_repeat2 ISG15 ub 99.8 2E-18 4.4E-23 123.0 8.2 74 64-138 1-74 (74)
9 KOG0004 Ubiquitin/40S ribosoma 99.8 3.6E-19 7.9E-24 139.4 3.9 76 62-138 1-76 (156)
10 cd01797 NIRF_N amino-terminal 99.8 3.1E-18 6.8E-23 122.9 8.4 74 62-136 1-76 (78)
11 cd01793 Fubi Fubi ubiquitin-li 99.8 3E-18 6.4E-23 122.1 7.7 70 213-284 1-70 (74)
12 cd01798 parkin_N amino-termina 99.7 3.3E-18 7.1E-23 120.6 7.2 70 215-284 1-70 (70)
13 cd01797 NIRF_N amino-terminal 99.7 4.2E-18 9.2E-23 122.2 7.6 73 213-285 1-75 (78)
14 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 6.3E-18 1.4E-22 119.5 7.4 70 213-282 2-71 (73)
15 KOG0005 Ubiquitin-like protein 99.7 1.7E-18 3.7E-23 112.7 4.1 70 62-132 1-70 (70)
16 cd01794 DC_UbP_C dendritic cel 99.7 6.3E-18 1.4E-22 118.8 7.0 68 216-283 2-69 (70)
17 cd01803 Ubiquitin Ubiquitin. U 99.7 1.5E-17 3.2E-22 119.0 9.0 76 62-138 1-76 (76)
18 cd01810 ISG15_repeat2 ISG15 ub 99.7 7.2E-18 1.6E-22 120.1 7.1 70 215-284 1-70 (74)
19 cd01806 Nedd8 Nebb8-like ubiq 99.7 2.3E-17 4.9E-22 118.0 9.2 76 62-138 1-76 (76)
20 PTZ00044 ubiquitin; Provisiona 99.7 1.2E-17 2.6E-22 119.6 7.8 72 213-284 1-72 (76)
21 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 2E-17 4.3E-22 117.0 7.7 71 62-133 2-72 (73)
22 cd01798 parkin_N amino-termina 99.7 1.9E-17 4.2E-22 116.6 7.7 70 64-134 1-70 (70)
23 cd01804 midnolin_N Ubiquitin-l 99.7 2.9E-17 6.2E-22 118.1 8.6 77 61-139 1-77 (78)
24 cd01794 DC_UbP_C dendritic cel 99.7 2.4E-17 5.3E-22 115.8 7.5 68 65-133 2-69 (70)
25 cd01809 Scythe_N Ubiquitin-lik 99.7 4.9E-17 1.1E-21 115.1 8.2 72 213-284 1-72 (72)
26 KOG0005 Ubiquitin-like protein 99.7 1E-17 2.2E-22 109.1 4.1 70 213-282 1-70 (70)
27 cd01805 RAD23_N Ubiquitin-like 99.7 1.1E-16 2.3E-21 114.9 9.2 73 62-135 1-75 (77)
28 cd01805 RAD23_N Ubiquitin-like 99.7 8.8E-17 1.9E-21 115.4 8.1 72 213-284 1-74 (77)
29 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.1E-16 2.3E-21 114.5 8.1 72 213-284 1-72 (76)
30 cd01803 Ubiquitin Ubiquitin. U 99.7 1.1E-16 2.4E-21 114.4 7.7 72 213-284 1-72 (76)
31 cd01809 Scythe_N Ubiquitin-lik 99.7 1.8E-16 3.9E-21 112.1 8.6 72 62-134 1-72 (72)
32 cd01808 hPLIC_N Ubiquitin-like 99.7 1.2E-16 2.5E-21 112.9 7.5 71 213-284 1-71 (71)
33 cd01804 midnolin_N Ubiquitin-l 99.7 1.2E-16 2.6E-21 114.9 7.7 70 213-283 2-71 (78)
34 cd01792 ISG15_repeat1 ISG15 ub 99.7 1.4E-16 3E-21 115.2 7.0 72 213-284 3-76 (80)
35 KOG0003 Ubiquitin/60s ribosoma 99.7 7E-18 1.5E-22 123.1 0.1 72 213-284 1-72 (128)
36 cd01796 DDI1_N DNA damage indu 99.7 2.1E-16 4.5E-21 111.6 6.8 68 215-282 1-70 (71)
37 PF00240 ubiquitin: Ubiquitin 99.7 4E-16 8.6E-21 109.5 8.2 68 218-285 1-68 (69)
38 cd01792 ISG15_repeat1 ISG15 ub 99.7 3.2E-16 7E-21 113.2 7.4 73 62-135 3-77 (80)
39 cd01808 hPLIC_N Ubiquitin-like 99.7 5.5E-16 1.2E-20 109.5 8.2 71 62-134 1-71 (71)
40 PF00240 ubiquitin: Ubiquitin 99.7 7.5E-16 1.6E-20 108.1 8.8 69 67-136 1-69 (69)
41 KOG0004 Ubiquitin/40S ribosoma 99.6 6.4E-17 1.4E-21 126.8 3.1 72 213-284 1-72 (156)
42 cd01796 DDI1_N DNA damage indu 99.6 6.9E-16 1.5E-20 108.9 7.4 68 64-132 1-70 (71)
43 cd01800 SF3a120_C Ubiquitin-li 99.6 8E-16 1.7E-20 110.1 7.7 67 72-138 7-73 (76)
44 cd01790 Herp_N Homocysteine-re 99.6 1.7E-15 3.8E-20 107.8 6.8 71 213-283 2-78 (79)
45 cd01812 BAG1_N Ubiquitin-like 99.6 2.9E-15 6.2E-20 105.7 7.5 69 213-282 1-69 (71)
46 cd01800 SF3a120_C Ubiquitin-li 99.6 2.2E-15 4.8E-20 107.8 6.9 65 220-284 5-69 (76)
47 cd01813 UBP_N UBP ubiquitin pr 99.6 4.6E-15 1E-19 105.3 7.7 69 213-282 1-72 (74)
48 cd01815 BMSC_UbP_N Ubiquitin-l 99.6 1.2E-15 2.6E-20 107.1 3.8 54 5-58 19-73 (75)
49 cd01763 Sumo Small ubiquitin-r 99.6 1.5E-14 3.3E-19 106.1 9.8 79 59-138 9-87 (87)
50 cd01790 Herp_N Homocysteine-re 99.6 9E-15 1.9E-19 104.1 7.4 71 62-133 2-78 (79)
51 cd01813 UBP_N UBP ubiquitin pr 99.5 2.7E-14 5.9E-19 101.4 7.7 69 62-132 1-72 (74)
52 cd01812 BAG1_N Ubiquitin-like 99.5 2.7E-14 5.9E-19 100.7 7.5 69 62-132 1-69 (71)
53 cd01763 Sumo Small ubiquitin-r 99.5 8.4E-14 1.8E-18 102.2 8.7 72 213-284 12-83 (87)
54 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 3.2E-14 6.9E-19 99.9 5.2 55 230-284 18-75 (75)
55 cd01799 Hoil1_N Ubiquitin-like 99.5 9.3E-14 2E-18 98.8 6.7 65 218-283 8-74 (75)
56 smart00213 UBQ Ubiquitin homol 99.5 1.4E-13 3E-18 94.7 6.8 64 213-277 1-64 (64)
57 cd01799 Hoil1_N Ubiquitin-like 99.5 2.7E-13 5.8E-18 96.4 7.6 64 68-133 9-74 (75)
58 smart00213 UBQ Ubiquitin homol 99.4 5.5E-13 1.2E-17 91.7 7.3 64 62-127 1-64 (64)
59 TIGR00601 rad23 UV excision re 99.4 6.2E-13 1.4E-17 121.9 8.1 72 213-284 1-75 (378)
60 TIGR00601 rad23 UV excision re 99.4 8.3E-13 1.8E-17 121.1 8.6 73 62-135 1-76 (378)
61 cd01814 NTGP5 Ubiquitin-like N 99.4 7.3E-13 1.6E-17 99.3 5.5 76 61-137 4-93 (113)
62 cd01795 USP48_C USP ubiquitin- 99.4 6.5E-13 1.4E-17 96.5 4.1 55 1-57 19-74 (107)
63 cd01814 NTGP5 Ubiquitin-like N 99.4 1.1E-12 2.3E-17 98.4 5.3 73 213-285 5-91 (113)
64 cd01769 UBL Ubiquitin-like dom 99.3 4.2E-12 9E-17 88.6 6.9 67 217-283 2-68 (69)
65 cd01795 USP48_C USP ubiquitin- 99.2 2E-11 4.4E-16 88.8 6.6 63 73-135 15-78 (107)
66 cd01769 UBL Ubiquitin-like dom 99.2 4.2E-11 9E-16 83.4 7.4 67 66-133 2-68 (69)
67 PF11976 Rad60-SLD: Ubiquitin- 99.2 8.5E-11 1.8E-15 83.0 7.7 70 213-282 1-71 (72)
68 KOG0010 Ubiquitin-like protein 99.2 2.9E-11 6.3E-16 111.4 6.3 71 213-284 16-86 (493)
69 KOG0011 Nucleotide excision re 99.2 6.2E-11 1.3E-15 104.1 6.9 74 62-136 1-76 (340)
70 KOG0010 Ubiquitin-like protein 99.1 7.7E-11 1.7E-15 108.7 6.6 74 61-136 15-88 (493)
71 PF11976 Rad60-SLD: Ubiquitin- 99.1 3.4E-10 7.4E-15 79.9 8.3 70 62-132 1-71 (72)
72 KOG0011 Nucleotide excision re 99.1 2.5E-10 5.4E-15 100.3 6.5 71 213-283 1-73 (340)
73 KOG0001 Ubiquitin and ubiquiti 99.1 1.4E-09 3.1E-14 76.0 9.2 72 64-136 2-73 (75)
74 KOG0001 Ubiquitin and ubiquiti 99.0 1.4E-09 3.1E-14 76.0 7.9 70 215-284 2-71 (75)
75 cd01789 Alp11_N Ubiquitin-like 99.0 2.2E-09 4.8E-14 78.1 8.9 71 214-284 3-81 (84)
76 cd01788 ElonginB Ubiquitin-lik 99.0 2E-09 4.2E-14 80.5 7.1 73 64-136 3-82 (119)
77 PLN02560 enoyl-CoA reductase 99.0 1.8E-09 3.9E-14 96.9 7.9 73 213-285 1-84 (308)
78 cd01789 Alp11_N Ubiquitin-like 98.9 7.7E-09 1.7E-13 75.2 8.8 71 63-133 3-80 (84)
79 PF14560 Ubiquitin_2: Ubiquiti 98.8 1.6E-08 3.6E-13 74.0 7.2 71 214-284 3-83 (87)
80 cd01788 ElonginB Ubiquitin-lik 98.8 2.1E-08 4.5E-13 75.0 6.4 69 141-210 3-80 (119)
81 PLN02560 enoyl-CoA reductase 98.7 3.3E-08 7.1E-13 88.8 7.4 70 62-132 1-81 (308)
82 KOG4248 Ubiquitin-like protein 98.7 3.1E-08 6.8E-13 98.2 7.1 73 63-137 4-76 (1143)
83 PF13881 Rad60-SLD_2: Ubiquiti 98.7 2.6E-07 5.7E-12 70.4 10.3 75 61-136 2-90 (111)
84 KOG4248 Ubiquitin-like protein 98.7 2.8E-08 6E-13 98.6 6.2 71 214-285 4-74 (1143)
85 cd01801 Tsc13_N Ubiquitin-like 98.7 8.2E-08 1.8E-12 68.6 6.8 55 230-284 20-77 (77)
86 PF14560 Ubiquitin_2: Ubiquiti 98.7 1.2E-07 2.6E-12 69.4 7.7 72 62-133 2-82 (87)
87 cd01811 OASL_repeat1 2'-5' oli 98.6 3.5E-07 7.6E-12 63.0 7.4 71 62-134 1-76 (80)
88 PF13881 Rad60-SLD_2: Ubiquiti 98.6 4.1E-07 8.9E-12 69.4 8.3 72 214-285 4-89 (111)
89 cd00196 UBQ Ubiquitin-like pro 98.5 8.9E-07 1.9E-11 59.0 7.4 66 218-283 3-68 (69)
90 PF11543 UN_NPL4: Nuclear pore 98.4 6.2E-07 1.3E-11 64.4 5.6 70 213-283 5-79 (80)
91 cd01811 OASL_repeat1 2'-5' oli 98.4 1.4E-06 3E-11 60.1 6.7 69 213-282 1-74 (80)
92 cd01801 Tsc13_N Ubiquitin-like 98.3 1.5E-06 3.3E-11 62.1 4.7 52 4-57 20-74 (77)
93 PF11543 UN_NPL4: Nuclear pore 98.2 2.8E-06 6.1E-11 61.0 5.2 70 138-208 4-78 (80)
94 cd00196 UBQ Ubiquitin-like pro 98.2 9.3E-06 2E-10 53.9 7.5 63 69-132 5-67 (69)
95 KOG0006 E3 ubiquitin-protein l 98.2 2.4E-06 5.1E-11 74.9 5.5 60 223-282 14-73 (446)
96 KOG3493 Ubiquitin-like protein 98.1 6.7E-07 1.5E-11 59.7 0.8 67 215-281 4-70 (73)
97 KOG0006 E3 ubiquitin-protein l 98.1 7.4E-06 1.6E-10 71.9 5.9 63 73-135 14-77 (446)
98 KOG1872 Ubiquitin-specific pro 98.0 1.2E-05 2.7E-10 74.3 6.6 70 213-283 4-74 (473)
99 KOG3493 Ubiquitin-like protein 98.0 3E-06 6.5E-11 56.6 1.2 69 63-132 3-71 (73)
100 KOG4495 RNA polymerase II tran 97.9 1.3E-05 2.9E-10 57.9 3.5 61 62-124 3-65 (110)
101 PF11470 TUG-UBL1: GLUT4 regul 97.7 0.00013 2.8E-09 50.0 5.9 62 220-281 4-65 (65)
102 KOG1872 Ubiquitin-specific pro 97.6 0.00015 3.3E-09 67.2 6.6 74 61-136 3-77 (473)
103 KOG1769 Ubiquitin-like protein 97.5 0.00074 1.6E-08 49.7 8.0 71 213-283 21-91 (99)
104 KOG4495 RNA polymerase II tran 97.5 0.00021 4.5E-09 51.8 4.9 54 221-274 10-65 (110)
105 PF00789 UBX: UBX domain; Int 97.3 0.0018 3.8E-08 46.5 8.3 70 213-282 7-81 (82)
106 PF08817 YukD: WXG100 protein 97.3 0.00054 1.2E-08 49.0 5.3 69 214-282 4-79 (79)
107 KOG1769 Ubiquitin-like protein 97.2 0.0042 9E-08 45.7 8.8 76 62-138 21-96 (99)
108 COG5417 Uncharacterized small 97.1 0.0036 7.9E-08 43.3 7.3 70 213-282 7-81 (81)
109 PF11470 TUG-UBL1: GLUT4 regul 97.1 0.0021 4.6E-08 44.1 6.1 62 145-207 3-65 (65)
110 cd01773 Faf1_like1_UBX Faf1 ik 97.1 0.0046 1E-07 44.4 7.8 71 213-284 6-81 (82)
111 smart00166 UBX Domain present 97.0 0.004 8.8E-08 44.5 7.5 70 213-282 5-79 (80)
112 PF13019 Telomere_Sde2: Telome 97.0 0.0037 8E-08 50.5 7.9 76 62-138 1-88 (162)
113 cd01767 UBX UBX (ubiquitin reg 96.8 0.0078 1.7E-07 42.7 7.6 69 213-283 3-76 (77)
114 cd01772 SAKS1_UBX SAKS1-like U 96.8 0.0074 1.6E-07 43.1 7.4 69 213-282 5-78 (79)
115 cd01770 p47_UBX p47-like ubiqu 96.7 0.0082 1.8E-07 42.9 7.0 68 213-280 5-76 (79)
116 cd01774 Faf1_like2_UBX Faf1 ik 96.7 0.014 3E-07 42.3 8.0 70 213-283 5-84 (85)
117 KOG1639 Steroid reductase requ 96.7 0.0042 9.1E-08 53.2 5.8 72 214-285 2-80 (297)
118 PF00789 UBX: UBX domain; Int 96.7 0.017 3.7E-07 41.3 8.4 71 60-131 5-80 (82)
119 PF08817 YukD: WXG100 protein 96.6 0.0075 1.6E-07 43.0 6.2 69 62-131 3-78 (79)
120 PF10302 DUF2407: DUF2407 ubiq 96.5 0.0023 4.9E-08 47.6 3.0 43 5-47 22-64 (97)
121 cd01771 Faf1_UBX Faf1 UBX doma 96.5 0.022 4.8E-07 40.8 7.8 71 213-284 5-80 (80)
122 KOG0013 Uncharacterized conser 96.4 0.0046 9.9E-08 51.6 4.6 58 221-278 155-212 (231)
123 PF10302 DUF2407: DUF2407 ubiq 96.4 0.0079 1.7E-07 44.7 5.2 56 216-271 4-64 (97)
124 smart00166 UBX Domain present 96.3 0.027 5.9E-07 40.2 7.4 70 61-131 4-78 (80)
125 KOG0013 Uncharacterized conser 96.2 0.0091 2E-07 49.9 4.9 60 72-131 156-215 (231)
126 PF13019 Telomere_Sde2: Telome 96.1 0.032 7E-07 45.1 7.6 64 213-276 1-72 (162)
127 cd01767 UBX UBX (ubiquitin reg 95.9 0.069 1.5E-06 37.7 7.9 67 61-130 2-73 (77)
128 PF12436 USP7_ICP0_bdg: ICP0-b 95.6 0.12 2.7E-06 45.2 9.8 105 151-256 88-223 (249)
129 cd01770 p47_UBX p47-like ubiqu 95.5 0.084 1.8E-06 37.7 7.2 68 60-128 3-74 (79)
130 cd01772 SAKS1_UBX SAKS1-like U 95.4 0.12 2.7E-06 36.8 7.8 69 61-131 4-77 (79)
131 cd01774 Faf1_like2_UBX Faf1 ik 95.3 0.18 3.8E-06 36.5 8.2 70 60-131 3-82 (85)
132 PF09379 FERM_N: FERM N-termin 95.0 0.22 4.7E-06 35.2 8.1 67 217-283 1-76 (80)
133 COG5227 SMT3 Ubiquitin-like pr 94.5 0.14 3.1E-06 36.9 5.9 69 213-281 25-93 (103)
134 cd01771 Faf1_UBX Faf1 UBX doma 94.4 0.33 7.1E-06 34.7 7.7 71 60-132 3-78 (80)
135 cd06409 PB1_MUG70 The MUG70 pr 94.4 0.11 2.3E-06 37.7 5.1 44 214-257 2-48 (86)
136 KOG1639 Steroid reductase requ 94.4 0.074 1.6E-06 45.8 4.9 70 62-131 1-76 (297)
137 PF14533 USP7_C2: Ubiquitin-sp 94.3 0.68 1.5E-05 39.5 10.9 101 74-177 35-161 (213)
138 cd01773 Faf1_like1_UBX Faf1 ik 94.3 0.47 1E-05 34.0 8.2 71 60-132 4-79 (82)
139 PF12436 USP7_ICP0_bdg: ICP0-b 94.3 0.12 2.6E-06 45.2 6.3 102 3-106 91-223 (249)
140 COG5417 Uncharacterized small 94.0 0.53 1.1E-05 32.8 7.5 61 71-131 15-80 (81)
141 PF14533 USP7_C2: Ubiquitin-sp 93.9 0.48 1E-05 40.5 9.0 96 2-101 39-161 (213)
142 PF11620 GABP-alpha: GA-bindin 93.7 0.54 1.2E-05 33.7 7.4 66 150-222 5-70 (88)
143 COG5227 SMT3 Ubiquitin-like pr 93.6 0.13 2.7E-06 37.2 4.1 71 62-133 25-95 (103)
144 PF15044 CLU_N: Mitochondrial 93.5 0.16 3.5E-06 36.0 4.5 57 229-285 1-59 (76)
145 KOG3206 Alpha-tubulin folding 93.4 0.23 5.1E-06 41.5 6.0 59 226-284 16-81 (234)
146 cd06406 PB1_P67 A PB1 domain i 93.4 0.47 1E-05 33.8 6.7 39 224-262 12-50 (80)
147 PF11620 GABP-alpha: GA-bindin 92.8 0.41 8.8E-06 34.3 5.6 58 225-282 5-62 (88)
148 cd01760 RBD Ubiquitin-like dom 92.2 0.36 7.8E-06 33.8 4.7 45 215-259 2-46 (72)
149 smart00455 RBD Raf-like Ras-bi 92.0 0.41 8.8E-06 33.3 4.8 44 216-259 3-46 (70)
150 KOG3206 Alpha-tubulin folding 91.3 0.68 1.5E-05 38.8 6.2 59 77-135 17-82 (234)
151 PF15044 CLU_N: Mitochondrial 91.0 0.39 8.5E-06 33.9 4.0 56 154-210 1-58 (76)
152 PF09379 FERM_N: FERM N-termin 90.9 3.5 7.5E-05 28.9 9.0 66 66-132 1-73 (80)
153 PRK06437 hypothetical protein; 90.8 1.8 3.8E-05 29.7 7.0 54 221-283 9-62 (67)
154 cd06407 PB1_NLP A PB1 domain i 89.8 1.4 3.1E-05 31.6 6.1 41 221-261 8-49 (82)
155 PF14453 ThiS-like: ThiS-like 89.5 2 4.4E-05 28.5 6.1 52 221-285 6-57 (57)
156 smart00666 PB1 PB1 domain. Pho 89.0 1.7 3.8E-05 30.6 6.1 45 215-260 4-48 (81)
157 cd06409 PB1_MUG70 The MUG70 pr 88.5 1.6 3.6E-05 31.6 5.6 37 64-101 3-39 (86)
158 PF14836 Ubiquitin_3: Ubiquiti 87.9 5.9 0.00013 28.8 8.1 64 73-137 14-83 (88)
159 smart00295 B41 Band 4.1 homolo 87.7 3.8 8.2E-05 34.0 8.4 70 213-282 4-81 (207)
160 cd01760 RBD Ubiquitin-like dom 87.4 1.4 3.1E-05 30.8 4.6 44 141-185 2-46 (72)
161 KOG4583 Membrane-associated ER 87.3 0.28 6.1E-06 44.0 1.2 63 61-124 9-75 (391)
162 PF02196 RBD: Raf-like Ras-bin 87.0 2.6 5.5E-05 29.3 5.8 51 215-265 3-55 (71)
163 PF14836 Ubiquitin_3: Ubiquiti 85.8 4.7 0.0001 29.3 6.7 60 224-284 15-80 (88)
164 cd06408 PB1_NoxR The PB1 domai 85.7 4.7 0.0001 29.2 6.6 46 221-269 10-55 (86)
165 KOG4598 Putative ubiquitin-spe 85.0 1.6 3.5E-05 43.2 5.1 174 73-256 877-1105(1203)
166 PF10790 DUF2604: Protein of U 84.7 3.8 8.1E-05 27.8 5.3 64 221-284 4-71 (76)
167 cd01818 TIAM1_RBD Ubiquitin do 84.6 3.1 6.7E-05 29.2 5.0 50 216-265 3-52 (77)
168 KOG4583 Membrane-associated ER 84.6 0.47 1E-05 42.7 1.3 59 213-271 10-72 (391)
169 cd00754 MoaD Ubiquitin domain 84.2 5.5 0.00012 27.8 6.5 55 224-283 17-75 (80)
170 smart00455 RBD Raf-like Ras-bi 83.8 3 6.6E-05 28.9 4.9 43 142-185 3-46 (70)
171 KOG4261 Talin [Cytoskeleton] 83.7 2.9 6.2E-05 41.9 6.3 107 149-257 14-130 (1003)
172 PRK06437 hypothetical protein; 83.6 12 0.00025 25.6 7.8 54 72-134 10-63 (67)
173 KOG0012 DNA damage inducible p 83.2 2.5 5.4E-05 38.6 5.2 64 221-284 11-76 (380)
174 PRK08364 sulfur carrier protei 82.4 13 0.00029 25.5 7.9 51 224-283 15-65 (70)
175 KOG2086 Protein tyrosine phosp 82.3 1.9 4.1E-05 39.7 4.2 68 213-280 306-377 (380)
176 cd06411 PB1_p51 The PB1 domain 81.3 6.2 0.00013 28.0 5.6 35 224-258 8-42 (78)
177 PF10790 DUF2604: Protein of U 79.7 8.6 0.00019 26.1 5.5 63 72-134 5-71 (76)
178 PF12754 Blt1: Cell-cycle cont 79.1 0.62 1.3E-05 41.7 0.0 61 213-273 79-159 (309)
179 PRK06488 sulfur carrier protei 78.4 14 0.00031 24.8 6.7 56 220-283 5-60 (65)
180 cd05992 PB1 The PB1 domain is 78.3 5.8 0.00013 27.7 4.9 44 215-259 3-47 (81)
181 PF08337 Plexin_cytopl: Plexin 78.0 6.8 0.00015 38.1 6.6 62 149-211 203-290 (539)
182 cd01818 TIAM1_RBD Ubiquitin do 77.7 6.8 0.00015 27.5 4.8 50 142-192 3-53 (77)
183 cd01817 RGS12_RBD Ubiquitin do 77.4 13 0.00028 26.0 6.1 44 217-260 4-47 (73)
184 KOG2982 Uncharacterized conser 77.3 3 6.5E-05 37.6 3.7 56 227-282 352-415 (418)
185 cd00754 MoaD Ubiquitin domain 77.0 14 0.0003 25.6 6.6 59 74-137 17-79 (80)
186 PF00564 PB1: PB1 domain; Int 76.8 15 0.00032 25.8 6.7 44 215-259 4-48 (84)
187 PF14453 ThiS-like: ThiS-like 76.1 12 0.00026 24.9 5.4 55 139-209 1-55 (57)
188 PF08337 Plexin_cytopl: Plexin 76.0 4 8.7E-05 39.7 4.5 63 222-284 201-289 (539)
189 PLN02799 Molybdopterin synthas 75.8 17 0.00036 25.6 6.8 56 223-283 19-77 (82)
190 KOG0012 DNA damage inducible p 75.4 3.9 8.4E-05 37.4 4.0 65 72-136 12-78 (380)
191 cd06407 PB1_NLP A PB1 domain i 75.0 10 0.00022 27.1 5.4 42 66-107 3-45 (82)
192 cd01777 SNX27_RA Ubiquitin dom 74.8 5.6 0.00012 28.8 3.9 42 214-255 3-44 (87)
193 cd06406 PB1_P67 A PB1 domain i 74.4 9.3 0.0002 27.2 4.9 37 74-110 12-48 (80)
194 PF10209 DUF2340: Uncharacteri 73.9 8.1 0.00018 29.8 4.8 57 228-284 21-108 (122)
195 KOG2561 Adaptor protein NUB1, 73.2 1.2 2.6E-05 41.8 0.2 58 227-284 54-111 (568)
196 PF12754 Blt1: Cell-cycle cont 73.2 1.1 2.4E-05 40.1 0.0 63 61-124 78-160 (309)
197 cd06396 PB1_NBR1 The PB1 domai 73.1 17 0.00036 26.0 6.0 30 220-249 7-38 (81)
198 PRK05863 sulfur carrier protei 73.1 16 0.00034 24.7 5.7 51 151-208 9-59 (65)
199 PRK06488 sulfur carrier protei 72.9 25 0.00055 23.5 7.0 58 72-137 7-64 (65)
200 KOG4261 Talin [Cytoskeleton] 72.9 4.9 0.00011 40.4 4.2 97 2-99 18-121 (1003)
201 PF02196 RBD: Raf-like Ras-bin 71.9 13 0.00028 25.7 5.2 44 141-185 3-47 (71)
202 TIGR02958 sec_mycoba_snm4 secr 71.7 22 0.00047 34.1 8.3 69 215-284 5-80 (452)
203 smart00295 B41 Band 4.1 homolo 71.6 41 0.00088 27.7 9.3 63 61-124 3-72 (207)
204 PRK05659 sulfur carrier protei 70.7 25 0.00053 23.6 6.3 52 151-208 9-60 (66)
205 PF04017 DUF366: Domain of unk 70.3 11 0.00023 31.1 5.1 83 29-113 8-117 (183)
206 KOG2689 Predicted ubiquitin re 69.5 13 0.00028 32.8 5.7 72 213-284 211-287 (290)
207 smart00666 PB1 PB1 domain. Pho 68.9 28 0.00062 24.2 6.6 43 64-108 4-46 (81)
208 PRK08364 sulfur carrier protei 68.6 35 0.00076 23.3 8.0 53 74-135 15-67 (70)
209 cd01768 RA RA (Ras-associating 67.2 41 0.0009 23.7 7.9 35 222-256 12-48 (87)
210 KOG2982 Uncharacterized conser 66.7 15 0.00032 33.3 5.6 53 79-131 354-414 (418)
211 PF14451 Ub-Mut7C: Mut7-C ubiq 65.5 22 0.00048 25.3 5.4 51 149-209 24-75 (81)
212 PF10209 DUF2340: Uncharacteri 64.9 18 0.00039 27.9 5.0 54 79-132 22-106 (122)
213 TIGR01682 moaD molybdopterin c 63.9 47 0.001 23.2 7.3 55 224-283 17-75 (80)
214 KOG4250 TANK binding protein k 63.3 13 0.00029 37.1 5.0 42 220-261 322-363 (732)
215 PRK06083 sulfur carrier protei 62.2 45 0.00098 23.9 6.5 60 139-208 19-78 (84)
216 PLN02799 Molybdopterin synthas 62.0 44 0.00094 23.4 6.5 70 62-136 2-80 (82)
217 cd06398 PB1_Joka2 The PB1 doma 61.8 42 0.00092 24.5 6.4 44 215-259 3-52 (91)
218 PRK07440 hypothetical protein; 61.6 46 0.001 22.8 6.3 60 139-208 5-64 (70)
219 PRK07696 sulfur carrier protei 61.2 47 0.001 22.5 6.2 51 152-208 10-61 (67)
220 PF02505 MCR_D: Methyl-coenzym 61.0 86 0.0019 25.2 8.7 99 6-121 13-120 (153)
221 cd00565 ThiS ThiaminS ubiquiti 60.6 39 0.00086 22.6 5.8 56 221-283 5-60 (65)
222 PF00564 PB1: PB1 domain; Int 60.1 37 0.00081 23.6 5.9 37 72-108 10-47 (84)
223 PF02597 ThiS: ThiS family; I 60.0 23 0.0005 24.2 4.7 60 221-283 11-72 (77)
224 cd06410 PB1_UP2 Uncharacterize 58.8 34 0.00075 25.3 5.5 43 219-262 19-63 (97)
225 smart00144 PI3K_rbd PI3-kinase 58.7 75 0.0016 23.8 9.1 76 60-135 16-105 (108)
226 KOG2086 Protein tyrosine phosp 58.6 19 0.00041 33.3 4.9 69 60-129 304-376 (380)
227 cd01817 RGS12_RBD Ubiquitin do 58.6 31 0.00068 24.1 4.9 41 144-185 5-46 (73)
228 PTZ00380 microtubule-associate 58.2 28 0.0006 26.9 5.1 47 149-196 41-88 (121)
229 cd05992 PB1 The PB1 domain is 57.0 33 0.00072 23.7 5.1 36 72-107 9-45 (81)
230 TIGR02958 sec_mycoba_snm4 secr 57.0 44 0.00096 32.0 7.4 71 139-210 3-80 (452)
231 PF00788 RA: Ras association ( 56.6 34 0.00074 24.2 5.3 33 224-256 18-52 (93)
232 smart00144 PI3K_rbd PI3-kinase 55.9 85 0.0018 23.5 7.8 61 149-210 30-104 (108)
233 KOG4250 TANK binding protein k 55.8 31 0.00067 34.6 6.1 43 72-114 324-368 (732)
234 TIGR01687 moaD_arch MoaD famil 55.7 71 0.0015 22.6 7.8 56 224-283 17-83 (88)
235 PF02017 CIDE-N: CIDE-N domain 54.6 40 0.00086 23.9 5.0 51 233-285 21-73 (78)
236 PF14451 Ub-Mut7C: Mut7-C ubiq 54.5 54 0.0012 23.4 5.8 53 222-283 22-75 (81)
237 cd06408 PB1_NoxR The PB1 domai 54.4 58 0.0013 23.6 5.9 36 62-99 3-38 (86)
238 PF14732 UAE_UbL: Ubiquitin/SU 53.5 15 0.00032 26.6 2.8 53 231-283 7-68 (87)
239 cd06396 PB1_NBR1 The PB1 domai 52.3 47 0.001 23.7 5.1 35 65-99 2-38 (81)
240 PF09469 Cobl: Cordon-bleu ubi 52.2 18 0.00039 25.5 2.9 40 241-283 2-44 (79)
241 cd01787 GRB7_RA RA (RAS-associ 52.1 40 0.00086 24.3 4.7 39 215-253 5-43 (85)
242 cd01615 CIDE_N CIDE_N domain, 52.0 55 0.0012 23.2 5.3 51 233-285 21-73 (78)
243 PF11069 DUF2870: Protein of u 51.8 15 0.00032 27.2 2.5 28 104-132 3-30 (98)
244 PTZ00380 microtubule-associate 51.8 19 0.00042 27.8 3.3 43 227-269 45-87 (121)
245 PF08783 DWNN: DWNN domain; I 51.7 30 0.00065 24.3 4.0 30 226-255 13-44 (74)
246 cd01777 SNX27_RA Ubiquitin dom 51.6 51 0.0011 23.9 5.2 40 63-103 3-42 (87)
247 KOG3439 Protein conjugation fa 51.5 54 0.0012 24.8 5.5 40 223-262 45-84 (116)
248 smart00314 RA Ras association 51.4 56 0.0012 23.2 5.7 48 221-268 14-69 (90)
249 cd06411 PB1_p51 The PB1 domain 51.2 37 0.00081 24.0 4.4 37 73-109 7-43 (78)
250 PRK06083 sulfur carrier protei 50.4 80 0.0017 22.6 6.2 56 221-283 24-79 (84)
251 cd00565 ThiS ThiaminS ubiquiti 49.2 77 0.0017 21.1 6.6 59 72-137 6-64 (65)
252 smart00266 CAD Domains present 49.0 55 0.0012 23.0 4.9 51 233-285 19-71 (74)
253 TIGR01682 moaD molybdopterin c 48.9 89 0.0019 21.7 7.2 59 74-137 17-79 (80)
254 KOG0007 Splicing factor 3a, su 48.3 7.8 0.00017 35.6 0.8 48 72-119 292-340 (341)
255 KOG4572 Predicted DNA-binding 45.6 41 0.00089 34.4 5.2 63 221-283 3-69 (1424)
256 PRK08053 sulfur carrier protei 45.5 91 0.002 20.9 6.8 60 139-208 1-60 (66)
257 KOG0007 Splicing factor 3a, su 45.1 8.6 0.00019 35.3 0.6 51 219-269 289-340 (341)
258 COG5100 NPL4 Nuclear pore prot 44.0 71 0.0015 29.9 6.1 69 214-283 2-78 (571)
259 PF02597 ThiS: ThiS family; I 43.2 1E+02 0.0022 20.8 7.1 62 74-137 13-76 (77)
260 KOG4572 Predicted DNA-binding 42.4 32 0.0007 35.1 4.0 51 72-122 4-56 (1424)
261 cd06539 CIDE_N_A CIDE_N domain 42.1 98 0.0021 22.0 5.3 51 233-285 21-73 (78)
262 PF11069 DUF2870: Protein of u 41.7 27 0.00058 25.9 2.5 29 180-209 3-31 (98)
263 cd01775 CYR1_RA Ubiquitin doma 41.6 1.1E+02 0.0024 22.6 5.7 36 220-255 10-46 (97)
264 cd06397 PB1_UP1 Uncharacterize 41.2 1E+02 0.0023 21.9 5.3 43 214-257 2-44 (82)
265 TIGR03028 EpsE polysaccharide 40.3 2.4E+02 0.0052 24.2 13.5 50 120-169 1-56 (239)
266 TIGR01687 moaD_arch MoaD famil 40.0 1.3E+02 0.0029 21.2 7.9 61 73-137 16-87 (88)
267 PF02991 Atg8: Autophagy prote 39.5 57 0.0012 24.5 4.1 43 228-270 38-81 (104)
268 COG2104 ThiS Sulfur transfer p 38.5 1.3E+02 0.0028 20.6 6.4 52 151-208 11-62 (68)
269 COG2029 Uncharacterized conser 38.4 11 0.00025 30.6 0.2 38 29-67 11-48 (189)
270 cd01776 Rin1_RA Ubiquitin doma 37.5 64 0.0014 23.2 3.8 41 225-265 16-61 (87)
271 TIGR03260 met_CoM_red_D methyl 37.3 2.2E+02 0.0047 22.9 9.3 99 6-121 12-118 (150)
272 KOG3439 Protein conjugation fa 36.7 39 0.00084 25.6 2.8 34 2-37 50-83 (116)
273 PF10407 Cytokin_check_N: Cdc1 36.5 1.3E+02 0.0028 21.0 5.2 61 223-284 3-70 (73)
274 smart00314 RA Ras association 36.4 1.3E+02 0.0028 21.3 5.6 43 139-182 5-51 (90)
275 cd06536 CIDE_N_ICAD CIDE_N dom 36.3 1E+02 0.0022 22.0 4.7 51 233-285 21-75 (80)
276 PF02505 MCR_D: Methyl-coenzym 36.2 1E+02 0.0022 24.8 5.2 107 78-197 9-120 (153)
277 PF11834 DUF3354: Domain of un 35.8 54 0.0012 22.6 3.2 44 233-282 26-69 (69)
278 PF08825 E2_bind: E2 binding d 35.4 51 0.0011 23.7 3.2 57 227-284 1-71 (84)
279 PF00794 PI3K_rbd: PI3-kinase 35.0 1.8E+02 0.004 21.4 7.1 70 139-209 17-101 (106)
280 TIGR01683 thiS thiamine biosyn 34.9 1.4E+02 0.0029 19.8 6.6 59 72-137 5-63 (64)
281 cd06410 PB1_UP2 Uncharacterize 34.8 1.7E+02 0.0038 21.5 6.1 37 67-105 18-54 (97)
282 PRK09570 rpoH DNA-directed RNA 34.8 51 0.0011 23.4 3.0 42 239-285 23-64 (79)
283 PF00794 PI3K_rbd: PI3-kinase 34.3 1.9E+02 0.0041 21.3 8.0 75 59-133 14-101 (106)
284 PF02017 CIDE-N: CIDE-N domain 34.3 1.3E+02 0.0028 21.3 5.0 48 158-209 21-70 (78)
285 PF00276 Ribosomal_L23: Riboso 34.1 1.1E+02 0.0024 22.2 4.9 42 72-113 20-62 (91)
286 cd06398 PB1_Joka2 The PB1 doma 33.9 1.6E+02 0.0035 21.4 5.7 36 72-107 9-50 (91)
287 PRK15078 polysaccharide export 33.4 4E+02 0.0087 24.8 12.8 172 81-285 137-348 (379)
288 PF14847 Ras_bdg_2: Ras-bindin 33.0 1.1E+02 0.0024 23.0 4.8 36 215-250 3-38 (105)
289 PRK11840 bifunctional sulfur c 32.9 1.5E+02 0.0033 27.1 6.4 53 151-209 9-61 (326)
290 TIGR03028 EpsE polysaccharide 32.7 3.2E+02 0.007 23.4 18.8 205 46-283 1-236 (239)
291 PF02991 Atg8: Autophagy prote 32.0 1.1E+02 0.0023 23.0 4.5 45 151-196 36-81 (104)
292 cd01787 GRB7_RA RA (RAS-associ 31.8 1.7E+02 0.0036 21.2 5.3 38 64-102 5-42 (85)
293 cd01764 Urm1 Urm1-like ubuitin 30.6 1E+02 0.0022 22.5 4.2 58 78-137 24-93 (94)
294 PF01191 RNA_pol_Rpb5_C: RNA p 30.6 58 0.0013 22.8 2.7 42 239-285 20-61 (74)
295 cd01768 RA RA (Ras-associating 29.8 1.8E+02 0.0039 20.3 5.4 33 149-182 14-48 (87)
296 PRK06944 sulfur carrier protei 29.2 1.7E+02 0.0037 19.2 6.9 55 221-283 6-60 (65)
297 cd06538 CIDE_N_FSP27 CIDE_N do 28.9 1.6E+02 0.0035 20.9 4.7 51 233-285 21-72 (79)
298 PF06234 TmoB: Toluene-4-monoo 28.9 2.3E+02 0.0049 20.5 7.7 61 149-209 16-83 (85)
299 PF10787 YfmQ: Uncharacterised 28.5 1.8E+02 0.0039 23.1 5.3 87 80-166 22-123 (149)
300 KOG2689 Predicted ubiquitin re 27.8 1.9E+02 0.004 25.7 5.9 71 60-131 209-284 (290)
301 cd06537 CIDE_N_B CIDE_N domain 27.2 1.8E+02 0.0039 20.8 4.7 51 233-285 21-72 (81)
302 KOG2507 Ubiquitin regulatory p 27.2 1.1E+02 0.0024 29.0 4.6 73 213-285 315-392 (506)
303 PRK05738 rplW 50S ribosomal pr 27.1 1.4E+02 0.003 21.8 4.3 40 72-111 20-60 (92)
304 TIGR03260 met_CoM_red_D methyl 26.6 2E+02 0.0043 23.1 5.4 109 77-198 7-119 (150)
305 cd01611 GABARAP Ubiquitin doma 26.5 1.1E+02 0.0023 23.3 3.8 55 227-282 45-104 (112)
306 COG2029 Uncharacterized conser 26.3 22 0.00048 28.9 0.0 37 104-144 12-48 (189)
307 PRK11840 bifunctional sulfur c 25.8 2.2E+02 0.0049 26.0 6.3 56 221-283 6-61 (326)
308 cd01611 GABARAP Ubiquitin doma 25.7 1.2E+02 0.0025 23.1 3.9 45 151-196 44-89 (112)
309 TIGR03636 L23_arch archaeal ri 25.2 1.9E+02 0.0042 20.3 4.6 34 72-105 14-47 (77)
310 COG4260 Membrane protease subu 25.0 3.2E+02 0.0069 24.6 6.8 116 49-169 36-166 (345)
311 PF02192 PI3K_p85B: PI3-kinase 24.8 68 0.0015 22.7 2.3 26 150-175 2-27 (78)
312 PF00276 Ribosomal_L23: Riboso 24.2 1.5E+02 0.0032 21.5 4.1 41 223-263 21-62 (91)
313 cd06535 CIDE_N_CAD CIDE_N doma 23.7 2.4E+02 0.0051 20.0 4.8 48 233-285 21-72 (77)
314 PF06234 TmoB: Toluene-4-monoo 23.6 2.9E+02 0.0062 19.9 6.5 59 75-133 17-83 (85)
315 KOG1364 Predicted ubiquitin re 22.3 92 0.002 28.6 3.1 66 213-278 278-349 (356)
316 PF01376 Enterotoxin_b: Heat-l 22.2 1.6E+02 0.0035 20.9 3.7 31 142-172 39-70 (102)
317 PF14847 Ras_bdg_2: Ras-bindin 22.2 2.3E+02 0.0049 21.3 4.8 36 64-100 3-38 (105)
318 PRK14548 50S ribosomal protein 21.9 2.5E+02 0.0054 20.2 4.7 34 72-105 21-54 (84)
319 PRK05738 rplW 50S ribosomal pr 21.4 2.2E+02 0.0048 20.7 4.5 40 222-261 20-60 (92)
320 KOG2660 Locus-specific chromos 20.9 76 0.0016 28.8 2.3 44 227-270 168-213 (331)
321 cd01766 Ufm1 Urm1-like ubiquit 20.8 3.1E+02 0.0067 19.2 5.2 60 226-285 19-79 (82)
322 PRK08453 fliD flagellar cappin 20.2 2.8E+02 0.0061 28.1 6.3 24 72-95 137-160 (673)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.84 E-value=2e-20 Score=141.21 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=89.4
Q ss_pred cccccCCCCCceeee---eCCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecccccc
Q 023198 43 TVIDYGIPNNSVIHN---DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLD 119 (286)
Q Consensus 43 ~l~~y~i~~~s~l~l---~~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~ 119 (286)
.-..|++.+-+++|+ +++.|+|+|+++. |++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~-G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (103)
T cd01802 6 EPPFFNEDNMGPFHYKLPFYDTMELFIETLT-GTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLN 84 (103)
T ss_pred CCCccccCCcceeEEeeccCCCEEEEEEcCC-CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHH
Confidence 345688999999999 6779999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCeEEEEeecccc
Q 023198 120 VLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 120 ~~~I~~~s~i~l~~~~~~~ 138 (286)
+|+|.++++++++++++||
T Consensus 85 dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 85 DYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred HcCCCCCCEEEEEEecCCC
Confidence 9999999999999998775
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.80 E-value=2.3e-19 Score=127.89 Aligned_cols=74 Identities=16% Similarity=0.308 Sum_probs=71.6
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
|+|+||+.. |++++++|++++||+++|++|++++|+|+++|+|+|+|++|+|+.+|++|+|+++++++++++++
T Consensus 1 m~i~vk~~~-G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~~ 74 (74)
T cd01807 1 MFLTVKLLQ-GRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRPP 74 (74)
T ss_pred CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcCC
Confidence 789999999 99999999999999999999999999999999999999999999999999999999999998863
No 3
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.80 E-value=4.3e-19 Score=133.90 Aligned_cols=89 Identities=25% Similarity=0.375 Sum_probs=83.6
Q ss_pred ccccCCCceEEEEeeee--eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCC
Q 023198 196 YYDIKENEVLQIIRHVK--HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI 273 (286)
Q Consensus 196 ~y~i~~~~~i~l~~~~~--~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I 273 (286)
.+++.+-+++++.+++. |+++||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 45677788999988865 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEcC
Q 023198 274 VNESIVNLTDL 284 (286)
Q Consensus 274 ~~~~~l~l~~~ 284 (286)
++|++|+++.+
T Consensus 89 ~~~stL~l~~~ 99 (103)
T cd01802 89 SEGCTLKLVLA 99 (103)
T ss_pred CCCCEEEEEEe
Confidence 99999999864
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.80 E-value=2.8e-19 Score=127.39 Aligned_cols=74 Identities=23% Similarity=0.292 Sum_probs=70.6
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
|+|+||+ +++++++|++++||+++|++|++++|+|+++|+|+|+|++|+|+.+|++|+|+++++++++++++||
T Consensus 1 mqi~vk~---~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA---QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC---CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 7899997 4789999999999999999999999999999999999999999999999999999999999998875
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.79 E-value=3.7e-19 Score=126.76 Aligned_cols=73 Identities=32% Similarity=0.443 Sum_probs=70.8
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
|+|+||+.+|+++++++++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|||+++++|+++.|.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999875
No 6
>PTZ00044 ubiquitin; Provisional
Probab=99.78 E-value=1.4e-18 Score=124.43 Aligned_cols=76 Identities=21% Similarity=0.378 Sum_probs=73.6
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
|+|+||+++ |+++++++++++||+++|++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++++||
T Consensus 1 m~i~vk~~~-G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLT-GKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 789999999 9999999999999999999999999999999999999999999999999999999999999998764
No 7
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.9e-20 Score=135.54 Aligned_cols=76 Identities=36% Similarity=0.505 Sum_probs=74.3
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
|+++++++. |++++++++|++||.++|++|++++|+|+++|+|+|+|++|+|+.|+++|||+..+|++++++++||
T Consensus 1 ~~~~~~~~~-GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLT-GKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEee-CceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 578999999 9999999999999999999999999999999999999999999999999999999999999999998
No 8
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.76 E-value=2e-18 Score=122.96 Aligned_cols=74 Identities=12% Similarity=0.168 Sum_probs=71.3
Q ss_pred EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
|+||++. |+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++++++++.+++.||
T Consensus 1 i~vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDK-GRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCC-CCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 6899999 9999999999999999999999999999999999999999999999999999999999999988764
No 9
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=3.6e-19 Score=139.41 Aligned_cols=76 Identities=34% Similarity=0.504 Sum_probs=74.5
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
|+|||++++ |+++++++.+++||..+|++||+.+|||+++|||+|+|++|+|+++|+||+|+..++++++++++||
T Consensus 1 m~ifVk~l~-~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLT-GKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred Cccchhhcc-ccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 689999999 9999999999999999999999999999999999999999999999999999999999999999987
No 10
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.76 E-value=3.1e-18 Score=122.88 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=70.5
Q ss_pred eEEEEEeCCCCcE-EEEE-EcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 62 MKLYFKTPSNEKT-FELK-ANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 62 ~~i~Vk~~~~g~~-~~l~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
|+|+||++. |++ ++++ +.+++||+++|++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++++++.
T Consensus 1 M~I~vk~~~-G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMD-GKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCC-CCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999 997 6895 8999999999999999999999999999999999999999999999999999998874
No 11
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.75 E-value=3e-18 Score=122.09 Aligned_cols=70 Identities=24% Similarity=0.296 Sum_probs=66.5
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+ ++++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++++|||++.|
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 6789987 478999999999999999999999999999999999999999999999999999999999875
No 12
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.75 E-value=3.3e-18 Score=120.56 Aligned_cols=70 Identities=19% Similarity=0.395 Sum_probs=67.9
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+||++.|+++.+++++++||+++|++|+++.|+|+++|+|+|+|++|+|+.+|++|+|++|++||++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999876
No 13
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.75 E-value=4.2e-18 Score=122.21 Aligned_cols=73 Identities=22% Similarity=0.438 Sum_probs=69.3
Q ss_pred eEEEEEeecceE-EEee-cCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 213 HSIFVKLLNGRY-IILE-VAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 213 ~~i~vk~~~g~~-~~l~-v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
|+|+||+.+|++ +.++ +.+++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+++.|.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 689999999997 6895 899999999999999999999999999999999999999999999999999999874
No 14
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.74 E-value=6.3e-18 Score=119.55 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=67.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
|.+.|++..|+.+.+++++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||-
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999984
No 15
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.7e-18 Score=112.71 Aligned_cols=70 Identities=29% Similarity=0.436 Sum_probs=67.6
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
|.|.|++++ |+.+.++++|+|+|+.+|++|++++||||.+|||+|+|+++.|+.|-++|++..||.+|++
T Consensus 1 m~iKvktLt-~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeec-cceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 578999999 9999999999999999999999999999999999999999999999999999999999874
No 16
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.73 E-value=6.3e-18 Score=118.76 Aligned_cols=68 Identities=31% Similarity=0.393 Sum_probs=65.9
Q ss_pred EEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 216 FVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 216 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
.||..+|+++.+++++++||+++|++|++++|+|+++|+|+|+|++|+|+.+|.+|+|++|++||++.
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999975
No 17
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.73 E-value=1.5e-17 Score=118.98 Aligned_cols=76 Identities=37% Similarity=0.513 Sum_probs=73.6
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
|+|+|++.. |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++++||
T Consensus 1 m~i~v~~~~-g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCC-CCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 789999999 9999999999999999999999999999999999999999999999999999999999999998775
No 18
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.73 E-value=7.2e-18 Score=120.09 Aligned_cols=70 Identities=26% Similarity=0.301 Sum_probs=67.9
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+||++.|+++++++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||+++++|++..|
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999999999876
No 19
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.73 E-value=2.3e-17 Score=118.02 Aligned_cols=76 Identities=25% Similarity=0.371 Sum_probs=73.3
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
|+|+|++.+ |+++.+++.+++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++++++++.+||
T Consensus 1 m~i~v~~~~-g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCC-CCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 789999999 9999999999999999999999999999999999999999999999999999999999999988764
No 20
>PTZ00044 ubiquitin; Provisional
Probab=99.73 E-value=1.2e-17 Score=119.58 Aligned_cols=72 Identities=28% Similarity=0.403 Sum_probs=69.8
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++++|++|++..+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEE
Confidence 679999999999999999999999999999999999999999999999999999999999999999999874
No 21
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.72 E-value=2e-17 Score=117.01 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=68.5
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~ 133 (286)
|.|+|++.. |+.+.+++++++||++||++|+++.|+|+++|||+|+|+.|+|+.+|++|||.+|++++|..
T Consensus 2 ~~i~vkt~~-Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRL-GKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 789999999 99999999999999999999999999999999999999999999999999999999999863
No 22
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.72 E-value=1.9e-17 Score=116.59 Aligned_cols=70 Identities=19% Similarity=0.467 Sum_probs=67.4
Q ss_pred EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198 64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~ 134 (286)
|+||++. |+++++++++++||+++|++|++++|+|+++|+|+|+|++|+|+.+|++|+|.++|+++++.|
T Consensus 1 i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNT-GHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCC-CCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 5899999 999999999999999999999999999999999999999999999999999999999999754
No 23
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.72 E-value=2.9e-17 Score=118.07 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=73.4
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ 139 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~ 139 (286)
.|+|+|++.. |+.+++++++++||++||++|+++.|+|+++|+|+|+|+.|+|+ +|++|||.++++++++..+++|+
T Consensus 1 ~m~I~Vk~~~-G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTT-GTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECC-CCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 4899999999 99999999999999999999999999999999999999999999 99999999999999999888763
No 24
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.71 E-value=2.4e-17 Score=115.76 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=65.5
Q ss_pred EEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198 65 YFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 65 ~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~ 133 (286)
.||.++ |+++++++++++||+++|++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++++
T Consensus 2 ~vk~~~-G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLST-GKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCC-CCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 578888 99999999999999999999999999999999999999999999999999999999999875
No 25
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.70 E-value=4.9e-17 Score=115.06 Aligned_cols=72 Identities=31% Similarity=0.455 Sum_probs=69.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|.++||+++|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++||+++|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999875
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1e-17 Score=109.11 Aligned_cols=70 Identities=30% Similarity=0.553 Sum_probs=67.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
|.|.||+++|+.+.++++|+++|+.+|+.|++++||||.+|||+|.|+.|.|+.|-.+|++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999984
No 27
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.70 E-value=1.1e-16 Score=114.93 Aligned_cols=73 Identities=29% Similarity=0.514 Sum_probs=70.2
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCC--CCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGI--PVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi--p~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~ 135 (286)
|+|+|++.+ |+++++++++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++|++.+|++++++++.
T Consensus 1 m~i~vk~~~-g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLK-QQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 789999999 999999999999999999999999999 9999999999999999999999999999999988764
No 28
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.69 E-value=8.8e-17 Score=115.37 Aligned_cols=72 Identities=32% Similarity=0.449 Sum_probs=69.2
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCC--CCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQ--APDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi--~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|.++|++.+|+++.+++++++||++||++|++++|+ |+++|+|+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence 679999999999999999999999999999999999 999999999999999999999999999999998764
No 29
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.69 E-value=1.1e-16 Score=114.55 Aligned_cols=72 Identities=31% Similarity=0.514 Sum_probs=69.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|.|.|++.+|+++.+++++++||++||++|+++.|+|++.|+|+|+|+.|.|+.+|++|++++|++||++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999875
No 30
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.68 E-value=1.1e-16 Score=114.41 Aligned_cols=72 Identities=46% Similarity=0.657 Sum_probs=69.8
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+|++.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++++|++|++..+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 679999999999999999999999999999999999999999999999999999999999999999999876
No 31
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.68 E-value=1.8e-16 Score=112.14 Aligned_cols=72 Identities=21% Similarity=0.382 Sum_probs=69.2
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~ 134 (286)
|+|+||++. |+++++++++++||+++|++|++.+|+|++.|+|+|+|+.|+|+.+|++|++++|++++++.+
T Consensus 1 i~i~vk~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLD-SQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 689999999 999999999999999999999999999999999999999999999999999999999998753
No 32
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.68 E-value=1.2e-16 Score=112.94 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=67.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+.|+||+.+|+ ..+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++||+++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 36889999997 489999999999999999999999999999999999999999999999999999999875
No 33
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.68 E-value=1.2e-16 Score=114.88 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=67.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
|+|+||+..|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+ +|++|||++|++|+++.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVP 71 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999 99999999999999975
No 34
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.67 E-value=1.4e-16 Score=115.18 Aligned_cols=72 Identities=28% Similarity=0.314 Sum_probs=69.4
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEE--EecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRL--VFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L--~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+++||+++|+++.+++++++||++||++|++++|+|+++|+| +|+|+.|+|+.+|++|||++|++|+++.+
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 6899999999999999999999999999999999999999999 89999999999999999999999999875
No 35
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=7e-18 Score=123.11 Aligned_cols=72 Identities=47% Similarity=0.660 Sum_probs=68.8
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+++++++++|+++.++++|++||..+|++|+.++|||+++|+|+|+|+.|+|+.||++|||+..||||+.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~r 72 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999998754
No 36
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.66 E-value=2.1e-16 Score=111.55 Aligned_cols=68 Identities=25% Similarity=0.284 Sum_probs=64.3
Q ss_pred EEEEee-cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCC-CccccCCCCCCCEEEEE
Q 023198 215 IFVKLL-NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD-RNLASYKIVNESIVNLT 282 (286)
Q Consensus 215 i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~-~tL~~y~I~~~~~l~l~ 282 (286)
++||+. +|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|||++|++|++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 468888 999999999999999999999999999999999999999999987 68999999999999984
No 37
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.66 E-value=4e-16 Score=109.49 Aligned_cols=68 Identities=38% Similarity=0.607 Sum_probs=65.3
Q ss_pred EeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 218 KLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 218 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
|+++|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.||.+|||++|++|++..+.
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999999998763
No 38
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.65 E-value=3.2e-16 Score=113.23 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=70.3
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEE--EECCEEeeccccccccccCCCCeEEEEeec
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDI--YYGGKLIESYITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L--~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~ 135 (286)
|+|+|++.. |+++.+++++++||++||++|++..|+|+++|+| +|+|+.|+|+.+|++||+.+|++++++++.
T Consensus 3 ~~i~Vk~~~-G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLG-GNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCC-CCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 899999999 9999999999999999999999999999999999 899999999999999999999999998874
No 39
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.65 E-value=5.5e-16 Score=109.46 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~ 134 (286)
+.|+|++.. |+ .++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.++++++++++
T Consensus 1 ~~i~vk~~~-g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPK-DK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCC-CC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 468999998 87 489999999999999999999999999999999999999999999999999999999864
No 40
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.65 E-value=7.5e-16 Score=108.09 Aligned_cols=69 Identities=32% Similarity=0.513 Sum_probs=65.8
Q ss_pred EeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 67 KTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 67 k~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
|+++ |+.+++++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.++++|+++++++
T Consensus 1 k~~~-g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLS-GKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETT-SEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCC-CcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 5677 99999999999999999999999999999999999999999999999999999999999998763
No 41
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=6.4e-17 Score=126.84 Aligned_cols=72 Identities=46% Similarity=0.653 Sum_probs=69.9
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|.|+|++++|+++.+++.+++||..+|++|++++|||+++|||+|.|+.|+|++||+||+|+..+|||++++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999999999999875
No 42
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.64 E-value=6.9e-16 Score=108.86 Aligned_cols=68 Identities=25% Similarity=0.418 Sum_probs=63.9
Q ss_pred EEEEeC-CCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecc-ccccccccCCCCeEEEE
Q 023198 64 LYFKTP-SNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY-ITLDVLNINNEDTLQMI 132 (286)
Q Consensus 64 i~Vk~~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~-~tL~~~~I~~~s~i~l~ 132 (286)
|+|++. . |+++.+++++++||+++|++|++++|+|+++|+|+|+|++|+|+ .+|++|+|++++++++.
T Consensus 1 l~v~~~~~-g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARS-ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCC-CCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 478999 7 99999999999999999999999999999999999999999987 68999999999999873
No 43
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.64 E-value=8e-16 Score=110.07 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=65.2
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
|+++++++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++++++++|
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999998775
No 44
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.61 E-value=1.7e-15 Score=107.77 Aligned_cols=71 Identities=23% Similarity=0.229 Sum_probs=64.2
Q ss_pred eEEEEEeecceE--EEeecCCcCcHHHHHHHHHHHhC--CCCCceEEEecCeEcCCCCccccCC--CCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRY--IILEVAKFDTVRDVKDKLFREIG--QAPDSQRLVFKRQQLEDDRNLASYK--IVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~--~~l~v~~~~tV~~lK~~I~~~~g--i~~~~q~L~~~g~~L~d~~tL~~y~--I~~~~~l~l~~ 283 (286)
+.++||+++|++ +.+++++++||++||++|++..+ .|+++|||+|+|+.|+|+.||++|. ++.|.|+||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 678999999998 56666899999999999999875 5579999999999999999999996 99999999984
No 45
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.60 E-value=2.9e-15 Score=105.68 Aligned_cols=69 Identities=28% Similarity=0.296 Sum_probs=65.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
+.|.||+. |+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|.|+.+|++|||++|++|+++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 46889985 8999999999999999999999999999999999999999999999999999999999986
No 46
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.60 E-value=2.2e-15 Score=107.76 Aligned_cols=65 Identities=28% Similarity=0.427 Sum_probs=62.7
Q ss_pred ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 220 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999865
No 47
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.59 E-value=4.6e-15 Score=105.34 Aligned_cols=69 Identities=25% Similarity=0.320 Sum_probs=64.5
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe---cCeEcCCCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF---KRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~---~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
+.|.|| ++|+++.+++++++||++||++|++++|+|+++|+|+| +|+.+.|+.+|++|+|++|+.|+|+
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 357788 48899999999999999999999999999999999996 9999999999999999999999986
No 48
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.58 E-value=1.2e-15 Score=107.05 Aligned_cols=54 Identities=28% Similarity=0.379 Sum_probs=49.8
Q ss_pred CcchHHHHHHHHhhchhcCCC-CCCCeEEecCcccccCCcccccCCCCCceeeee
Q 023198 5 KTEKIEKLKLRIHAKVEEEIL-EDLPELFYAGQQLENGLTVIDYGIPNNSVIHND 58 (286)
Q Consensus 5 ~~dtv~~vK~~i~~~~~~~i~-~~~q~l~~~g~~L~d~~~l~~y~i~~~s~l~l~ 58 (286)
.++||.++|++|++++++|+| +++|+|+|+|++|+|++||++|+|..|++|||+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv 73 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHIL 73 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEE
Confidence 579999999999999555675 999999999999999999999999999999984
No 49
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.58 E-value=1.5e-14 Score=106.09 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=75.5
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
...|.|+|+..+ |+.+.++|.+++|++.||++++++.|+|+++|+|+|+|++|+++.|+++|++.++++|++++++.||
T Consensus 9 ~~~i~I~v~~~~-g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQD-GNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCC-CCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 347899999998 9999999999999999999999999999999999999999999999999999999999999998875
No 50
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.57 E-value=9e-15 Score=104.11 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=63.2
Q ss_pred eEEEEEeCCCCcEE--EEEEcCCccHHHHHHHHHhhhC--CCCccEEEEECCEEeeccccccccc--cCCCCeEEEEe
Q 023198 62 MKLYFKTPSNEKTF--ELKANRSDTIENIKFIIEVREG--IPVHEYDIYYGGKLIESYITLDVLN--INNEDTLQMIS 133 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~--~l~v~~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~D~~tL~~~~--I~~~s~i~l~~ 133 (286)
+.++||+++ |+++ .+++++++||+++|++|++..+ .|+++|||+|+|+.|+|+.||++|. +.++.++||+.
T Consensus 2 i~l~IK~~~-~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPN-QKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCC-CCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 678999999 9984 5555899999999999999874 5579999999999999999999996 99999999985
No 51
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.54 E-value=2.7e-14 Score=101.36 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=64.5
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEE---CCEEeeccccccccccCCCCeEEEE
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYY---GGKLIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
|.|.|++. |+++.+++++++||++||++|++.+|+|+++|+|+| .|+.+.|+.+|++|+|.+|+.+.|+
T Consensus 1 ~~i~vk~~--g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKWG--GQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEEC--CEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 46788875 799999999999999999999999999999999996 8999999999999999999999886
No 52
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.53 E-value=2.7e-14 Score=100.65 Aligned_cols=69 Identities=14% Similarity=0.320 Sum_probs=65.3
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
++|+||+. |+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++++++
T Consensus 1 i~i~vk~~--g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG--GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC--CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 47889985 7999999999999999999999999999999999999999999999999999999999876
No 53
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.51 E-value=8.4e-14 Score=102.15 Aligned_cols=72 Identities=13% Similarity=0.256 Sum_probs=69.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
++|+|++.+|+++.++|.+++|++.||++++++.|+|+++|+|+|+|+.|+++.|+.+|++++|++|++..+
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 889999999999999999999999999999999999999999999999999999999999999999999764
No 54
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.49 E-value=3.2e-14 Score=99.86 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=50.4
Q ss_pred CCcCcHHHHHHHHHHHh--CCC-CCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 230 AKFDTVRDVKDKLFREI--GQA-PDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 230 ~~~~tV~~lK~~I~~~~--gi~-~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+.++||++||++|+++. |++ +++|||+|+|+.|+|++||++|||++|++|||+..
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 35889999999999995 575 99999999999999999999999999999999863
No 55
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.48 E-value=9.3e-14 Score=98.75 Aligned_cols=65 Identities=32% Similarity=0.255 Sum_probs=59.4
Q ss_pred EeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcC-CCCccccCCCC-CCCEEEEEc
Q 023198 218 KLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLE-DDRNLASYKIV-NESIVNLTD 283 (286)
Q Consensus 218 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~-d~~tL~~y~I~-~~~~l~l~~ 283 (286)
|...|.++++++++++||++||.+|++++|+|+++|+| |+|+.|. |+.+|++||++ +|++++|..
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 45578899999999999999999999999999999999 9999885 77999999998 889999853
No 56
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.47 E-value=1.4e-13 Score=94.72 Aligned_cols=64 Identities=42% Similarity=0.579 Sum_probs=60.8
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNES 277 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~ 277 (286)
|+|+||+.+ +++.+++++++||++||++|+.++|+|++.|+|+|+|+.|.|+.+|++||+++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 578999988 7899999999999999999999999999999999999999999999999999885
No 57
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.45 E-value=2.7e-13 Score=96.40 Aligned_cols=64 Identities=19% Similarity=0.105 Sum_probs=58.4
Q ss_pred eCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEee-ccccccccccC-CCCeEEEEe
Q 023198 68 TPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIE-SYITLDVLNIN-NEDTLQMIS 133 (286)
Q Consensus 68 ~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~-D~~tL~~~~I~-~~s~i~l~~ 133 (286)
... |.++++++++++||++||++|++++|+|+++|+| |+|+.|. |+.+|++|++. +|+++++.+
T Consensus 9 ~~~-~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSH-TVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccC-CCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 344 8999999999999999999999999999999999 9999985 77999999999 889998763
No 58
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.42 E-value=5.5e-13 Score=91.67 Aligned_cols=64 Identities=34% Similarity=0.460 Sum_probs=60.5
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCC
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNED 127 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s 127 (286)
|+|+|++.+ +++.+++++++||++||++|+..+|+|+++|+|+|+|+.|.|+.+|++|++.+|+
T Consensus 1 ~~i~vk~~~--~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD--GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC--ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999986 5899999999999999999999999999999999999999999999999999875
No 59
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=6.2e-13 Score=121.90 Aligned_cols=72 Identities=24% Similarity=0.389 Sum_probs=69.2
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhC---CCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG---QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---i~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|.|+||++.|+++.++|++++||.+||++|++..| +|+++|+|+|+|+.|+|+++|.+|+|+++++|+++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999998765
No 60
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.39 E-value=8.3e-13 Score=121.10 Aligned_cols=73 Identities=26% Similarity=0.476 Sum_probs=70.2
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhC---CCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREG---IPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~ 135 (286)
|+|+||++. |+++.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|+|+++++|++++..
T Consensus 1 MkItVKtl~-g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQ-QQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCC-CCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 789999999 99999999999999999999999998 99999999999999999999999999999999988775
No 61
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.37 E-value=7.3e-13 Score=99.26 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=65.2
Q ss_pred ceEEEEEeCCCCcEE-EEEEcCCccHHHHHHHHHhhh-----CCC--CccEEEEECCEEeeccccccccc------cCCC
Q 023198 61 VMKLYFKTPSNEKTF-ELKANRSDTIENIKFIIEVRE-----GIP--VHEYDIYYGGKLIESYITLDVLN------INNE 126 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~-~l~v~~~~tV~~lK~~I~~~~-----gip--~~~q~L~~~g~~L~D~~tL~~~~------I~~~ 126 (286)
.+.|.+|... |..+ +..+.+++||++||++|++.+ |+| +++|+|+|+|+.|+|++||++|+ +...
T Consensus 4 ~~e~kfrl~d-g~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 4 QIEIKFRLYD-GSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred cEEEEEEccC-CCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 4667888888 7555 677889999999999999544 556 99999999999999999999999 7778
Q ss_pred CeEEEEeeccc
Q 023198 127 DTLQMISVPKE 137 (286)
Q Consensus 127 s~i~l~~~~~~ 137 (286)
+|+|+++++..
T Consensus 83 ~TmHvvlr~~~ 93 (113)
T cd01814 83 ITMHVVVQPPL 93 (113)
T ss_pred eEEEEEecCCC
Confidence 99999998764
No 62
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.35 E-value=6.5e-13 Score=96.54 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCCCCcchHHHHHHHHhhchhcCCCCCCCeEEecCccccc-CCcccccCCCCCceeee
Q 023198 1 MKVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLEN-GLTVIDYGIPNNSVIHN 57 (286)
Q Consensus 1 l~v~~~dtv~~vK~~i~~~~~~~i~~~~q~l~~~g~~L~d-~~~l~~y~i~~~s~l~l 57 (286)
|+|++++||+++|.+|+++ +++||++|+|+|+|+.|.| .+||++|+|.++|+|+|
T Consensus 19 L~V~~~~TVg~LK~lImQ~--f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~L 74 (107)
T cd01795 19 LLVSANQTLKELKIQIMHA--FSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILL 74 (107)
T ss_pred EEeCccccHHHHHHHHHHH--hcCCcccceeeecCceeccCCccHHhcCCCCCCEEEE
Confidence 5799999999999999999 9999999999999999955 58999999999999998
No 63
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.35 E-value=1.1e-12 Score=98.35 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=63.0
Q ss_pred eEEEEEeecceEE-EeecCCcCcHHHHHHHHH-----HHhCCC--CCceEEEecCeEcCCCCccccCC------CCCCCE
Q 023198 213 HSIFVKLLNGRYI-ILEVAKFDTVRDVKDKLF-----REIGQA--PDSQRLVFKRQQLEDDRNLASYK------IVNESI 278 (286)
Q Consensus 213 ~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~-----~~~gi~--~~~q~L~~~g~~L~d~~tL~~y~------I~~~~~ 278 (286)
+.|.++..+|..+ ...+.+++||++||++|+ +++|+| +++|+|+|+|+.|+|++||++|+ +....|
T Consensus 5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T 84 (113)
T cd01814 5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT 84 (113)
T ss_pred EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE
Confidence 4566677788665 678889999999999999 455566 99999999999999999999999 788899
Q ss_pred EEEEcCC
Q 023198 279 VNLTDLG 285 (286)
Q Consensus 279 l~l~~~~ 285 (286)
+|++.|.
T Consensus 85 mHvvlr~ 91 (113)
T cd01814 85 MHVVVQP 91 (113)
T ss_pred EEEEecC
Confidence 9999885
No 64
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.33 E-value=4.2e-12 Score=88.56 Aligned_cols=67 Identities=37% Similarity=0.567 Sum_probs=63.6
Q ss_pred EEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 217 VKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 217 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
|+..+|+.+.+.++++.||++||++|+...|+|++.|+|+|+|+.|+|+.+|.+|++.+|++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5667899999999999999999999999999999999999999999999999999999999999875
No 65
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.24 E-value=2e-11 Score=88.82 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=57.3
Q ss_pred cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeec-cccccccccCCCCeEEEEeec
Q 023198 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIES-YITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 73 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D-~~tL~~~~I~~~s~i~l~~~~ 135 (286)
+..+++|++++||.+||..|+..+++||.+|+|+|+|+.|.| .+||++||+..+|++.|.++.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 456788999999999999999999999999999999999965 679999999999999987653
No 66
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.22 E-value=4.2e-11 Score=83.43 Aligned_cols=67 Identities=33% Similarity=0.549 Sum_probs=62.9
Q ss_pred EEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198 66 FKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 66 Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~ 133 (286)
|+..+ |+.+.+++.++.||++||++|+...|+|+++|+|+|+|+.|+|..+|++|++.+++++++..
T Consensus 2 v~~~~-~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLT-GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccC-CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 56677 99999999999999999999999999999999999999999999999999999999998763
No 67
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.19 E-value=8.5e-11 Score=82.99 Aligned_cols=70 Identities=23% Similarity=0.379 Sum_probs=65.4
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCC-CceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAP-DSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
|++.|+..+|+.+.+.|.+++++..|++..+++.|+|+ +.++|+|.|+.|+++.|+++|++++|++|++.
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 57889999999999999999999999999999999999 99999999999999999999999999999985
No 68
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.18 E-value=2.9e-11 Score=111.42 Aligned_cols=71 Identities=25% Similarity=0.336 Sum_probs=67.5
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+.|.||+.+. .+.+.|....||.+||+.|+.++++++++++|+|.||.|+|+.||..|||++|.||||+..
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEec
Confidence 6788999887 7889999999999999999999999999999999999999999999999999999999865
No 69
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.16 E-value=6.2e-11 Score=104.06 Aligned_cols=74 Identities=24% Similarity=0.442 Sum_probs=70.6
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhC--CCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREG--IPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
|.|+||++. |.+|++++.|++||.++|++|+...| .|+.+|+|+|+|+.|.|+.++.+|++.+++.+.+++...
T Consensus 1 m~lt~KtL~-q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLK-QQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeecc-CceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 689999999 99999999999999999999999998 999999999999999999999999999999888887755
No 70
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.13 E-value=7.7e-11 Score=108.67 Aligned_cols=74 Identities=20% Similarity=0.448 Sum_probs=70.1
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
.++|.||+.+ + .+.+.|..+.||.++|+.|....++|+++++|||+||.|+|+.||..|||++|.||||+.+..
T Consensus 15 ~irV~Vkt~~-d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPK-D-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCC-c-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 5789999998 5 889999999999999999999999999999999999999999999999999999999998764
No 71
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.13 E-value=3.4e-10 Score=79.87 Aligned_cols=70 Identities=20% Similarity=0.370 Sum_probs=65.4
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCC-ccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPV-HEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
|+|+|+..+ |+.+.+.|.+++++..|++.+.++.|+|+ +..+|+|+|+.|+++.|+++|++.+|++|++.
T Consensus 1 I~i~v~~~~-~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQD-GKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETT-SEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 678999998 99999999999999999999999999999 99999999999999999999999999999875
No 72
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.06 E-value=2.5e-10 Score=100.33 Aligned_cols=71 Identities=27% Similarity=0.419 Sum_probs=67.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhC--CCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG--QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g--i~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
|.++||++.|.+|++++.|++||.++|++|+...| +|+++|+|+|+|+.|.|+.|+.+|+|+.++.|-+++
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMl 73 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVML 73 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEE
Confidence 57899999999999999999999999999999999 999999999999999999999999999888776654
No 73
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.06 E-value=1.4e-09 Score=76.04 Aligned_cols=72 Identities=38% Similarity=0.530 Sum_probs=67.9
Q ss_pred EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
+++++.. |+++++++.++++|+.+|.+|+...|+|+++|++.+.|+.|+|+.++++|+|..++++++..+++
T Consensus 2 ~~~~~~~-gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLD-GKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecC-CCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 5677877 99999999999999999999999999999999999999999999999999999999999987765
No 74
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.02 E-value=1.4e-09 Score=76.02 Aligned_cols=70 Identities=44% Similarity=0.591 Sum_probs=66.0
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+++++..|+++.+++.++.+++.+|.+|+...|+|++.|++.++|+.|+|+.++.+|+|..++++++..+
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~ 71 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLS 71 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEe
Confidence 4667788999999999999999999999999999999999999999999999999999999999998764
No 75
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.02 E-value=2.2e-09 Score=78.07 Aligned_cols=71 Identities=23% Similarity=0.332 Sum_probs=58.5
Q ss_pred EEEEEee-cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEE-EecCe-----Ec-CCCCccccCCCCCCCEEEEEcC
Q 023198 214 SIFVKLL-NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRL-VFKRQ-----QL-EDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 214 ~i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L-~~~g~-----~L-~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
.+.|+.. +......+++++.||++||++++..+|+|+..|+| +|.|. .| +|..+|.+|++++|++||+.+.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 3444442 23445567999999999999999999999999999 47887 45 6888999999999999999874
No 76
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.97 E-value=2e-09 Score=80.47 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=61.9
Q ss_pred EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecccccccccc-------CCCCeEEEEeecc
Q 023198 64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNI-------NNEDTLQMISVPK 136 (286)
Q Consensus 64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I-------~~~s~i~l~~~~~ 136 (286)
+|++...+.-++.+++.++.||.+||++|+.....||+.|+|+-.+..|+|++||+|||+ +..+++-|.++..
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~ 82 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSS 82 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecC
Confidence 344433324688999999999999999999999999999999977788999999999999 6688888887753
No 77
>PLN02560 enoyl-CoA reductase
Probab=98.96 E-value=1.8e-09 Score=96.90 Aligned_cols=73 Identities=32% Similarity=0.438 Sum_probs=66.0
Q ss_pred eEEEEEeecceEE---EeecCCcCcHHHHHHHHHHHhCC-CCCceEEEec-------CeEcCCCCccccCCCCCCCEEEE
Q 023198 213 HSIFVKLLNGRYI---ILEVAKFDTVRDVKDKLFREIGQ-APDSQRLVFK-------RQQLEDDRNLASYKIVNESIVNL 281 (286)
Q Consensus 213 ~~i~vk~~~g~~~---~l~v~~~~tV~~lK~~I~~~~gi-~~~~q~L~~~-------g~~L~d~~tL~~y~I~~~~~l~l 281 (286)
|.|.|+..+|+.+ +++++++.||++||++|+++.++ ++++|||.+. |+.|+|+++|++||+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 5678888889887 79999999999999999999986 8999999972 34889999999999999999999
Q ss_pred EcCC
Q 023198 282 TDLG 285 (286)
Q Consensus 282 ~~~~ 285 (286)
-+.|
T Consensus 81 kDLG 84 (308)
T PLN02560 81 KDLG 84 (308)
T ss_pred EeCC
Confidence 9988
No 78
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.93 E-value=7.7e-09 Score=75.22 Aligned_cols=71 Identities=18% Similarity=0.339 Sum_probs=58.2
Q ss_pred EEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEE-EECCE-----Ee-eccccccccccCCCCeEEEEe
Q 023198 63 KLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDI-YYGGK-----LI-ESYITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 63 ~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L-~~~g~-----~L-~D~~tL~~~~I~~~s~i~l~~ 133 (286)
.|+|............+.++.||.+||++++..+|+||..|+| +|.|+ .| +|..+|++|++.+|.+||++-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 4555554314455566999999999999999999999999999 58887 45 678899999999999999864
No 79
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.81 E-value=1.6e-08 Score=74.02 Aligned_cols=71 Identities=31% Similarity=0.449 Sum_probs=55.9
Q ss_pred EEEEEeecc--eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEec----C---eEc-CCCCccccCCCCCCCEEEEEc
Q 023198 214 SIFVKLLNG--RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFK----R---QQL-EDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 214 ~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~----g---~~L-~d~~tL~~y~I~~~~~l~l~~ 283 (286)
.+.|..... ......++++.||++||.+++..+|+|++.|+|.+. + ..+ +|..+|.+||+++|.+||+.+
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 455554443 377889999999999999999999999999999765 2 223 478899999999999999986
Q ss_pred C
Q 023198 284 L 284 (286)
Q Consensus 284 ~ 284 (286)
.
T Consensus 83 ~ 83 (87)
T PF14560_consen 83 T 83 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 80
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.76 E-value=2.1e-08 Score=75.01 Aligned_cols=69 Identities=22% Similarity=0.370 Sum_probs=59.6
Q ss_pred EEeecCC-C-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCcccccccc-------CCCceEEEEee
Q 023198 141 IFVQTPT-S-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDI-------KENEVLQIIRH 210 (286)
Q Consensus 141 I~V~~~~-g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i-------~~~~~i~l~~~ 210 (286)
+|+.... . ++.++++++.||.+||++|+. -...||+.|+|+-.+..|+|++||+||++ +..+++-|.++
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~ieg-I~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEG-ILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHH-HhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 4444333 3 888999999999999999999 99999999999977789999999999999 66888888776
No 81
>PLN02560 enoyl-CoA reductase
Probab=98.71 E-value=3.3e-08 Score=88.77 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=61.7
Q ss_pred eEEEEEeCCCCcEE---EEEEcCCccHHHHHHHHHhhhCC-CCccEEEEEC---C----EEeeccccccccccCCCCeEE
Q 023198 62 MKLYFKTPSNEKTF---ELKANRSDTIENIKFIIEVREGI-PVHEYDIYYG---G----KLIESYITLDVLNINNEDTLQ 130 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~---~l~v~~~~tV~~lK~~I~~~~gi-p~~~q~L~~~---g----~~L~D~~tL~~~~I~~~s~i~ 130 (286)
|.|.|+..+ |+.+ ++++++++||++||++|+++.++ ++++|||.+. | ..|+|+++|++||+.+|++++
T Consensus 1 M~I~Vk~~~-Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 1 MKVTVVSRS-GREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVV 79 (308)
T ss_pred CEEEEEcCC-CCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEE
Confidence 678999887 8887 79999999999999999999986 8999999973 3 378999999999999999877
Q ss_pred EE
Q 023198 131 MI 132 (286)
Q Consensus 131 l~ 132 (286)
+-
T Consensus 80 ~k 81 (308)
T PLN02560 80 FK 81 (308)
T ss_pred EE
Confidence 64
No 82
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.1e-08 Score=98.24 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=69.9
Q ss_pred EEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 63 KLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 63 ~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
.+.||+++ .++.++.+...+||.++|..|.++..|+.+.|||||.|+.|.|++++++|+| +|.+|||+-|++.
T Consensus 4 ~v~vktld-~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 4 NVLVKTLD-SRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred ceeeeecc-cceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 47899999 9999999999999999999999999999999999999999999999999999 9999999999764
No 83
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.68 E-value=2.6e-07 Score=70.45 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=56.5
Q ss_pred ceEEEEEeCCCCc-EEEEEEcCCccHHHHHHHHHhhh--CC-----CCccEEEEECCEEeeccccccccccCCCC-----
Q 023198 61 VMKLYFKTPSNEK-TFELKANRSDTIENIKFIIEVRE--GI-----PVHEYDIYYGGKLIESYITLDVLNINNED----- 127 (286)
Q Consensus 61 ~~~i~Vk~~~~g~-~~~l~v~~~~tV~~lK~~I~~~~--gi-----p~~~q~L~~~g~~L~D~~tL~~~~I~~~s----- 127 (286)
.+.+.++..+ |+ +.++..++++||++||+.|...+ ++ .++..||+|.|+.|+|+.||++|.+..+.
T Consensus 2 ~i~lkf~l~~-G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 2 KIELKFRLAD-GKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp SEEEEEEETT-S-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred eEEEEEEEeC-CCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence 3566777778 98 88999999999999999999865 22 24779999999999999999999988766
Q ss_pred -eEEEEeecc
Q 023198 128 -TLQMISVPK 136 (286)
Q Consensus 128 -~i~l~~~~~ 136 (286)
++|+++++.
T Consensus 81 ~vmHlvvrp~ 90 (111)
T PF13881_consen 81 TVMHLVVRPN 90 (111)
T ss_dssp EEEEEEE-SS
T ss_pred EEEEEEecCC
Confidence 566666654
No 84
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.8e-08 Score=98.59 Aligned_cols=71 Identities=21% Similarity=0.482 Sum_probs=68.5
Q ss_pred EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
++.||+++.++.++.+...+||.++|..|.++.+|+.+.|||+|.|+.|.|++++.+|+| +|.+|||+.|.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverp 74 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERP 74 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccC
Confidence 478999999999999999999999999999999999999999999999999999999999 99999999874
No 85
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.66 E-value=8.2e-08 Score=68.63 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=49.8
Q ss_pred CCcCcHHHHHHHHHHHhC-CCCCceEEE--ecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 230 AKFDTVRDVKDKLFREIG-QAPDSQRLV--FKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 230 ~~~~tV~~lK~~I~~~~g-i~~~~q~L~--~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+++.||++||..|++..+ +++++|||. +.|+.|.|+.+|.+||+++|++||+-++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyvKDL 77 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYVRDL 77 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEEeeC
Confidence 588999999999999976 589999995 8999999999999999999999998653
No 86
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.66 E-value=1.2e-07 Score=69.43 Aligned_cols=72 Identities=18% Similarity=0.342 Sum_probs=55.9
Q ss_pred eEEEEEeCCC-CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEEC----CE---Ee-eccccccccccCCCCeEEEE
Q 023198 62 MKLYFKTPSN-EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYG----GK---LI-ESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 62 ~~i~Vk~~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~----g~---~L-~D~~tL~~~~I~~~s~i~l~ 132 (286)
+.|+|..... +......+.++.||.+||.+++..+|+|++.|+|.+. +. .+ +|..+|.+||+.+|.+|++.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 3566665541 2488889999999999999999999999999999764 21 23 56889999999999988876
Q ss_pred e
Q 023198 133 S 133 (286)
Q Consensus 133 ~ 133 (286)
-
T Consensus 82 D 82 (87)
T PF14560_consen 82 D 82 (87)
T ss_dssp E
T ss_pred e
Confidence 3
No 87
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.57 E-value=3.5e-07 Score=63.00 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=62.0
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEEC---CE--EeeccccccccccCCCCeEEEEee
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYG---GK--LIESYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~---g~--~L~D~~tL~~~~I~~~s~i~l~~~ 134 (286)
++|+|+... +..+++.|+|..+|..+|++|+...|++- +|||.|. |+ .|.+..+|++|||.....|.+...
T Consensus 1 iqVtV~q~g-~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTG-YSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecC-CCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 478999988 89999999999999999999999999996 9999885 32 479999999999998887776643
No 88
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.55 E-value=4.1e-07 Score=69.39 Aligned_cols=72 Identities=21% Similarity=0.413 Sum_probs=54.0
Q ss_pred EEEEEeecce-EEEeecCCcCcHHHHHHHHHHHhC-------CCCCceEEEecCeEcCCCCccccCCCCCCC------EE
Q 023198 214 SIFVKLLNGR-YIILEVAKFDTVRDVKDKLFREIG-------QAPDSQRLVFKRQQLEDDRNLASYKIVNES------IV 279 (286)
Q Consensus 214 ~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~g-------i~~~~q~L~~~g~~L~d~~tL~~y~I~~~~------~l 279 (286)
.+.++..+|+ ...+..++++||++||+.|.+.+. ..++..||+|.|+.|+|+.||.++++..|+ ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 3445556888 778899999999999999987652 245678999999999999999999998766 68
Q ss_pred EEEcCC
Q 023198 280 NLTDLG 285 (286)
Q Consensus 280 ~l~~~~ 285 (286)
||+.++
T Consensus 84 Hlvvrp 89 (111)
T PF13881_consen 84 HLVVRP 89 (111)
T ss_dssp EEEE-S
T ss_pred EEEecC
Confidence 888764
No 89
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.46 E-value=8.9e-07 Score=59.03 Aligned_cols=66 Identities=32% Similarity=0.473 Sum_probs=60.5
Q ss_pred EeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 218 KLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 218 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+..+|....+.+.+..|+++||.+++++.|+++..|.|+++|..+.+...+.+|++..++++++..
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 334678888999999999999999999999999999999999999999988999999999999875
No 90
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.40 E-value=6.2e-07 Score=64.39 Aligned_cols=70 Identities=23% Similarity=0.345 Sum_probs=43.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe---cCeEc--CCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF---KRQQL--EDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~---~g~~L--~d~~tL~~y~I~~~~~l~l~~ 283 (286)
|.+.|+..+| +..+++++++|+.+|+++|++..++|.+.|.|.. ....+ .++.||+++||+.||.|+|..
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~~ 79 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLKP 79 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE---
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEec
Confidence 6677888776 5568999999999999999999999999998853 22345 478899999999999999853
No 91
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.39 E-value=1.4e-06 Score=60.08 Aligned_cols=69 Identities=29% Similarity=0.396 Sum_probs=60.3
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe-----cCeEcCCCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF-----KRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-----~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
+++.|+-+++...++.|+|..+|..+|++|....|++- +|||.| +...|.+.+||++|||=....|.++
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~ll 74 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLL 74 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEE
Confidence 46889988889999999999999999999999999987 999988 3457789999999999777766664
No 92
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.25 E-value=1.5e-06 Score=62.06 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=46.4
Q ss_pred CCcchHHHHHHHHhhchhcC-CCCCCCeEE--ecCcccccCCcccccCCCCCceeee
Q 023198 4 KKTEKIEKLKLRIHAKVEEE-ILEDLPELF--YAGQQLENGLTVIDYGIPNNSVIHN 57 (286)
Q Consensus 4 ~~~dtv~~vK~~i~~~~~~~-i~~~~q~l~--~~g~~L~d~~~l~~y~i~~~s~l~l 57 (286)
.++.||.++|..|... .+ +|+++|+|. +.|+.|.|+.+|++|++.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~--~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKS--SPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHH--cCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 4788999999999887 65 689999995 8899999999999999999999885
No 93
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.20 E-value=2.8e-06 Score=60.98 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=44.6
Q ss_pred ceeEEeecCCCeEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeC---Ceee--cCCccccccccCCCceEEEE
Q 023198 138 LQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRG---GEQL--QNLKTLAYYDIKENEVLQII 208 (286)
Q Consensus 138 ~~~I~V~~~~g~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~---g~~L--~d~~tL~~y~i~~~~~i~l~ 208 (286)
.|-|.|+...|...+++++++|+.+|+++|.+ ..++|.+.|.|..+ ...+ .++.++++++++.|+-|+|.
T Consensus 4 ~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~-~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 4 SMILRVRSKDGMKRIEVSPSSTLSDLKEKISE-QLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp --EEEEE-SSEEEEEEE-TTSBHHHHHHHHHH-HS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred cEEEEEECCCCCEEEEcCCcccHHHHHHHHHH-HcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 46778888888888899999999999999999 99999998888642 2244 57899999999999999874
No 94
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.20 E-value=9.3e-06 Score=53.90 Aligned_cols=63 Identities=22% Similarity=0.406 Sum_probs=58.2
Q ss_pred CCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198 69 PSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 69 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
.+ |....+.+.++.|+.++|+.+..+.|++++.+.|+++|..+.+...+.+|++..++.+.+.
T Consensus 5 ~~-~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 5 ND-GKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred cC-CCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 35 8888999999999999999999999999999999999999999988889999999998875
No 95
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.4e-06 Score=74.92 Aligned_cols=60 Identities=17% Similarity=0.336 Sum_probs=56.8
Q ss_pred eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 223 RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 223 ~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
..++++|+.+.+|.+||+.++.+.|+|+++.+++|.|++|.++-|+..+.+...+.+|++
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 457889999999999999999999999999999999999999999999999999999887
No 96
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=6.7e-07 Score=59.72 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=59.6
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEE
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l 281 (286)
+.++..-|+...+.+.+.+||+++|+.|++++|-.++...|--.+..++|+-+|+||.|.+|-.+.+
T Consensus 4 v~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 4 VVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred ehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 4445566899999999999999999999999999999988887788899999999999999987765
No 97
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=7.4e-06 Score=71.87 Aligned_cols=63 Identities=14% Similarity=0.403 Sum_probs=58.0
Q ss_pred cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE-eec
Q 023198 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI-SVP 135 (286)
Q Consensus 73 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~-~~~ 135 (286)
..++++|+.+.+|.+||+.++...|+|+++.+++|+|++|.|+.++..+.+...|.++.+ +||
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 567889999999999999999999999999999999999999999999999988888876 555
No 98
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.2e-05 Score=74.26 Aligned_cols=70 Identities=21% Similarity=0.351 Sum_probs=64.4
Q ss_pred eEEEEEeecceEEEee-cCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIILE-VAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~-v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+.+.|| +.|+.+.++ ++.++|+..+|.++.+.+|+||++|+++.+|..+.|+--+...+|++|.+++|+-
T Consensus 4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence 356777 588999887 9999999999999999999999999999999999999999999999999999874
No 99
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3e-06 Score=56.63 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=59.6
Q ss_pred EEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198 63 KLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 63 ~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
++.++..- |+.+.+..+++|||+++|+.|..++|..++...|--.+..+.|+-+|++|.|.+|-.+.+.
T Consensus 3 ev~~nDrL-GKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRL-GKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhc-CceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 44555555 8999999999999999999999999999988877666777899999999999999877764
No 100
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.88 E-value=1.3e-05 Score=57.94 Aligned_cols=61 Identities=23% Similarity=0.190 Sum_probs=51.4
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC--EEeeccccccccccC
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG--KLIESYITLDVLNIN 124 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g--~~L~D~~tL~~~~I~ 124 (286)
|.+.||.. ..++.++++++.||.+||.+++....-|++.|+|+.-. +.|+|++||+|||..
T Consensus 3 ~f~~VrR~--kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRRH--KTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeeec--ceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 34555554 47889999999999999999999999999999998743 468999999999765
No 101
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.69 E-value=0.00013 Score=50.03 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=47.4
Q ss_pred ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEE
Q 023198 220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281 (286)
Q Consensus 220 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l 281 (286)
.+++.+.+.+.|++++.++-++.++++|+.++...|.|+++.++-+.++.-.|+.+|+.+.|
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 57888999999999999999999999999999999999999999999999999999999875
No 102
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00015 Score=67.21 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=66.5
Q ss_pred ceEEEEEeCCCCcEEEEE-EcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 61 VMKLYFKTPSNEKTFELK-ANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
...|.||+. |+.++++ ++.++|+..+|+++...+|+||++|+++..|..+.|+-.+....|+++.+++|+....
T Consensus 3 ~~~v~VKW~--gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 3 SDTVIVKWG--GKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred cceEeeeec--CccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 345788886 6888888 9999999999999999999999999999999999999888889999999999986543
No 103
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00074 Score=49.65 Aligned_cols=71 Identities=13% Similarity=0.310 Sum_probs=65.4
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+++.|+.-.+.+..+.|..+++...|++.-+++.|++.+..|+.|+|+.+.+..|=.+.+.++|+.|.+..
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 56777776777888999999999999999999999999999999999999999999999999999998764
No 104
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.50 E-value=0.00021 Score=51.84 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=46.7
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe-c-CeEcCCCCccccCCCC
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF-K-RQQLEDDRNLASYKIV 274 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-~-g~~L~d~~tL~~y~I~ 274 (286)
...++-+...++.||-+||.+++....-|++.|||.- . .+.|+|++||+++|..
T Consensus 10 ~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 10 HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 3456778999999999999999999999999999965 3 3688999999999763
No 105
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.34 E-value=0.0018 Score=46.55 Aligned_cols=70 Identities=23% Similarity=0.342 Sum_probs=60.9
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEE--ecCeEcCCC--CccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLV--FKRQQLEDD--RNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~--~~g~~L~d~--~tL~~y~I~~~~~l~l~ 282 (286)
..|.||.++|+.+.-...+++|+.+|..-|......+... ..|+ |..+.+.+. .||.+.|+.++++|++.
T Consensus 7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 5678899999999999999999999999999888877765 7775 788888755 59999999999999875
No 106
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.32 E-value=0.00054 Score=49.04 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=48.6
Q ss_pred EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCC------ceEEE-ecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPD------SQRLV-FKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~------~q~L~-~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
.|.|...+|+.+-+.++.+.+|++|...+.+..+.+.. ...|. -+|..|+++.||+++||.+|++++|.
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence 34555544689999999999999999999998886432 24555 68999999999999999999999874
No 107
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0042 Score=45.74 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=67.9
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
+.+.|+--. +.++.+.|..+.+...|+....++.|++.+..|.+|+|+.+....|-++.+..+|+.|.++....||
T Consensus 21 i~LKV~gqd-~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 21 INLKVKGQD-GSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred EEEEEecCC-CCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 455666655 7888999999999999999999999999999999999999999999999999999999988766655
No 108
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.11 E-value=0.0036 Score=43.34 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=59.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCC-----CceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAP-----DSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-----~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
+++-.+..+|.++-+.++...++..|-..+.+.+.+.. .+.+.+-+++.|.++..|.+|+|.+|+.+.++
T Consensus 7 VTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~LeiL 81 (81)
T COG5417 7 VTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEIL 81 (81)
T ss_pred EEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEeC
Confidence 45666778899999999999999999988877766422 45678899999999999999999999998763
No 109
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.09 E-value=0.0021 Score=44.07 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=46.2
Q ss_pred cCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEE
Q 023198 145 TPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQI 207 (286)
Q Consensus 145 ~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l 207 (286)
..++ +..+.+.++.++.+|-++... +.|+.+++..|.|+++.++-+-+++--|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~-k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACK-KFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHH-HTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHH-HcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 3456 888999999999999999999 9999999999999999999999999999999998875
No 110
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.05 E-value=0.0046 Score=44.40 Aligned_cols=71 Identities=13% Similarity=0.217 Sum_probs=62.5
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcC---CCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLE---DDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~---d~~tL~~y~I~~~~~l~l~~~ 284 (286)
-.|.|+.++|+...-....++++.+|..-++. .|.+++.+.|+ |..+.+. .+.||.+.|+.+..+|.+-.|
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 46889999999999999999999999999998 68899999996 7777774 347999999999999999876
No 111
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.03 E-value=0.004 Score=44.54 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=59.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcCC---CCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLED---DRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~d---~~tL~~y~I~~~~~l~l~ 282 (286)
..|.||.++|+.+.-...+++|+++|.+-|....+.......|+ |..+.+.+ +.||.+.|+.++++|.+-
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence 46788999999999999999999999999977677766677774 77888864 479999999999998774
No 112
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.03 E-value=0.0037 Score=50.53 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=58.0
Q ss_pred eEEEEEeCCCC----cEEEEEEcCCccHHHHHHHHHhhhCCCCccE-EEEE-CCEEe--eccccccccccCCC----CeE
Q 023198 62 MKLYFKTPSNE----KTFELKANRSDTIENIKFIIEVREGIPVHEY-DIYY-GGKLI--ESYITLDVLNINNE----DTL 129 (286)
Q Consensus 62 ~~i~Vk~~~~g----~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q-~L~~-~g~~L--~D~~tL~~~~I~~~----s~i 129 (286)
|+|+|+++. | .++.+.+.++.||.+|+..|....++|...| .|.+ .|+.| .++..++.+.-.+. .++
T Consensus 1 i~Vlvss~~-g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l 79 (162)
T PF13019_consen 1 INVLVSSFD-GLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITL 79 (162)
T ss_pred CeEEEecCC-CCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEE
Confidence 579999999 8 6889999999999999999999999998874 4554 45566 45555666554333 367
Q ss_pred EEEeecccc
Q 023198 130 QMISVPKEL 138 (286)
Q Consensus 130 ~l~~~~~~~ 138 (286)
.+.++++||
T Consensus 80 ~l~~rl~GG 88 (162)
T PF13019_consen 80 RLSLRLRGG 88 (162)
T ss_pred EEEEeccCC
Confidence 777777764
No 113
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.85 E-value=0.0078 Score=42.69 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=54.5
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcCC---CCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLED---DRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~d---~~tL~~y~I~~~~~l~l~~ 283 (286)
..|.||.++|+.+.-..++++|+++|.+-|.....- .....|+ |..+.+.+ +.||.+.|+.+ +++.+.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~~~ 76 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQRL 76 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEEEe
Confidence 357889999999999999999999999999876543 5556674 67888854 78999999994 5555443
No 114
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.83 E-value=0.0074 Score=43.13 Aligned_cols=69 Identities=17% Similarity=0.302 Sum_probs=57.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcCC---CCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLED---DRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~d---~~tL~~y~I~~~~~l~l~ 282 (286)
..|.||.++|+.+.-..++++|+++|.+-|+...+-+ ....|+ |..+.+.+ +.||.+.|+.+..+|.+.
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 4577899999999999999999999999998765433 556664 78898864 589999999999999874
No 115
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.74 E-value=0.0082 Score=42.92 Aligned_cols=68 Identities=22% Similarity=0.358 Sum_probs=54.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCC-CCceEEE--ecCeEcC-CCCccccCCCCCCCEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQA-PDSQRLV--FKRQQLE-DDRNLASYKIVNESIVN 280 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~-~~~q~L~--~~g~~L~-d~~tL~~y~I~~~~~l~ 280 (286)
..|.|+.++|+.+....+.++||++|.+-|....+-+ .....|+ |..+.|. ++.||.|.|+.+...+.
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~q 76 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIVQ 76 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEEE
Confidence 4678899999999999999999999999999876432 3456674 7888885 47899999999765543
No 116
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.69 E-value=0.014 Score=42.34 Aligned_cols=70 Identities=23% Similarity=0.319 Sum_probs=58.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe--cCeEcC--------CCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF--KRQQLE--------DDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~g~~L~--------d~~tL~~y~I~~~~~l~l~ 282 (286)
..|.++.++|+.+.-....++|+++|..-|.. .+..+..+.|+. ..+.+. .+.||.+.|+.+..+|.+.
T Consensus 5 ~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 5 VKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 56788999999999999999999999999964 456668889874 448885 3679999999999999876
Q ss_pred c
Q 023198 283 D 283 (286)
Q Consensus 283 ~ 283 (286)
+
T Consensus 84 d 84 (85)
T cd01774 84 D 84 (85)
T ss_pred c
Confidence 4
No 117
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.67 E-value=0.0042 Score=53.20 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=54.2
Q ss_pred EEEEEeecc-eEEE-eecCCcCcHHHHHHHHHHH-hCCCCCceEE----EecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 214 SIFVKLLNG-RYII-LEVAKFDTVRDVKDKLFRE-IGQAPDSQRL----VFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 214 ~i~vk~~~g-~~~~-l~v~~~~tV~~lK~~I~~~-~gi~~~~q~L----~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
.|.+...++ ..++ ..++.+.|+.|+++.+.++ ..+-+..+|+ .-+|++|-|+.+|++|+..+|.++++.+.|
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vKDLG 80 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVKDLG 80 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEeccC
Confidence 344544443 2333 5678899999999766555 4577755554 348999999999999999999999999887
No 118
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.67 E-value=0.017 Score=41.30 Aligned_cols=71 Identities=15% Similarity=0.286 Sum_probs=59.0
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCcc-EEEE--ECCEEeecc--ccccccccCCCCeEEE
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHE-YDIY--YGGKLIESY--ITLDVLNINNEDTLQM 131 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~-q~L~--~~g~~L~D~--~tL~~~~I~~~s~i~l 131 (286)
+...|.||.++ |+.+.-...+++||.+|...|......+... ..|+ |-.+.+.+. .||++.|+...+++.+
T Consensus 5 ~~~~I~vRlpd-G~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 5 DVVRIQVRLPD-GSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SEEEEEEEETT-STEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CEEEEEEECCC-CCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 35778999999 9999999999999999999999887766654 6675 556777554 6999999999988875
No 119
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.62 E-value=0.0075 Score=43.04 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=48.7
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCcc------EEEE-ECCEEeeccccccccccCCCCeEEE
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHE------YDIY-YGGKLIESYITLDVLNINNEDTLQM 131 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~------q~L~-~~g~~L~D~~tL~~~~I~~~s~i~l 131 (286)
++|+|.... |+.+.+.+..+.+|+++...+-+..+.+... -.|. -.|..|.++.||++++|.+|+.+.+
T Consensus 3 ~rVtv~~~~-~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGN-GRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT---EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCC-CcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 467777765 7999999999999999999999887754322 3343 4688999999999999999998876
No 120
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.53 E-value=0.0023 Score=47.65 Aligned_cols=43 Identities=23% Similarity=0.259 Sum_probs=34.9
Q ss_pred CcchHHHHHHHHhhchhcCCCCCCCeEEecCcccccCCccccc
Q 023198 5 KTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDY 47 (286)
Q Consensus 5 ~~dtv~~vK~~i~~~~~~~i~~~~q~l~~~g~~L~d~~~l~~y 47 (286)
...||..+|.+|++..........++|+|+|+.|.|+..|+..
T Consensus 22 ~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 22 NTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred CcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 7799999999999993234445558999999999998877664
No 121
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.47 E-value=0.022 Score=40.76 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=60.8
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcC---CCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLE---DDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~---d~~tL~~y~I~~~~~l~l~~~ 284 (286)
..|.++.++|+.+.-....++++++|..-|... |.++..++|+ |..+.+. .+.||.+.|+.++.+|.+-.|
T Consensus 5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Veer 80 (80)
T cd01771 5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEER 80 (80)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEcC
Confidence 567889999999999999999999999999875 8888888985 7888774 356999999999999987543
No 122
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.0046 Score=51.62 Aligned_cols=58 Identities=29% Similarity=0.359 Sum_probs=55.0
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCE
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESI 278 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~ 278 (286)
+++.+.+.+.+.+|+.++|.++.+..|+.+.-|+++|+|..+-|...|.+++|.+|+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~r 212 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQR 212 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCE
Confidence 6788899999999999999999999999999999999999999999999999999953
No 123
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.39 E-value=0.0079 Score=44.74 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=42.2
Q ss_pred EEEeec-ceEEEeecC--CcCcHHHHHHHHHHHhC--CCCCceEEEecCeEcCCCCccccC
Q 023198 216 FVKLLN-GRYIILEVA--KFDTVRDVKDKLFREIG--QAPDSQRLVFKRQQLEDDRNLASY 271 (286)
Q Consensus 216 ~vk~~~-g~~~~l~v~--~~~tV~~lK~~I~~~~g--i~~~~q~L~~~g~~L~d~~tL~~y 271 (286)
.|++.+ -....+++. .+.||..||.+|.+..+ ..-..+||+|+|+.|.|+..|...
T Consensus 4 ~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 4 TIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 344433 234566666 88999999999999984 444668899999999999887554
No 124
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.29 E-value=0.027 Score=40.21 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=56.1
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEeec---cccccccccCCCCeEEE
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLIES---YITLDVLNINNEDTLQM 131 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~D---~~tL~~~~I~~~s~i~l 131 (286)
...|.||.++ |+.+.....+++|+++|.+.+....+.+.....|+ |-.+.+.+ +.||.+.++...+++.+
T Consensus 4 ~~~I~iRlPd-G~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPD-GSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCC-CCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4678899999 99999999999999999999976666665666774 55666753 47999999988777664
No 125
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.0091 Score=49.87 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=55.7
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEE
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQM 131 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l 131 (286)
++.+.+.+...||+.++|..+++..|+.+..|+++|+|+.+-|...|.+|+|.+|....+
T Consensus 156 ~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 156 REDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 678888889999999999999999999999999999999999999999999999976554
No 126
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.08 E-value=0.032 Score=45.14 Aligned_cols=64 Identities=27% Similarity=0.323 Sum_probs=49.8
Q ss_pred eEEEEEeecc----eEEEeecCCcCcHHHHHHHHHHHhCCCCCce-EEEe-cCeEc--CCCCccccCCCCCC
Q 023198 213 HSIFVKLLNG----RYIILEVAKFDTVRDVKDKLFREIGQAPDSQ-RLVF-KRQQL--EDDRNLASYKIVNE 276 (286)
Q Consensus 213 ~~i~vk~~~g----~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q-~L~~-~g~~L--~d~~tL~~y~I~~~ 276 (286)
++|+|+++.| .++.+.++++.||.+|+..|.+..+++...| .|.+ .++.+ .++..+..+.-.+.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~ 72 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ 72 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcC
Confidence 5789999999 6899999999999999999999999999884 4554 35455 45556666654444
No 127
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.88 E-value=0.069 Score=37.75 Aligned_cols=67 Identities=13% Similarity=0.307 Sum_probs=51.7
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEee---ccccccccccCCCCeEE
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLIE---SYITLDVLNINNEDTLQ 130 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~---D~~tL~~~~I~~~s~i~ 130 (286)
...|.||.++ |+.+.-....++|+++|.+.|.....- .....|+ |-.+.+. .+.||.+.|+.+ +.+.
T Consensus 2 ~t~i~iRlpd-G~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~ 73 (77)
T cd01767 2 TTKIQIRLPD-GKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVF 73 (77)
T ss_pred cEEEEEEcCC-CCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEE
Confidence 4578899999 999999999999999999999876543 3445564 5567774 478999999984 4443
No 128
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=95.56 E-value=0.12 Score=45.18 Aligned_cols=105 Identities=14% Similarity=0.228 Sum_probs=73.0
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeC----Ce--eecCCccccccccCCCceEEEEeee-------------
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELFRG----GE--QLQNLKTLAYYDIKENEVLQIIRHV------------- 211 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~----g~--~L~d~~tL~~y~i~~~~~i~l~~~~------------- 211 (286)
.+.|..+++|.++-..|.+ +.|+|++...++|. +. .++...++....+.+|+.|..-...
T Consensus 88 h~~v~~~~~v~~l~~~i~~-~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v 166 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINE-RAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDV 166 (249)
T ss_dssp EEEEETT-BGGGTHHHHHH-HHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SH
T ss_pred EEEECCCCCHHHHHHHHHH-HcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCH
Confidence 3567889999999999999 99999998777773 22 5788899999999999999876532
Q ss_pred ---------eeEEEEEee---cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE
Q 023198 212 ---------KHSIFVKLL---NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256 (286)
Q Consensus 212 ---------~~~i~vk~~---~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~ 256 (286)
++.|.++-. .+..|.+.++...|-.+|-++|+++.|++|...||.
T Consensus 167 ~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 167 KEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 144555442 345899999999999999999999999999999885
No 129
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.53 E-value=0.084 Score=37.68 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=53.0
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCC-CccEEEE--ECCEEeec-cccccccccCCCCe
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIP-VHEYDIY--YGGKLIES-YITLDVLNINNEDT 128 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip-~~~q~L~--~~g~~L~D-~~tL~~~~I~~~s~ 128 (286)
+...|-||.++ |+.+....+.++||++|.+.|....+-+ .....|. |-.+.|.| +.||.|.|+.+.+.
T Consensus 3 p~t~iqiRlpd-G~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 3 PTTSIQIRLAD-GKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred CeeEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 45678899999 9999999999999999999999865432 2445664 66787754 78999999886543
No 130
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.45 E-value=0.12 Score=36.77 Aligned_cols=69 Identities=10% Similarity=0.236 Sum_probs=54.2
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEeec---cccccccccCCCCeEEE
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLIES---YITLDVLNINNEDTLQM 131 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~D---~~tL~~~~I~~~s~i~l 131 (286)
...|.||.++ |+.+.-....++|+++|.+.|+...+-+ ....|+ |-.+.+.+ +.||.+.|+.+.+++.+
T Consensus 4 ~~~i~iRlp~-G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLD-GTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCC-CCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 3568889998 9999999999999999999998765433 335554 66777753 57999999998877764
No 131
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.26 E-value=0.18 Score=36.54 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=55.5
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC--EEee--------ccccccccccCCCCeE
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG--KLIE--------SYITLDVLNINNEDTL 129 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g--~~L~--------D~~tL~~~~I~~~s~i 129 (286)
...+|.||.++ |+.+.-....++|+++|-..|... +-.+....|+.+- +.+. .+.||.+.|+.+..++
T Consensus 3 ~~~~I~iRlp~-G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 3 DTVKIVFKLPN-GTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred ceEEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 45678899999 999999999999999999999754 4455677776543 6775 3679999999987766
Q ss_pred EE
Q 023198 130 QM 131 (286)
Q Consensus 130 ~l 131 (286)
.+
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 54
No 132
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=95.04 E-value=0.22 Score=35.20 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=51.9
Q ss_pred EEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEe----c--CeEcCCCCccccCCCC--CCCEEEEEc
Q 023198 217 VKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVF----K--RQQLEDDRNLASYKIV--NESIVNLTD 283 (286)
Q Consensus 217 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~----~--g~~L~d~~tL~~y~I~--~~~~l~l~~ 283 (286)
|+.++|....++++++.|+.+|=++|+++.|+.... .-|.| + ..-|+.+++|.++... ...++++..
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frv 76 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRV 76 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEE
Confidence 567899999999999999999999999999987644 45777 2 2356788999999877 444555543
No 133
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.14 Score=36.89 Aligned_cols=69 Identities=16% Similarity=0.291 Sum_probs=60.8
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l 281 (286)
+++.|..-+|.++-+.+..++|...|....+++.|=..+..|+.|.|+.++.++|=.+.+...++.|..
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 455555557788889999999999999999999999999999999999999999999999998887653
No 134
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.43 E-value=0.33 Score=34.70 Aligned_cols=71 Identities=21% Similarity=0.348 Sum_probs=57.5
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEee---ccccccccccCCCCeEEEE
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLIE---SYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~---D~~tL~~~~I~~~s~i~l~ 132 (286)
+..+|.|+.++ |+.+.-....++++++|-..+... |.++...+|+ |--+.+. .+.||.+.|+....++.+-
T Consensus 3 ~~~~i~iRlP~-G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 3 PISKLRVRTPS-GDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CeEEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 45678899999 999999999999999999999874 7777777885 5667663 3569999999888777653
No 135
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.43 E-value=0.11 Score=37.74 Aligned_cols=44 Identities=11% Similarity=0.223 Sum_probs=39.1
Q ss_pred EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCC---CceEEEe
Q 023198 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAP---DSQRLVF 257 (286)
Q Consensus 214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~---~~q~L~~ 257 (286)
.+.++.+.|+++.+.+.++..+.+|++.|+++.|+.. ....|.|
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 4677889999999999999999999999999999887 4677776
No 136
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=94.40 E-value=0.074 Score=45.76 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=50.9
Q ss_pred eEEEEEeCCCCcEEE-EEEcCCccHHHHHHHHHhh-hCCCCccEEEE----ECCEEeeccccccccccCCCCeEEE
Q 023198 62 MKLYFKTPSNEKTFE-LKANRSDTIENIKFIIEVR-EGIPVHEYDIY----YGGKLIESYITLDVLNINNEDTLQM 131 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~-l~v~~~~tV~~lK~~I~~~-~gip~~~q~L~----~~g~~L~D~~tL~~~~I~~~s~i~l 131 (286)
|.|++..-++|..++ ...+.+.|+.++++.+..+ ..+.+..+|+. -.|+.|-|+.+|++|+..++.++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 456776665334555 4456688999999776654 46777655553 4699999999999999999977765
No 137
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=94.34 E-value=0.68 Score=39.53 Aligned_cols=101 Identities=18% Similarity=0.304 Sum_probs=57.4
Q ss_pred EEEEEEcCCccHHHHHHHHHhhhCCCCc---cEEE--EECCEE---eeccccccccccCCCCeEEEEeecc---------
Q 023198 74 TFELKANRSDTIENIKFIIEVREGIPVH---EYDI--YYGGKL---IESYITLDVLNINNEDTLQMISVPK--------- 136 (286)
Q Consensus 74 ~~~l~v~~~~tV~~lK~~I~~~~gip~~---~q~L--~~~g~~---L~D~~tL~~~~I~~~s~i~l~~~~~--------- 136 (286)
.+.+-+..+.||.+|-++++.+.+++.+ ..|+ +++++. +..+.++.+. .+...+.+-.-+.
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~~ 112 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDES 112 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT-
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhccccc
Confidence 5778889999999999999999998865 4454 467764 5667777655 3223343322221
Q ss_pred -cceeEEe----ecCC---C-eEEEecCCCccHHhHHHHHHHHhcCCCCC
Q 023198 137 -ELQEIFV----QTPT---S-TVKLEVRRAHTVLDVKKMVESMRICIPSE 177 (286)
Q Consensus 137 -~~~~I~V----~~~~---g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~ 177 (286)
+.+-|.| +.++ | .|.+.|.++.|..++|+.|+. +.|+|..
T Consensus 113 ~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~-rlgv~~k 161 (213)
T PF14533_consen 113 EGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQK-RLGVSDK 161 (213)
T ss_dssp -TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHH-HH---HH
T ss_pred ccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHH-HhCCChh
Confidence 1233444 2222 6 888899999999999999999 9999943
No 138
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.30 E-value=0.47 Score=34.04 Aligned_cols=71 Identities=13% Similarity=0.263 Sum_probs=58.5
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEe---eccccccccccCCCCeEEEE
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLI---ESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L---~D~~tL~~~~I~~~s~i~l~ 132 (286)
+.-+|.||.++ |+...-....++++++|-..++. .|.++....|+ |--+.+ +.+.||.+.|+....++.+-
T Consensus 4 ~~t~i~vRlP~-G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 4 PKARLMLRYPD-GKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred CeeEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 45678999999 99999999999999999999998 57788888886 555655 34579999999988877764
No 139
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=94.29 E-value=0.12 Score=45.25 Aligned_cols=102 Identities=17% Similarity=0.271 Sum_probs=72.2
Q ss_pred CCCcchHHHHHHHHhhchhcCCCCCCCeEEecC------cccccCCcccccCCCCCceeee---e---------------
Q 023198 3 VKKTEKIEKLKLRIHAKVEEEILEDLPELFYAG------QQLENGLTVIDYGIPNNSVIHN---D--------------- 58 (286)
Q Consensus 3 v~~~dtv~~vK~~i~~~~~~~i~~~~q~l~~~g------~~L~d~~~l~~y~i~~~s~l~l---~--------------- 58 (286)
|...++|.++=..|.++ -|.|++...++|.- ..++.+.|++...+.+|+.|-. .
T Consensus 91 v~~~~~v~~l~~~i~~~--~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 91 VPKNDKVSELVPLINER--AGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EETT-BGGGTHHHHHHH--HT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred ECCCCCHHHHHHHHHHH--cCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 45678888999999999 99999999888874 2478889999999999999887 1
Q ss_pred -----CCceEEEEEeCC--CCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE
Q 023198 59 -----SGVMKLYFKTPS--NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY 106 (286)
Q Consensus 59 -----~~~~~i~Vk~~~--~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~ 106 (286)
...+.|.++... ++..|.++++...|-.+|-++|.++.|++|...|++
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 135667777533 246899999999999999999999999999988885
No 140
>COG5417 Uncharacterized small protein [Function unknown]
Probab=93.99 E-value=0.53 Score=32.81 Aligned_cols=61 Identities=18% Similarity=0.147 Sum_probs=49.5
Q ss_pred CCcEEEEEEcCCccHHHHHHHHHhhhCC--C---CccEEEEECCEEeeccccccccccCCCCeEEE
Q 023198 71 NEKTFELKANRSDTIENIKFIIEVREGI--P---VHEYDIYYGGKLIESYITLDVLNINNEDTLQM 131 (286)
Q Consensus 71 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi--p---~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l 131 (286)
+|.++.+.++...++..+=..+-+...+ + -.+.+..-.++.|.++..|.+|+|.+|+.+.+
T Consensus 15 ~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 15 NGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred CCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 4999999999999998888776665432 2 24567888899999999999999999997753
No 141
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=93.86 E-value=0.48 Score=40.49 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=55.0
Q ss_pred CCCCcchHHHHHHHHhhchhcCCCCC-CCeE----EecCcc---cccCCcccccCCCCCceeee---------eC----C
Q 023198 2 KVKKTEKIEKLKLRIHAKVEEEILED-LPEL----FYAGQQ---LENGLTVIDYGIPNNSVIHN---------DS----G 60 (286)
Q Consensus 2 ~v~~~dtv~~vK~~i~~~~~~~i~~~-~q~l----~~~g~~---L~d~~~l~~y~i~~~s~l~l---------~~----~ 60 (286)
-|..+.||.++..+++.+ .+++.+ .+.| +++++. +..+..++.. ....++.+ .. +
T Consensus 39 ~vpk~~tV~Dll~~l~~k--~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~~~~ 114 (213)
T PF14533_consen 39 LVPKTGTVSDLLEELQKK--VGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDESEG 114 (213)
T ss_dssp --BTT-BHHHHHHHHHTT------TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT--T
T ss_pred EECCCCCHHHHHHHHHHH--cCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhccccccc
Confidence 367889999999999999 888765 3444 355553 6666666655 22223443 11 2
Q ss_pred ceEEEEEeCC------CCcEEEEEEcCCccHHHHHHHHHhhhCCCCc
Q 023198 61 VMKLYFKTPS------NEKTFELKANRSDTIENIKFIIEVREGIPVH 101 (286)
Q Consensus 61 ~~~i~Vk~~~------~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~ 101 (286)
.+.|.|-... +|-.|.+.|.+++|..++|++|+++.|+|-.
T Consensus 115 ~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 115 EKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred ceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 3556665443 2777888999999999999999999999953
No 142
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=93.72 E-value=0.54 Score=33.69 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=43.9
Q ss_pred EEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeeeeeEEEEEeecc
Q 023198 150 VKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNG 222 (286)
Q Consensus 150 ~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~i~vk~~~g 222 (286)
+...++-..++..||..++. +.++..+.+.+...+..|+++++|.+.+++-.-.+.+. +-|++..|
T Consensus 5 I~q~mDI~epl~~Lk~lLe~-Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln------vQi~s~~~ 70 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLER-RLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN------VQIKSNQG 70 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHH-HH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE------EEEE--TT
T ss_pred EEEEEecCCcHHHHHHHHHH-hhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE------EEEEecCC
Confidence 34455666789999999999 99999999999998988999999999999998888864 44555544
No 143
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.13 Score=37.20 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=60.8
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~ 133 (286)
+.+.|--.. |.++.+.+..+.+...|-.......|-.-+..|..|+|+..+-++|-.|++..++..|..+.
T Consensus 25 inLkvv~qd-~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 25 INLKVVDQD-GTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred cceEEecCC-CCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHH
Confidence 445555556 88999999999999999999999999999999999999999999999999988887665443
No 144
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.48 E-value=0.16 Score=35.96 Aligned_cols=57 Identities=25% Similarity=0.256 Sum_probs=48.4
Q ss_pred cCCcCcHHHHHHHHHHHhC-CCCCceEEEecCeEcCCCCccccCC-CCCCCEEEEEcCC
Q 023198 229 VAKFDTVRDVKDKLFREIG-QAPDSQRLVFKRQQLEDDRNLASYK-IVNESIVNLTDLG 285 (286)
Q Consensus 229 v~~~~tV~~lK~~I~~~~g-i~~~~q~L~~~g~~L~d~~tL~~y~-I~~~~~l~l~~~~ 285 (286)
|.++++|.+++.-+..... .......|.++|+.|+|...|.+.. +++|+++.++..+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 5788999999999988765 5667788999999999999998875 8889999998654
No 145
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.23 Score=41.55 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=49.7
Q ss_pred EeecCCcCcHHHHHHHHHHHhCCCCCceEE-EecC-----eEc-CCCCccccCCCCCCCEEEEEcC
Q 023198 226 ILEVAKFDTVRDVKDKLFREIGQAPDSQRL-VFKR-----QQL-EDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 226 ~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L-~~~g-----~~L-~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
.-+.+++.|++++|.++.-.+|.+++..+| .|.| ..| +++..|..|...+|-.||+++.
T Consensus 16 Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 16 EKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred hhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 346789999999999999999999999998 4554 234 4677899999999999999874
No 146
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=93.39 E-value=0.47 Score=33.82 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=35.5
Q ss_pred EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEc
Q 023198 224 YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQL 262 (286)
Q Consensus 224 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L 262 (286)
++.+.+++..+..+|+++|.++.++|+++..|.|+...=
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s 50 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEAS 50 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCC
Confidence 899999999999999999999999999999999965543
No 147
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=92.78 E-value=0.41 Score=34.31 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=41.6
Q ss_pred EEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 225 IILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 225 ~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
+...++-..++..||..++.+.|+.-+.+.+...+..|+++++|-+.+++-..++.+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 4455677788999999999999999999999988888999999999999988887765
No 148
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=92.17 E-value=0.36 Score=33.76 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=40.1
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecC
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR 259 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g 259 (286)
+.|-.++|+.-.+.+.|..|+.++-++++++.|+.++...+.+.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 356678999999999999999999999999999999998887654
No 149
>smart00455 RBD Raf-like Ras-binding domain.
Probab=91.99 E-value=0.41 Score=33.29 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=39.8
Q ss_pred EEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecC
Q 023198 216 FVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR 259 (286)
Q Consensus 216 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g 259 (286)
.|-.++|+...+.+.|..|+.++-+.++++.|+.++...+...|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45678999999999999999999999999999999999988754
No 150
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=0.68 Score=38.85 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=48.3
Q ss_pred EEEcCCccHHHHHHHHHhhhCCCCccEEE-EECC-----EEe-eccccccccccCCCCeEEEEeec
Q 023198 77 LKANRSDTIENIKFIIEVREGIPVHEYDI-YYGG-----KLI-ESYITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 77 l~v~~~~tV~~lK~~I~~~~gip~~~q~L-~~~g-----~~L-~D~~tL~~~~I~~~s~i~l~~~~ 135 (286)
....++.|++++|.+++-..|.+++...| .|.| -.| +++..|..|...+|-.||++-.-
T Consensus 17 kr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 17 KRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN 82 (234)
T ss_pred hhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence 44668999999999999999999999988 5765 235 45678999999999988877543
No 151
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=91.02 E-value=0.39 Score=33.94 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=43.0
Q ss_pred cCCCccHHhHHHHHHHHhcC-CCCCCeEEEeCCeeecCCccccccc-cCCCceEEEEee
Q 023198 154 VRRAHTVLDVKKMVESMRIC-IPSEDCELFRGGEQLQNLKTLAYYD-IKENEVLQIIRH 210 (286)
Q Consensus 154 v~~~~tV~~lK~~I~~~~~g-ip~~~q~L~~~g~~L~d~~tL~~y~-i~~~~~i~l~~~ 210 (286)
|.+.++|.|+++-+.. ... .....+.|.++|..|++...+++.. ++.|+++.++..
T Consensus 1 v~~~d~v~dvrq~L~~-~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAE-SPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHh-CccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5678999999999998 432 4444577888999998888888854 777888877654
No 152
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=90.88 E-value=3.5 Score=28.85 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=50.1
Q ss_pred EEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCc-cEEEEE----CCE--EeeccccccccccCCCCeEEEE
Q 023198 66 FKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVH-EYDIYY----GGK--LIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 66 Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~----~g~--~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
|+.++ |....++++++.|+.++=+.|.++.|+.-. ..-|.+ +|. =|+.+++|.++.........+.
T Consensus 1 V~llD-~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~ 73 (80)
T PF09379_consen 1 VRLLD-GTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLY 73 (80)
T ss_dssp EEESS-EEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEE
T ss_pred CCCcC-CCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEE
Confidence 56677 999999999999999999999999998753 477877 222 2788889998877744444433
No 153
>PRK06437 hypothetical protein; Provisional
Probab=90.76 E-value=1.8 Score=29.73 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=43.4
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+++.-.++++...|+.+|-+ ..|+++....+..+|..+. .++-+++|+.|.++.
T Consensus 9 g~~~~~~~i~~~~tv~dLL~----~Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIK----DLGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHH----HcCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 55667778888899998764 4589988888889999997 677788999998864
No 154
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=89.83 E-value=1.4 Score=31.55 Aligned_cols=41 Identities=7% Similarity=0.087 Sum_probs=34.7
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCC-CceEEEecCeE
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAP-DSQRLVFKRQQ 261 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~q~L~~~g~~ 261 (286)
+|..+.+.++++.+..+|+++|++++++.. ....|.|..-+
T Consensus 8 ~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 8 GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 678899999999999999999999999875 66777774443
No 155
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=89.50 E-value=2 Score=28.52 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=39.5
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
+|+. +++....|..+||.++.. +.=.++++|-...++ +-+++||.|.+..||
T Consensus 6 N~k~--~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d-----~~L~e~D~v~~IkkG 57 (57)
T PF14453_consen 6 NEKE--IETEENTTLFELRKESKP------DADIVILNGFPTKED-----IELKEGDEVFLIKKG 57 (57)
T ss_pred CCEE--EEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCc-----cccCCCCEEEEEeCC
Confidence 4454 568888999999987664 233779999988775 455678999999887
No 156
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=88.97 E-value=1.7 Score=30.58 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=37.5
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCe
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQ 260 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~ 260 (286)
+.++. +|....+.+++..|..+|+.+|+.+++++.....|.|...
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 44443 6788899999999999999999999999888888888643
No 157
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=88.51 E-value=1.6 Score=31.57 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=33.3
Q ss_pred EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCc
Q 023198 64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVH 101 (286)
Q Consensus 64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~ 101 (286)
..++.+. |+++.+.+.|+..+.+|++.|.++.|+...
T Consensus 3 FK~~~~~-GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 3 FKFKDPK-GRVHRFRLRPSESLEELRTLISQRLGDDDF 39 (86)
T ss_pred EEeeCCC-CCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence 4567888 999999999999999999999999998863
No 158
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=87.88 E-value=5.9 Score=28.79 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=43.1
Q ss_pred cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE-EC---CE-Eee-ccccccccccCCCCeEEEEeeccc
Q 023198 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIY-YG---GK-LIE-SYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 73 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~---g~-~L~-D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
..++...+..|||+.+++.+.+.+.| ...-||- +. +. .|. .+.|+.+.++..|-+|.+-.+-.+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~D 83 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNED 83 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TT
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccC
Confidence 46677788999999999999999999 5667773 22 33 354 457999999999988777655443
No 159
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=87.68 E-value=3.8 Score=34.04 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=50.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEec---C---eEcCCCCccccCCCC-CCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVFK---R---QQLEDDRNLASYKIV-NESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~---g---~~L~d~~tL~~y~I~-~~~~l~l~ 282 (286)
..+.|..++|.+..+.+++++|++++-..++.+.|++... .-|.+. + ..++...++.+...+ ....+++.
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 4677888999999999999999999999999999996532 234331 1 346667777776655 23455544
No 160
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=87.41 E-value=1.4 Score=30.75 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=38.1
Q ss_pred EEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCC
Q 023198 141 IFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGG 185 (286)
Q Consensus 141 I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g 185 (286)
+.|-.++| .-.+.++++.|+.++-+.+.+ +.|+.++...+.+.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~-kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACK-KRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHH-HcCCCHHHEEEEEec
Confidence 34667888 888999999999999999999 999999998887643
No 161
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=87.31 E-value=0.28 Score=44.05 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=47.7
Q ss_pred ceEEEEEeCCCCcE--EEEEEcCCccHHHHHHHHHhhh-CCCC-ccEEEEECCEEeeccccccccccC
Q 023198 61 VMKLYFKTPSNEKT--FELKANRSDTIENIKFIIEVRE-GIPV-HEYDIYYGGKLIESYITLDVLNIN 124 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~--~~l~v~~~~tV~~lK~~I~~~~-gip~-~~q~L~~~g~~L~D~~tL~~~~I~ 124 (286)
.+.+++|... .+. ..+..+..-||++||..+.... +-|. ..|||+|.|+.|.|+..|.|.=++
T Consensus 9 ~v~lliks~N-q~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrk 75 (391)
T KOG4583|consen 9 PVTLLIKSPN-QSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRK 75 (391)
T ss_pred ceEEEecCCC-ccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHH
Confidence 4566777765 444 4455566889999999998876 4453 569999999999999998887544
No 162
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=87.04 E-value=2.6 Score=29.31 Aligned_cols=51 Identities=25% Similarity=0.350 Sum_probs=38.2
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe--cCeEcCCC
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF--KRQQLEDD 265 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~g~~L~d~ 265 (286)
+.|..++|+...+.+.+..|+.++-.++.++.|+.++...+.. ..+.|.-+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~ 55 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWD 55 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TT
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCC
Confidence 4567789999999999999999999999999999999776653 34444433
No 163
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=85.80 E-value=4.7 Score=29.32 Aligned_cols=60 Identities=13% Similarity=0.214 Sum_probs=41.4
Q ss_pred EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--e--cCe-Ec-CCCCccccCCCCCCCEEEEEcC
Q 023198 224 YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--F--KRQ-QL-EDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 224 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~--~g~-~L-~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
.++...+..|||+.+...+.+.+.| ...-||- | ++- .| +.+.|+.+.+|..|.+|-+--|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~r 80 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEER 80 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE-
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEee
Confidence 5566789999999999999999999 5557773 2 222 45 3557999999999998876543
No 164
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=85.73 E-value=4.7 Score=29.20 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=36.4
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccc
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLA 269 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~ 269 (286)
.|..+.+.++++.+..+|..+|.+++|+. ....+.|... .|-.|+.
T Consensus 10 ~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~ 55 (86)
T cd06408 10 QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMG 55 (86)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCcccc
Confidence 67899999999999999999999999995 4555666554 4555554
No 165
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=85.02 E-value=1.6 Score=43.22 Aligned_cols=174 Identities=14% Similarity=0.098 Sum_probs=97.1
Q ss_pred cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE---ECC-EE--eeccccccccccCCCCeEEEEee--cc-cc--eeE
Q 023198 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIY---YGG-KL--IESYITLDVLNINNEDTLQMISV--PK-EL--QEI 141 (286)
Q Consensus 73 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g-~~--L~D~~tL~~~~I~~~s~i~l~~~--~~-~~--~~I 141 (286)
+.+.+.|+...+++.+|+.|+...++|..-.+++ -++ .. ..++.||+.. .++.+|.+.+. +. +. +.|
T Consensus 877 r~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI 954 (1203)
T KOG4598|consen 877 RFHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKI 954 (1203)
T ss_pred hheeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEE
Confidence 3677889999999999999999999998776664 233 22 3566777754 44554444332 22 11 333
Q ss_pred Ee-----ecCCC---eEEEecCCCccHHhHHHHHHHHhcCCCCCC-----eE--EEe-----CCeee-cCCccccccc--
Q 023198 142 FV-----QTPTS---TVKLEVRRAHTVLDVKKMVESMRICIPSED-----CE--LFR-----GGEQL-QNLKTLAYYD-- 198 (286)
Q Consensus 142 ~V-----~~~~g---~~~l~v~~~~tV~~lK~~I~~~~~gip~~~-----q~--L~~-----~g~~L-~d~~tL~~y~-- 198 (286)
+. +.... .+..-+..++||+..|.++-.+...+..+. ++ +.- -|+.+ +++.++.|-+
T Consensus 955 ~~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen 955 ILLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred EeehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhh
Confidence 21 21122 223346788999999988765233222222 22 211 13333 3333232211
Q ss_pred c----------------CCCceEEEEeeeeeEEEEEeecceEEEe-----ecCCcCcHHHHHHHHHHHhCCCCCceEEE
Q 023198 199 I----------------KENEVLQIIRHVKHSIFVKLLNGRYIIL-----EVAKFDTVRDVKDKLFREIGQAPDSQRLV 256 (286)
Q Consensus 199 i----------------~~~~~i~l~~~~~~~i~vk~~~g~~~~l-----~v~~~~tV~~lK~~I~~~~gi~~~~q~L~ 256 (286)
+ ++++. +.++++-|.-.+..+ -+...+.+.++++.+.+..|||.+...+.
T Consensus 1035 ~~~~~~~qE~~deV~~~k~~~s--------L~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGES--------LPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred hHHHHHHHHHHhhcccCCCCcc--------chhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhhh
Confidence 1 12233 334444333222111 12345678899999999999999987663
No 166
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=84.65 E-value=3.8 Score=27.76 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=51.4
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhC---CCCCceEEE-ecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIG---QAPDSQRLV-FKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~g---i~~~~q~L~-~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+|+...++.+++....-+.++--+..| -|++.-.|. -+|..|+-++.+.|||+.+|.++.|.+.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 577777888888888777777666654 577776664 4889999999999999999999998764
No 167
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=84.60 E-value=3.1 Score=29.23 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=40.4
Q ss_pred EEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCC
Q 023198 216 FVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD 265 (286)
Q Consensus 216 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~ 265 (286)
.|-.++|...++.+.+++|++++-+-.+++.|+.|....|-.+-..++|.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~ 52 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENH 52 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCc
Confidence 46678999999999999999999999999999999887664433334444
No 168
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=84.60 E-value=0.47 Score=42.67 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=45.5
Q ss_pred eEEEEEeecce--EEEeecCCcCcHHHHHHHHHHHhCC--CCCceEEEecCeEcCCCCccccC
Q 023198 213 HSIFVKLLNGR--YIILEVAKFDTVRDVKDKLFREIGQ--APDSQRLVFKRQQLEDDRNLASY 271 (286)
Q Consensus 213 ~~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~gi--~~~~q~L~~~g~~L~d~~tL~~y 271 (286)
+.++||..+.+ ...+..+...||++||.-+..-.-= -+..|||+|.|+.|.|+.-|.|.
T Consensus 10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~ 72 (391)
T KOG4583|consen 10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW 72 (391)
T ss_pred eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence 45667777654 5677778899999999988776542 23569999999999999887765
No 169
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=84.19 E-value=5.5 Score=27.76 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=41.8
Q ss_pred EEEeecCCcCcHHHHHHHHHHHhCC----CCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 224 YIILEVAKFDTVRDVKDKLFREIGQ----APDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 224 ~~~l~v~~~~tV~~lK~~I~~~~gi----~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
...++++...|+.+|.+.+..+.+- ......+..+|+... .++-+++|+.|.++.
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p 75 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP 75 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC
Confidence 4567788899999999999988642 334556677888876 456788999998875
No 170
>smart00455 RBD Raf-like Ras-binding domain.
Probab=83.78 E-value=3 Score=28.87 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=37.7
Q ss_pred EeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCC
Q 023198 142 FVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGG 185 (286)
Q Consensus 142 ~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g 185 (286)
.|-.++| ...+.++|+.|+.++-+.+.+ +.|+.++...+...|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~-kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALK-KRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHH-HcCCCHHHEEEEEcC
Confidence 4556788 889999999999999999999 999999988888754
No 171
>KOG4261 consensus Talin [Cytoskeleton]
Probab=83.74 E-value=2.9 Score=41.88 Aligned_cols=107 Identities=21% Similarity=0.354 Sum_probs=80.3
Q ss_pred eEEEecCCCccHHhHHHHHHHHhcC---CCCCCeEEEe------CCeeecCCccccccccCCCceEEEEeeeeeEEEEEe
Q 023198 149 TVKLEVRRAHTVLDVKKMVESMRIC---IPSEDCELFR------GGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIFVKL 219 (286)
Q Consensus 149 ~~~l~v~~~~tV~~lK~~I~~~~~g---ip~~~q~L~~------~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~i~vk~ 219 (286)
+-++..+|+++|.|-=+.|.+ +.- .-+..+.|.. .|.-|+.+++|.+|-..+++++.-.-+.+ ...|++
T Consensus 14 ~ktmqfepst~vyda~~~ire-~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r-~lkvrm 91 (1003)
T KOG4261|consen 14 VKTMQFEPSTLVYDACKVIRE-KFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQR-PLKVRM 91 (1003)
T ss_pred eeeeeecCchHHHHHHHHHHH-HhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcc-cceeee
Confidence 667888899999886666655 431 1144444442 57789999999999999999987643333 567888
Q ss_pred ecceEEEeecCCcCcHHHHHHHHHHHhCCCC-CceEEEe
Q 023198 220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAP-DSQRLVF 257 (286)
Q Consensus 220 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~q~L~~ 257 (286)
+.|..-++.++.+.+|.+|---|+.+.||.- +.+.|.-
T Consensus 92 ldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslvr 130 (1003)
T KOG4261|consen 92 LDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVR 130 (1003)
T ss_pred cccccceeeecccccHHHHHHHHHhccCccchhhhhhhH
Confidence 9998888999999999999999999999744 4454543
No 172
>PRK06437 hypothetical protein; Provisional
Probab=83.65 E-value=12 Score=25.62 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=42.8
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~ 134 (286)
++...+++....||.+|=+. .|++++.-.+..+|..+. .++-+++|+.+.++-.
T Consensus 10 ~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 10 HINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEV 63 (67)
T ss_pred CcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEec
Confidence 56677888888899888765 588888888889999886 5677888998887643
No 173
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=83.16 E-value=2.5 Score=38.57 Aligned_cols=64 Identities=11% Similarity=0.201 Sum_probs=56.5
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCC--CccccCCCCCCCEEEEEcC
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD--RNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~--~tL~~y~I~~~~~l~l~~~ 284 (286)
..+.+.+.+...-...+++..+...+|++.+..-|+|+++++.++ .+|..||.+.++++.+-.+
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK 76 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence 456788899999999999999999999999999999999999865 5789999999999877543
No 174
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=82.37 E-value=13 Score=25.45 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=39.3
Q ss_pred EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 224 YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 224 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
...+++++..|+.+|-+.+ ++++..-.+..+|..... ++-+++|+.|.++.
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~ 65 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIP 65 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEc
Confidence 5567788889999887555 788777777889998853 66688899888763
No 175
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=82.34 E-value=1.9 Score=39.71 Aligned_cols=68 Identities=24% Similarity=0.354 Sum_probs=54.2
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCC-CCCceEEE--ecCeEcC-CCCccccCCCCCCCEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQ-APDSQRLV--FKRQQLE-DDRNLASYKIVNESIVN 280 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi-~~~~q~L~--~~g~~L~-d~~tL~~y~I~~~~~l~ 280 (286)
-+|-|+..+|+-+...++.++||.+++.-|+.-..- +...+.|+ |.-++|. ++.||++.|+.+...+.
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlvq 377 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLVQ 377 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhhh
Confidence 668888899999999999999999999999877654 33445553 7888886 55799999998766543
No 176
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=81.31 E-value=6.2 Score=27.98 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=32.6
Q ss_pred EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEec
Q 023198 224 YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFK 258 (286)
Q Consensus 224 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 258 (286)
|+.+.+.+..+..+|..+|.++...+++.-.|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 67789999999999999999999999999999884
No 177
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=79.71 E-value=8.6 Score=26.07 Aligned_cols=63 Identities=11% Similarity=0.228 Sum_probs=45.8
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhh---CCCCccEEEE-ECCEEeeccccccccccCCCCeEEEEee
Q 023198 72 EKTFELKANRSDTIENIKFIIEVRE---GIPVHEYDIY-YGGKLIESYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~---gip~~~q~L~-~~g~~L~D~~tL~~~~I~~~s~i~l~~~ 134 (286)
|+...++.+++...--+.++--+.. |-|++.=.|- -+|..|+-++.+.|||+.++-++.|.++
T Consensus 5 GqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 5 GQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 7888888888777666665533333 4565544442 4578888899999999999999988765
No 178
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=79.14 E-value=0.62 Score=41.66 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=0.0
Q ss_pred eEEEEEeecceEEEeec--C---CcCcHHHHHHHHHH----------HhCCCCCceE-----EEecCeEcCCCCccccCC
Q 023198 213 HSIFVKLLNGRYIILEV--A---KFDTVRDVKDKLFR----------EIGQAPDSQR-----LVFKRQQLEDDRNLASYK 272 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v--~---~~~tV~~lK~~I~~----------~~gi~~~~q~-----L~~~g~~L~d~~tL~~y~ 272 (286)
+.|.+|.+-...+.+.+ . .+.+|.++|..+++ ++++|.+..+ |.|+.+++.|++||.+..
T Consensus 79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 44555554443332222 2 36899999999999 8999999999 999999999999998865
Q ss_pred C
Q 023198 273 I 273 (286)
Q Consensus 273 I 273 (286)
=
T Consensus 159 ~ 159 (309)
T PF12754_consen 159 A 159 (309)
T ss_dssp -
T ss_pred h
Confidence 3
No 179
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=78.42 E-value=14 Score=24.78 Aligned_cols=56 Identities=9% Similarity=0.099 Sum_probs=39.2
Q ss_pred ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 220 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
.+|+.+.+ + ..|+.+|.+.+ ++++....+-.++..+. .....+.-+++||.|.++.
T Consensus 5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEE
Confidence 36777776 3 35899888654 67776566678888776 3344567789999998764
No 180
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=78.32 E-value=5.8 Score=27.71 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=34.2
Q ss_pred EEEEeecceEEEeecC-CcCcHHHHHHHHHHHhCCCCCceEEEecC
Q 023198 215 IFVKLLNGRYIILEVA-KFDTVRDVKDKLFREIGQAPDSQRLVFKR 259 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gi~~~~q~L~~~g 259 (286)
+.++. +|....+.+. ++.|..+|+.+|+++.+++.....+.|..
T Consensus 3 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 3 VKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred EEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 33443 3567778888 99999999999999999987666776654
No 181
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=77.96 E-value=6.8 Score=38.11 Aligned_cols=62 Identities=24% Similarity=0.412 Sum_probs=41.1
Q ss_pred eEEEecCCCccHHhHHHHHHHHhc--CCCCC------CeEEEe----CCe-eecCC-------------ccccccccCCC
Q 023198 149 TVKLEVRRAHTVLDVKKMVESMRI--CIPSE------DCELFR----GGE-QLQNL-------------KTLAYYDIKEN 202 (286)
Q Consensus 149 ~~~l~v~~~~tV~~lK~~I~~~~~--gip~~------~q~L~~----~g~-~L~d~-------------~tL~~y~i~~~ 202 (286)
.+++.|-.-|||..+|++|-+ .. +.|.. +..|-+ .|. .|.|. .||++|+|.+|
T Consensus 203 ~i~VkVLdCDTItQVKeKiLD-avyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 281 (539)
T PF08337_consen 203 EIPVKVLDCDTITQVKEKILD-AVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDG 281 (539)
T ss_dssp CEEEEEETTSBHHHHHHHHHH-HHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TT
T ss_pred eEEEEEEecCcccHHHHHHHH-HHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCC
Confidence 778888888999999999976 43 45532 233332 223 44433 48999999999
Q ss_pred ceEEEEeee
Q 023198 203 EVLQIIRHV 211 (286)
Q Consensus 203 ~~i~l~~~~ 211 (286)
+++.++.+.
T Consensus 282 a~vaLv~k~ 290 (539)
T PF08337_consen 282 ATVALVPKQ 290 (539)
T ss_dssp EEEEEEES-
T ss_pred ceEEEeecc
Confidence 999998764
No 182
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=77.68 E-value=6.8 Score=27.55 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=39.1
Q ss_pred EeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCc
Q 023198 142 FVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLK 192 (286)
Q Consensus 142 ~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~ 192 (286)
+|-.++| ...+.+++++|+.++-+.... +.++.|....|..+-..++|..
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk-~~~ldp~eh~Lrlk~~~~e~~~ 53 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACK-RKQLDPMEHYLRLKFLRMENHE 53 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHH-hcCCChhHheeEEEEEecCCcc
Confidence 3556778 888999999999999999999 9999999877765433345443
No 183
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=77.41 E-value=13 Score=26.04 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=38.1
Q ss_pred EEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCe
Q 023198 217 VKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQ 260 (286)
Q Consensus 217 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~ 260 (286)
|-.++|..-.+.+.|..||.++-.++.++.|++++...++.-|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 34578888889999999999999999999999999888766543
No 184
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.29 E-value=3 Score=37.59 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=45.1
Q ss_pred eecCCcCcHHHHHHHHHHHhCCCCCceEEEe---cC-----eEcCCCCccccCCCCCCCEEEEE
Q 023198 227 LEVAKFDTVRDVKDKLFREIGQAPDSQRLVF---KR-----QQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 227 l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~---~g-----~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
..+.-.-||-+++.++..+-|+.+...+|++ .| ..++-+++|..|+|++|+.+-+-
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 3455667999999999999999999999976 22 34456688999999999987653
No 185
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=77.05 E-value=14 Score=25.61 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=41.0
Q ss_pred EEEEEEcCCccHHHHHHHHHhhhCC----CCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 74 TFELKANRSDTIENIKFIIEVREGI----PVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 74 ~~~l~v~~~~tV~~lK~~I~~~~gi----p~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
...+++....||.++.+.+....+- ......+.-+|+... .++-+.+|+.+.++....|
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSG 79 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCC
Confidence 4566777789999999998877532 223455667787765 3566888998887754444
No 186
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=76.79 E-value=15 Score=25.79 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=35.0
Q ss_pred EEEEeecceEEE-eecCCcCcHHHHHHHHHHHhCCCCCceEEEecC
Q 023198 215 IFVKLLNGRYII-LEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR 259 (286)
Q Consensus 215 i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g 259 (286)
+.+.. .|.... +.+.++.|..+|+.+|+++++.+.....|.|..
T Consensus 4 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 4 VKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 34443 445555 889999999999999999999998888888843
No 187
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=76.06 E-value=12 Score=24.86 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=38.4
Q ss_pred eeEEeecCCCeEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEe
Q 023198 139 QEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIR 209 (286)
Q Consensus 139 ~~I~V~~~~g~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~ 209 (286)
|.|+|+.. .++++.+.|..+||.++.. . .-.++++|=...++.. ++.|+.|.+.-
T Consensus 1 M~I~vN~k----~~~~~~~~tl~~lr~~~k~-~------~DI~I~NGF~~~~d~~-----L~e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKVNEK----EIETEENTTLFELRKESKP-D------ADIVILNGFPTKEDIE-----LKEGDEVFLIK 55 (57)
T ss_pred CEEEECCE----EEEcCCCcCHHHHHHhhCC-C------CCEEEEcCcccCCccc-----cCCCCEEEEEe
Confidence 56666633 6788899999999888766 2 2267888877666554 55677777643
No 188
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=75.99 E-value=4 Score=39.68 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=42.6
Q ss_pred ceEEEeecCCcCcHHHHHHHHHHHh--CCCCC------ceEE--Eec--Ce-EcCCC-------------CccccCCCCC
Q 023198 222 GRYIILEVAKFDTVRDVKDKLFREI--GQAPD------SQRL--VFK--RQ-QLEDD-------------RNLASYKIVN 275 (286)
Q Consensus 222 g~~~~l~v~~~~tV~~lK~~I~~~~--gi~~~------~q~L--~~~--g~-~L~d~-------------~tL~~y~I~~ 275 (286)
...+.+.|...|||.++|++|-+.. +.|.. ..-| ..+ |. .|+|. .||.+|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3568899999999999999996652 34433 3333 322 23 55544 6899999999
Q ss_pred CCEEEEEcC
Q 023198 276 ESIVNLTDL 284 (286)
Q Consensus 276 ~~~l~l~~~ 284 (286)
|+++-|+.+
T Consensus 281 ga~vaLv~k 289 (539)
T PF08337_consen 281 GATVALVPK 289 (539)
T ss_dssp TEEEEEEES
T ss_pred CceEEEeec
Confidence 999999875
No 189
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=75.77 E-value=17 Score=25.60 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=37.5
Q ss_pred eEEEeecCCcCcHHHHHHHHHHHhC-CCC--CceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 223 RYIILEVAKFDTVRDVKDKLFREIG-QAP--DSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 223 ~~~~l~v~~~~tV~~lK~~I~~~~g-i~~--~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
....+++....|+++|.+.+..+.. +.. ..-.+..+|+... .++-+++|++|.+..
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~P 77 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIP 77 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeC
Confidence 4566778889999999999977651 111 1123456777654 345678899998764
No 190
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=75.44 E-value=3.9 Score=37.36 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=57.0
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecc--ccccccccCCCCeEEEEeecc
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY--ITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~--~tL~~~~I~~~s~i~l~~~~~ 136 (286)
.+.+++.+.......+++..++...|++...-.|+|+++++.+. .++..||...+.++.+..+..
T Consensus 12 ~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~ 78 (380)
T KOG0012|consen 12 EKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSS 78 (380)
T ss_pred eeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCC
Confidence 68899999999999999999999999999999999999998654 679999999999888754433
No 191
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=74.98 E-value=10 Score=27.11 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=32.4
Q ss_pred EEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCC-ccEEEEE
Q 023198 66 FKTPSNEKTFELKANRSDTIENIKFIIEVREGIPV-HEYDIYY 107 (286)
Q Consensus 66 Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~ 107 (286)
||..-+|..+.+.+.++.+..+|+++|.++.++.. ....|-|
T Consensus 3 vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY 45 (82)
T cd06407 3 VKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKY 45 (82)
T ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEE
Confidence 34333388999999999999999999999999864 4455544
No 192
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=74.79 E-value=5.6 Score=28.81 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=36.5
Q ss_pred EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEE
Q 023198 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRL 255 (286)
Q Consensus 214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L 255 (286)
.+.|-.++|..+.+++..+++..++-+.++.+.|+|.+....
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y 44 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY 44 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence 445566789999999999999999999999999999987643
No 193
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=74.39 E-value=9.3 Score=27.24 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=33.9
Q ss_pred EEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCE
Q 023198 74 TFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK 110 (286)
Q Consensus 74 ~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~ 110 (286)
++.+.+.++-+..+|.++|.++.++|++...|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 8999999999999999999999999998888888644
No 194
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=73.90 E-value=8.1 Score=29.80 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=40.6
Q ss_pred ecCC-cCcHHHHHHHHHHH----hCCCCCc------eEEEe-----------------cCeEc---CCCCccccCCCCCC
Q 023198 228 EVAK-FDTVRDVKDKLFRE----IGQAPDS------QRLVF-----------------KRQQL---EDDRNLASYKIVNE 276 (286)
Q Consensus 228 ~v~~-~~tV~~lK~~I~~~----~gi~~~~------q~L~~-----------------~g~~L---~d~~tL~~y~I~~~ 276 (286)
.|+. +.||.+|++.+.+. .|+||.+ .++++ .+..| +++.||.++||.++
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4665 89999998887665 4565543 23322 12567 78999999999999
Q ss_pred CEEEEEcC
Q 023198 277 SIVNLTDL 284 (286)
Q Consensus 277 ~~l~l~~~ 284 (286)
..|.+..+
T Consensus 101 TEiSfF~~ 108 (122)
T PF10209_consen 101 TEISFFNM 108 (122)
T ss_pred ceeeeeCH
Confidence 99987653
No 195
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.23 E-value=1.2 Score=41.78 Aligned_cols=58 Identities=9% Similarity=0.072 Sum_probs=48.8
Q ss_pred eecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 227 LEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 227 l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
++.+-+-|-.++..+|+++.||+.+..+.+-+|+.|.-.+||.+-|++....+.+..+
T Consensus 54 ~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 3455667788999999999999999999999999999999999999987665554443
No 196
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=73.16 E-value=1.1 Score=40.05 Aligned_cols=63 Identities=11% Similarity=0.267 Sum_probs=0.0
Q ss_pred ceEEEEEeCCCCcEEEEEEc---C--CccHHHHHHHHHh----------hhCCCCccEE-----EEECCEEeeccccccc
Q 023198 61 VMKLYFKTPSNEKTFELKAN---R--SDTIENIKFIIEV----------REGIPVHEYD-----IYYGGKLIESYITLDV 120 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~---~--~~tV~~lK~~I~~----------~~gip~~~q~-----L~~~g~~L~D~~tL~~ 120 (286)
.+.|.+|.+. +..+.+.+. + +.+|.++|..++. .+++|.+..+ |.|+.+.+.|.+||++
T Consensus 78 sItV~Lks~r-np~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e 156 (309)
T PF12754_consen 78 SITVHLKSLR-NPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAE 156 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEeecCC-CCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHH
Confidence 5666666666 444433322 3 6899999999999 8899998888 9999999999999998
Q ss_pred cccC
Q 023198 121 LNIN 124 (286)
Q Consensus 121 ~~I~ 124 (286)
..-.
T Consensus 157 ~l~~ 160 (309)
T PF12754_consen 157 VLAD 160 (309)
T ss_dssp ----
T ss_pred HHhc
Confidence 7644
No 197
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=73.09 E-value=17 Score=26.01 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=27.0
Q ss_pred ecceEEEeecCC--cCcHHHHHHHHHHHhCCC
Q 023198 220 LNGRYIILEVAK--FDTVRDVKDKLFREIGQA 249 (286)
Q Consensus 220 ~~g~~~~l~v~~--~~tV~~lK~~I~~~~gi~ 249 (286)
.+|.+..+.+++ +.+.++|++.|+.+++++
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 377888888888 779999999999999999
No 198
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=73.08 E-value=16 Score=24.71 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=35.1
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEE
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII 208 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~ 208 (286)
+.++.++.|+.++- . ..++|+..-.+.+++..+....- +.+ +++|+.|.++
T Consensus 9 ~~~~~~~~tl~~ll----~-~l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv 59 (65)
T PRK05863 9 QVEVDEQTTVAALL----D-SLGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVV 59 (65)
T ss_pred EEEcCCCCcHHHHH----H-HcCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEE
Confidence 34455677877762 2 45788888888889887644332 235 8999999885
No 199
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=72.93 E-value=25 Score=23.52 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=37.7
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
|+.+.+ + ..|+.+|.+.+ ++++....+..++.... ...-++.-+.+|+.+.++-...|
T Consensus 7 g~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~G 64 (65)
T PRK06488 7 GETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQG 64 (65)
T ss_pred CeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccC
Confidence 777666 3 35888888764 66665555667777654 23344667889998887644333
No 200
>KOG4261 consensus Talin [Cytoskeleton]
Probab=72.86 E-value=4.9 Score=40.36 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=74.3
Q ss_pred CCCCcchHHHHHHHHhhchhcCCC-CCCCeEEe------cCcccccCCcccccCCCCCceeeeeCCceEEEEEeCCCCcE
Q 023198 2 KVKKTEKIEKLKLRIHAKVEEEIL-EDLPELFY------AGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSNEKT 74 (286)
Q Consensus 2 ~v~~~dtv~~vK~~i~~~~~~~i~-~~~q~l~~------~g~~L~d~~~l~~y~i~~~s~l~l~~~~~~i~Vk~~~~g~~ 74 (286)
..+|+.+|++-=+-|+++|.+.-- ++...||. .|-+|+.+++|.+|=..++.++..-+..-...|+++. |-.
T Consensus 18 qfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r~lkvrmld-g~v 96 (1003)
T KOG4261|consen 18 QFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQRPLKVRMLD-GAV 96 (1003)
T ss_pred eecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcccceeeecc-ccc
Confidence 468999999999999999766211 33344442 3567999999999999999998862333346788888 888
Q ss_pred EEEEEcCCccHHHHHHHHHhhhCCC
Q 023198 75 FELKANRSDTIENIKFIIEVREGIP 99 (286)
Q Consensus 75 ~~l~v~~~~tV~~lK~~I~~~~gip 99 (286)
-++.++.+.+|.+|---|-.+.||.
T Consensus 97 kti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 97 KTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred ceeeecccccHHHHHHHHHhccCcc
Confidence 8999999999999987777777765
No 201
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=71.92 E-value=13 Score=25.74 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=34.0
Q ss_pred EEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCC
Q 023198 141 IFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGG 185 (286)
Q Consensus 141 I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g 185 (286)
+.|-.++| ...+.++++.||.++-..+.+ +.|+.++...+...|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~-kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACK-KRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHH-TTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHH-HcCCCHHHEEEEEcC
Confidence 45667888 888999999999999999999 999999887666433
No 202
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=71.66 E-value=22 Score=34.08 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=53.4
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCC----C--CCceEE-EecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQ----A--PDSQRL-VFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi----~--~~~q~L-~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+.|...+ +.+.+-++.+.+++++--.+.+..|- + +....| .-+|.+|+.+.||.+.+|.+|+++++..+
T Consensus 5 VtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 5 VTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 4444433 45778889999999999999888764 2 233444 34888999999999999999999999874
No 203
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=71.61 E-value=41 Score=27.69 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=44.8
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCc-cEEEEECC------EEeeccccccccccC
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVH-EYDIYYGG------KLIESYITLDVLNIN 124 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~~g------~~L~D~~tL~~~~I~ 124 (286)
.+.+.|..++ |.+..+.++++.|++++-..+..+.|++.. ...|.+.. .-++...++.+....
T Consensus 3 ~~~~~V~l~d-g~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLD-GTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecC-CCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 4567777888 999999999999999999999999999642 23443321 234555565555443
No 204
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=70.65 E-value=25 Score=23.56 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=35.8
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEE
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII 208 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~ 208 (286)
++++....|+.++- . ..+++++.-.+..+|....... -.++-+++|+.|.+.
T Consensus 9 ~~~~~~~~tl~~lL----~-~l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~ 60 (66)
T PRK05659 9 PRELPDGESVAALL----A-REGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIV 60 (66)
T ss_pred EEEcCCCCCHHHHH----H-hcCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEE
Confidence 45666778888773 2 4577887777778887765432 334558889998874
No 205
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=70.30 E-value=11 Score=31.14 Aligned_cols=83 Identities=18% Similarity=0.373 Sum_probs=43.8
Q ss_pred CeEEecCcccccCCcccccCCCCCceeeeeCCceEEEEEeCCC------------CcEEEEEEcCCcc------------
Q 023198 29 PELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSN------------EKTFELKANRSDT------------ 84 (286)
Q Consensus 29 q~l~~~g~~L~d~~~l~~y~i~~~s~l~l~~~~~~i~Vk~~~~------------g~~~~l~v~~~~t------------ 84 (286)
.++-|+|.+|..-|....|+|+..|.+-. +|.|.|.+..+-. ..-+.+-|+.-|.
T Consensus 8 ~~i~YDGsqi~slWAy~~fgi~gdSIV~F-rG~c~V~~e~MvDleDv~~~~~I~S~dmlhFIvEhFD~~dl~~~~~rQRL 86 (183)
T PF04017_consen 8 ERIDYDGSQISSLWAYRNFGIQGDSIVVF-RGPCDVKIEHMVDLEDVREEEEIKSDDMLHFIVEHFDSPDLKLAYLRQRL 86 (183)
T ss_dssp SE--BSSGGGSTTHHHHHH---SSEEEEE-EEEEE--GGG--BHHHHHTT---EEEEEEEEEEEE-S---HHHHHHHHHH
T ss_pred CCcCcChhhhhHHHHHHhcCCCCCeEEEE-EcCccccHHHcccHHHhcCCCcccCccceEEEEeeCCCCcHHHHHHHHHH
Confidence 57789999999999999999999998884 7767666432210 1222333443333
Q ss_pred -HHHHHHHHHhhhCCCCccE--EEEECCEEee
Q 023198 85 -IENIKFIIEVREGIPVHEY--DIYYGGKLIE 113 (286)
Q Consensus 85 -V~~lK~~I~~~~gip~~~q--~L~~~g~~L~ 113 (286)
|.-+|+.+++. |+...+- -|+++|+.|.
T Consensus 87 lv~i~kE~L~~~-gv~~~R~GDDLy~~~~KLS 117 (183)
T PF04017_consen 87 LVAIIKEVLEEY-GVKLRREGDDLYVNGRKLS 117 (183)
T ss_dssp HHHHHHHHHHTT-T--EEEETTEEEETTEE-E
T ss_pred HHHHHHHHHHhc-CCceeecccceeECCCEEE
Confidence 33444555554 7775543 6777777663
No 206
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.46 E-value=13 Score=32.77 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=59.2
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcCC---CCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLED---DRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~d---~~tL~~y~I~~~~~l~l~~~ 284 (286)
..+-|+.++|+++.-..++..|...|+..|+-..|...+-+.|+ |..+.+.+ .++|...++-+.+++.+-+.
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil~~~ 287 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLILEPL 287 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheecccc
Confidence 56778889999999999999999999999999999877666663 66666643 36899999988888876543
No 207
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=68.88 E-value=28 Score=24.18 Aligned_cols=43 Identities=16% Similarity=0.306 Sum_probs=34.5
Q ss_pred EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEEC
Q 023198 64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYG 108 (286)
Q Consensus 64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 108 (286)
+.++. . |....+.+.++.|-.+|+.+|..+.+.+.....|-|.
T Consensus 4 vK~~~-~-~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 4 VKLRY-G-GETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred EEEEE-C-CEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 44443 4 7889999999999999999999999987666666554
No 208
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=68.55 E-value=35 Score=23.34 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=38.3
Q ss_pred EEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198 74 TFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 74 ~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~ 135 (286)
...+++.++.||.++-+.+ ++++..-.+..+|.... .++-+.+|+.+.++-..
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~V 67 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPVV 67 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEccc
Confidence 5667778888999988764 67776666678888774 35668888888876433
No 209
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=67.24 E-value=41 Score=23.72 Aligned_cols=35 Identities=37% Similarity=0.601 Sum_probs=30.0
Q ss_pred ceEEEeecCCcCcHHHHHHHHHHHhCCC--CCceEEE
Q 023198 222 GRYIILEVAKFDTVRDVKDKLFREIGQA--PDSQRLV 256 (286)
Q Consensus 222 g~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~q~L~ 256 (286)
+...++.|++++|..++-..+.++.++. +....|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6678899999999999999999999987 5556664
No 210
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.65 E-value=15 Score=33.31 Aligned_cols=53 Identities=13% Similarity=0.335 Sum_probs=41.0
Q ss_pred EcCCccHHHHHHHHHhhhCCCCccEEEEE---CCEE-----eeccccccccccCCCCeEEE
Q 023198 79 ANRSDTIENIKFIIEVREGIPVHEYDIYY---GGKL-----IESYITLDVLNINNEDTLQM 131 (286)
Q Consensus 79 v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~-----L~D~~tL~~~~I~~~s~i~l 131 (286)
+.-.-||.+++..+..+-|+.+.+.+|++ +|+. ..-+..|..|+|++|+.+.+
T Consensus 354 I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 354 ICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred EEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 44566999999999999999999999987 3443 34456777888888876654
No 211
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=65.45 E-value=22 Score=25.35 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=38.4
Q ss_pred eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEe-CCeeecCCccccccccCCCceEEEEe
Q 023198 149 TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFR-GGEQLQNLKTLAYYDIKENEVLQIIR 209 (286)
Q Consensus 149 ~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~-~g~~L~d~~tL~~y~i~~~~~i~l~~ 209 (286)
.+.+...+..||.++ -+ ..|+|..+-.+++ ||+..+- +|-++.|+.+.+..
T Consensus 24 ~~~~~~~~~~tvkd~----IE-sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 24 PFTHPFDGGATVKDV----IE-SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred ceEEecCCCCcHHHH----HH-HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 778889999999887 34 5899988876664 7776543 36778899888754
No 212
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=64.90 E-value=18 Score=27.94 Aligned_cols=54 Identities=20% Similarity=0.393 Sum_probs=37.0
Q ss_pred EcC-CccHHHHHHHHHhh----hCCCCcc------EEEEEC-----------------CEEe---eccccccccccCCCC
Q 023198 79 ANR-SDTIENIKFIIEVR----EGIPVHE------YDIYYG-----------------GKLI---ESYITLDVLNINNED 127 (286)
Q Consensus 79 v~~-~~tV~~lK~~I~~~----~gip~~~------q~L~~~-----------------g~~L---~D~~tL~~~~I~~~s 127 (286)
|+. +.||.++++.+.+. .|+||-+ .+++.. ...| +++.+|.++||.++.
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 88999988776654 4777633 233321 1245 678899999999998
Q ss_pred eEEEE
Q 023198 128 TLQMI 132 (286)
Q Consensus 128 ~i~l~ 132 (286)
.|.+.
T Consensus 102 EiSfF 106 (122)
T PF10209_consen 102 EISFF 106 (122)
T ss_pred eeeee
Confidence 87765
No 213
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=63.93 E-value=47 Score=23.16 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=39.4
Q ss_pred EEEeecCCc-CcHHHHHHHHHHHhC-CCC--CceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 224 YIILEVAKF-DTVRDVKDKLFREIG-QAP--DSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 224 ~~~l~v~~~-~tV~~lK~~I~~~~g-i~~--~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
...+++... .|+.+|++.+.++.+ +.. ....+..+|+...+ +.-+++|+.|.++.
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~P 75 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIP 75 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeC
Confidence 356778776 899999999998864 111 22355667777664 56788999998864
No 214
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=63.28 E-value=13 Score=37.12 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=37.5
Q ss_pred ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeE
Q 023198 220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQ 261 (286)
Q Consensus 220 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~ 261 (286)
.++..+.+-++++.|+..+++.|...+|+|...|.|.|.|..
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 356778889999999999999999999999999999997653
No 215
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=62.23 E-value=45 Score=23.91 Aligned_cols=60 Identities=7% Similarity=0.225 Sum_probs=41.3
Q ss_pred eeEEeecCCCeEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEE
Q 023198 139 QEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII 208 (286)
Q Consensus 139 ~~I~V~~~~g~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~ 208 (286)
|.|.|+.. +.++....||.+|-+ ..++|+....+..+|..+.. ...+.+-+++||.|.++
T Consensus 19 m~I~VNG~----~~~~~~~~tl~~LL~-----~l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv 78 (84)
T PRK06083 19 ITISINDQ----SIQVDISSSLAQIIA-----QLSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLF 78 (84)
T ss_pred EEEEECCe----EEEcCCCCcHHHHHH-----HcCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEE
Confidence 56666533 455667778877633 24678777788889988743 34556678999999874
No 216
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=61.99 E-value=44 Score=23.43 Aligned_cols=70 Identities=7% Similarity=0.041 Sum_probs=41.5
Q ss_pred eEEEEEeCC-----CC-cEEEEEEcCCccHHHHHHHHHhhh-CCCC--ccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198 62 MKLYFKTPS-----NE-KTFELKANRSDTIENIKFIIEVRE-GIPV--HEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 62 ~~i~Vk~~~-----~g-~~~~l~v~~~~tV~~lK~~I~~~~-gip~--~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
|.|.|+... -| ....+++....||++|.+.+.... ++.. ..-.+..+|+... .++-+.+|+.|.+.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 456666442 03 456677778899999999987654 1111 1112445666543 34567788888776
Q ss_pred eecc
Q 023198 133 SVPK 136 (286)
Q Consensus 133 ~~~~ 136 (286)
....
T Consensus 77 Ppvs 80 (82)
T PLN02799 77 PPIS 80 (82)
T ss_pred CCCC
Confidence 4433
No 217
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=61.82 E-value=42 Score=24.47 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=32.9
Q ss_pred EEEEeecceEEEeecCC-----cCcHHHHHHHHHHHhCCCC-CceEEEecC
Q 023198 215 IFVKLLNGRYIILEVAK-----FDTVRDVKDKLFREIGQAP-DSQRLVFKR 259 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~-----~~tV~~lK~~I~~~~gi~~-~~q~L~~~g 259 (286)
|.++. +|....+.++. +.+...|+.+|++.+++++ ....|.|..
T Consensus 3 vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 3 VKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred EEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 44443 66677777764 6899999999999999988 556676743
No 218
>PRK07440 hypothetical protein; Provisional
Probab=61.62 E-value=46 Score=22.85 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=40.5
Q ss_pred eeEEeecCCCeEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEE
Q 023198 139 QEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII 208 (286)
Q Consensus 139 ~~I~V~~~~g~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~ 208 (286)
|.|.|+.. +.++....||.+|- . ..++++....+..+|..+..+ ...++.+++|+.|.++
T Consensus 5 m~i~vNG~----~~~~~~~~tl~~lL----~-~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 5 ITLQVNGE----TRTCSSGTSLPDLL----Q-QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIV 64 (70)
T ss_pred eEEEECCE----EEEcCCCCCHHHHH----H-HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEE
Confidence 56666533 45667778888773 2 456777777888899877532 2445568889998874
No 219
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=61.18 E-value=47 Score=22.54 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=34.1
Q ss_pred EecCCC-ccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEE
Q 023198 152 LEVRRA-HTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII 208 (286)
Q Consensus 152 l~v~~~-~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~ 208 (286)
.++... .||.++-+ ..++++....+..+|..+..+ ..+.+.+++|+.|.++
T Consensus 10 ~~~~~~~~tv~~lL~-----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv 61 (67)
T PRK07696 10 IEVPESVKTVAELLT-----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIV 61 (67)
T ss_pred EEcCCCcccHHHHHH-----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEE
Confidence 345554 57777632 356777777777899877543 2455668899999874
No 220
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=60.96 E-value=86 Score=25.20 Aligned_cols=99 Identities=24% Similarity=0.262 Sum_probs=66.1
Q ss_pred cchHHHHHHHHhhchhcCCCCCCCeEEecCcccccCCcccccCCCCCce--------eeeeCCceEEEEEeCCCCcEEEE
Q 023198 6 TEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSV--------IHNDSGVMKLYFKTPSNEKTFEL 77 (286)
Q Consensus 6 ~dtv~~vK~~i~~~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~--------l~l~~~~~~i~Vk~~~~g~~~~l 77 (286)
-+|.+.+-.+|.+. +|| .|++-+|-.|.. --.||=-.|.. |++-...+.+.|+. | .+.+
T Consensus 13 peTtEklLN~l~~i--~GI----~R~vi~Gp~LPk---~VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v---G-ri~l 79 (153)
T PF02505_consen 13 PETTEKLLNELYSI--EGI----RRVVIHGPRLPK---TVPYGPARGTPVNHPDRKVINVGGEEVELTVKV---G-RIIL 79 (153)
T ss_pred HHHHHHHHHHHhcc--CCE----EEEEEECCCCCC---CCCCCCCCCCcCCCCcceEEEECCEEEEEEEEE---e-EEEE
Confidence 47889999999888 777 788888888875 23454433332 33212356677765 3 3567
Q ss_pred EEcC-CccHHHHHHHHHhhhCCCCccEEEEECCEEeecccccccc
Q 023198 78 KANR-SDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121 (286)
Q Consensus 78 ~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~ 121 (286)
++.. .+.+..+++.-++..-++.+ +..|+-+....|++||
T Consensus 80 ele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 80 ELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 7777 67777777766665533322 2358889999999998
No 221
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=60.57 E-value=39 Score=22.55 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=39.9
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+|+.+. ++...|+.+|.+.+ ++++....+..+|+....+ .-.++-+++|+.|.++.
T Consensus 5 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 5 NGEPRE--VEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVT 60 (65)
T ss_pred CCeEEE--cCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 566644 56678999887654 5788888888899887542 23345688999998764
No 222
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=60.08 E-value=37 Score=23.63 Aligned_cols=37 Identities=8% Similarity=0.222 Sum_probs=31.1
Q ss_pred CcEEE-EEEcCCccHHHHHHHHHhhhCCCCccEEEEEC
Q 023198 72 EKTFE-LKANRSDTIENIKFIIEVREGIPVHEYDIYYG 108 (286)
Q Consensus 72 g~~~~-l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 108 (286)
|.... +.+.++.|..+|..+|++..+.+.....+.|.
T Consensus 10 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 10 GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 45555 88988999999999999999999777777764
No 223
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=60.04 E-value=23 Score=24.24 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=46.0
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCC--CCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQ--APDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi--~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
.| ...+.+....||.+|.+.+..+..- ......+..+|+...+ .-.++-+++|++|.++.
T Consensus 11 ~g-~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 11 AG-EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp HT-EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred hC-CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC
Confidence 35 5667889999999999999877631 2355677889998887 35666778999998864
No 224
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=58.80 E-value=34 Score=25.28 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=34.8
Q ss_pred eecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe--cCeEc
Q 023198 219 LLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF--KRQQL 262 (286)
Q Consensus 219 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~g~~L 262 (286)
-.+|++..+.|+.+.|..+|+.++++.++++.. ..|.| .|..|
T Consensus 19 Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~Lp~edl 63 (97)
T cd06410 19 YVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQLPDEDL 63 (97)
T ss_pred EcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEEcCCCCc
Confidence 357899999999999999999999999999876 55544 35444
No 225
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=58.72 E-value=75 Score=23.82 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=48.4
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhh----C--CCCc-cEEEEECCEE--eeccccccccc-----cCC
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVRE----G--IPVH-EYDIYYGGKL--IESYITLDVLN-----INN 125 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~----g--ip~~-~q~L~~~g~~--L~D~~tL~~~~-----I~~ 125 (286)
+.+.|.|........+++.+++++|+.++.+.+-.+. + -+++ +..|--.|+. |..+..|.+|. +..
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~ 95 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKN 95 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhc
Confidence 4455555554324678999999999999998766541 1 2223 4555455653 66677777775 556
Q ss_pred CCeEEEEeec
Q 023198 126 EDTLQMISVP 135 (286)
Q Consensus 126 ~s~i~l~~~~ 135 (286)
|..++|++..
T Consensus 96 ~~~~~L~L~~ 105 (108)
T smart00144 96 GREPHLVLMT 105 (108)
T ss_pred CCCceEEEEe
Confidence 7777776543
No 226
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=58.60 E-value=19 Score=33.34 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=53.5
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhh-CCCCccEEEE--ECCEEeec-cccccccccCCCCeE
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVRE-GIPVHEYDIY--YGGKLIES-YITLDVLNINNEDTL 129 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~q~L~--~~g~~L~D-~~tL~~~~I~~~s~i 129 (286)
+.-.|-|+..+ |+.....++.+.||.+|+..|...- +-+...+.|+ |--++|.| ..||.+-|+.+...+
T Consensus 304 PtTsIQIRLan-G~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 304 PTTSIQIRLAN-GTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CcceEEEEecC-CceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 45567777777 9999999999999999999999865 5666677775 55778865 678999998766533
No 227
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=58.60 E-value=31 Score=24.11 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=34.8
Q ss_pred ecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCC
Q 023198 144 QTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGG 185 (286)
Q Consensus 144 ~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g 185 (286)
-.++| +-.+.+.++.||.++-.+.-+ +.|++++...+..-|
T Consensus 5 ~LPdg~~T~V~vrpG~ti~d~L~klle-kRgl~~~~~~vf~~g 46 (73)
T cd01817 5 ILPDGSTTVVPTRPGESIRDLLSGLCE-KRGINYAAVDLFLVG 46 (73)
T ss_pred ECCCCCeEEEEecCCCCHHHHHHHHHH-HcCCChhHEEEEEec
Confidence 35777 778899999999999999999 999999887776544
No 228
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=58.18 E-value=28 Score=26.93 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=36.8
Q ss_pred eEEE-ecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccc
Q 023198 149 TVKL-EVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAY 196 (286)
Q Consensus 149 ~~~l-~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~ 196 (286)
.-.+ -|+.+.||.++...|.. +.++++++-.|..++..+..+.++++
T Consensus 41 K~KfllVP~d~tV~qF~~iIRk-rl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQ-ALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHH-HcCCChhHEEEEECCccCCccchHHH
Confidence 3344 59999999999999999 99999998444457766677777766
No 229
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=57.05 E-value=33 Score=23.72 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=29.1
Q ss_pred CcEEEEEEc-CCccHHHHHHHHHhhhCCCCccEEEEE
Q 023198 72 EKTFELKAN-RSDTIENIKFIIEVREGIPVHEYDIYY 107 (286)
Q Consensus 72 g~~~~l~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~ 107 (286)
|....+.+. .+.|..+|+++|.++.+.+.....+.|
T Consensus 9 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y 45 (81)
T cd05992 9 GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKY 45 (81)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEe
Confidence 678888888 899999999999999998754444444
No 230
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=57.04 E-value=44 Score=31.98 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=53.5
Q ss_pred eeEEeecCCCeEEEecCCCccHHhHHHHHHHHhcCC------CCCCeEEE-eCCeeecCCccccccccCCCceEEEEee
Q 023198 139 QEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICI------PSEDCELF-RGGEQLQNLKTLAYYDIKENEVLQIIRH 210 (286)
Q Consensus 139 ~~I~V~~~~g~~~l~v~~~~tV~~lK~~I~~~~~gi------p~~~q~L~-~~g~~L~d~~tL~~y~i~~~~~i~l~~~ 210 (286)
++|.|..++..+.+-++.+..|.++--.+-+ ..+- ++....|. -+|..|+.+++|.+.+|.+|+.++|...
T Consensus 3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~-~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 3 CRVTVLAGRRAVDVALPADVPVAELIPDLVD-LLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEEEeeCCeeeeeecCCCCcHHHHHHHHHH-HhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 3566665544777778888899998888877 5432 23344555 3788999999999999999999999753
No 231
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=56.59 E-value=34 Score=24.19 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=28.5
Q ss_pred EEEeecCCcCcHHHHHHHHHHHhCC--CCCceEEE
Q 023198 224 YIILEVAKFDTVRDVKDKLFREIGQ--APDSQRLV 256 (286)
Q Consensus 224 ~~~l~v~~~~tV~~lK~~I~~~~gi--~~~~q~L~ 256 (286)
..++.|.+++|+.++-..+.++.|+ .+....|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 7789999999999999999999998 44556774
No 232
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=55.87 E-value=85 Score=23.53 Aligned_cols=61 Identities=20% Similarity=0.160 Sum_probs=41.4
Q ss_pred eEEEecCCCccHHhHHHHHHHHh------cCCCCC-CeEEEeCCe--eecCCccccccc-----cCCCceEEEEee
Q 023198 149 TVKLEVRRAHTVLDVKKMVESMR------ICIPSE-DCELFRGGE--QLQNLKTLAYYD-----IKENEVLQIIRH 210 (286)
Q Consensus 149 ~~~l~v~~~~tV~~lK~~I~~~~------~gip~~-~q~L~~~g~--~L~d~~tL~~y~-----i~~~~~i~l~~~ 210 (286)
.+++.+.+++|+.++.+.+-. + ..-+++ ++.|--.|+ -|..+..|.+|. ++.|..++|.+.
T Consensus 30 ~~t~~v~~~~~p~~li~~~l~-k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~ 104 (108)
T smart00144 30 TKTLKVNPNCTPDSVLAQAFT-KMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLM 104 (108)
T ss_pred eEEEEECCCCCHHHHHHHHHH-HHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEE
Confidence 888999999999998777655 4 122233 566666666 356667777765 566777777653
No 233
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=55.78 E-value=31 Score=34.62 Aligned_cols=43 Identities=21% Similarity=0.403 Sum_probs=38.3
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEE--eec
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKL--IES 114 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~--L~D 114 (286)
+..+.+-++++.|...+++.|+..+|+|...|-|+|.|.. ++|
T Consensus 324 ~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~~~ 368 (732)
T KOG4250|consen 324 ATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSHLED 368 (732)
T ss_pred ceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccccCc
Confidence 6788888999999999999999999999999999999764 444
No 234
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=55.72 E-value=71 Score=22.60 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=39.5
Q ss_pred EEEeecCCcCcHHHHHHHHHHHhC-----C-C-----CCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 224 YIILEVAKFDTVRDVKDKLFREIG-----Q-A-----PDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 224 ~~~l~v~~~~tV~~lK~~I~~~~g-----i-~-----~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
...++++ ..||.+|.+.+.++.+ + . .....+..+|+....+.. .-+++|+.|.++.
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~P 83 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFP 83 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeC
Confidence 4567776 8999999999988864 1 1 123456678887765432 5689999998864
No 235
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=54.63 E-value=40 Score=23.92 Aligned_cols=51 Identities=14% Similarity=0.398 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHHhCCCCCceEEEe--cCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 233 DTVRDVKDKLFREIGQAPDSQRLVF--KRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 233 ~tV~~lK~~I~~~~gi~~~~q~L~~--~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
.+.++|+.+.+++++++...-+|+. .|.+.+|..=+.. +.+++.+.++..|
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~lm~L~~g 73 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--LPDNTVLMLLEKG 73 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--SSSSEEEEEEESS
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--CCCCCEEEEECCC
Confidence 6799999999999999987777754 6666665421111 4555666665544
No 236
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=54.54 E-value=54 Score=23.36 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=41.5
Q ss_pred ceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe-cCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 222 GRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF-KRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 222 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+..+........||.++- +..|+|...-.+++ +|+...- +|-+++|+.|.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~I----EsLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVI----ESLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHH----HHcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 456788999999999865 56899999887755 8877654 47788999988754
No 237
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=54.42 E-value=58 Score=23.57 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=30.0
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCC
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIP 99 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip 99 (286)
++|.|.. . |.++.+.+.++-+-.+|.++|.++.++.
T Consensus 3 ikVKv~~-~-~Dv~~i~v~~~i~f~dL~~kIrdkf~~~ 38 (86)
T cd06408 3 IRVKVHA-Q-DDTRYIMIGPDTGFADFEDKIRDKFGFK 38 (86)
T ss_pred EEEEEEe-c-CcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4555543 3 7899999999999999999999999985
No 238
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=53.54 E-value=15 Score=26.55 Aligned_cols=53 Identities=23% Similarity=0.396 Sum_probs=28.8
Q ss_pred CcCcHHHHHHHHHH-HhCCCCCc----eEEEecCeE----cCCCCccccCCCCCCCEEEEEc
Q 023198 231 KFDTVRDVKDKLFR-EIGQAPDS----QRLVFKRQQ----LEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 231 ~~~tV~~lK~~I~~-~~gi~~~~----q~L~~~g~~----L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
...|+++|-++|.. +.|..... -.++|.... -...++|+++||.+|+.|.+.+
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D 68 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDD 68 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEE
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEE
Confidence 35689998887644 56654422 233333222 1234789999999999998764
No 239
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=52.25 E-value=47 Score=23.73 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=28.8
Q ss_pred EEEeCCCCcEEEEEEcC--CccHHHHHHHHHhhhCCC
Q 023198 65 YFKTPSNEKTFELKANR--SDTIENIKFIIEVREGIP 99 (286)
Q Consensus 65 ~Vk~~~~g~~~~l~v~~--~~tV~~lK~~I~~~~gip 99 (286)
.||..-+|.++.+.+++ +.+-++|+++|....+++
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 34433338999999999 669999999999999998
No 240
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=52.20 E-value=18 Score=25.53 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=24.5
Q ss_pred HHHHHhCCCCCceEEE---ecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 241 KLFREIGQAPDSQRLV---FKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 241 ~I~~~~gi~~~~q~L~---~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
.|++++-+.|..-.|. ..+.+|+-.++|.++||. .||..+
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGir---ELYA~D 44 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIR---ELYAWD 44 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-S---EEEEEE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHH---HHHhhc
Confidence 4899999999888875 578899999999999997 455443
No 241
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=52.06 E-value=40 Score=24.34 Aligned_cols=39 Identities=31% Similarity=0.175 Sum_probs=32.9
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCce
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQ 253 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q 253 (286)
|.|-..+|...++.|++..|+.++=..++.+.+...+.-
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~ 43 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSS 43 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCC
Confidence 455567899999999999999999999999998766543
No 242
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=52.04 E-value=55 Score=23.23 Aligned_cols=51 Identities=12% Similarity=0.302 Sum_probs=33.7
Q ss_pred CcHHHHHHHHHHHhCCCCCceEEE--ecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 233 DTVRDVKDKLFREIGQAPDSQRLV--FKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 233 ~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
.+.++|+.+.++++++|...-+|+ -.|.+++|..=+.. +.+++.+.++-.|
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t--Lp~nT~l~~l~~g 73 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT--LPDNTVLMLLEPG 73 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc--CCCCcEEEEECCC
Confidence 468999999999999976555554 47888866522211 3455566555443
No 243
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=51.85 E-value=15 Score=27.19 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=21.1
Q ss_pred EEEECCEEeeccccccccccCCCCeEEEE
Q 023198 104 DIYYGGKLIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 104 ~L~~~g~~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
.|-|+|++|..+.+|++| +..+..--++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKii 30 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKII 30 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEE
Confidence 477999999999999999 5544433333
No 244
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=51.78 E-value=19 Score=27.81 Aligned_cols=43 Identities=12% Similarity=0.208 Sum_probs=34.1
Q ss_pred eecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccc
Q 023198 227 LEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLA 269 (286)
Q Consensus 227 l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~ 269 (286)
+-|+.+.||+++...|..+.++++++.-|..++..+..+.++.
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg 87 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVG 87 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHH
Confidence 3699999999999999999999999854455666666665553
No 245
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=51.66 E-value=30 Score=24.26 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=19.5
Q ss_pred EeecC-CcCcHHHHHHHHHHHhCC-CCCceEE
Q 023198 226 ILEVA-KFDTVRDVKDKLFREIGQ-APDSQRL 255 (286)
Q Consensus 226 ~l~v~-~~~tV~~lK~~I~~~~gi-~~~~q~L 255 (286)
++..+ ++-+|.+||..|.++.++ .....-|
T Consensus 13 ~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL 44 (74)
T PF08783_consen 13 TITFDGTSISVFDLKREIIEKKKLGKGTDFDL 44 (74)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHT---TTTEEE
T ss_pred EEEECCCeeEHHHHHHHHHHHhCCCcCCcCCE
Confidence 34443 477999999999888776 3344333
No 246
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=51.62 E-value=51 Score=23.88 Aligned_cols=40 Identities=13% Similarity=0.271 Sum_probs=34.5
Q ss_pred EEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccE
Q 023198 63 KLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEY 103 (286)
Q Consensus 63 ~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q 103 (286)
.+-|-.++ |.++.+++..+++..++=+.+..+.|+|.+-.
T Consensus 3 ~L~V~Lpd-g~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~ 42 (87)
T cd01777 3 ELRIALPD-KATVTVRVRKNATTDQVYQALVAKAGMDSYTQ 42 (87)
T ss_pred EEEEEccC-CCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH
Confidence 45565677 99999999999999999999999999997644
No 247
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=51.50 E-value=54 Score=24.83 Aligned_cols=40 Identities=8% Similarity=0.056 Sum_probs=33.2
Q ss_pred eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEc
Q 023198 223 RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQL 262 (286)
Q Consensus 223 ~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L 262 (286)
+.-...|++++|++.+-..+....++++..+-++|=..-.
T Consensus 45 K~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 45 KKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 3445789999999999999999999999999887744433
No 248
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=51.38 E-value=56 Score=23.21 Aligned_cols=48 Identities=29% Similarity=0.427 Sum_probs=35.7
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCC--CceEEE--e-cC--eEcCC-CCcc
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAP--DSQRLV--F-KR--QQLED-DRNL 268 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~--~~q~L~--~-~g--~~L~d-~~tL 268 (286)
++...++.|.+++|+.++-..+.++.++.. ....|+ . +| +.|.+ .+++
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl 69 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPL 69 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcce
Confidence 366788999999999999999999999975 456663 3 44 45544 4444
No 249
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=51.25 E-value=37 Score=24.04 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=32.3
Q ss_pred cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC
Q 023198 73 KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG 109 (286)
Q Consensus 73 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g 109 (286)
=|+.+.+.+..+..+|..+|.++...|++.-.|.|..
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 3567788899999999999999999999998888753
No 250
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=50.36 E-value=80 Score=22.62 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=41.2
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+|+... +....||.+|-+. .++++....+-.+|..+. .....++-+++||.|.++.
T Consensus 24 NG~~~~--~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 24 NDQSIQ--VDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred CCeEEE--cCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEE
Confidence 567655 5667788877654 578888778888998884 3456677789999998763
No 251
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=49.15 E-value=77 Score=21.09 Aligned_cols=59 Identities=7% Similarity=0.193 Sum_probs=39.1
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
|+.+ ++....||.+|.+.+ +++++.-.+..+|+....+ .-.++-+.+|+.+.++-...|
T Consensus 6 g~~~--~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~G 64 (65)
T cd00565 6 GEPR--EVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGG 64 (65)
T ss_pred CeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence 5554 445678999888764 5777777778888866432 122456888998887654433
No 252
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=49.01 E-value=55 Score=22.97 Aligned_cols=51 Identities=10% Similarity=0.232 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHHHhCCCCCceEEE--ecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 233 DTVRDVKDKLFREIGQAPDSQRLV--FKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 233 ~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
.|.++|+.+.+++++++...-+|+ -.|.+++|..=+.. +.+++.+.++..|
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp~nt~l~~L~~g 71 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LPDNTELMALEKG 71 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CCCCcEEEEEcCC
Confidence 468999999999999997666654 47888876522221 3555666655444
No 253
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=48.87 E-value=89 Score=21.70 Aligned_cols=59 Identities=10% Similarity=0.073 Sum_probs=38.8
Q ss_pred EEEEEEcCC-ccHHHHHHHHHhhhC-CC--CccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 74 TFELKANRS-DTIENIKFIIEVREG-IP--VHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 74 ~~~l~v~~~-~tV~~lK~~I~~~~g-ip--~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
...+++..+ .||.+|.+.+.++.+ +- .....+.-+++...+ +.-+++|+.+.+.-...|
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsG 79 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSG 79 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCC
Confidence 456777766 899999999988763 11 122345566776553 457788888887654443
No 254
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=48.27 E-value=7.8 Score=35.58 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=42.5
Q ss_pred CcEEEEEEc-CCccHHHHHHHHHhhhCCCCccEEEEECCEEeecccccc
Q 023198 72 EKTFELKAN-RSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLD 119 (286)
Q Consensus 72 g~~~~l~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~ 119 (286)
|.+..+.+. .+..+..+|.++....+++++.|.+.+.|.-|.|+.+++
T Consensus 292 g~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 292 GQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 888888777 788999999999999999999999999999998885543
No 255
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=45.61 E-value=41 Score=34.38 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=48.8
Q ss_pred cceEEEeecCC-cCcHHHHHHHHHHHhCCCCCceEEE-ecCeEcCCCCccccCCC--CCCCEEEEEc
Q 023198 221 NGRYIILEVAK-FDTVRDVKDKLFREIGQAPDSQRLV-FKRQQLEDDRNLASYKI--VNESIVNLTD 283 (286)
Q Consensus 221 ~g~~~~l~v~~-~~tV~~lK~~I~~~~gi~~~~q~L~-~~g~~L~d~~tL~~y~I--~~~~~l~l~~ 283 (286)
+|.+.+++... ..|+++||..|+.+.|+....|.+. -+|.++..++.|..|.- .+-+.|++..
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFn 69 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFN 69 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEee
Confidence 57777787764 6799999999999999999888765 57889999999988862 2334555553
No 256
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=45.54 E-value=91 Score=20.88 Aligned_cols=60 Identities=8% Similarity=0.118 Sum_probs=37.1
Q ss_pred eeEEeecCCCeEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEE
Q 023198 139 QEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII 208 (286)
Q Consensus 139 ~~I~V~~~~g~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~ 208 (286)
|.|.|+.. ++++....|+.+|.+.+ +.+.....+..++..+..+ .-+.+.+++|+.|.++
T Consensus 1 m~i~vNg~----~~~~~~~~tl~~ll~~l-----~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii 60 (66)
T PRK08053 1 MQILFNDQ----PMQCAAGQTVHELLEQL-----NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLF 60 (66)
T ss_pred CEEEECCe----EEEcCCCCCHHHHHHHc-----CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEE
Confidence 34555433 45566778888875443 4445556667788877432 2344458889998875
No 257
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=45.12 E-value=8.6 Score=35.30 Aligned_cols=51 Identities=27% Similarity=0.339 Sum_probs=44.9
Q ss_pred eecceEEEeecC-CcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccc
Q 023198 219 LLNGRYIILEVA-KFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLA 269 (286)
Q Consensus 219 ~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~ 269 (286)
..+|.++.+.+. .+..+..+|.++....++++.-|.+.+.|..|.|+.+++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 567888888777 788899999999999999999999999999999985543
No 258
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=44.01 E-value=71 Score=29.93 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=50.8
Q ss_pred EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhC--CCCCceEEEec----Ce--EcCCCCccccCCCCCCCEEEEEc
Q 023198 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG--QAPDSQRLVFK----RQ--QLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g--i~~~~q~L~~~----g~--~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
.+.++...| +..+++.++++.+.|-.++-+-.. ..+++..++-+ |. -+..++|+.+.|+..|+.|+|..
T Consensus 2 i~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 2 IFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred eEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 355666555 567899999999999988876653 56677776542 22 13456899999999999999864
No 259
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=43.18 E-value=1e+02 Score=20.83 Aligned_cols=62 Identities=8% Similarity=0.112 Sum_probs=45.5
Q ss_pred EEEEEEcCCccHHHHHHHHHhhhC-C-CCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 74 TFELKANRSDTIENIKFIIEVREG-I-PVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 74 ~~~l~v~~~~tV~~lK~~I~~~~g-i-p~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
...+.+....||.++.+.+..... . ....-.+..+|+...+ .-.+..+.+|+.+.++....|
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsG 76 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSG 76 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCC
Confidence 556778889999999999887652 1 2355677788988877 355677889998887654444
No 260
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=42.44 E-value=32 Score=35.09 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=43.4
Q ss_pred CcEEEEEEcC-CccHHHHHHHHHhhhCCCCccEEEEEC-CEEeeccccccccc
Q 023198 72 EKTFELKANR-SDTIENIKFIIEVREGIPVHEYDIYYG-GKLIESYITLDVLN 122 (286)
Q Consensus 72 g~~~~l~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~~-g~~L~D~~tL~~~~ 122 (286)
|.+.+++.+. ..|+++||..|+.+.|+....|.+.-. |..+.-++.|+.|.
T Consensus 4 GqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 4 GQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhc
Confidence 7888888875 779999999999999999988888654 56688888898887
No 261
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=42.05 E-value=98 Score=21.95 Aligned_cols=51 Identities=6% Similarity=0.121 Sum_probs=34.9
Q ss_pred CcHHHHHHHHHHHhCCCCCceEE--EecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 233 DTVRDVKDKLFREIGQAPDSQRL--VFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 233 ~tV~~lK~~I~~~~gi~~~~q~L--~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
.+.++|+.+.+++.+++...-+| .-.|..++|..=+.. +.+++.+.++..|
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~L~~g 73 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMVLEKG 73 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEEECCC
Confidence 46899999999999998766555 457777766522221 4566677666554
No 262
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=41.67 E-value=27 Score=25.87 Aligned_cols=29 Identities=41% Similarity=0.572 Sum_probs=22.6
Q ss_pred EEEeCCeeecCCccccccccCCCceEEEEe
Q 023198 180 ELFRGGEQLQNLKTLAYYDIKENEVLQIIR 209 (286)
Q Consensus 180 ~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~ 209 (286)
.|-|+|+.|..+.+|++| +..++...+++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiiv 31 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIV 31 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEE
Confidence 477899999999999999 66666555443
No 263
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=41.60 E-value=1.1e+02 Score=22.63 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=30.3
Q ss_pred ecceEEEeecCCcCcHHHHHHHHHHHhCCCC-CceEE
Q 023198 220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAP-DSQRL 255 (286)
Q Consensus 220 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~q~L 255 (286)
.++...++.+..+.||+++-.+++.+..++. ..++|
T Consensus 10 ~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l 46 (97)
T cd01775 10 SDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQL 46 (97)
T ss_pred cCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEE
Confidence 3566678999999999999999999999877 55555
No 264
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=41.15 E-value=1e+02 Score=21.94 Aligned_cols=43 Identities=9% Similarity=-0.005 Sum_probs=34.4
Q ss_pred EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe
Q 023198 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF 257 (286)
Q Consensus 214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~ 257 (286)
++.++. +|.+-.+..+..-|-+.|+++|+..+.+|+...-+.|
T Consensus 2 ~fKv~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 2 QFKSSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eEEEEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 455653 6667777777788899999999999999998777766
No 265
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=40.26 E-value=2.4e+02 Score=24.24 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=30.5
Q ss_pred ccccCCCCeEEEEeecccceeEEe-ecCCCeEEEe----cC-CCccHHhHHHHHHH
Q 023198 120 VLNINNEDTLQMISVPKELQEIFV-QTPTSTVKLE----VR-RAHTVLDVKKMVES 169 (286)
Q Consensus 120 ~~~I~~~s~i~l~~~~~~~~~I~V-~~~~g~~~l~----v~-~~~tV~~lK~~I~~ 169 (286)
+|-+..|+.+.+.+--...+...+ -..+|++.+. ++ ...|+.+++++|+.
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~ 56 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIAS 56 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHH
Confidence 467778888777654433222212 2344544443 44 56899999999998
No 266
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=40.00 E-value=1.3e+02 Score=21.15 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=39.0
Q ss_pred cEEEEEEcCCccHHHHHHHHHhhhCC-----------CCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 73 KTFELKANRSDTIENIKFIIEVREGI-----------PVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 73 ~~~~l~v~~~~tV~~lK~~I~~~~gi-----------p~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
....+++. ..||.++.+.+.++..- .-....+..+|+....... ..+++|+.|.+.....|
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG 87 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG 87 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence 45667775 88999999999876531 0112445567776544321 56888998887755444
No 267
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=39.53 E-value=57 Score=24.45 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=32.6
Q ss_pred ecCCcCcHHHHHHHHHHHhCCCCCc-eEEEecCeEcCCCCcccc
Q 023198 228 EVAKFDTVRDVKDKLFREIGQAPDS-QRLVFKRQQLEDDRNLAS 270 (286)
Q Consensus 228 ~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~g~~L~d~~tL~~ 270 (286)
-|+.+.||+++...|..+..+++++ .-|+.++.....+.|+++
T Consensus 38 Lvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 38 LVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred EEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 3789999999999999999998875 455667777777777643
No 268
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=38.54 E-value=1.3e+02 Score=20.63 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=36.8
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEE
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII 208 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~ 208 (286)
++++....|+.+|-+ ..|++++...+..+|.....+. -.++.++.|+.|.++
T Consensus 11 ~~e~~~~~tv~dLL~-----~l~~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~ievv 62 (68)
T COG2104 11 EVEIAEGTTVADLLA-----QLGLNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEVV 62 (68)
T ss_pred EEEcCCCCcHHHHHH-----HhCCCCceEEEEECCEEccchh-hhhccccCCCEEEEE
Confidence 455666689988733 4577888888889998876432 345567778888774
No 269
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=38.45 E-value=11 Score=30.56 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=32.2
Q ss_pred CeEEecCcccccCCcccccCCCCCceeeeeCCceEEEEE
Q 023198 29 PELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFK 67 (286)
Q Consensus 29 q~l~~~g~~L~d~~~l~~y~i~~~s~l~l~~~~~~i~Vk 67 (286)
-+|-|+|.++...|....|+|+..|.+- ++|.|.+.+.
T Consensus 11 d~ldYdGSqI~~~wA~~~fgI~gdSiVv-frG~mdVk~E 48 (189)
T COG2029 11 DRLDYDGSQIRSAWAYRNFGIKGDSIVV-FRGPMDVKTE 48 (189)
T ss_pred ccccCchhhhhhhHhHhhcCcCCceEEE-Eecccccchh
Confidence 3588999999999999999999888877 5888877654
No 270
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=37.54 E-value=64 Score=23.15 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=31.8
Q ss_pred EEeecCCcCcHHHHHHHHHHHhCC-CCCceEEEe--cCe--EcCCC
Q 023198 225 IILEVAKFDTVRDVKDKLFREIGQ-APDSQRLVF--KRQ--QLEDD 265 (286)
Q Consensus 225 ~~l~v~~~~tV~~lK~~I~~~~gi-~~~~q~L~~--~g~--~L~d~ 265 (286)
-++.|.|..|+++|=.+++.+..+ .|+...|++ +|. .|.|+
T Consensus 16 KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 468899999999999999999997 667777753 333 45544
No 271
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=37.32 E-value=2.2e+02 Score=22.86 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=64.0
Q ss_pred cchHHHHHHHHhhchhcCCCCCCCeEEecCcccccCCcccccCCCCCce--------eeeeCCceEEEEEeCCCCcEEEE
Q 023198 6 TEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSV--------IHNDSGVMKLYFKTPSNEKTFEL 77 (286)
Q Consensus 6 ~dtv~~vK~~i~~~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~--------l~l~~~~~~i~Vk~~~~g~~~~l 77 (286)
-+|.+.+-.+|.+. +|| .|++-.|..|... -.|+=-.|.- |++-...+.+.|+. | .+.+
T Consensus 12 ~eTtEklLN~l~~i--~gI----~R~vIhGp~LPk~---VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~V---G-rI~l 78 (150)
T TIGR03260 12 AETTEKLLNKLYDL--DGI----LRVVIHGQRLPKK---VPYGPARGLPVNHPDRKTIRVKGEDVELRVQV---G-RIIL 78 (150)
T ss_pred HHHHHHHHHHhhcc--CCE----EEEEEECCCCCCC---CCCCcccCCCCCCCcceEEEECCEEEEEEEEE---e-EEEE
Confidence 46888888888777 777 6888888887652 2344333322 22212256667765 3 3556
Q ss_pred EEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecccccccc
Q 023198 78 KANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVL 121 (286)
Q Consensus 78 ~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~ 121 (286)
++...+.+.++++.-++..-++.+ +..|+-+....|++||
T Consensus 79 e~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 79 ELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 666777777777776665544432 2457788999999998
No 272
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=36.71 E-value=39 Score=25.60 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=29.9
Q ss_pred CCCCcchHHHHHHHHhhchhcCCCCCCCeEEecCcc
Q 023198 2 KVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQ 37 (286)
Q Consensus 2 ~v~~~dtv~~vK~~i~~~~~~~i~~~~q~l~~~g~~ 37 (286)
.|++++|+..|-..|+.. .+++.+.|.++|-+.-
T Consensus 50 ~i~~t~tfa~vi~Flkk~--Lkl~as~slflYVN~s 83 (116)
T KOG3439|consen 50 KINPTQTFAKVILFLKKF--LKLQASDSLFLYVNNS 83 (116)
T ss_pred EeCcchhhHHHHHHHHHH--hCCcccCeEEEEEcCc
Confidence 478999999999999999 9999999999876543
No 273
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=36.54 E-value=1.3e+02 Score=21.05 Aligned_cols=61 Identities=11% Similarity=0.153 Sum_probs=36.3
Q ss_pred eEEEeecCCcCcHHHHHHHHHHHhC-CCCCceEEEe------cCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 223 RYIILEVAKFDTVRDVKDKLFREIG-QAPDSQRLVF------KRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 223 ~~~~l~v~~~~tV~~lK~~I~~~~g-i~~~~q~L~~------~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+.|..-..++.|+.+|+..|.+++. +-|+...+.- .|=.|+.+.+..+- ..++++|.++.+
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~ 70 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILK 70 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEec
Confidence 3455668899999999999999986 3333323321 23333333344443 246777766654
No 274
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=36.36 E-value=1.3e+02 Score=21.31 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=31.6
Q ss_pred eeEEeec-CCC-eEEEecCCCccHHhHHHHHHHHhcCCCC--CCeEEE
Q 023198 139 QEIFVQT-PTS-TVKLEVRRAHTVLDVKKMVESMRICIPS--EDCELF 182 (286)
Q Consensus 139 ~~I~V~~-~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~--~~q~L~ 182 (286)
++|+... .++ ..++.|.+++|+.+|-..+.+ +.+++. ..+.|+
T Consensus 5 lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~-k~~l~~~~~~y~L~ 51 (90)
T smart00314 5 LRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLE-KFHLTDDPEEYVLV 51 (90)
T ss_pred EEEecccCCCCcEEEEEECCCCCHHHHHHHHHH-HhCCCCCcccEEEE
Confidence 3444433 335 778999999999999999999 998874 455554
No 275
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=36.35 E-value=1e+02 Score=22.03 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHHhCCCCCc--eEE--EecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 233 DTVRDVKDKLFREIGQAPDS--QRL--VFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 233 ~tV~~lK~~I~~~~gi~~~~--q~L--~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
.+.++|+.+.+++++++... -+| .-.|.+++|..=+.. +.+++.+.++-.|
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~l~~L~~g 75 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLC--LPPNTKFVLLAEN 75 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhh--CCCCcEEEEECCC
Confidence 46899999999999998432 444 457888876522221 3556666655444
No 276
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=36.18 E-value=1e+02 Score=24.82 Aligned_cols=107 Identities=13% Similarity=0.224 Sum_probs=62.7
Q ss_pred EEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeE----EEEeecccceeEEeecCCCeEEEe
Q 023198 78 KANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTL----QMISVPKELQEIFVQTPTSTVKLE 153 (286)
Q Consensus 78 ~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i----~l~~~~~~~~~I~V~~~~g~~~l~ 153 (286)
.+-..+|.+.|-.++.+..|| .|.+-.|..|...- .||-..|.-+ .-.+... |-.|-.+...|.+.++
T Consensus 9 R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~-g~~veL~V~vGri~le 80 (153)
T PF02505_consen 9 RLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVG-GEEVELTVKVGRIILE 80 (153)
T ss_pred hcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEEC-CEEEEEEEEEeEEEEE
Confidence 344578999999998887775 47777888775322 2443333211 1111111 2222222233577788
Q ss_pred cCC-CccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCcccccc
Q 023198 154 VRR-AHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYY 197 (286)
Q Consensus 154 v~~-~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y 197 (286)
+.. .+.+..+++.-++ .. |. .+.+ ..|+-+....|++||
T Consensus 81 le~~~~~ie~I~~iCee-~l--pf-~y~i-~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 81 LEDEEDVIEKIREICEE-VL--PF-GYDI-KEGKFIRTKPTVTDY 120 (153)
T ss_pred ecCcHHHHHHHHHHHHH-hC--CC-ceEe-eeeEEeccCCchhhh
Confidence 888 6667777666555 33 32 2222 258889999999997
No 277
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=35.77 E-value=54 Score=22.63 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=29.8
Q ss_pred CcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 233 DTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 233 ~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
+|+++|.+..++++|++ ..-.+.-.|-+.+|=.. |.+|+.|+++
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~-----IRDgD~L~~~ 69 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDV-----IRDGDHLYLV 69 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEE-----EEcCCEEEEC
Confidence 79999999999999997 33334445555544211 4677777763
No 278
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=35.38 E-value=51 Score=23.68 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=39.1
Q ss_pred eecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcC--------------CCCccccCCCCCCCEEEEEcC
Q 023198 227 LEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLE--------------DDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 227 l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~--------------d~~tL~~y~I~~~~~l~l~~~ 284 (286)
++++++.|..+|-+.++++-.+....=.|..+++.|. -+++|.+. +.+|..|.+.+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD~ 71 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTDP 71 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEET
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEECC
Confidence 5789999999999999998544433333434444332 34788888 889999888764
No 279
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=35.03 E-value=1.8e+02 Score=21.37 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=42.1
Q ss_pred eeEEeecC-CC-eEEEecCCCccHHhHHHHHHHHh--cCCCCC----CeEEEeCCe--eecCCccccccc-----cCCCc
Q 023198 139 QEIFVQTP-TS-TVKLEVRRAHTVLDVKKMVESMR--ICIPSE----DCELFRGGE--QLQNLKTLAYYD-----IKENE 203 (286)
Q Consensus 139 ~~I~V~~~-~g-~~~l~v~~~~tV~~lK~~I~~~~--~gip~~----~q~L~~~g~--~L~d~~tL~~y~-----i~~~~ 203 (286)
+.|.|... .+ .+++.++.++|+.++-+++-. + .+..+. ++.|--.|. -|..+..|.+|. ++.+.
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~-k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~ 95 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALK-KKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGK 95 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHH-HHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT-
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHH-HHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCC
Confidence 44555545 34 889999999999998877766 4 222222 456665565 466788888876 45566
Q ss_pred eEEEEe
Q 023198 204 VLQIIR 209 (286)
Q Consensus 204 ~i~l~~ 209 (286)
.++|.+
T Consensus 96 ~~~L~L 101 (106)
T PF00794_consen 96 DPHLVL 101 (106)
T ss_dssp -EEEEE
T ss_pred CcEEEE
Confidence 666654
No 280
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=34.95 E-value=1.4e+02 Score=19.81 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=38.5
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
|+.+.+ ..+.|+.++.+. .++++..-.+..+|+....+ .-.++-+++|+.+.++-...|
T Consensus 5 g~~~~~--~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~G 63 (64)
T TIGR01683 5 GEPVEV--EDGLTLAALLES----LGLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGG 63 (64)
T ss_pred CeEEEc--CCCCcHHHHHHH----cCCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence 665544 566789988876 46777666777888866321 123567889998887644333
No 281
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=34.84 E-value=1.7e+02 Score=21.51 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=31.4
Q ss_pred EeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEE
Q 023198 67 KTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDI 105 (286)
Q Consensus 67 k~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L 105 (286)
+... |.+..+.|+.+.|..+++.++.+..+++.. ..+
T Consensus 18 ~Y~G-G~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~l 54 (97)
T cd06410 18 RYVG-GETRIVSVDRSISFKELVSKLSELFGAGVV-VTL 54 (97)
T ss_pred EEcC-CceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEE
Confidence 4456 899999999999999999999999988865 444
No 282
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=34.79 E-value=51 Score=23.43 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 239 KDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 239 K~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
|+.+.++.++..+|.- +.+.+|-...+||.++|+.|.+.+.+
T Consensus 23 ~~~lL~~y~i~~~qLP-----~I~~~DPv~r~~g~k~GdVvkI~R~S 64 (79)
T PRK09570 23 AKKLLKEYGIKPEQLP-----KIKASDPVVKAIGAKPGDVIKIVRKS 64 (79)
T ss_pred HHHHHHHcCCCHHHCC-----ceeccChhhhhcCCCCCCEEEEEECC
Confidence 4566777888887744 34566677788999999999998765
No 283
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=34.33 E-value=1.9e+02 Score=21.30 Aligned_cols=75 Identities=9% Similarity=0.175 Sum_probs=46.5
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhh--hCCCC---c-cEEEEECCEE--eeccccccccc-----cCC
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVR--EGIPV---H-EYDIYYGGKL--IESYITLDVLN-----INN 125 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~--~gip~---~-~q~L~~~g~~--L~D~~tL~~~~-----I~~ 125 (286)
.+.+.|.|.....+..+++.++++.|+.++-+.+-.+ .+..+ . +..|=-.|++ |..+.+|.+|. +..
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~ 93 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKR 93 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHC
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhc
Confidence 3466777877743789999999999999999886655 22222 1 4555455653 66778888885 345
Q ss_pred CCeEEEEe
Q 023198 126 EDTLQMIS 133 (286)
Q Consensus 126 ~s~i~l~~ 133 (286)
+..++|.+
T Consensus 94 ~~~~~L~L 101 (106)
T PF00794_consen 94 GKDPHLVL 101 (106)
T ss_dssp T--EEEEE
T ss_pred CCCcEEEE
Confidence 55555554
No 284
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=34.29 E-value=1.3e+02 Score=21.31 Aligned_cols=48 Identities=8% Similarity=0.227 Sum_probs=31.5
Q ss_pred ccHHhHHHHHHHHhcCCCCCCeEEEe--CCeeecCCccccccccCCCceEEEEe
Q 023198 158 HTVLDVKKMVESMRICIPSEDCELFR--GGEQLQNLKTLAYYDIKENEVLQIIR 209 (286)
Q Consensus 158 ~tV~~lK~~I~~~~~gip~~~q~L~~--~g~~L~d~~tL~~y~i~~~~~i~l~~ 209 (286)
.+..+|+.+..+ +.+++.+..+|+. +|...+|+.-+.. -+..|..+++
T Consensus 21 ~sL~eL~~K~~~-~l~~~~~~~~lvL~eDGT~VddEeyF~t---Lp~nT~lm~L 70 (78)
T PF02017_consen 21 SSLEELLEKACD-KLQLPEEPVRLVLEEDGTEVDDEEYFQT---LPDNTVLMLL 70 (78)
T ss_dssp SSHHHHHHHHHH-HHT-SSSTCEEEETTTTCBESSCHHHCC---SSSSEEEEEE
T ss_pred CCHHHHHHHHHH-HhCCCCcCcEEEEeCCCcEEccHHHHhh---CCCCCEEEEE
Confidence 589999999999 9999987777764 5666665533322 2344555544
No 285
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=34.14 E-value=1.1e+02 Score=22.16 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=35.0
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccE-EEEECCEEee
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEY-DIYYGGKLIE 113 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q-~L~~~g~~L~ 113 (286)
...+++.|++..|=-++|+.++...|+++..- .+.+.|+.-.
T Consensus 20 ~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 20 PNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 36789999999999999999999999999764 4467787543
No 286
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=33.95 E-value=1.6e+02 Score=21.41 Aligned_cols=36 Identities=6% Similarity=0.056 Sum_probs=28.3
Q ss_pred CcEEEEEEcC-----CccHHHHHHHHHhhhCCCC-ccEEEEE
Q 023198 72 EKTFELKANR-----SDTIENIKFIIEVREGIPV-HEYDIYY 107 (286)
Q Consensus 72 g~~~~l~v~~-----~~tV~~lK~~I~~~~gip~-~~q~L~~ 107 (286)
|....+.+.. +.+...|+.+|++...+|+ ....|.|
T Consensus 9 ~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y 50 (91)
T cd06398 9 GTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTY 50 (91)
T ss_pred CEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEE
Confidence 6677777764 6899999999999999997 4455555
No 287
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=33.45 E-value=4e+02 Score=24.82 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=91.8
Q ss_pred CCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccceeEEeecCC---CeEEEecCC-
Q 023198 81 RSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEIFVQTPT---STVKLEVRR- 156 (286)
Q Consensus 81 ~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~I~V~~~~---g~~~l~v~~- 156 (286)
..-|+.++++.|+.+.. .| -....+.+.+....+.+|+|...- |.+++ ..
T Consensus 137 aG~T~~e~~~~I~~~L~----------------------~~--~~~PqV~V~v~~~~s~~V~V~GeV~~PG~~~l--~~~ 190 (379)
T PRK15078 137 AGKTVTEIRSDITGRLA----------------------KY--IESPQVDVNIAAFRSQKAYVTGEVNKSGQQAI--TNV 190 (379)
T ss_pred CCCCHHHHHHHHHHHHH----------------------Hh--ccCCeEEEEEccCCceEEEEEceecCCeEEEe--cCC
Confidence 47788999988888641 11 112233344333344567764321 23333 32
Q ss_pred CccHHhHHHHHHHHhcCCCCC----CeEEEeCCeee--------cCCccccccccCCCceEEEEeeeeeEEEEEeecceE
Q 023198 157 AHTVLDVKKMVESMRICIPSE----DCELFRGGEQL--------QNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNGRY 224 (286)
Q Consensus 157 ~~tV~~lK~~I~~~~~gip~~----~q~L~~~g~~L--------~d~~tL~~y~i~~~~~i~l~~~~~~~i~vk~~~g~~ 224 (286)
..|+.++ |.. .-|+... .-.|..+|+.. .++..-.+.-+++||+|++.......++|-..-++.
T Consensus 191 ~~tllda---Ia~-AGG~~~~a~~~~V~l~R~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~~~~~~v~V~GeV~~P 266 (379)
T PRK15078 191 PLTILDA---INA-AGGLTDDADWRNVVLTHNGKEERISLQALMQNGDLSQNRLLYPGDILYVPRNDDLKVFVMGEVKKQ 266 (379)
T ss_pred CccHHHH---HHH-ccCCCcccccceEEEEECCeEEEEEHHHHHhcCCcccCceeCCCCEEEECCCCCcEEEEeeecccc
Confidence 3566554 444 4555533 24455566632 223334556689999999865444556665544555
Q ss_pred EEeecC-CcCcHHHHHHHHHHHhCCCC---C-ceEEEecCeE----------------cCCCCcc---ccCCCCCCCEEE
Q 023198 225 IILEVA-KFDTVRDVKDKLFREIGQAP---D-SQRLVFKRQQ----------------LEDDRNL---ASYKIVNESIVN 280 (286)
Q Consensus 225 ~~l~v~-~~~tV~~lK~~I~~~~gi~~---~-~q~L~~~g~~----------------L~d~~tL---~~y~I~~~~~l~ 280 (286)
-.+.+. ...|+.+.-. ..-|+.. + .+.+++.+.. +.|...+ ..+-++++|+|+
T Consensus 267 g~~~~~~~~~TL~~Al~---~AGGl~~~~ad~~~V~V~R~~~~~~~~~~~~~~vy~ldl~~~~~~~la~~f~Lqp~DiVy 343 (379)
T PRK15078 267 STLKMDRSGMTLTEALG---NAEGIDQTTADATGIFVIRPLKGEGGRNGKIANIYQLDASDATALVMGTEFRLQPYDIVY 343 (379)
T ss_pred eEEecCCCCCCHHHHHH---hcCCCCccccCcccEEEEECCCCccccCCCcceEEEEeCCChhhhhcccCCccCCCCEEE
Confidence 556664 5778877544 4445432 2 3444443211 2221111 357789999999
Q ss_pred EEcCC
Q 023198 281 LTDLG 285 (286)
Q Consensus 281 l~~~~ 285 (286)
+-..+
T Consensus 344 V~~s~ 348 (379)
T PRK15078 344 VTTAP 348 (379)
T ss_pred ECCCc
Confidence 86543
No 288
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=33.01 E-value=1.1e+02 Score=23.00 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=27.6
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCC
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAP 250 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~ 250 (286)
++|-..+|.+..+.|..-.+-.+++.++-.++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 445567899999999999999999999999999987
No 289
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=32.90 E-value=1.5e+02 Score=27.05 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=37.4
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEe
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIR 209 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~ 209 (286)
.+++..+.||.++- + ..+++++...+..||+.+.. ....++-+++|+.|.++-
T Consensus 9 ~~el~e~~TL~dLL----~-~L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~ 61 (326)
T PRK11840 9 PRQVPAGLTIAALL----A-ELGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVH 61 (326)
T ss_pred EEecCCCCcHHHHH----H-HcCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEE
Confidence 35566777888763 2 45788888888899988743 234556688899988854
No 290
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=32.67 E-value=3.2e+02 Score=23.45 Aligned_cols=205 Identities=12% Similarity=0.087 Sum_probs=99.5
Q ss_pred ccCCCCCceeee-eC--CceEEEEEeCCCCcEEEE----EEc-CCccHHHHHHHHHhhhCCCCccEEEEECCEEeecccc
Q 023198 46 DYGIPNNSVIHN-DS--GVMKLYFKTPSNEKTFEL----KAN-RSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT 117 (286)
Q Consensus 46 ~y~i~~~s~l~l-~~--~~~~i~Vk~~~~g~~~~l----~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~t 117 (286)
+|-|..|.+|.+ .. +.....+....+|. +.+ .+. ...|+.++.+.|+.+..-.
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~-I~~P~iG~v~v~G~T~~e~~~~I~~~l~~~------------------ 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGS-ITFPLIGEVKLGGETPAAAERKIASRLSKG------------------ 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCe-EEeeecceEEECCCCHHHHHHHHHHHHhhc------------------
Confidence 477788888877 11 11111222222133 222 233 5789999999998864210
Q ss_pred ccccccCCCCeEEEEeecccceeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCC--eEEE---eCCee----
Q 023198 118 LDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSED--CELF---RGGEQ---- 187 (286)
Q Consensus 118 L~~~~I~~~s~i~l~~~~~~~~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~--q~L~---~~g~~---- 187 (286)
+......+.+.+....+..|+|...-. .=.+.+....|+.++ |.. .-|+.+.. ...+ .+|+.
T Consensus 62 ----~~~~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~a---i~~-AGG~~~~~~~~~~i~~~~~g~~~~~~ 133 (239)
T TIGR03028 62 ----GFVKQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDV---LAL-AGGVTPDGADVITLVREREGKIFRKQ 133 (239)
T ss_pred ----CcccCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHH---HHH-cCCCCccCCCeEEEEEecCCeEEEEE
Confidence 011122233333333345666642211 112344555777764 444 44555432 1211 24443
Q ss_pred ------ecCCccccccccCCCceEEEEeeeeeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCC--c--eEEEe
Q 023198 188 ------LQNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPD--S--QRLVF 257 (286)
Q Consensus 188 ------L~d~~tL~~y~i~~~~~i~l~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~--~--q~L~~ 257 (286)
+..+..-.++-+++||+|++...+. ++|-..-++.-.+.+.++.|+.+ .|+..-|+... . -.++-
T Consensus 134 idl~~l~~~g~~~~ni~L~~GD~I~V~~~~~--v~v~G~V~~pg~~~~~~~~tl~~---al~~aGG~~~~a~~~~v~i~R 208 (239)
T TIGR03028 134 IDFPALFNPGGDNENILVAGGDIIYVDRAPV--FYIYGEVQRPGAYRLERNMTVMQ---ALAQGGGLTPRGTERGIRVMR 208 (239)
T ss_pred EEHHHHHhcCCCcCCcEEcCCCEEEEcCCcc--EEEEeEccCCeEEEeCCCCCHHH---HHHhcCCCCcccCcceEEEEE
Confidence 2233344567799999999865433 34422222223455667776655 55555554332 2 22321
Q ss_pred ---cCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 258 ---KRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 258 ---~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+|..-.-...+.+ .+++||+|++-.
T Consensus 209 ~~~~g~~~~~~~~~~~-~l~~gDii~V~~ 236 (239)
T TIGR03028 209 RDDKGAVEEVSGELGD-LVQPDDVIYVRE 236 (239)
T ss_pred ECCCCcEEEEecCCCc-ccCCCCEEEEeC
Confidence 3332111122222 489999999753
No 291
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=32.02 E-value=1.1e+02 Score=23.02 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=33.2
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCC-eEEEeCCeeecCCccccc
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSED-CELFRGGEQLQNLKTLAY 196 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~-q~L~~~g~~L~d~~tL~~ 196 (286)
.+-|+.+.||.++...|.. +..+++++ ..|..++.....+.++++
T Consensus 36 KfLvp~~~tv~qf~~~ir~-rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 36 KFLVPKDLTVGQFVYIIRK-RLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEEEETTSBHHHHHHHHHH-HTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred EEEEcCCCchhhHHHHhhh-hhcCCCCceEEEEEcCcccchhhHHHH
Confidence 3457889999999999999 99998876 445557766677777776
No 292
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=31.79 E-value=1.7e+02 Score=21.15 Aligned_cols=38 Identities=5% Similarity=0.024 Sum_probs=31.5
Q ss_pred EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCcc
Q 023198 64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHE 102 (286)
Q Consensus 64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~ 102 (286)
|.|...+ |..-.+.|+...|+.++=+.+..+.+...+.
T Consensus 5 vkv~~~D-g~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~ 42 (85)
T cd01787 5 VKVYSED-GASKSLEVDERMTARDVCQLLVDKNHCQDDS 42 (85)
T ss_pred EEEEecC-CCeeEEEEcCCCcHHHHHHHHHHHhCCCCCC
Confidence 4555677 9999999999999999999999988766543
No 293
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=30.61 E-value=1e+02 Score=22.49 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=33.1
Q ss_pred EEcCCccHHHHHHHHHhhhCCCCccEEEEECCEE-------eeccc---cc--cccccCCCCeEEEEeeccc
Q 023198 78 KANRSDTIENIKFIIEVREGIPVHEYDIYYGGKL-------IESYI---TL--DVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 78 ~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~-------L~D~~---tL--~~~~I~~~s~i~l~~~~~~ 137 (286)
+++...||.++=+.+.+.. |..+.+++..+.. |-++. .+ .++.+++|+.+.+.....|
T Consensus 24 ~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~G 93 (94)
T cd01764 24 DGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHG 93 (94)
T ss_pred cCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCC
Confidence 3335679999988887765 3444444443211 22222 23 3567888888877654444
No 294
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=30.61 E-value=58 Score=22.83 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 239 KDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 239 K~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
++++.++.++.+++.- +.+.+|--...||.++|+.+.+.+.+
T Consensus 20 ~~~lL~~y~i~~~qLP-----~I~~~DPv~r~~g~k~GdVvkI~R~S 61 (74)
T PF01191_consen 20 KKELLKKYNIKPEQLP-----KILSSDPVARYLGAKPGDVVKIIRKS 61 (74)
T ss_dssp HHHHHHHTT--TTCSS-----EEETTSHHHHHTT--TTSEEEEEEEE
T ss_pred HHHHHHHhCCChhhCC-----cccccChhhhhcCCCCCCEEEEEecC
Confidence 4456667888887744 45566667788999999999988764
No 295
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=29.85 E-value=1.8e+02 Score=20.31 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=27.3
Q ss_pred eEEEecCCCccHHhHHHHHHHHhcCCC--CCCeEEE
Q 023198 149 TVKLEVRRAHTVLDVKKMVESMRICIP--SEDCELF 182 (286)
Q Consensus 149 ~~~l~v~~~~tV~~lK~~I~~~~~gip--~~~q~L~ 182 (286)
..++.|..++|..+|-..+.+ +.++. ++.+.|+
T Consensus 14 ~kti~V~~~~t~~~Vi~~~l~-k~~l~~~~~~y~L~ 48 (87)
T cd01768 14 YKTLRVSKDTTAQDVIQQLLK-KFGLDDDPEDYALV 48 (87)
T ss_pred EEEEEECCCCCHHHHHHHHHH-HhCCcCCcccEEEE
Confidence 678999999999999999999 88887 4445555
No 296
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=29.22 E-value=1.7e+02 Score=19.19 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=35.1
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+|+.+. +.+..|+.++-+.+ +++ ....+..+|...... .-.+.-+++||.|.++.
T Consensus 6 Ng~~~~--~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 6 NQQTLS--LPDGATVADALAAY----GAR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQ 60 (65)
T ss_pred CCEEEE--CCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEe
Confidence 566654 56778899888655 444 234566777776422 23344588899998864
No 297
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=28.90 E-value=1.6e+02 Score=20.94 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHHhCCCCC-ceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 233 DTVRDVKDKLFREIGQAPD-SQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 233 ~tV~~lK~~I~~~~gi~~~-~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
.+.++|+.+.+++++++.. ...|.-.|.+++|..=+.. +.+++.+.++-.|
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~t--Lp~nt~l~vL~~g 72 (79)
T cd06538 21 DSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQA--LADNTVFMVLGKG 72 (79)
T ss_pred CCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhh--CCCCcEEEEECCC
Confidence 4689999999999999632 2444457777766522211 3455555555443
No 298
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=28.85 E-value=2.3e+02 Score=20.48 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=42.1
Q ss_pred eEEEecCCCccHHhHHHHHHHHhcCC--CC-C--CeEEEeCC--eeecCCccccccccCCCceEEEEe
Q 023198 149 TVKLEVRRAHTVLDVKKMVESMRICI--PS-E--DCELFRGG--EQLQNLKTLAYYDIKENEVLQIIR 209 (286)
Q Consensus 149 ~~~l~v~~~~tV~~lK~~I~~~~~gi--p~-~--~q~L~~~g--~~L~d~~tL~~y~i~~~~~i~l~~ 209 (286)
..-+.|+..+|+.++-+++..+..|. ++ . ..++.++| ..+..+-++++-+|.+-+.+.+..
T Consensus 16 ~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 16 LQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 55578999999999999998744453 33 2 34566788 899999999999999988887754
No 299
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=28.52 E-value=1.8e+02 Score=23.09 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=56.3
Q ss_pred cCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecccc------------ccccccCCCCeEEEEeecccceeEEeecCC
Q 023198 80 NRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYIT------------LDVLNINNEDTLQMISVPKELQEIFVQTPT 147 (286)
Q Consensus 80 ~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~t------------L~~~~I~~~s~i~l~~~~~~~~~I~V~~~~ 147 (286)
-|+..|+.|-.+.+-.-....+.-.+.++|+.|++... |..|.+.+|..=...-...+|-++.+.+..
T Consensus 22 lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~tKk 101 (149)
T PF10787_consen 22 LPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDTKK 101 (149)
T ss_pred CcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEecc
Confidence 36777888888777666677777788999999987654 345666666642222222345678888887
Q ss_pred C--eEEEecCCC-ccHHhHHHH
Q 023198 148 S--TVKLEVRRA-HTVLDVKKM 166 (286)
Q Consensus 148 g--~~~l~v~~~-~tV~~lK~~ 166 (286)
| -+.+-+-+. +-|.-+|+.
T Consensus 102 GK~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 102 GKKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred CcceeEEEEEecccHHHHHHHh
Confidence 7 555555443 356666554
No 300
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.84 E-value=1.9e+02 Score=25.75 Aligned_cols=71 Identities=14% Similarity=0.306 Sum_probs=51.8
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEe---eccccccccccCCCCeEEE
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLI---ESYITLDVLNINNEDTLQM 131 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L---~D~~tL~~~~I~~~s~i~l 131 (286)
....+-|+.++ |+++...+++..|...|..-|+...|..++-..+. |--+.+ +-.++|...++..-+++.+
T Consensus 209 s~crlQiRl~D-G~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPD-GQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCC-CCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 35678889888 99999999999999999999999887655333332 333333 2356788888877776654
No 301
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=27.25 E-value=1.8e+02 Score=20.78 Aligned_cols=51 Identities=6% Similarity=0.119 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHHHhCCCCC-ceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 233 DTVRDVKDKLFREIGQAPD-SQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 233 ~tV~~lK~~I~~~~gi~~~-~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
.+.++|+.+.+++.+++.. ...|.-.|..++|..=+.. +.+++.+.++..|
T Consensus 21 ~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~t--LpdnT~lm~L~~g 72 (81)
T cd06537 21 ASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFEL--LEDDTCLMVLEQG 72 (81)
T ss_pred cCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhh--CCCCCEEEEECCC
Confidence 4689999999999999733 2334457777765422211 4566677666554
No 302
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=27.15 E-value=1.1e+02 Score=28.96 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=61.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEE--EecCeEcCC---CCccccCCCCCCCEEEEEcCC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRL--VFKRQQLED---DRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L--~~~g~~L~d---~~tL~~y~I~~~~~l~l~~~~ 285 (286)
..+.|+.++|.+++=..+.++-.+.++..+...-++.....-| .|..++..+ ++||.+..+-+...|-++.++
T Consensus 315 ~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 315 VRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred eEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 5677888999999999999999999999999888888888777 688888854 379999999988888777654
No 303
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=27.14 E-value=1.4e+02 Score=21.80 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=33.6
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEE-EEECCEE
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYD-IYYGGKL 111 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~-L~~~g~~ 111 (286)
...+++.|++..|=.++|+.++...|+++..-+ +...|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 468999999999999999999999999987643 4566664
No 304
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=26.60 E-value=2e+02 Score=23.06 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=62.2
Q ss_pred EEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEE----EeecccceeEEeecCCCeEEE
Q 023198 77 LKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQM----ISVPKELQEIFVQTPTSTVKL 152 (286)
Q Consensus 77 l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l----~~~~~~~~~I~V~~~~g~~~l 152 (286)
-.+-..+|.+.|-.+++...|| .|++-.|..|...- -||-..|..+.- .+... |-.|-.+...|.+.+
T Consensus 7 ~R~L~~eTtEklLN~l~~i~gI----~R~vIhGp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~-g~~veL~V~VGrI~l 78 (150)
T TIGR03260 7 HRLLKAETTEKLLNKLYDLDGI----LRVVIHGQRLPKKV---PYGPARGLPVNHPDRKTIRVK-GEDVELRVQVGRIIL 78 (150)
T ss_pred hhhCCHHHHHHHHHHhhccCCE----EEEEEECCCCCCCC---CCCcccCCCCCCCcceEEEEC-CEEEEEEEEEeEEEE
Confidence 3344578889998888877775 47777787775332 244333321111 11111 222222223357777
Q ss_pred ecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccc
Q 023198 153 EVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYD 198 (286)
Q Consensus 153 ~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~ 198 (286)
++...+.+..+++.-.+ . +|. .+. +..|+-+....|++||-
T Consensus 79 e~~~~~~i~~I~eiC~e-~--~pF-~y~-i~~g~f~r~~~TvtDY~ 119 (150)
T TIGR03260 79 ELEDEDIVEEIEEICKE-M--LPF-GYE-VRVGKFLRTKPTVTDYI 119 (150)
T ss_pred EecCHHHHHHHHHHHHh-h--CCC-ceE-eeeeeEeecCCchhhhh
Confidence 87777777887766655 2 332 222 22466788999999973
No 305
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=26.45 E-value=1.1e+02 Score=23.34 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=37.6
Q ss_pred eecCCcCcHHHHHHHHHHHhCCCCCceE-EEecCeEcCCCCccc----cCCCCCCCEEEEE
Q 023198 227 LEVAKFDTVRDVKDKLFREIGQAPDSQR-LVFKRQQLEDDRNLA----SYKIVNESIVNLT 282 (286)
Q Consensus 227 l~v~~~~tV~~lK~~I~~~~gi~~~~q~-L~~~g~~L~d~~tL~----~y~I~~~~~l~l~ 282 (286)
+-|+.+.||+++...|..+.++.+++-- |..++.....+.++. .|+- .+..|+|.
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyl~ 104 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKD-EDGFLYMT 104 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCC-CCCEEEEE
Confidence 3599999999999999999999888744 444655445555553 3332 34466654
No 306
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=26.34 E-value=22 Score=28.94 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=30.1
Q ss_pred EEEECCEEeeccccccccccCCCCeEEEEeecccceeEEee
Q 023198 104 DIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEIFVQ 144 (286)
Q Consensus 104 ~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~I~V~ 144 (286)
+|-|.|.+++..+..+.|||+..|.+.. +|.|.|.++
T Consensus 12 ~ldYdGSqI~~~wA~~~fgI~gdSiVvf----rG~mdVk~E 48 (189)
T COG2029 12 RLDYDGSQIRSAWAYRNFGIKGDSIVVF----RGPMDVKTE 48 (189)
T ss_pred cccCchhhhhhhHhHhhcCcCCceEEEE----ecccccchh
Confidence 4679999999999999999999886654 466777764
No 307
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=25.80 E-value=2.2e+02 Score=25.97 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=41.3
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+|+.+. +....|+.+|-+ ..++++....+..+|+.+. .....++-+++|+.|.++.
T Consensus 6 NGk~~e--l~e~~TL~dLL~----~L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~ 61 (326)
T PRK11840 6 NGEPRQ--VPAGLTIAALLA----ELGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVH 61 (326)
T ss_pred CCEEEe--cCCCCcHHHHHH----HcCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEE
Confidence 567644 566778887764 4588988888899999885 2344567789999988763
No 308
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=25.66 E-value=1.2e+02 Score=23.07 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=33.8
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEe-CCeeecCCccccc
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELFR-GGEQLQNLKTLAY 196 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~-~g~~L~d~~tL~~ 196 (286)
.+-|+.+.||.++...|.. +..+++++-.+.| ++.....+.++++
T Consensus 44 KflVp~~~tv~~f~~~irk-~l~l~~~~slfl~Vn~~~p~~~~~~~~ 89 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRK-RIQLRPEKALFLFVNNSLPPTSATMSQ 89 (112)
T ss_pred eEEecCCCCHHHHHHHHHH-HhCCCccceEEEEECCccCCchhHHHH
Confidence 3458999999999999999 9899988755444 6544456666665
No 309
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=25.15 E-value=1.9e+02 Score=20.32 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=29.4
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEE
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDI 105 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L 105 (286)
..++++.|++..|=.++|+.|+..+|+.+..-+-
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 3689999999999999999999999998865443
No 310
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=24.99 E-value=3.2e+02 Score=24.58 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=56.5
Q ss_pred CCCCceeeeeCCceEEEEEeCCCCcEEEEEEcC------CccH---HHHHHHHHhhhCCCCccEEEEECC-EEeec--cc
Q 023198 49 IPNNSVIHNDSGVMKLYFKTPSNEKTFELKANR------SDTI---ENIKFIIEVREGIPVHEYDIYYGG-KLIES--YI 116 (286)
Q Consensus 49 i~~~s~l~l~~~~~~i~Vk~~~~g~~~~l~v~~------~~tV---~~lK~~I~~~~gip~~~q~L~~~g-~~L~D--~~ 116 (286)
|++||.||+.++-|-++|.- |+...+-.++ ++|+ ..+|.- +.-+.++-.|.++|-+ ++..- --
T Consensus 36 I~nGs~l~Vrp~qmamfvn~---G~I~dvf~e~G~y~v~~~t~P~L~tlk~~--kfgf~sp~k~eVyfvntqe~~girwG 110 (345)
T COG4260 36 IQNGSILHVRPNQMAMFVNG---GQIADVFAEAGYYKVTTQTLPSLFTLKRF--KFGFESPFKQEVYFVNTQEIKGIRWG 110 (345)
T ss_pred eccCcEEEEecCceEEEEcC---CEEEeeecCCceeEeeecccchhhhhhcc--eecCCCcccceEEEEecceecceecC
Confidence 99999999866667777753 5544433322 1122 233321 1235677788886643 33220 11
Q ss_pred cccccccCC-CCeEEEEeecccceeEEeecCCC-eEEE-ecCCCccHHhHHHHHHH
Q 023198 117 TLDVLNINN-EDTLQMISVPKELQEIFVQTPTS-TVKL-EVRRAHTVLDVKKMVES 169 (286)
Q Consensus 117 tL~~~~I~~-~s~i~l~~~~~~~~~I~V~~~~g-~~~l-~v~~~~tV~~lK~~I~~ 169 (286)
|-...++.+ +..-.|.+|-.|...+.|..+-- .-.+ -..+-++|.|+++++-.
T Consensus 111 T~qpin~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls 166 (345)
T COG4260 111 TPQPINYFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLS 166 (345)
T ss_pred CCCCeecccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHH
Confidence 212222222 33334455555554444433211 0000 12344688888887754
No 311
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=24.84 E-value=68 Score=22.71 Aligned_cols=26 Identities=23% Similarity=0.274 Sum_probs=19.8
Q ss_pred EEEecCCCccHHhHHHHHHHHhcCCC
Q 023198 150 VKLEVRRAHTVLDVKKMVESMRICIP 175 (286)
Q Consensus 150 ~~l~v~~~~tV~~lK~~I~~~~~gip 175 (286)
+++++..+.|+.++|+++=+.....|
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~P 27 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYP 27 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGST
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCC
Confidence 57889999999999998866355555
No 312
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=24.20 E-value=1.5e+02 Score=21.49 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=34.1
Q ss_pred eEEEeecCCcCcHHHHHHHHHHHhCCCCCceE-EEecCeEcC
Q 023198 223 RYIILEVAKFDTVRDVKDKLFREIGQAPDSQR-LVFKRQQLE 263 (286)
Q Consensus 223 ~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~-L~~~g~~L~ 263 (286)
..+++.|+++.|=.++|+.|+..+|+++..-+ +.+.|+.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 57889999999999999999999999987665 456666543
No 313
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=23.75 E-value=2.4e+02 Score=19.97 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHhCCCCCce--EEEecCeEcCCCCccccCC--CCCCCEEEEEcCC
Q 023198 233 DTVRDVKDKLFREIGQAPDSQ--RLVFKRQQLEDDRNLASYK--IVNESIVNLTDLG 285 (286)
Q Consensus 233 ~tV~~lK~~I~~~~gi~~~~q--~L~~~g~~L~d~~tL~~y~--I~~~~~l~l~~~~ 285 (286)
.+.++|+.+.+++..++...- .|.-.|.++. .+|- +.+++.+.++-.|
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeVt-----EeyF~tLp~nT~lmvL~~g 72 (77)
T cd06535 21 KNLKELLRKGCRLLQLPCAGSRLCLYEDGTEVT-----EEYFPTLPDNTELVLLTPG 72 (77)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEeh-----HHHHhcCCCCcEEEEEcCC
Confidence 468999999999999986544 4455777773 3443 4555666655443
No 314
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=23.63 E-value=2.9e+02 Score=19.94 Aligned_cols=59 Identities=8% Similarity=0.139 Sum_probs=40.8
Q ss_pred EEEEEcCCccHHHHHHHHHhhh-C--CCC---ccEEEEECC--EEeeccccccccccCCCCeEEEEe
Q 023198 75 FELKANRSDTIENIKFIIEVRE-G--IPV---HEYDIYYGG--KLIESYITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 75 ~~l~v~~~~tV~~lK~~I~~~~-g--ip~---~~q~L~~~g--~~L~D~~tL~~~~I~~~s~i~l~~ 133 (286)
.-+-|+..+|+.++-+++.... | +++ ..-++...| +.+..+.++++.||..-..+.+..
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 3456889999999999988764 4 333 246777888 889999999999999888777654
No 315
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=22.26 E-value=92 Score=28.60 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=51.2
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHH-hCCCCCceEEEecC---eEcC--CCCccccCCCCCCCE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFRE-IGQAPDSQRLVFKR---QQLE--DDRNLASYKIVNESI 278 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-~gi~~~~q~L~~~g---~~L~--d~~tL~~y~I~~~~~ 278 (286)
-.|.|++++|+-......++++|.-|-.-.... .|-+-....|+++- +.|. .+.|+.++||.+..+
T Consensus 278 t~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 278 TSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred eEEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 348899999988877778999999877666544 45666778888766 6664 567999999999876
No 316
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=22.17 E-value=1.6e+02 Score=20.95 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=23.1
Q ss_pred EeecCCC-eEEEecCCCccHHhHHHHHHHHhc
Q 023198 142 FVQTPTS-TVKLEVRRAHTVLDVKKMVESMRI 172 (286)
Q Consensus 142 ~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~ 172 (286)
.+...+| +|.++|+.+.-++.-|+-|++|+.
T Consensus 39 iitf~ngatfqvevpgsqhi~sqkk~iermkd 70 (102)
T PF01376_consen 39 IITFKNGATFQVEVPGSQHIDSQKKAIERMKD 70 (102)
T ss_dssp EEEETTS-EEEE--SSTTSTTTHHHHHHHHHH
T ss_pred EEEecCCcEEEEecCCccchhhhHHHHHHHHh
Confidence 3456678 999999999988888888888554
No 317
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=22.16 E-value=2.3e+02 Score=21.27 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=27.2
Q ss_pred EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCC
Q 023198 64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPV 100 (286)
Q Consensus 64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 100 (286)
++|-..+ |.+-.++|....+-.++|+++-.+.|.+.
T Consensus 3 i~~I~~d-G~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILED-GSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETT-TEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCC-CcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 4555666 99999999999999999999999999886
No 318
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.94 E-value=2.5e+02 Score=20.16 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=29.6
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEE
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDI 105 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L 105 (286)
..++++.|++..+=.++|+.|+..+|+++..-+-
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT 54 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNT 54 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 4689999999999999999999999999866543
No 319
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=21.36 E-value=2.2e+02 Score=20.66 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=33.1
Q ss_pred ceEEEeecCCcCcHHHHHHHHHHHhCCCCCceE-EEecCeE
Q 023198 222 GRYIILEVAKFDTVRDVKDKLFREIGQAPDSQR-LVFKRQQ 261 (286)
Q Consensus 222 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~-L~~~g~~ 261 (286)
..++++.|++..|=.++|+.++..+|+++..-+ +...|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 458889999999999999999999999997765 4455543
No 320
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=20.85 E-value=76 Score=28.85 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=37.5
Q ss_pred eecCCcCcHHHHHHHHHHHhC-C-CCCceEEEecCeEcCCCCcccc
Q 023198 227 LEVAKFDTVRDVKDKLFREIG-Q-APDSQRLVFKRQQLEDDRNLAS 270 (286)
Q Consensus 227 l~v~~~~tV~~lK~~I~~~~g-i-~~~~q~L~~~g~~L~d~~tL~~ 270 (286)
+.++...||.+||.-+..+.+ + +..+.-+++++..|.+..||.+
T Consensus 168 vrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~ 213 (331)
T KOG2660|consen 168 LRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKD 213 (331)
T ss_pred EeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhh
Confidence 678889999999999999999 4 4455668999999999999974
No 321
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=20.76 E-value=3.1e+02 Score=19.23 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=49.2
Q ss_pred EeecCCcCcHHHHHHHHHHHhCCCCCceEEE-ecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 226 ILEVAKFDTVRDVKDKLFREIGQAPDSQRLV-FKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 226 ~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
.+.|..+.....+-+-.++.+++|+..--++ -.|.-+....|-..+-++-|+.+.+..|+
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRD 79 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRD 79 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccc
Confidence 4578888888888888899999998776654 57777888888888889999999998875
No 322
>PRK08453 fliD flagellar capping protein; Validated
Probab=20.18 E-value=2.8e+02 Score=28.07 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhh
Q 023198 72 EKTFELKANRSDTIENIKFIIEVR 95 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~ 95 (286)
|++++++|....|+.+|+..|-..
T Consensus 137 G~~~sIdi~~gtTL~~L~~~INd~ 160 (673)
T PRK08453 137 GKDYAIDIKAGMTLGDVAQSITDA 160 (673)
T ss_pred CEEEEEEeCCCCcHHHHHHHhcCC
Confidence 899999999999999999999953
Done!