Query 023198
Match_columns 286
No_of_seqs 269 out of 2318
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 18:00:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 7.4E-36 2.5E-40 243.3 18.9 149 61-211 2-154 (159)
2 3u30_A Ubiquitin, linear DI-ub 100.0 1.8E-35 6.1E-40 244.1 18.9 151 59-211 18-169 (172)
3 3rt3_B Ubiquitin-like protein 100.0 1.3E-34 4.4E-39 235.9 18.2 146 138-284 2-153 (159)
4 3u30_A Ubiquitin, linear DI-ub 100.0 5.9E-34 2E-38 235.0 17.8 148 136-284 18-168 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 3E-33 1E-37 225.8 19.5 148 62-211 1-149 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 3.8E-32 1.3E-36 219.3 18.7 145 139-284 1-148 (152)
7 2kdi_A Ubiquitin, vacuolar pro 99.8 4E-22 1.4E-26 152.8 4.7 103 59-162 7-113 (114)
8 3plu_A Ubiquitin-like modifier 99.8 2.3E-20 7.7E-25 135.6 10.4 74 58-132 18-91 (93)
9 3plu_A Ubiquitin-like modifier 99.8 1.7E-20 5.7E-25 136.3 8.9 72 211-282 20-91 (93)
10 3phx_B Ubiquitin-like protein 99.8 5.8E-20 2E-24 131.5 11.0 78 59-137 2-79 (79)
11 4fbj_B NEDD8; effector-HOST ta 99.8 1.5E-19 5.3E-24 132.1 9.6 78 62-140 1-78 (88)
12 4eew_A Large proline-rich prot 99.8 3E-19 1E-23 130.5 10.3 84 49-134 2-88 (88)
13 4eew_A Large proline-rich prot 99.8 2.8E-19 9.4E-24 130.7 9.1 84 200-284 3-88 (88)
14 1yx5_B Ubiquitin; proteasome, 99.8 5.4E-19 1.8E-23 131.8 10.4 90 62-152 1-91 (98)
15 3phx_B Ubiquitin-like protein 99.8 4.9E-19 1.7E-23 126.7 9.6 73 212-284 4-76 (79)
16 2kk8_A Uncharacterized protein 99.8 5.7E-19 1.9E-23 127.8 9.7 76 59-135 8-84 (84)
17 2faz_A Ubiquitin-like containi 99.8 1.1E-18 3.9E-23 124.4 10.3 76 60-136 1-78 (78)
18 2uyz_B Small ubiquitin-related 99.8 6.8E-19 2.3E-23 125.9 8.9 77 61-138 3-79 (79)
19 3dbh_I NEDD8; cell cycle, acti 99.8 9.4E-19 3.2E-23 127.7 9.4 79 59-138 10-88 (88)
20 1uh6_A Ubiquitin-like 5; beta- 99.8 5.5E-19 1.9E-23 130.8 8.2 73 60-133 27-99 (100)
21 1ndd_A NEDD8, protein (ubiquit 99.8 1.5E-18 5.2E-23 122.8 10.1 76 62-138 1-76 (76)
22 2kk8_A Uncharacterized protein 99.8 6.5E-19 2.2E-23 127.5 8.3 73 213-285 11-84 (84)
23 1uh6_A Ubiquitin-like 5; beta- 99.8 4.1E-19 1.4E-23 131.5 7.3 70 213-282 29-98 (100)
24 1wyw_B Ubiquitin-like protein 99.8 1.1E-18 3.8E-23 129.8 9.5 79 59-138 19-97 (97)
25 4dwf_A HLA-B-associated transc 99.8 2.1E-18 7.2E-23 126.5 10.6 78 59-138 3-80 (90)
26 2lxa_A Ubiquitin-like protein 99.8 5E-19 1.7E-23 128.6 7.0 74 62-136 2-79 (87)
27 1sif_A Ubiquitin; hydrophobic 99.8 1.4E-18 4.9E-23 126.9 9.5 78 60-138 8-85 (88)
28 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 2.1E-18 7.1E-23 125.7 10.2 79 59-138 5-83 (87)
29 4fbj_B NEDD8; effector-HOST ta 99.8 1.9E-18 6.6E-23 126.2 9.4 72 213-284 1-72 (88)
30 2hj8_A Interferon-induced 17 k 99.8 1.1E-18 3.7E-23 127.6 8.0 78 60-138 3-80 (88)
31 3v6c_B Ubiquitin; structural g 99.8 3E-18 1E-22 126.0 10.4 77 59-136 15-91 (91)
32 2kan_A Uncharacterized protein 99.8 2.3E-18 7.9E-23 127.3 9.8 79 58-138 12-91 (94)
33 4hcn_B Polyubiquitin, ubiquiti 99.8 2.3E-18 7.9E-23 128.4 9.4 79 59-138 20-98 (98)
34 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 3.6E-18 1.2E-22 126.7 10.4 81 61-142 1-81 (96)
35 3a9j_A Ubiquitin; protein comp 99.8 4.5E-18 1.5E-22 120.4 10.4 76 62-138 1-76 (76)
36 3n3k_B Ubiquitin; hydrolase, p 99.8 2.3E-18 8E-23 124.7 8.8 78 60-138 2-79 (85)
37 3mtn_B UBA80, ubcep1, ubiquiti 99.8 5.2E-18 1.8E-22 122.8 10.3 78 60-138 2-79 (85)
38 1wy8_A NP95-like ring finger p 99.8 6.1E-18 2.1E-22 123.7 10.6 79 60-139 6-86 (89)
39 2lxa_A Ubiquitin-like protein 99.8 1.1E-18 3.8E-23 126.8 6.5 73 213-285 2-78 (87)
40 3l0w_B Monoubiquitinated proli 99.7 3.8E-18 1.3E-22 139.5 10.2 98 62-160 1-102 (169)
41 3v6c_B Ubiquitin; structural g 99.7 5.7E-18 1.9E-22 124.5 9.5 72 213-284 18-89 (91)
42 2faz_A Ubiquitin-like containi 99.7 6.1E-18 2.1E-22 120.6 9.3 73 213-285 3-77 (78)
43 4ajy_B Transcription elongatio 99.7 4.3E-18 1.5E-22 129.0 8.9 75 62-137 1-83 (118)
44 2fnj_B Transcription elongatio 99.7 3.3E-18 1.1E-22 130.2 8.2 75 62-138 1-83 (118)
45 3q3f_A Ribonuclease/ubiquitin 99.7 3.3E-18 1.1E-22 141.5 8.6 84 60-144 104-187 (189)
46 4a20_A Ubiquitin-like protein 99.7 8.9E-18 3.1E-22 124.6 10.0 76 59-135 17-96 (98)
47 2wyq_A HHR23A, UV excision rep 99.7 1.4E-17 5E-22 120.6 10.9 77 59-136 3-82 (85)
48 2ojr_A Ubiquitin; lanthide-bin 99.7 1.6E-17 5.6E-22 126.5 11.5 78 60-138 34-111 (111)
49 3vdz_A Ubiquitin-40S ribosomal 99.7 1.3E-17 4.3E-22 127.2 10.7 78 60-138 34-111 (111)
50 4dwf_A HLA-B-associated transc 99.7 7.4E-18 2.5E-22 123.6 9.1 73 212-285 5-77 (90)
51 3m63_B Ubiquitin domain-contai 99.7 2.6E-18 8.7E-23 128.7 6.4 91 192-285 8-100 (101)
52 1ndd_A NEDD8, protein (ubiquit 99.7 1.2E-17 4.2E-22 118.1 9.4 72 213-284 1-72 (76)
53 1se9_A Ubiquitin family; ubiqu 99.7 1.4E-17 4.7E-22 128.2 10.3 80 58-138 13-106 (126)
54 2l7r_A Ubiquitin-like protein 99.7 7.8E-18 2.7E-22 124.3 8.3 78 58-138 16-93 (93)
55 3dbh_I NEDD8; cell cycle, acti 99.7 9.8E-18 3.3E-22 122.3 8.5 72 213-284 13-84 (88)
56 2dzi_A Ubiquitin-like protein 99.7 2E-17 6.9E-22 118.6 10.0 77 59-136 5-81 (81)
57 2uyz_B Small ubiquitin-related 99.7 7.2E-18 2.4E-22 120.6 7.5 72 213-284 4-75 (79)
58 3n3k_B Ubiquitin; hydrolase, p 99.7 1.8E-17 6.1E-22 120.0 9.5 72 213-284 4-75 (85)
59 3m62_B UV excision repair prot 99.7 9.9E-18 3.4E-22 126.7 8.4 72 213-284 2-73 (106)
60 2hj8_A Interferon-induced 17 k 99.7 7.6E-18 2.6E-22 123.0 7.2 73 212-284 4-76 (88)
61 1sif_A Ubiquitin; hydrophobic 99.7 1.9E-17 6.5E-22 120.9 9.3 73 212-284 9-81 (88)
62 2bwf_A Ubiquitin-like protein 99.7 3.5E-17 1.2E-21 116.2 10.4 72 213-285 5-76 (77)
63 4hcn_B Polyubiquitin, ubiquiti 99.7 2E-17 6.8E-22 123.3 9.1 72 213-284 23-94 (98)
64 1uel_A HHR23B, UV excision rep 99.7 4.1E-17 1.4E-21 120.9 10.5 74 62-136 1-77 (95)
65 2wyq_A HHR23A, UV excision rep 99.7 3.6E-17 1.2E-21 118.5 9.8 73 212-284 5-80 (85)
66 1wju_A NEDD8 ultimate buster-1 99.7 1.5E-17 5.3E-22 123.0 7.9 70 214-283 17-90 (100)
67 1wgd_A Homocysteine-responsive 99.7 1.5E-17 5.2E-22 122.7 7.8 78 60-138 6-89 (93)
68 3a9j_A Ubiquitin; protein comp 99.7 3.7E-17 1.3E-21 115.6 9.5 72 213-284 1-72 (76)
69 4ajy_B Transcription elongatio 99.7 2.2E-17 7.7E-22 125.1 8.7 72 213-284 1-80 (118)
70 3m62_B UV excision repair prot 99.7 1.7E-17 5.7E-22 125.4 8.0 75 62-137 2-76 (106)
71 1wgh_A Ubiquitin-like 3, HCG-1 99.7 4.7E-17 1.6E-21 124.1 10.5 79 58-137 13-101 (116)
72 2kdi_A Ubiquitin, vacuolar pro 99.7 1.3E-18 4.3E-23 133.3 1.8 101 136-237 7-113 (114)
73 3b1l_X E3 ubiquitin-protein li 99.5 6.2E-19 2.1E-23 125.1 0.0 75 62-137 1-75 (76)
74 1wyw_B Ubiquitin-like protein 99.7 1.7E-17 5.8E-22 123.4 7.8 72 213-284 22-93 (97)
75 3mtn_B UBA80, ubcep1, ubiquiti 99.7 3.7E-17 1.3E-21 118.2 9.5 72 213-284 4-75 (85)
76 2fnj_B Transcription elongatio 99.7 1.6E-17 5.5E-22 126.4 7.8 72 213-284 1-80 (118)
77 1uel_A HHR23B, UV excision rep 99.7 4.5E-17 1.5E-21 120.6 10.1 72 213-284 1-75 (95)
78 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 3.5E-17 1.2E-21 119.1 9.3 72 213-284 8-79 (87)
79 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 4E-17 1.4E-21 121.1 9.5 72 213-284 2-73 (96)
80 2kan_A Uncharacterized protein 99.7 3.2E-17 1.1E-21 121.1 8.7 71 213-284 16-87 (94)
81 2bwf_A Ubiquitin-like protein 99.7 9.1E-17 3.1E-21 114.0 10.8 73 61-135 4-76 (77)
82 2dzi_A Ubiquitin-like protein 99.7 4.4E-17 1.5E-21 116.8 9.0 73 213-285 8-80 (81)
83 4a20_A Ubiquitin-like protein 99.7 2.8E-17 9.7E-22 122.0 8.1 73 212-284 19-95 (98)
84 1we6_A Splicing factor, putati 99.7 2.2E-17 7.7E-22 125.8 7.7 80 58-138 24-107 (111)
85 3m63_B Ubiquitin domain-contai 99.7 5.7E-18 1.9E-22 126.8 4.1 89 42-134 8-99 (101)
86 1yqb_A Ubiquilin 3; structural 99.7 6.4E-17 2.2E-21 120.9 9.8 78 59-138 20-97 (100)
87 1v2y_A 3300001G02RIK protein; 99.7 1.3E-17 4.6E-22 124.9 5.6 77 61-138 7-99 (105)
88 1wy8_A NP95-like ring finger p 99.7 6.8E-17 2.3E-21 118.1 9.1 72 213-284 8-81 (89)
89 1ttn_A DC-UBP, dendritic cell- 99.7 6.8E-17 2.3E-21 122.1 9.0 72 213-284 24-95 (106)
90 3vdz_A Ubiquitin-40S ribosomal 99.7 9E-17 3.1E-21 122.4 9.6 72 213-284 36-107 (111)
91 1ttn_A DC-UBP, dendritic cell- 99.7 9E-17 3.1E-21 121.4 9.6 77 60-137 22-98 (106)
92 1wju_A NEDD8 ultimate buster-1 99.7 6.1E-17 2.1E-21 119.8 8.4 75 63-138 17-94 (100)
93 4dbg_A Ranbp-type and C3HC4-ty 99.7 1.4E-16 4.7E-21 118.9 10.2 73 213-285 25-100 (105)
94 2gow_A HCG-1 protein, ubiquiti 99.7 7.7E-17 2.6E-21 124.6 8.9 79 59-138 15-103 (125)
95 2ojr_A Ubiquitin; lanthide-bin 99.7 8.1E-17 2.8E-21 122.7 8.8 72 213-284 36-107 (111)
96 1yx5_B Ubiquitin; proteasome, 99.7 1.4E-16 4.9E-21 118.6 9.5 72 213-284 1-72 (98)
97 1wgh_A Ubiquitin-like 3, HCG-1 99.7 1.3E-16 4.4E-21 121.6 9.2 73 213-285 17-99 (116)
98 2l7r_A Ubiquitin-like protein 99.7 9.8E-17 3.3E-21 118.3 8.1 70 213-284 20-89 (93)
99 1v2y_A 3300001G02RIK protein; 99.7 3.1E-17 1E-21 122.9 5.2 72 213-284 8-95 (105)
100 3b1l_X E3 ubiquitin-protein li 99.5 3.5E-18 1.2E-22 121.2 0.0 72 213-284 1-72 (76)
101 1wgd_A Homocysteine-responsive 99.7 1.1E-16 3.8E-21 118.0 7.9 72 213-284 8-85 (93)
102 4dbg_A Ranbp-type and C3HC4-ty 99.7 3.8E-16 1.3E-20 116.5 10.7 75 61-135 24-100 (105)
103 1v5o_A 1700011N24RIK protein; 99.7 1.7E-16 5.8E-21 119.0 8.6 79 60-138 6-88 (102)
104 3l0w_B Monoubiquitinated proli 99.7 2.3E-16 8E-21 128.8 10.1 72 213-284 1-72 (169)
105 1we7_A SF3A1 protein; structur 99.7 3.5E-16 1.2E-20 119.9 10.0 80 59-138 23-111 (115)
106 2klc_A Ubiquilin-1; ubiquitin- 99.7 7.1E-16 2.4E-20 115.4 11.0 77 59-137 23-99 (101)
107 1wx8_A Riken cDNA 4931431F19; 99.7 1.3E-16 4.4E-21 118.3 6.8 78 59-138 15-92 (96)
108 2kdb_A Homocysteine-responsive 99.7 1.3E-16 4.6E-21 118.6 6.8 73 59-132 21-99 (99)
109 3u5e_m 60S ribosomal protein L 99.7 7.6E-18 2.6E-22 131.7 0.0 76 62-138 1-76 (128)
110 2klc_A Ubiquilin-1; ubiquitin- 99.7 4.4E-16 1.5E-20 116.6 9.5 71 213-284 26-96 (101)
111 1yqb_A Ubiquilin 3; structural 99.7 2.8E-16 9.7E-21 117.4 8.4 71 213-284 23-93 (100)
112 2kd0_A LRR repeats and ubiquit 99.7 7.6E-16 2.6E-20 111.6 10.3 70 215-284 14-83 (85)
113 1wx7_A Ubiquilin 3; ubiquitin- 99.7 4.7E-16 1.6E-20 117.5 9.4 77 60-138 16-92 (106)
114 2kdb_A Homocysteine-responsive 99.6 1.5E-16 5.1E-21 118.3 6.5 70 213-282 24-99 (99)
115 1se9_A Ubiquitin family; ubiqu 99.6 3E-16 1E-20 120.8 8.2 73 213-285 17-103 (126)
116 3u5c_f 40S ribosomal protein S 99.6 1.1E-17 3.8E-22 133.9 0.0 76 62-138 1-76 (152)
117 1j8c_A Ubiquitin-like protein 99.6 7.8E-16 2.7E-20 119.5 10.2 77 60-138 31-107 (125)
118 1wx8_A Riken cDNA 4931431F19; 99.6 1.9E-16 6.4E-21 117.5 6.3 71 213-284 18-88 (96)
119 1we6_A Splicing factor, putati 99.6 4.7E-16 1.6E-20 118.5 8.2 72 213-284 28-103 (111)
120 3q3f_A Ribonuclease/ubiquitin 99.6 4.4E-16 1.5E-20 128.7 8.6 73 212-284 105-177 (189)
121 2gow_A HCG-1 protein, ubiquiti 99.6 3.5E-16 1.2E-20 120.9 7.0 73 213-285 18-100 (125)
122 1j8c_A Ubiquitin-like protein 99.6 1.1E-15 3.7E-20 118.7 9.8 71 213-284 33-103 (125)
123 1v5t_A 8430435I17RIK protein; 99.6 8E-16 2.7E-20 112.7 8.5 70 213-283 8-81 (90)
124 2dzm_A FAS-associated factor 1 99.6 4.7E-16 1.6E-20 115.6 6.7 72 213-285 9-82 (100)
125 1wgg_A Ubiquitin carboxyl-term 99.6 8.4E-16 2.9E-20 113.9 7.8 69 213-283 8-77 (96)
126 1v5o_A 1700011N24RIK protein; 99.6 7.5E-16 2.5E-20 115.5 7.5 72 213-284 8-84 (102)
127 1wx7_A Ubiquilin 3; ubiquitin- 99.6 1.3E-15 4.3E-20 115.1 8.6 71 213-284 18-88 (106)
128 2kd0_A LRR repeats and ubiquit 99.6 1.6E-15 5.4E-20 109.9 8.8 73 60-134 11-83 (85)
129 3u5e_m 60S ribosomal protein L 99.6 5.9E-17 2E-21 126.6 0.0 72 213-284 1-72 (128)
130 1v5t_A 8430435I17RIK protein; 99.6 1.2E-15 4.1E-20 111.8 7.0 75 60-136 6-84 (90)
131 2kjr_A CG11242; UBL, ubiquitin 99.6 2.7E-15 9.2E-20 110.7 8.7 71 213-283 16-94 (95)
132 1wgg_A Ubiquitin carboxyl-term 99.6 2E-15 7E-20 111.8 7.7 74 60-136 6-80 (96)
133 1we7_A SF3A1 protein; structur 99.6 3.3E-15 1.1E-19 114.5 9.0 64 221-284 44-107 (115)
134 2dzm_A FAS-associated factor 1 99.6 1.1E-15 3.9E-20 113.5 6.1 74 61-136 8-83 (100)
135 1wia_A Hypothetical ubiquitin- 99.6 3.8E-15 1.3E-19 110.2 8.8 74 60-137 6-80 (95)
136 1wia_A Hypothetical ubiquitin- 99.6 3.3E-15 1.1E-19 110.5 8.2 69 213-284 8-77 (95)
137 2dzj_A Synaptic glycoprotein S 99.6 1.3E-15 4.4E-20 111.0 5.8 71 213-283 11-87 (88)
138 3u5c_f 40S ribosomal protein S 99.6 1.1E-16 3.6E-21 128.2 0.0 72 213-284 1-72 (152)
139 1x1m_A Ubiquitin-like protein 99.6 3.2E-15 1.1E-19 113.1 8.1 73 213-285 13-100 (107)
140 2daf_A FLJ35834 protein; hypot 99.6 3.1E-15 1.1E-19 112.7 7.8 72 213-284 16-88 (118)
141 2xzm_9 RPS31E; ribosome, trans 99.6 1.5E-16 5.1E-21 130.8 0.0 72 62-139 1-72 (189)
142 4b6w_A Tubulin-specific chaper 99.6 2.7E-15 9.1E-20 108.7 6.5 66 219-284 11-83 (86)
143 1x1m_A Ubiquitin-like protein 99.6 4.2E-15 1.4E-19 112.4 7.8 77 59-136 10-101 (107)
144 2kjr_A CG11242; UBL, ubiquitin 99.6 1.2E-14 4.1E-19 107.2 9.5 73 59-132 13-93 (95)
145 1v86_A DNA segment, CHR 7, way 99.6 2.9E-15 1E-19 110.8 6.1 70 213-284 18-87 (95)
146 1wxv_A BAG-family molecular ch 99.6 8.9E-15 3.1E-19 107.5 8.8 71 213-284 8-84 (92)
147 2dzj_A Synaptic glycoprotein S 99.6 2.8E-15 9.5E-20 109.2 5.1 70 61-131 10-85 (88)
148 1wxv_A BAG-family molecular ch 99.6 1.5E-14 5E-19 106.3 9.0 75 60-136 6-86 (92)
149 2daf_A FLJ35834 protein; hypot 99.5 2E-14 6.7E-19 108.3 9.2 77 61-138 15-92 (118)
150 3ai5_A Yeast enhanced green fl 99.5 1.7E-14 5.7E-19 127.6 10.2 77 59-136 231-307 (307)
151 2kj6_A Tubulin folding cofacto 99.5 9.6E-15 3.3E-19 108.1 7.3 72 213-284 15-95 (97)
152 4b6w_A Tubulin-specific chaper 99.5 1.4E-14 4.8E-19 104.9 7.3 63 72-134 14-83 (86)
153 1v6e_A Cytoskeleton-associated 99.5 3.1E-14 1E-18 105.3 7.8 73 213-285 8-88 (95)
154 3ai5_A Yeast enhanced green fl 99.5 9.8E-14 3.4E-18 122.7 11.9 72 213-284 234-305 (307)
155 2kj6_A Tubulin folding cofacto 99.5 4.5E-14 1.5E-18 104.4 8.0 74 60-133 13-94 (97)
156 1v86_A DNA segment, CHR 7, way 99.5 1.2E-14 4.1E-19 107.5 4.5 73 60-135 16-88 (95)
157 1t0y_A Tubulin folding cofacto 99.5 1.3E-13 4.4E-18 106.6 9.0 73 213-285 7-87 (122)
158 2io1_B Small ubiquitin-related 99.5 2.3E-13 7.8E-18 100.1 9.8 78 60-138 6-83 (94)
159 1oqy_A HHR23A, UV excision rep 99.5 5.4E-14 1.9E-18 127.7 7.6 78 60-138 6-87 (368)
160 2xzm_9 RPS31E; ribosome, trans 99.5 4.1E-15 1.4E-19 122.2 0.0 67 213-284 1-67 (189)
161 1wf9_A NPL4 family protein; be 99.5 5.7E-14 1.9E-18 106.1 6.1 71 213-284 8-94 (107)
162 1oqy_A HHR23A, UV excision rep 99.4 1.4E-13 4.7E-18 125.0 7.5 72 213-284 8-83 (368)
163 1v6e_A Cytoskeleton-associated 99.4 4.1E-13 1.4E-17 99.2 7.2 72 61-133 7-86 (95)
164 2io1_B Small ubiquitin-related 99.4 8.3E-13 2.9E-17 97.1 8.8 72 213-284 8-79 (94)
165 2kzr_A Ubiquitin thioesterase 99.4 3.6E-13 1.2E-17 97.6 6.7 71 213-284 1-77 (86)
166 1t0y_A Tubulin folding cofacto 99.4 1E-12 3.4E-17 101.5 9.2 73 61-134 6-86 (122)
167 1wf9_A NPL4 family protein; be 99.4 1.8E-13 6.1E-18 103.3 4.6 73 61-135 7-95 (107)
168 2io0_B Small ubiquitin-related 99.4 2.5E-12 8.4E-17 93.9 9.9 78 60-138 4-81 (91)
169 3shq_A UBLCP1; phosphatase, hy 99.4 8.6E-13 2.9E-17 118.1 7.5 70 213-283 6-78 (320)
170 1wm3_A Ubiquitin-like protein 99.4 3.7E-12 1.3E-16 89.0 9.1 70 213-282 2-71 (72)
171 2d07_B Ubiquitin-like protein 99.3 8.8E-12 3E-16 91.5 10.1 78 60-138 16-93 (93)
172 2io0_B Small ubiquitin-related 99.3 7.5E-12 2.6E-16 91.3 9.0 72 213-284 6-77 (91)
173 2kzr_A Ubiquitin thioesterase 99.3 1.6E-12 5.5E-17 94.1 4.8 71 62-134 1-77 (86)
174 1wm3_A Ubiquitin-like protein 99.3 1.4E-11 4.6E-16 86.1 8.9 70 62-132 2-71 (72)
175 3shq_A UBLCP1; phosphatase, hy 99.3 3.8E-12 1.3E-16 113.9 7.1 77 60-138 4-83 (320)
176 3a4r_A Nfatc2-interacting prot 99.3 1.6E-11 5.4E-16 87.3 8.7 70 213-282 8-78 (79)
177 2eke_C Ubiquitin-like protein 99.3 2.2E-11 7.5E-16 91.1 9.4 77 60-138 30-106 (106)
178 2d07_B Ubiquitin-like protein 99.3 2.3E-11 7.8E-16 89.2 9.0 72 213-284 18-89 (93)
179 1wz0_A Ubiquitin-like protein 99.2 1.2E-11 4.2E-16 92.4 6.9 78 60-138 23-100 (104)
180 2k8h_A Small ubiquitin protein 99.2 1.2E-11 4.2E-16 93.2 6.3 79 60-139 25-103 (110)
181 3a4r_A Nfatc2-interacting prot 99.2 5.5E-11 1.9E-15 84.5 9.4 72 60-132 6-78 (79)
182 1wz0_A Ubiquitin-like protein 99.2 2.8E-11 9.6E-16 90.4 7.7 72 213-284 25-96 (104)
183 2eke_C Ubiquitin-like protein 99.2 7.5E-11 2.6E-15 88.2 8.6 71 213-284 32-102 (106)
184 2k8h_A Small ubiquitin protein 99.2 3.7E-11 1.3E-15 90.5 6.0 72 213-284 27-98 (110)
185 1wjn_A Tubulin-folding protein 99.1 2.1E-10 7.1E-15 84.8 8.4 72 213-284 10-92 (97)
186 1wjn_A Tubulin-folding protein 99.0 1.5E-09 5E-14 80.2 8.9 74 61-134 9-92 (97)
187 3kyd_D Small ubiquitin-related 98.9 9.7E-09 3.3E-13 77.5 9.3 72 213-284 41-112 (115)
188 3pge_A SUMO-modified prolifera 98.8 3.7E-08 1.3E-12 81.6 12.1 87 60-148 28-118 (200)
189 3kyd_D Small ubiquitin-related 98.8 3.3E-08 1.1E-12 74.6 10.3 75 60-135 39-113 (115)
190 3pge_A SUMO-modified prolifera 98.7 6.4E-08 2.2E-12 80.1 8.8 71 213-284 30-100 (200)
191 3tix_A Ubiquitin-like protein 98.6 1E-07 3.4E-12 77.5 7.8 77 61-139 57-133 (207)
192 3tix_A Ubiquitin-like protein 98.6 1.4E-07 4.6E-12 76.8 7.4 71 213-284 58-128 (207)
193 2pjh_A Protein NPL4, nuclear p 98.5 6.6E-08 2.2E-12 68.6 4.4 70 213-283 5-79 (80)
194 4efo_A Serine/threonine-protei 98.5 1E-06 3.5E-11 63.9 9.0 57 68-124 19-77 (94)
195 3goe_A DNA repair protein RAD6 98.4 2.8E-06 9.6E-11 58.6 9.7 71 213-283 10-81 (82)
196 4efo_A Serine/threonine-protei 98.4 1.2E-06 4E-11 63.5 7.9 66 219-284 20-88 (94)
197 3v7o_A Minor nucleoprotein VP3 98.3 5.7E-08 1.9E-12 80.1 0.1 78 60-139 20-97 (227)
198 3goe_A DNA repair protein RAD6 98.3 6.1E-06 2.1E-10 56.9 9.6 71 62-133 10-81 (82)
199 3v7o_A Minor nucleoprotein VP3 98.3 1.1E-07 3.7E-12 78.4 0.0 70 213-283 22-91 (227)
200 2ylm_A Ubiquitin carboxyl-term 98.2 0.0003 1E-08 67.0 22.3 261 3-266 153-501 (530)
201 2pjh_A Protein NPL4, nuclear p 98.2 1.8E-06 6.1E-11 61.1 4.9 70 138-208 4-78 (80)
202 3ivf_A Talin-1; FERM domain, c 98.2 8.1E-05 2.8E-09 67.7 17.1 134 148-283 12-166 (371)
203 2jxx_A Nfatc2-interacting prot 98.2 8.9E-06 3E-10 59.5 8.5 70 213-282 26-96 (97)
204 3uf8_A Ubiquitin-like protein 98.1 2.4E-05 8.2E-10 65.5 10.7 90 59-151 19-109 (209)
205 2al3_A TUG long isoform; TUG U 98.0 1.7E-05 5.8E-10 56.6 7.7 72 213-284 10-81 (90)
206 3ivf_A Talin-1; FERM domain, c 98.0 6.9E-05 2.3E-09 68.2 13.7 130 2-132 18-165 (371)
207 2kc2_A Talin-1, F1; FERM, adhe 98.0 8.5E-06 2.9E-10 62.4 5.6 71 214-284 13-122 (128)
208 2jxx_A Nfatc2-interacting prot 97.9 5.8E-05 2E-09 55.1 9.0 72 60-132 24-96 (97)
209 3uf8_A Ubiquitin-like protein 97.9 4E-05 1.4E-09 64.2 8.5 71 213-284 22-92 (209)
210 2l76_A Nfatc2-interacting prot 97.9 7.2E-05 2.5E-09 53.9 8.1 71 213-284 22-92 (95)
211 3ix6_A TS, tsase, thymidylate 97.8 2.2E-06 7.6E-11 76.9 0.0 81 60-142 20-100 (360)
212 2al3_A TUG long isoform; TUG U 97.8 9.6E-05 3.3E-09 52.7 7.8 73 137-210 8-81 (90)
213 3ix6_A TS, tsase, thymidylate 97.7 4.7E-06 1.6E-10 74.8 0.0 71 213-284 22-92 (360)
214 2bps_A YUKD protein; ubiquitin 97.6 0.00012 4.1E-09 51.5 5.8 68 214-281 6-80 (81)
215 2ylm_A Ubiquitin carboxyl-term 97.6 0.0019 6.6E-08 61.3 15.5 180 75-256 38-286 (530)
216 3qx1_A FAS-associated factor 1 97.6 0.0003 1E-08 49.9 7.6 70 213-283 8-82 (84)
217 2l76_A Nfatc2-interacting prot 97.5 0.00072 2.5E-08 48.6 9.0 72 61-134 21-92 (95)
218 2kc2_A Talin-1, F1; FERM, adhe 97.5 0.00018 6.2E-09 55.0 5.7 71 63-134 13-122 (128)
219 4da1_A Protein phosphatase 1K, 97.4 2E-05 7E-10 72.2 0.0 81 61-143 30-110 (389)
220 4da1_A Protein phosphatase 1K, 97.3 4.2E-05 1.4E-09 70.1 0.0 70 213-283 31-100 (389)
221 2dzk_A UBX domain-containing p 97.2 0.002 7E-08 48.0 8.4 72 213-284 14-90 (109)
222 2bps_A YUKD protein; ubiquitin 97.0 0.0026 8.7E-08 44.6 7.2 69 62-131 5-80 (81)
223 1wj4_A KIAA0794 protein; UBX d 97.0 0.0019 6.5E-08 49.3 7.1 71 213-284 44-119 (124)
224 3qx1_A FAS-associated factor 1 96.9 0.0049 1.7E-07 43.5 8.0 71 60-132 6-81 (84)
225 4e71_A Plexin-B2, MM1; transme 96.4 0.0092 3.2E-07 44.2 6.9 64 222-285 23-111 (111)
226 2daj_A KIAA0977 protein, COBL- 96.4 0.011 3.9E-07 41.2 6.5 67 215-284 13-82 (91)
227 2cr5_A Reproduction 8; UBX dom 96.3 0.012 4.1E-07 43.7 7.2 71 213-284 24-98 (109)
228 1wj4_A KIAA0794 protein; UBX d 96.1 0.023 7.8E-07 43.2 7.9 72 59-132 41-117 (124)
229 2dzk_A UBX domain-containing p 96.1 0.028 9.5E-07 41.7 8.0 74 60-134 12-90 (109)
230 4e71_A Plexin-B2, MM1; transme 95.9 0.029 9.9E-07 41.5 7.3 62 72-133 23-109 (111)
231 1s3s_G P47 protein; AAA ATPase 95.8 0.019 6.4E-07 43.9 6.2 68 213-280 53-124 (127)
232 3h6n_A Plexin-D1; structural g 95.7 0.076 2.6E-06 40.1 8.9 65 221-285 15-105 (127)
233 3h6n_A Plexin-D1; structural g 95.7 0.11 3.6E-06 39.3 9.6 64 72-135 16-105 (127)
234 2r2o_A Plexin-B1; effector dom 94.9 0.1 3.5E-06 40.0 7.6 64 73-136 41-130 (138)
235 2cr5_A Reproduction 8; UBX dom 94.8 0.092 3.2E-06 38.8 7.0 72 60-133 22-97 (109)
236 4e74_A Plexin-A4; RBD, structu 94.5 0.11 3.9E-06 38.7 6.8 63 72-134 26-114 (117)
237 2r2o_A Plexin-B1; effector dom 94.5 0.16 5.4E-06 38.9 7.7 63 223-285 41-129 (138)
238 4e74_A Plexin-A4; RBD, structu 94.5 0.16 5.5E-06 37.9 7.5 64 222-285 26-115 (117)
239 4a3p_A Ubiquitin carboxyl-term 94.3 0.18 6.2E-06 42.0 8.5 61 224-284 141-208 (217)
240 1s3s_G P47 protein; AAA ATPase 94.0 0.1 3.6E-06 39.6 5.8 68 60-128 51-122 (127)
241 2juo_A GA-binding protein alph 93.9 0.24 8.3E-06 34.4 6.8 57 226-282 6-62 (89)
242 3jyu_A Ubiquitin carboxyl-term 93.5 0.45 1.5E-05 40.0 9.6 61 224-284 153-220 (231)
243 3kuz_A Plexin-C1; structural g 93.0 0.78 2.7E-05 34.5 9.0 61 223-283 39-125 (126)
244 3kuz_A Plexin-C1; structural g 92.6 0.57 2E-05 35.2 7.8 60 73-132 39-124 (126)
245 2juo_A GA-binding protein alph 92.6 0.56 1.9E-05 32.5 7.0 55 153-208 8-62 (89)
246 4a3p_A Ubiquitin carboxyl-term 92.1 0.3 1E-05 40.6 6.4 65 74-138 141-212 (217)
247 3jyu_A Ubiquitin carboxyl-term 92.0 0.51 1.8E-05 39.6 7.9 65 74-138 153-224 (231)
248 2l32_A Small archaeal modifier 91.9 0.56 1.9E-05 31.9 6.6 59 139-208 1-60 (74)
249 2l32_A Small archaeal modifier 90.7 0.6 2.1E-05 31.8 5.8 60 213-282 1-60 (74)
250 2daj_A KIAA0977 protein, COBL- 90.3 0.97 3.3E-05 31.5 6.3 62 139-201 11-76 (91)
251 2kvr_A Ubiquitin carboxyl-term 89.8 0.29 1E-05 37.3 3.8 32 225-256 58-89 (130)
252 3ig3_A Plxna3 protein; plexin 89.1 2.7 9.2E-05 40.0 10.5 64 72-135 246-335 (627)
253 1oey_A P67-PHOX, neutrophil cy 88.3 0.95 3.2E-05 31.6 5.2 45 213-259 6-50 (83)
254 1ryj_A Unknown; beta/alpha pro 86.8 5.1 0.00017 26.5 9.0 61 213-283 5-65 (70)
255 3ig3_A Plxna3 protein; plexin 85.6 3.2 0.00011 39.5 8.8 62 223-284 247-334 (627)
256 3hm6_X Plexin-B1; structural g 85.4 4.8 0.00016 38.4 9.9 63 73-135 274-362 (644)
257 1vjk_A Molybdopterin convertin 85.2 8 0.00027 27.3 9.1 71 59-134 7-94 (98)
258 1ef1_A Moesin; membrane, FERM 84.6 4.2 0.00014 34.9 8.8 68 213-281 2-75 (294)
259 1h4r_A Merlin; FERM, neurofibr 84.6 4 0.00014 35.4 8.7 66 213-279 23-93 (314)
260 1ryj_A Unknown; beta/alpha pro 84.3 6.9 0.00024 25.9 9.8 64 61-135 4-67 (70)
261 3hm6_X Plexin-B1; structural g 84.3 3.5 0.00012 39.3 8.4 62 223-284 274-361 (644)
262 1vd2_A Protein kinase C, IOTA 83.7 3.5 0.00012 29.1 6.3 47 214-261 8-55 (89)
263 2kvr_A Ubiquitin carboxyl-term 83.6 0.97 3.3E-05 34.4 3.7 33 75-107 58-90 (130)
264 1oey_A P67-PHOX, neutrophil cy 80.8 3.6 0.00012 28.6 5.4 45 62-109 6-50 (83)
265 3qa8_A MGC80376 protein; kinas 77.9 2.4 8.4E-05 41.2 5.2 66 220-285 319-394 (676)
266 1vjk_A Molybdopterin convertin 77.6 16 0.00054 25.7 8.7 66 213-283 10-93 (98)
267 1tyg_B YJBS; alpha beta barrel 77.5 8 0.00027 27.0 6.5 63 137-209 19-82 (87)
268 2i1j_A Moesin; FERM, coiled-co 77.4 7.8 0.00027 36.9 8.5 68 213-281 5-78 (575)
269 1h4r_A Merlin; FERM, neurofibr 76.4 24 0.00081 30.4 10.8 74 59-134 20-98 (314)
270 3rpf_C Molybdopterin convertin 73.6 12 0.00042 24.8 6.5 52 152-209 16-69 (74)
271 3qij_A Protein 4.1; cytoskelet 73.5 11 0.00037 32.5 7.7 70 213-282 18-93 (296)
272 1ef1_A Moesin; membrane, FERM 73.4 26 0.00089 29.7 10.2 71 62-134 2-78 (294)
273 3rpf_C Molybdopterin convertin 73.1 16 0.00055 24.2 7.0 71 62-137 1-73 (74)
274 4eut_A Serine/threonine-protei 72.0 8.8 0.0003 34.1 7.1 52 221-272 320-373 (396)
275 1vd2_A Protein kinase C, IOTA 71.9 13 0.00046 26.0 6.4 46 64-109 7-53 (89)
276 1wgy_A RAP guanine nucleotide 70.9 20 0.00068 25.9 7.3 70 216-285 13-87 (104)
277 2kl0_A Putative thiamin biosyn 70.9 7.6 0.00026 26.0 4.9 52 151-209 9-60 (73)
278 3po0_A Small archaeal modifier 69.4 24 0.00082 24.1 8.8 56 223-283 18-84 (89)
279 1tyg_B YJBS; alpha beta barrel 68.6 13 0.00043 25.9 5.7 56 221-283 26-82 (87)
280 4eut_A Serine/threonine-protei 68.6 26 0.0009 30.9 9.5 59 64-122 313-373 (396)
281 1f0z_A THis protein; ubiquitin 68.2 15 0.00051 23.7 5.8 53 151-209 9-61 (66)
282 2k5p_A THis protein, thiamine- 67.3 7.6 0.00026 26.4 4.3 52 151-208 9-63 (78)
283 1y8x_B Ubiquitin-activating en 66.9 14 0.00048 26.4 5.8 62 223-284 5-84 (98)
284 3onh_A Ubiquitin-activating en 65.2 14 0.00047 27.7 5.6 52 231-283 18-78 (127)
285 2ddz_A 190AA long hypothetical 61.9 8.7 0.0003 30.7 4.2 84 28-113 11-121 (190)
286 1fm0_D Molybdopterin convertin 61.1 19 0.00067 24.0 5.5 54 224-283 18-76 (81)
287 1ip9_A BEM1 protein; ubiquitin 60.6 22 0.00075 24.6 5.5 29 221-249 20-48 (85)
288 2i1j_A Moesin; FERM, coiled-co 60.1 54 0.0018 31.0 10.2 73 60-134 3-81 (575)
289 2cu3_A Unknown function protei 60.0 23 0.0008 22.6 5.5 56 220-283 4-59 (64)
290 3qa8_A MGC80376 protein; kinas 55.2 8.8 0.0003 37.3 3.8 45 2-48 327-372 (676)
291 2q5w_D Molybdopterin convertin 54.8 27 0.00092 23.0 5.3 54 224-283 17-72 (77)
292 2kmc_A Fermitin family homolog 54.7 55 0.0019 23.3 8.5 72 213-284 20-99 (102)
293 2kl0_A Putative thiamin biosyn 52.6 21 0.00071 23.8 4.4 59 72-138 7-65 (73)
294 1wgr_A Growth factor receptor- 52.1 20 0.00069 25.6 4.4 71 213-283 10-91 (100)
295 2kmm_A Guanosine-3',5'-BIS(dip 50.6 25 0.00086 22.8 4.6 60 139-208 1-61 (73)
296 3dwg_C 9.5 kDa culture filtrat 49.2 61 0.0021 22.2 6.7 56 226-283 20-88 (93)
297 1q1o_A Cell division control p 48.8 24 0.00083 25.1 4.4 38 222-259 22-64 (98)
298 2c7h_A RBBP6, retinoblastoma-b 47.8 62 0.0021 22.4 6.2 66 214-283 8-79 (86)
299 2cu3_A Unknown function protei 47.5 52 0.0018 20.9 6.9 57 72-136 6-62 (64)
300 3po0_A Small archaeal modifier 46.0 66 0.0023 21.7 7.4 60 73-137 18-88 (89)
301 3qij_A Protein 4.1; cytoskelet 45.7 71 0.0024 27.2 7.9 60 138-198 17-83 (296)
302 3ge3_C Toluene-4-monooxygenase 45.1 72 0.0025 21.9 7.9 61 149-209 16-82 (84)
303 3au4_A Myosin-X; protein-prote 44.2 28 0.00096 32.6 5.4 45 213-257 217-263 (555)
304 1pqs_A Cell division control p 44.0 17 0.00059 24.7 2.8 36 224-259 3-43 (77)
305 3ge3_C Toluene-4-monooxygenase 43.9 76 0.0026 21.8 6.2 59 225-283 17-82 (84)
306 3dwg_C 9.5 kDa culture filtrat 42.8 78 0.0027 21.6 7.7 60 76-137 20-92 (93)
307 2inc_C TOUB protein; DIIRON, 4 40.9 85 0.0029 21.5 7.8 59 75-133 15-81 (83)
308 1fm0_D Molybdopterin convertin 40.9 66 0.0022 21.2 5.6 58 73-136 17-79 (81)
309 2j58_A WZA, outer membrane lip 39.3 2E+02 0.0068 25.3 12.8 173 81-284 117-325 (359)
310 1wgr_A Growth factor receptor- 39.0 79 0.0027 22.5 5.8 39 61-100 9-47 (100)
311 1c1y_B Proto-onkogene serine/t 37.6 93 0.0032 21.0 5.7 42 215-256 4-45 (77)
312 2q5w_D Molybdopterin convertin 37.0 72 0.0025 20.7 5.2 56 73-134 16-73 (77)
313 2inc_C TOUB protein; DIIRON, 4 36.9 1E+02 0.0034 21.2 9.2 61 149-209 14-81 (83)
314 1wgk_A Riken cDNA 2900073H19 p 36.8 1.2E+02 0.004 22.0 8.6 77 60-138 10-108 (114)
315 2g1e_A Hypothetical protein TA 36.0 97 0.0033 20.7 6.4 55 228-283 20-85 (90)
316 3pvl_A Myosin VIIA isoform 1; 35.7 42 0.0014 32.4 5.1 45 213-257 264-309 (655)
317 1c1y_B Proto-onkogene serine/t 34.3 1.1E+02 0.0037 20.7 5.6 41 141-182 4-45 (77)
318 1wxm_A A-RAF proto-oncogene se 34.0 1.2E+02 0.004 21.0 6.0 42 140-182 9-51 (86)
319 1wxm_A A-RAF proto-oncogene se 33.9 93 0.0032 21.5 5.2 43 214-256 9-51 (86)
320 1rws_A Hypothetical protein PF 33.5 64 0.0022 21.4 4.5 45 2-57 26-70 (77)
321 2dhz_A RAP guanine nucleotide 33.1 1.1E+02 0.0039 22.5 6.0 69 217-285 14-93 (120)
322 4gmv_A RAS-associated and plec 31.8 83 0.0028 26.8 5.9 69 214-282 33-112 (281)
323 2l05_A Serine/threonine-protei 31.6 1.3E+02 0.0046 21.1 6.1 44 213-256 18-61 (95)
324 2v1y_A Phosphatidylinositol-4, 31.4 96 0.0033 22.4 5.3 33 62-95 20-52 (108)
325 1hmj_A RPB5, protein (subunit 30.6 40 0.0014 22.9 2.9 43 238-285 19-61 (78)
326 2zjd_A Microtubule-associated 30.2 1.2E+02 0.0041 22.6 5.8 45 151-196 56-102 (130)
327 2r2q_A Gamma-aminobutyric acid 30.0 70 0.0024 23.1 4.4 45 151-196 47-92 (110)
328 1y8x_B Ubiquitin-activating en 29.9 67 0.0023 22.7 4.2 60 73-132 5-82 (98)
329 2eel_A Cell death activator CI 29.6 89 0.003 21.8 4.7 49 233-283 28-78 (91)
330 3r8s_T 50S ribosomal protein L 28.6 1.5E+02 0.005 20.7 5.7 40 72-111 27-67 (93)
331 3onh_A Ubiquitin-activating en 27.8 1.9E+02 0.0064 21.5 6.9 52 82-134 19-79 (127)
332 3rui_B Autophagy-related prote 27.6 1.5E+02 0.0051 21.7 5.9 45 151-196 50-95 (118)
333 3au4_A Myosin-X; protein-prote 27.6 1.7E+02 0.0057 27.3 7.8 48 59-107 214-263 (555)
334 3u52_E Phenol hydroxylase comp 27.0 1.9E+02 0.0064 21.2 7.7 63 223-285 38-110 (119)
335 1f2r_I Inhibitor of caspase-ac 26.8 1.5E+02 0.0051 21.1 5.5 51 233-285 37-91 (100)
336 2v1y_A Phosphatidylinositol-4, 26.6 88 0.003 22.6 4.4 70 213-283 20-103 (108)
337 2l05_A Serine/threonine-protei 26.3 1.6E+02 0.0055 20.7 5.5 42 140-182 19-61 (95)
338 1wgy_A RAP guanine nucleotide 25.5 1.9E+02 0.0064 20.7 8.1 61 149-210 21-86 (104)
339 3chb_D Cholera toxin; toxin/re 25.1 93 0.0032 21.2 3.9 32 141-172 39-71 (104)
340 3hk0_A Growth factor receptor- 25.0 1.7E+02 0.0059 24.4 6.6 58 63-121 10-74 (256)
341 2k9x_A Tburm1, uncharacterized 24.7 29 0.001 25.1 1.5 69 213-283 5-97 (110)
342 1q1o_A Cell division control p 24.7 1.3E+02 0.0043 21.4 4.8 40 60-99 4-49 (98)
343 2hj1_A Hypothetical protein; s 24.6 1.4E+02 0.0048 21.0 5.1 56 223-283 26-84 (97)
344 3h9d_A ATG8, microtubule-assoc 23.9 98 0.0034 22.7 4.3 45 151-196 51-96 (119)
345 2zjd_A Microtubule-associated 23.4 2.3E+02 0.0079 21.0 6.4 61 59-120 33-102 (130)
346 3h9d_A ATG8, microtubule-assoc 22.6 1.7E+02 0.0058 21.4 5.4 43 227-269 52-95 (119)
347 1wfy_A Regulator of G-protein 22.3 49 0.0017 23.8 2.2 58 213-270 17-77 (104)
348 1eik_A RNA polymerase subunit 22.2 35 0.0012 23.1 1.4 42 239-285 22-63 (77)
349 3tca_A Amyloid beta A4 precurs 22.1 1.6E+02 0.0056 24.3 6.1 41 213-253 35-75 (291)
350 2kmc_A Fermitin family homolog 21.9 2.2E+02 0.0074 20.2 7.9 71 62-132 20-97 (102)
351 3he4_B Synzip5; heterodimeric 21.6 39 0.0013 19.5 1.3 14 6-19 2-15 (46)
352 2qjl_A URM1, ubiquitin-related 21.2 2.1E+02 0.0071 19.7 8.7 73 62-137 2-98 (99)
353 3tve_T 50S ribosomal protein L 21.2 2E+02 0.0069 19.9 5.3 41 72-112 21-62 (92)
354 3m95_A Autophagy related prote 20.7 1.1E+02 0.0038 22.7 4.0 45 151-196 56-101 (125)
355 3hk0_A Growth factor receptor- 20.6 1.1E+02 0.0038 25.6 4.5 54 215-268 11-71 (256)
356 3ny5_A Serine/threonine-protei 20.6 2.3E+02 0.0078 19.9 5.7 43 214-256 15-57 (96)
357 1vq8_S 50S ribosomal protein L 20.4 1.3E+02 0.0043 20.7 4.0 33 72-104 22-54 (85)
358 1j0g_A Hypothetical protein 18 20.4 1.8E+02 0.0061 19.8 4.6 61 225-285 26-87 (92)
359 1ip9_A BEM1 protein; ubiquitin 20.1 2.2E+02 0.0075 19.5 6.1 37 61-99 12-48 (85)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=7.4e-36 Score=243.27 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=144.2
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE-E-CCEEeeccccccccccCCCCeEEEEee-ccc
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY-Y-GGKLIESYITLDVLNINNEDTLQMISV-PKE 137 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~-~g~~L~D~~tL~~~~I~~~s~i~l~~~-~~~ 137 (286)
.|+|+||+++ |+++++++++++||++||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++++++++ +++
T Consensus 2 ~m~i~vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~ 80 (159)
T 3rt3_B 2 GWDLTVKMLA-GNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE 80 (159)
T ss_dssp -CEEEEEETT-SCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC
T ss_pred ceEEEEEECC-CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC
Confidence 3899999999 99999999999999999999999999999999999 9 799999999999999999999999999 589
Q ss_pred ceeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeee
Q 023198 138 LQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHV 211 (286)
Q Consensus 138 ~~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 211 (286)
+|+|+|++.+| +++++|++++||.+||++|+. ++|+|+++|+|+|+|+.|+|+++|++|+|++|++|++.++.
T Consensus 81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~-~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSG-LEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 154 (159)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHH-HHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-HHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEec
Confidence 99999999999 999999999999999999999 99999999999999999999999999999999999998764
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=244.07 Aligned_cols=151 Identities=34% Similarity=0.514 Sum_probs=145.5
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
.+.|+|+|++.+ |++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus 18 ~~~m~i~Vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 18 GSHMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp -CCEEEEEEETT-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CCcEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence 468999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeee
Q 023198 139 QEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHV 211 (286)
Q Consensus 139 ~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 211 (286)
+.++|++.+| ++++++++++||.+||++|+. ++|+|+++|+|+|+|+.|+|+++|++|+|++|++|++.++.
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~-~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rl 169 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 169 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHH-HHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC--
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHH-HhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEec
Confidence 9999999999 999999999999999999999 99999999999999999999999999999999999998764
No 3
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=1.3e-34 Score=235.91 Aligned_cols=146 Identities=21% Similarity=0.219 Sum_probs=140.4
Q ss_pred ceeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEE-e-CCeeecCCccccccccCCCceEEEEeee-e-
Q 023198 138 LQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELF-R-GGEQLQNLKTLAYYDIKENEVLQIIRHV-K- 212 (286)
Q Consensus 138 ~~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~-~-~g~~L~d~~tL~~y~i~~~~~i~l~~~~-~- 212 (286)
+|+|+|++.+| +++++|++++||.+||++|+. ..|+|+++|+|+ | +|+.|+|+.+|++|+|++|+++++..+. .
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~-~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~ 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQ-KIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHH-HHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHH-HhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC
Confidence 37899999999 999999999999999999999 999999999999 9 7999999999999999999999999883 3
Q ss_pred -eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 -HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 -~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+++||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++||++.|
T Consensus 81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999865
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=5.9e-34 Score=234.97 Aligned_cols=148 Identities=38% Similarity=0.583 Sum_probs=141.8
Q ss_pred ccceeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeeee--
Q 023198 136 KELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVK-- 212 (286)
Q Consensus 136 ~~~~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~-- 212 (286)
...|+|+|++.+| ++.++|++++||.+||++|+. .+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|++.++..
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~-~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHH-HHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHH-HHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence 3469999999999 999999999999999999999 999999999999999999999999999999999999998755
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+.++|++.+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|.+|+|++|++|||+.|
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=3e-33 Score=225.77 Aligned_cols=148 Identities=34% Similarity=0.527 Sum_probs=144.4
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccceeE
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEI 141 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~I 141 (286)
|+|+|++.+ |+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+++++|.|
T Consensus 1 M~i~vk~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i 79 (152)
T 3b08_A 1 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQI 79 (152)
T ss_dssp CEEEEEETT-SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEE
T ss_pred CEEEEEeCC-CCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccce
Confidence 789999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeee
Q 023198 142 FVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHV 211 (286)
Q Consensus 142 ~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 211 (286)
+|++.+| ++.+++++++||.+||++|+. +.|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.++.
T Consensus 80 ~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~-~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 80 FVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 149 (152)
T ss_dssp EEEESSSCEEEEEECTTCBHHHHHHHHHH-HHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred eeeecCCCEEEEEeCCCCcHHHHHHHHHH-HhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 9999999 999999999999999999999 99999999999999999999999999999999999998764
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=3.8e-32 Score=219.29 Aligned_cols=145 Identities=39% Similarity=0.602 Sum_probs=140.5
Q ss_pred eeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeeee--eEE
Q 023198 139 QEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVK--HSI 215 (286)
Q Consensus 139 ~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~--~~i 215 (286)
|+|+|++.+| ++.+++++++||.+||++|+. ..|+|+++|+|+|+|+.|+|+.+|++|+|.+|+++++..+.. +.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~-~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i 79 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD-KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQI 79 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHH-HHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHH-HHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccce
Confidence 6899999999 999999999999999999999 999999999999999999999999999999999999998764 899
Q ss_pred EEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 216 FVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 216 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+|++++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.|
T Consensus 80 ~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 80 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp EEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred eeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999876
No 7
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.85 E-value=4e-22 Score=152.82 Aligned_cols=103 Identities=27% Similarity=0.357 Sum_probs=97.9
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
.+.++|+|++++ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||
T Consensus 7 ~~~~~i~vk~l~-G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 7 HGEFQIFAKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CCCCEEEEEETT-CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred CCcEEEEEEeCC-CcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 578999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEee---cCCC-eEEEecCCCccHHh
Q 023198 139 QEIFVQ---TPTS-TVKLEVRRAHTVLD 162 (286)
Q Consensus 139 ~~I~V~---~~~g-~~~l~v~~~~tV~~ 162 (286)
+.++++ +.+| +++++|++++||.+
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 86 SMGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ceeeccccccccCceEEEEeccccccCC
Confidence 999998 4568 99999999999864
No 8
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.83 E-value=2.3e-20 Score=135.61 Aligned_cols=74 Identities=15% Similarity=0.333 Sum_probs=70.5
Q ss_pred eCCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198 58 DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 58 ~~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
.++.|+|+||+++ |++++++++|+|||++||++|++++|+|+++|||+|+|++|+|+.||++|+|++|++++|.
T Consensus 18 ~~~mIqI~Vk~~~-Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRL-GKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTT-SCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCC-CCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 3568999999999 9999999999999999999999999999999999999999999999999999999999986
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.83 E-value=1.7e-20 Score=136.32 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=69.7
Q ss_pred eeeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 211 VKHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 211 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
+.|+|+||+++|+++.++++|++||++||++|++++|+|+++|||+|+|+.|+|+.||++|+|++|++|+|-
T Consensus 20 ~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 20 HMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred ceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 449999999999999999999999999999999999999999999999999999999999999999999984
No 10
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.82 E-value=5.8e-20 Score=131.53 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=74.6
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
.+.|+|+|++++ |+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++|
T Consensus 2 ~~~m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 2 DEPLSILVRNNK-GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp -CCEEEEEECTT-SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCCEEEEEEeCC-CCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 357999999999 999999999999999999999999999999999999999999999999999999999999999875
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.80 E-value=1.5e-19 Score=132.09 Aligned_cols=78 Identities=26% Similarity=0.343 Sum_probs=72.8
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccccee
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQE 140 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~ 140 (286)
|+|+|++++ |+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++||..
T Consensus 1 M~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 1 MLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGG 78 (88)
T ss_dssp CEEEEEETT-CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC----
T ss_pred CEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence 789999999 999999999999999999999999999999999999999999999999999999999999999999853
No 12
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=130.47 Aligned_cols=84 Identities=14% Similarity=0.274 Sum_probs=71.2
Q ss_pred CCCCceeee---eCCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCC
Q 023198 49 IPNNSVIHN---DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINN 125 (286)
Q Consensus 49 i~~~s~l~l---~~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~ 125 (286)
..+++++++ .++.|+|+||+++ |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +
T Consensus 2 ~~~~~~~~~~~~~~~~m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 2 MEPNDSTSTAVEEPDSLEVLVKTLD-SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp -------------CCEEEEEEEETT-SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCceEEeecCCCeEEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 456778887 4568999999999 9999999999999999999999999999999999999999999999999999 8
Q ss_pred CCeEEEEee
Q 023198 126 EDTLQMISV 134 (286)
Q Consensus 126 ~s~i~l~~~ 134 (286)
|+++++++|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999865
No 13
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=130.69 Aligned_cols=84 Identities=19% Similarity=0.381 Sum_probs=69.8
Q ss_pred CCCceEEEEeeee--eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCC
Q 023198 200 KENEVLQIIRHVK--HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNES 277 (286)
Q Consensus 200 ~~~~~i~l~~~~~--~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~ 277 (286)
.+++++++.++.. |+|+||+.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +|+
T Consensus 3 ~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~ 81 (88)
T 4eew_A 3 EPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGK 81 (88)
T ss_dssp ------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTE
T ss_pred CCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCc
Confidence 4566777765543 9999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred EEEEEcC
Q 023198 278 IVNLTDL 284 (286)
Q Consensus 278 ~l~l~~~ 284 (286)
+|||+.|
T Consensus 82 ~i~lv~R 88 (88)
T 4eew_A 82 VIHLVER 88 (88)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999976
No 14
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.79 E-value=5.4e-19 Score=131.83 Aligned_cols=90 Identities=32% Similarity=0.440 Sum_probs=74.6
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccceeE
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEI 141 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~I 141 (286)
|+|+|++++ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++.+++||.++
T Consensus 1 M~I~Vk~~~-g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i 79 (98)
T 1yx5_B 1 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDP 79 (98)
T ss_dssp CEEEEEETT-SCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence 789999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCC-eEEE
Q 023198 142 FVQTPTS-TVKL 152 (286)
Q Consensus 142 ~V~~~~g-~~~l 152 (286)
+.++.+| .-.+
T Consensus 80 ~~~~v~~~~~~~ 91 (98)
T 1yx5_B 80 NSSSVDKLAAAL 91 (98)
T ss_dssp ------------
T ss_pred ccccCCCchhhh
Confidence 9998877 4433
No 15
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=126.69 Aligned_cols=73 Identities=29% Similarity=0.254 Sum_probs=70.9
Q ss_pred eeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 212 KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 212 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
.|+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999876
No 16
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=5.7e-19 Score=127.84 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=72.8
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEE-eeccccccccccCCCCeEEEEeec
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKL-IESYITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~-L~D~~tL~~~~I~~~s~i~l~~~~ 135 (286)
.+-|+|+|++++ |+++++++++++||++||++|++++|+|+++|+|+|+|+. |+|+.+|++|+|.+|++++++++|
T Consensus 8 ~~~~~i~vk~l~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 8 HSHMKFLVENLN-GSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCCEEEEEEETT-SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred cCceEEEEEecC-CcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 457999999999 9999999999999999999999999999999999999999 999999999999999999998764
No 17
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=1.1e-18 Score=124.41 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=71.7
Q ss_pred CceEEEEEeCCCCcEE-EEE-EcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 60 GVMKLYFKTPSNEKTF-ELK-ANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~-~l~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
|+|+|+|++.+ |+++ +++ +++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++
T Consensus 1 g~m~i~Vk~~~-g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 1 GSMWIQVRTMD-GRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEEETT-SSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECC-CCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 57999999999 9985 999 9999999999999999999999999999999999999999999999999999998763
No 18
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.78 E-value=6.8e-19 Score=125.92 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=74.1
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
.|+|+|++.+ |+++.++|.+++||++||++|+++.|+|+++|+|+|+|++|+|+.||++|+|.++++|+++++++||
T Consensus 3 ~m~i~vk~~~-g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQD-SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTT-CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5899999999 9999999999999999999999999999999999999999999999999999999999999998875
No 19
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.77 E-value=9.4e-19 Score=127.70 Aligned_cols=79 Identities=27% Similarity=0.363 Sum_probs=75.8
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
.+.|+|+|++.+ |+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++||
T Consensus 10 ~~~m~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 357999999999 9999999999999999999999999999999999999999999999999999999999999998875
No 20
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=5.5e-19 Score=130.82 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=70.1
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~ 133 (286)
+.|+|+||+++ |++++++|++++||++||++|++++|+|+++|||+|+|++|+|+.+|++|+|.++++|+|+.
T Consensus 27 ~mm~I~VKtl~-Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 27 TMIEVVCNDRL-GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CEEEEEEECSS-SSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CeEEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 36999999999 99999999999999999999999999999999999999999999999999999999999863
No 21
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.77 E-value=1.5e-18 Score=122.84 Aligned_cols=76 Identities=26% Similarity=0.360 Sum_probs=72.3
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
|+|+|++++ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++||
T Consensus 1 M~i~vk~~~-g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTT-SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 789999999 9999999999999999999999999999999999999999999999999999999999999998875
No 22
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.77 E-value=6.5e-19 Score=127.53 Aligned_cols=73 Identities=29% Similarity=0.269 Sum_probs=71.2
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeE-cCCCCccccCCCCCCCEEEEEcCC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQ-LEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~-L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
|.|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+. |+|+.+|++|+|++|++|+++.++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999999874
No 23
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=4.1e-19 Score=131.53 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=68.8
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
|+|+||+++|+++.+++++++||++||++|++++|+|+++|||+|+|+.|+|+.||++|+|++|++|+|.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999986
No 24
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.77 E-value=1.1e-18 Score=129.83 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=76.0
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
+..|+|+|++++ |+++.++|.+++||++||++|+++.|+|+++|+|+|+|++|+|+.||++|+|.++++|+++++++||
T Consensus 19 ~~~m~I~Vk~~~-g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQD-SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTT-CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 457999999999 9999999999999999999999999999999999999999999999999999999999999998875
No 25
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.77 E-value=2.1e-18 Score=126.51 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=73.8
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
+..|+|+||+++ |+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +|++|+|+++++++
T Consensus 3 ~~~m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 3 PDSLEVLVKTLD-SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCEEEEEEEETT-CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CcEEEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 457999999999 9999999999999999999999999999999999999999999999999999 89999999998754
No 26
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=5e-19 Score=128.63 Aligned_cols=74 Identities=22% Similarity=0.357 Sum_probs=70.1
Q ss_pred eEEEEEeCCCCcEEEEEEc--CCccHHHHHHHH-HhhhCCCCccEEEEECCEEeecccccccccc-CCCCeEEEEeecc
Q 023198 62 MKLYFKTPSNEKTFELKAN--RSDTIENIKFII-EVREGIPVHEYDIYYGGKLIESYITLDVLNI-NNEDTLQMISVPK 136 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~--~~~tV~~lK~~I-~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I-~~~s~i~l~~~~~ 136 (286)
|+|+||+++ |++++++++ +++||+++|++| ++.+|+|+++|||+|+|+.|+|+.+|++|+| ++|+++++.+++.
T Consensus 2 mqI~VKtl~-g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQ-APKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECS-SSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCC-CCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 899999999 999999876 999999999999 9999999999999999999999999999999 7999999998764
No 27
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.4e-18 Score=126.92 Aligned_cols=78 Identities=36% Similarity=0.495 Sum_probs=70.3
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
-+|+|+|++++ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++||
T Consensus 8 ~~~~i~v~~~~-G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 8 QGLQLFIKTLT-GKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp --CEEEEEETT-SCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred cceEEEEEeCC-CCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 37999999999 9999999999999999999999999999999999999999999999999999999999999999886
No 28
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.1e-18 Score=125.65 Aligned_cols=79 Identities=20% Similarity=0.414 Sum_probs=76.5
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
++.|+|+|++.+ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++||
T Consensus 5 ~~~m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 5 SSGIQVFVKNPD-GGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp SSSEEEEEEETT-TEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCEEEEEEcCC-CCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 568999999999 9999999999999999999999999999999999999999999999999999999999999999887
No 29
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.76 E-value=1.9e-18 Score=126.23 Aligned_cols=72 Identities=31% Similarity=0.527 Sum_probs=69.8
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.|
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECB
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999999999999865
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=127.59 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=72.2
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
+.|+|+|++++ |+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++++++++|
T Consensus 3 ~~m~I~Vk~~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNK-GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETT-SCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred ccEEEEEECCC-CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 46999999999 9999999999999999999999999999999999999999999999999999999999999998876
No 31
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.76 E-value=3e-18 Score=126.01 Aligned_cols=77 Identities=34% Similarity=0.516 Sum_probs=73.9
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
...|+|+|++.+ |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.+|++++++++++
T Consensus 15 ~~~m~i~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLT-GTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCC-CCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 458999999999 99999999999999999999999999999999999999999999999999999999999998864
No 32
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=2.3e-18 Score=127.31 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=75.4
Q ss_pred eCCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecc-ccccccccCCCCeEEEEeecc
Q 023198 58 DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY-ITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 58 ~~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~-~tL~~~~I~~~s~i~l~~~~~ 136 (286)
..+.|+|+||+++ | ++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.++++|+|+++++
T Consensus 12 ~~~~~~I~Vk~~~-~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 12 AVRKIHVTVKFPS-K-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp SSCCEEEEEECSS-C-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred CCCCEEEEEEcCC-c-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 4568999999988 7 899999999999999999999999999999999999999999 999999999999999999998
Q ss_pred cc
Q 023198 137 EL 138 (286)
Q Consensus 137 ~~ 138 (286)
||
T Consensus 90 gg 91 (94)
T 2kan_A 90 NR 91 (94)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 33
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.3e-18 Score=128.37 Aligned_cols=79 Identities=34% Similarity=0.480 Sum_probs=75.1
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
...|+|+|++.+ |+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||
T Consensus 20 ~~~m~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETT-CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 347999999999 9999999999999999999999999999999999999999999999999999999999999999875
No 34
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.76 E-value=3.6e-18 Score=126.72 Aligned_cols=81 Identities=35% Similarity=0.494 Sum_probs=73.9
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccccee
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQE 140 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~ 140 (286)
+|+|+|++.+ |+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||..
T Consensus 1 gm~i~vk~~~-g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 1 GMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp -CEEEEEETT-CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred CcEEEEEeCC-CCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence 4899999999 999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred EE
Q 023198 141 IF 142 (286)
Q Consensus 141 I~ 142 (286)
..
T Consensus 80 ~~ 81 (96)
T 3k9o_B 80 LR 81 (96)
T ss_dssp --
T ss_pred cc
Confidence 43
No 35
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.76 E-value=4.5e-18 Score=120.38 Aligned_cols=76 Identities=37% Similarity=0.510 Sum_probs=73.7
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
|+|+|++.+ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++||
T Consensus 1 M~i~vk~~~-g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETT-SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCC-CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 789999999 9999999999999999999999999999999999999999999999999999999999999998875
No 36
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.3e-18 Score=124.71 Aligned_cols=78 Identities=33% Similarity=0.427 Sum_probs=72.8
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
..|+|+|++++ |+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++||
T Consensus 2 s~m~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 2 SHMRIVVKTLM-GRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp --CEEEEECGG-GCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred CeEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 36899999998 9999999999999999999999999999999999999999999999999999999999999999876
No 37
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=5.2e-18 Score=122.82 Aligned_cols=78 Identities=35% Similarity=0.442 Sum_probs=74.9
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
+.|+|+|++++ |+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++++++++|
T Consensus 2 s~m~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 46899999999 9999999999999999999999999999999999999999999999999999999999999999876
No 38
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=6.1e-18 Score=123.73 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=75.3
Q ss_pred CceEEEEEeCCCC-cEEEE-EEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 60 GVMKLYFKTPSNE-KTFEL-KANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 60 ~~~~i~Vk~~~~g-~~~~l-~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
+.|+|+|++.+ | +++.+ ++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++++
T Consensus 6 ~~m~i~Vk~~~-g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 6 SGMWIQVRTID-GSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp SCEEEEEEETT-CSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred CcEEEEEEECC-CCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 57999999999 8 79999 599999999999999999999999999999999999999999999999999999999988
Q ss_pred ce
Q 023198 138 LQ 139 (286)
Q Consensus 138 ~~ 139 (286)
|.
T Consensus 85 G~ 86 (89)
T 1wy8_A 85 GP 86 (89)
T ss_dssp SS
T ss_pred CC
Confidence 73
No 39
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.1e-18 Score=126.77 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=68.9
Q ss_pred eEEEEEeecceEEEeecC--CcCcHHHHHHHH-HHHhCCCCCceEEEecCeEcCCCCccccCCC-CCCCEEEEEcCC
Q 023198 213 HSIFVKLLNGRYIILEVA--KFDTVRDVKDKL-FREIGQAPDSQRLVFKRQQLEDDRNLASYKI-VNESIVNLTDLG 285 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~--~~~tV~~lK~~I-~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I-~~~~~l~l~~~~ 285 (286)
|+|+||+++|++++++++ +++||++||++| ++++|+|+++|||+|+|+.|+|+.||++|+| ++|++|++..++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 789999999999999866 999999999999 9999999999999999999999999999999 799999998764
No 40
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.75 E-value=3.8e-18 Score=139.51 Aligned_cols=98 Identities=28% Similarity=0.373 Sum_probs=83.0
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccceeE
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEI 141 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~I 141 (286)
|+|+||+++ |+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++||...
T Consensus 1 MqI~Vk~~~-Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 1 MQIFVKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGE 79 (169)
T ss_dssp CEEEEEETT-SCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---C
T ss_pred CEEEEEeCC-CCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccccc
Confidence 789999999 9999999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred EeecC----CCeEEEecCCCccH
Q 023198 142 FVQTP----TSTVKLEVRRAHTV 160 (286)
Q Consensus 142 ~V~~~----~g~~~l~v~~~~tV 160 (286)
.|+.. -|.-.+.++++.++
T Consensus 80 ~vkfs~~Gd~g~~~i~l~~~~~~ 102 (169)
T 3l0w_B 80 TIKFVADGDIGSGSVIIKPFVDM 102 (169)
T ss_dssp CEEEEEECSSCEEEEEECCBCCS
T ss_pred cccccccCcccceeEEEecCCCC
Confidence 55432 23444555554444
No 41
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.74 E-value=5.7e-18 Score=124.49 Aligned_cols=72 Identities=44% Similarity=0.631 Sum_probs=70.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|.+|||++|++|+++.|
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999876
No 42
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=6.1e-18 Score=120.58 Aligned_cols=73 Identities=22% Similarity=0.403 Sum_probs=70.0
Q ss_pred eEEEEEeecceEE-Eee-cCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 213 HSIFVKLLNGRYI-ILE-VAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 213 ~~i~vk~~~g~~~-~l~-v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
|+|+||+++|+++ .++ +++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7899999999985 999 999999999999999999999999999999999999999999999999999999873
No 43
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.74 E-value=4.3e-18 Score=129.00 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=69.0
Q ss_pred eEEEEEeCCCCc-EEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCC-------CCeEEEEe
Q 023198 62 MKLYFKTPSNEK-TFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINN-------EDTLQMIS 133 (286)
Q Consensus 62 ~~i~Vk~~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~-------~s~i~l~~ 133 (286)
|.+|++... ++ ++++++++++||++||++|++++|+|+++|||+|+|+.|+|++||++|||.+ +++++|++
T Consensus 1 m~vFl~Ikr-~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRR-HKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEE-BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred CceEEEEec-CCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 567777666 55 8999999999999999999999999999999999999999999999999999 99999999
Q ss_pred eccc
Q 023198 134 VPKE 137 (286)
Q Consensus 134 ~~~~ 137 (286)
+..+
T Consensus 80 r~~~ 83 (118)
T 4ajy_B 80 RADD 83 (118)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 9744
No 44
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.74 E-value=3.3e-18 Score=130.19 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=68.0
Q ss_pred eEEEEEeCCCCc-EEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccC-------CCCeEEEEe
Q 023198 62 MKLYFKTPSNEK-TFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNIN-------NEDTLQMIS 133 (286)
Q Consensus 62 ~~i~Vk~~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~-------~~s~i~l~~ 133 (286)
|+++|+... |+ +++++|++++||++||++|++++|+|+++|||+|+|++|+|++||++|||. ++++++|++
T Consensus 1 M~mfl~ir~-~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRR-HKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEE-BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred CcEEEEEec-CCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEe
Confidence 556666666 65 699999999999999999999999999999999999999999999999999 799999999
Q ss_pred ecccc
Q 023198 134 VPKEL 138 (286)
Q Consensus 134 ~~~~~ 138 (286)
+ .+|
T Consensus 80 r-~~g 83 (118)
T 2fnj_B 80 R-ADD 83 (118)
T ss_dssp B-SSS
T ss_pred c-CCC
Confidence 9 444
No 45
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.74 E-value=3.3e-18 Score=141.51 Aligned_cols=84 Identities=33% Similarity=0.438 Sum_probs=81.3
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ 139 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~ 139 (286)
-.|+|+|++++ |++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||.
T Consensus 104 ~eMqI~VKtl~-Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 104 YGGQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp CCEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred cceeeeeecCC-CCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 36999999999 99999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eEEee
Q 023198 140 EIFVQ 144 (286)
Q Consensus 140 ~I~V~ 144 (286)
.+||+
T Consensus 183 ~~fvk 187 (189)
T 3q3f_A 183 QTFTK 187 (189)
T ss_dssp CCCCC
T ss_pred cceEe
Confidence 88886
No 46
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.74 E-value=8.9e-18 Score=124.65 Aligned_cols=76 Identities=21% Similarity=0.335 Sum_probs=69.9
Q ss_pred CCceEEEEEeCCCCcEEEE--EEcCCccHHHHHHHH-HhhhCCCCccEEEEECCEEeecccccccccc-CCCCeEEEEee
Q 023198 59 SGVMKLYFKTPSNEKTFEL--KANRSDTIENIKFII-EVREGIPVHEYDIYYGGKLIESYITLDVLNI-NNEDTLQMISV 134 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l--~v~~~~tV~~lK~~I-~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I-~~~s~i~l~~~ 134 (286)
.+.|+|+||+++ |+++++ ++++++||++||++| ++..|+|+++|||+|+|+.|+|+.+|++|+| ++|++|+++++
T Consensus 17 ~~~m~I~VKtl~-g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 17 NAAVHLTLKKIQ-APKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp -CCEEEEEEECS-SSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCEEEEEEcCC-CCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 568999999999 998777 556999999999999 8889999999999999999999999999999 99999999876
Q ss_pred c
Q 023198 135 P 135 (286)
Q Consensus 135 ~ 135 (286)
.
T Consensus 96 k 96 (98)
T 4a20_A 96 P 96 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 47
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.74 E-value=1.4e-17 Score=120.57 Aligned_cols=77 Identities=18% Similarity=0.392 Sum_probs=71.6
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhh---hCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVR---EGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~---~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~ 135 (286)
+..|+|+|++.+ |+++.+++++++||++||++|++. +|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++.+.
T Consensus 3 ~~~m~i~vk~~~-g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQ-QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETT-SCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECC-CCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 568999999999 999999999999999999999998 8999999999999999999999999999999999998765
Q ss_pred c
Q 023198 136 K 136 (286)
Q Consensus 136 ~ 136 (286)
+
T Consensus 82 ~ 82 (85)
T 2wyq_A 82 T 82 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 48
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=126.54 Aligned_cols=78 Identities=36% Similarity=0.481 Sum_probs=74.8
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
..|+|+|++.+ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||
T Consensus 34 ~~m~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCC-CCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 47999999998 9999999999999999999999999999999999999999999999999999999999999999875
No 49
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.74 E-value=1.3e-17 Score=127.16 Aligned_cols=78 Identities=36% Similarity=0.481 Sum_probs=74.9
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
..|+|+|++++ |+++.+++.+++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||
T Consensus 34 ~~m~I~Vk~~~-G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCC-CCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 47999999999 9999999999999999999999999999999999999999999999999999999999999999875
No 50
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.74 E-value=7.4e-18 Score=123.56 Aligned_cols=73 Identities=21% Similarity=0.443 Sum_probs=70.1
Q ss_pred eeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 212 KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 212 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
.|+|+||+++|+++.+++++++||++||++|++++|+|+++|||+|+|+.|+|+.+|.+|+| +|++|||+.+.
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECC
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecC
Confidence 38999999999999999999999999999999999999999999999999999999999999 89999999873
No 51
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.6e-18 Score=128.73 Aligned_cols=91 Identities=24% Similarity=0.312 Sum_probs=68.3
Q ss_pred ccccccccCCCceEEEEeeee--eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccc
Q 023198 192 KTLAYYDIKENEVLQIIRHVK--HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLA 269 (286)
Q Consensus 192 ~tL~~y~i~~~~~i~l~~~~~--~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~ 269 (286)
..+++|.|. +|.++.++.. +.|.||+ +|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|+
T Consensus 8 ~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (101)
T 3m63_B 8 HPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE 84 (101)
T ss_dssp -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred CCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence 457788775 4555555444 6788886 8999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEEcCC
Q 023198 270 SYKIVNESIVNLTDLG 285 (286)
Q Consensus 270 ~y~I~~~~~l~l~~~~ 285 (286)
+|||++|++|+|+.+.
T Consensus 85 ~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 85 SYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp TTTCCTTEEEEECCCC
T ss_pred HCCCCCCCEEEEEeCC
Confidence 9999999999998763
No 52
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.73 E-value=1.2e-17 Score=118.08 Aligned_cols=72 Identities=31% Similarity=0.527 Sum_probs=69.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++..|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999999999999875
No 53
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.73 E-value=1.4e-17 Score=128.24 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=73.3
Q ss_pred eCCceEEEEEeCCCCcEE-EEEEcCCccHHHHHHHH-----HhhhCCCC--ccEEEEECCEEeeccccccccccCCC---
Q 023198 58 DSGVMKLYFKTPSNEKTF-ELKANRSDTIENIKFII-----EVREGIPV--HEYDIYYGGKLIESYITLDVLNINNE--- 126 (286)
Q Consensus 58 ~~~~~~i~Vk~~~~g~~~-~l~v~~~~tV~~lK~~I-----~~~~gip~--~~q~L~~~g~~L~D~~tL~~~~I~~~--- 126 (286)
....|+|+||+++ |+.+ ++++++++||++||++| ++++|+|+ ++|||+|+|+.|+|+.||++|+|+.+
T Consensus 13 ~~~~~~i~~kt~~-G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~ 91 (126)
T 1se9_A 13 VHNQLEIKFRLTD-GSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA 91 (126)
T ss_dssp SCCCEEEEEEETT-SCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCT
T ss_pred hcccEEEEEEECC-CCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCcc
Confidence 4568999999999 9988 79999999999999999 56778997 89999999999999999999999998
Q ss_pred ---CeEEEEeecccc
Q 023198 127 ---DTLQMISVPKEL 138 (286)
Q Consensus 127 ---s~i~l~~~~~~~ 138 (286)
++++|+++++++
T Consensus 92 ~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 92 GAVTTMHVIIQAPVT 106 (126)
T ss_dssp TCCEEEEEEECCCSS
T ss_pred CCcEEEEEEeccCCc
Confidence 689999998875
No 54
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.73 E-value=7.8e-18 Score=124.25 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=71.7
Q ss_pred eCCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 58 DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 58 ~~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
.+..|+|+|++ |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++|
T Consensus 16 ~~~~m~I~Vk~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 16 PRGSMQLFVRA---QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp ----CEEEEES---SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred CCCcEEEEEEC---CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 35679999997 689999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 023198 138 L 138 (286)
Q Consensus 138 ~ 138 (286)
|
T Consensus 93 G 93 (93)
T 2l7r_A 93 G 93 (93)
T ss_dssp C
T ss_pred C
Confidence 5
No 55
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.73 E-value=9.8e-18 Score=122.25 Aligned_cols=72 Identities=31% Similarity=0.522 Sum_probs=70.2
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999875
No 56
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=118.59 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=73.0
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
.+.|+|+|++.+ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++
T Consensus 5 ~~~m~i~vk~~~-g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 5 SSGMQLTVKALQ-GRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSEEEEEEETT-SCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCcEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 357999999998 99999999999999999999999999999999999999999999999999999999999998763
No 57
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.73 E-value=7.2e-18 Score=120.55 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=70.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+.+|+++.++|.+++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999875
No 58
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.8e-17 Score=120.01 Aligned_cols=72 Identities=47% Similarity=0.619 Sum_probs=70.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++|+++.|
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999876
No 59
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.9e-18 Score=126.68 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=69.4
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~ 73 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVS 73 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999876
No 60
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=7.6e-18 Score=123.04 Aligned_cols=73 Identities=29% Similarity=0.254 Sum_probs=70.4
Q ss_pred eeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 212 KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 212 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
.|+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.+
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 3889999999999999999999999999999999999999999999999999999999999999999999876
No 61
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.9e-17 Score=120.91 Aligned_cols=73 Identities=37% Similarity=0.594 Sum_probs=69.8
Q ss_pred eeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 212 KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 212 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
.|+|+|++++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.+
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999876
No 62
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.72 E-value=3.5e-17 Score=116.17 Aligned_cols=72 Identities=26% Similarity=0.339 Sum_probs=69.5
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
|.|+|+. +|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 7899998 99999999999999999999999999999999999999999999999999999999999999875
No 63
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2e-17 Score=123.26 Aligned_cols=72 Identities=46% Similarity=0.660 Sum_probs=70.4
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECB
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999876
No 64
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.1e-17 Score=120.86 Aligned_cols=74 Identities=22% Similarity=0.434 Sum_probs=70.9
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhh---hCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVR---EGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~---~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
|+|+|++++ |+.+.+++++++||++||++|++. +|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++.+
T Consensus 1 M~I~Vk~~~-g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQ-QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETT-CCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCC-CCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 789999999 999999999999999999999999 89999999999999999999999999999999999988754
No 65
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.71 E-value=3.6e-17 Score=118.48 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=70.1
Q ss_pred eeEEEEEeecceEEEeecCCcCcHHHHHHHHHHH---hCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 212 KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFRE---IGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 212 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~---~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
.|+|+||+.+|+++.+++++++||++||++|+++ +|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence 4899999999999999999999999999999998 899999999999999999999999999999999999875
No 66
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.5e-17 Score=123.03 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=63.5
Q ss_pred EEEEEeec----ceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 214 SIFVKLLN----GRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 214 ~i~vk~~~----g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
++.|+..+ ++++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 34455555 77999999999999999999999999999999999999999999999999999999996654
No 67
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.5e-17 Score=122.72 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=73.1
Q ss_pred CceEEEEEeCCCCc--EEEEEEcCCccHHHHHHHHHhhh--CCCCccEEEEECCEEeecccccccc--ccCCCCeEEEEe
Q 023198 60 GVMKLYFKTPSNEK--TFELKANRSDTIENIKFIIEVRE--GIPVHEYDIYYGGKLIESYITLDVL--NINNEDTLQMIS 133 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~--~~~l~v~~~~tV~~lK~~I~~~~--gip~~~q~L~~~g~~L~D~~tL~~~--~I~~~s~i~l~~ 133 (286)
+.|+|+||+.+ |+ ++.+++++++||++||++|++++ |+|+++|||+|+|+.|+|+.+|++| +|.++++++|++
T Consensus 6 ~~m~i~Vk~~~-~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 6 SGVTLLVKSPN-QRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CCCEEEEECSS-SSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred cEEEEEEEeCC-CCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 46899999998 88 67777889999999999999998 9999999999999999999999999 999999999999
Q ss_pred ecccc
Q 023198 134 VPKEL 138 (286)
Q Consensus 134 ~~~~~ 138 (286)
++++|
T Consensus 85 ~~~gg 89 (93)
T 1wgd_A 85 NVKSG 89 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98876
No 68
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.71 E-value=3.7e-17 Score=115.58 Aligned_cols=72 Identities=46% Similarity=0.654 Sum_probs=69.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++..+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 679999999999999999999999999999999999999999999999999999999999999999999876
No 69
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.71 E-value=2.2e-17 Score=125.07 Aligned_cols=72 Identities=22% Similarity=0.293 Sum_probs=66.3
Q ss_pred eEEEEEeecce-EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCC-------CCEEEEEcC
Q 023198 213 HSIFVKLLNGR-YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVN-------ESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~-------~~~l~l~~~ 284 (286)
|.++++...++ ++.+++.+++||.+||++|+.++|+|+++|||+|+|+.|+|++||++|||++ ++||||++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 45666666666 8889999999999999999999999999999999999999999999999999 999999986
No 70
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.7e-17 Score=125.43 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=70.3
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
|+|+||+++ |+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++.+.
T Consensus 2 m~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 2 VSLTFKNFK-KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp -CEEEECTT-CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred EEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 789999999 999999999999999999999999999999999999999999999999999999999999987643
No 71
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=4.7e-17 Score=124.09 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=71.3
Q ss_pred eCCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHh------hhCC--CCccEEEEECCEEeeccccccccccCCC--C
Q 023198 58 DSGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEV------REGI--PVHEYDIYYGGKLIESYITLDVLNINNE--D 127 (286)
Q Consensus 58 ~~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~------~~gi--p~~~q~L~~~g~~L~D~~tL~~~~I~~~--s 127 (286)
....|+|+||+++ |++++++|++++||++||++|++ ++|+ |+++|||+|+|+.|+|+.||++|+|..+ +
T Consensus 13 ~~~~m~I~vKtl~-G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~ 91 (116)
T 1wgh_A 13 PADMINLRLILVS-GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT 91 (116)
T ss_dssp CSSSEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEE
T ss_pred CCCeEEEEEEeCC-CCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCce
Confidence 4557999999999 99999999999999999999999 6675 6999999999999999999999999866 5
Q ss_pred eEEEEeeccc
Q 023198 128 TLQMISVPKE 137 (286)
Q Consensus 128 ~i~l~~~~~~ 137 (286)
++||++++..
T Consensus 92 tlhLvlr~~~ 101 (116)
T 1wgh_A 92 VMHLVARETL 101 (116)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEccCCC
Confidence 7888888764
No 72
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.3e-18 Score=133.27 Aligned_cols=101 Identities=25% Similarity=0.340 Sum_probs=92.5
Q ss_pred ccceeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEeeee--
Q 023198 136 KELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRHVK-- 212 (286)
Q Consensus 136 ~~~~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~-- 212 (286)
.|.++|+|++.+| ++.+++++++||.+||++|+. ..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++..+..
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQD-KEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHH-HHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHH-HHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 3668999999999 999999999999999999999 999999999999999999999999999999999999998865
Q ss_pred eEEEEE---eecceEEEeecCCcCcHHH
Q 023198 213 HSIFVK---LLNGRYIILEVAKFDTVRD 237 (286)
Q Consensus 213 ~~i~vk---~~~g~~~~l~v~~~~tV~~ 237 (286)
..++++ ..+|+++++++.+++||++
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 86 SMGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ceeeccccccccCceEEEEeccccccCC
Confidence 667777 5678999999999988864
No 73
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.55 E-value=6.2e-19 Score=125.11 Aligned_cols=75 Identities=15% Similarity=0.439 Sum_probs=72.6
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
|+|+|++++ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++++++|
T Consensus 1 M~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNS-SYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 789999999 999999999999999999999999999999999999999999999999999999999999999875
No 74
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.71 E-value=1.7e-17 Score=123.40 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=70.3
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.++|.+++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|+|++|++|+++.+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEES
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999875
No 75
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.7e-17 Score=118.23 Aligned_cols=72 Identities=44% Similarity=0.595 Sum_probs=70.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++.|
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 789999999999999999999999999999999999999999999999999999999999999999999876
No 76
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.71 E-value=1.6e-17 Score=126.40 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=66.4
Q ss_pred eEEEEEeecce-EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCC-------CCCEEEEEcC
Q 023198 213 HSIFVKLLNGR-YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIV-------NESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~-------~~~~l~l~~~ 284 (286)
|.++++...|+ ++.+++.+++||++||++|++++|||+++|||+|+|+.|+|++||++|||+ +++||+|++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 45666666775 699999999999999999999999999999999999999999999999999 7999999887
No 77
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.5e-17 Score=120.62 Aligned_cols=72 Identities=24% Similarity=0.344 Sum_probs=69.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHH---hCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFRE---IGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~---~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+.+|+++.+++++++||++||++|++. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEES
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEe
Confidence 689999999999999999999999999999999 899999999999999999999999999999999999864
No 78
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.5e-17 Score=119.10 Aligned_cols=72 Identities=22% Similarity=0.274 Sum_probs=70.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999876
No 79
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.71 E-value=4e-17 Score=121.06 Aligned_cols=72 Identities=46% Similarity=0.657 Sum_probs=69.9
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 789999999999999999999999999999999999999999999999999999999999999999999875
No 80
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=3.2e-17 Score=121.10 Aligned_cols=71 Identities=27% Similarity=0.297 Sum_probs=68.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCC-CccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD-RNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~-~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++| ++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+ .||++|+|++|++|+|+.+
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r 87 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLK 87 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEe
Confidence 8899999888 899999999999999999999999999999999999999999 9999999999999999876
No 81
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.70 E-value=9.1e-17 Score=114.02 Aligned_cols=73 Identities=19% Similarity=0.425 Sum_probs=69.4
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~ 135 (286)
.|+|+|++ + |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|+++++..++
T Consensus 4 ~m~i~vk~-~-g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 4 SLNIHIKS-G-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEE-T-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEEE-C-CEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 38899999 7 9999999999999999999999999999999999999999999999999999999999998654
No 82
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.4e-17 Score=116.84 Aligned_cols=73 Identities=30% Similarity=0.382 Sum_probs=70.2
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
|.|+|+.++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+-
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999998763
No 83
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.70 E-value=2.8e-17 Score=121.95 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=67.8
Q ss_pred eeEEEEEeecceEEEe--ecCCcCcHHHHHHHH-HHHhCCCCCceEEEecCeEcCCCCccccCCC-CCCCEEEEEcC
Q 023198 212 KHSIFVKLLNGRYIIL--EVAKFDTVRDVKDKL-FREIGQAPDSQRLVFKRQQLEDDRNLASYKI-VNESIVNLTDL 284 (286)
Q Consensus 212 ~~~i~vk~~~g~~~~l--~v~~~~tV~~lK~~I-~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I-~~~~~l~l~~~ 284 (286)
.|+|+||+++|+++++ ++++++||++||++| +++.|+|+++|||+|+|+.|+|+.+|++|+| ++|++|+++..
T Consensus 19 ~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 19 AVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp CEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 3899999999998777 566999999999999 8889999999999999999999999999999 99999999864
No 84
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.70 E-value=2.2e-17 Score=125.80 Aligned_cols=80 Identities=14% Similarity=0.226 Sum_probs=76.5
Q ss_pred eCCceEEEEEeC---CCCcEEEEEEcC-CccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198 58 DSGVMKLYFKTP---SNEKTFELKANR-SDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 58 ~~~~~~i~Vk~~---~~g~~~~l~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~ 133 (286)
.++.|+|+|+++ + |+++.+++++ ++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++++
T Consensus 24 ~~~~i~i~Vk~~~~~~-g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 24 HPGPATIRVSKPNEND-GQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp CCSCEEEEECCTTCSS-SCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred CCCcEEEEEEecccCC-CcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 367899999998 7 9999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred ecccc
Q 023198 134 VPKEL 138 (286)
Q Consensus 134 ~~~~~ 138 (286)
+++||
T Consensus 103 r~~GG 107 (111)
T 1we6_A 103 RERSG 107 (111)
T ss_dssp SSCCS
T ss_pred EcCCC
Confidence 99887
No 85
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.7e-18 Score=126.84 Aligned_cols=89 Identities=20% Similarity=0.403 Sum_probs=66.4
Q ss_pred CcccccCCCCCceeee-eCCc--eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccc
Q 023198 42 LTVIDYGIPNNSVIHN-DSGV--MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITL 118 (286)
Q Consensus 42 ~~l~~y~i~~~s~l~l-~~~~--~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL 118 (286)
...+||.| ++|.+| +.+. +.|+|++ + |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|
T Consensus 8 ~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 8 HPMSDYDI--PTTENLYFQGAMSLNIHIKS-G-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp -----------------------CCEEEEC-S-SCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred CCccccCC--CcceeecccCCcEEEEEEEE-C-CEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 46889999 555555 4554 5677776 6 99999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEee
Q 023198 119 DVLNINNEDTLQMISV 134 (286)
Q Consensus 119 ~~~~I~~~s~i~l~~~ 134 (286)
++|||++|++|+++.+
T Consensus 84 ~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 84 ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTTCCTTEEEEECCC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999998765
No 86
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=6.4e-17 Score=120.89 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=73.8
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
.+.|+|+|++.+ |+ +.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++++
T Consensus 20 ~~~m~I~Vk~~~-g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 20 PHLIKVTVKTPK-DK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp TTEEEEEEECSS-CE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CCeEEEEEEcCC-Cc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 567999999998 76 7999999999999999999999999999999999999999999999999999999999998765
No 87
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=1.3e-17 Score=124.87 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=72.0
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCc---------------cEEEEECCEEee-ccccccccccC
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVH---------------EYDIYYGGKLIE-SYITLDVLNIN 124 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~---------------~q~L~~~g~~L~-D~~tL~~~~I~ 124 (286)
.|+|+|++++ |++++++|.+++||++||++|++++|+|+. +|+|+|+|+.|. |+.||++|||.
T Consensus 7 ~M~I~Vk~l~-g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 7 GMTVRVCKMD-GEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp SEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred cEEEEEEecC-CCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 5999999999 999999999999999999999999999884 579999999996 67999999999
Q ss_pred CCCeEEEEeecccc
Q 023198 125 NEDTLQMISVPKEL 138 (286)
Q Consensus 125 ~~s~i~l~~~~~~~ 138 (286)
+|++|+++.++++.
T Consensus 86 ~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 86 NRDEVSFIKKLGQK 99 (105)
T ss_dssp SSEEEEEEECSCSC
T ss_pred CCCEEEEEehhccC
Confidence 99999999998864
No 88
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=6.8e-17 Score=118.11 Aligned_cols=72 Identities=22% Similarity=0.448 Sum_probs=69.3
Q ss_pred eEEEEEeecc-eEEEe-ecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNG-RYIIL-EVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g-~~~~l-~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++| +++.+ ++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++||++.+
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 8999999999 79999 599999999999999999999999999999999999999999999999999999876
No 89
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=6.8e-17 Score=122.08 Aligned_cols=72 Identities=28% Similarity=0.376 Sum_probs=70.3
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.+++.+++||++||.+|++++|+|+++|+|+|+|+.|+|+.+|.+|||++|++|||+.+
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999876
No 90
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.69 E-value=9e-17 Score=122.40 Aligned_cols=72 Identities=46% Similarity=0.657 Sum_probs=70.3
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999876
No 91
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=9e-17 Score=121.40 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=73.4
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
..|+|+|++++ |+++.+++.+++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++.+.
T Consensus 22 ~~m~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 22 YECQLRLRLST-GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp CSEEEEEEETT-TEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred CeEEEEEEcCC-CCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 46999999999 999999999999999999999999999999999999999999999999999999999999987653
No 92
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=6.1e-17 Score=119.83 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=66.1
Q ss_pred EEEEEeCC-C--CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 63 KLYFKTPS-N--EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 63 ~i~Vk~~~-~--g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
.+.|+... + +++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+.||++|+|+++++| +++++++.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 34555444 1 6799999999999999999999999999999999999999999999999999999999 67777653
No 93
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.69 E-value=1.4e-16 Score=118.87 Aligned_cols=73 Identities=26% Similarity=0.179 Sum_probs=68.9
Q ss_pred eEEEEEeecc--eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCC-CCCCEEEEEcCC
Q 023198 213 HSIFVKLLNG--RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKI-VNESIVNLTDLG 285 (286)
Q Consensus 213 ~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I-~~~~~l~l~~~~ 285 (286)
|.++|+...+ .++++++.+++||++||++|++++|+|+++|||+|+|+.++|++||.+||| ++|+++||...+
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 7899998874 789999999999999999999999999999999999999999999999999 699999999865
No 94
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-17 Score=124.58 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=71.7
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHh------hhCCC--CccEEEEECCEEeeccccccccccCCCC--e
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEV------REGIP--VHEYDIYYGGKLIESYITLDVLNINNED--T 128 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~------~~gip--~~~q~L~~~g~~L~D~~tL~~~~I~~~s--~ 128 (286)
...|.|+||+++ |+++++++++++||++||++|++ ++|+| +++|||+|+|+.|+|+.||++|+|..++ +
T Consensus 15 ~~~m~I~vktl~-G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 15 ADMINLRLILVS-GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 93 (125)
T ss_dssp TTCEEEEEECTT-SCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred CCeEEEEEEeCC-CCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 446999999999 99999999999999999999999 77885 8999999999999999999999999776 7
Q ss_pred EEEEeecccc
Q 023198 129 LQMISVPKEL 138 (286)
Q Consensus 129 i~l~~~~~~~ 138 (286)
++|+++++++
T Consensus 94 lhlv~r~~~~ 103 (125)
T 2gow_A 94 MHLVARETLP 103 (125)
T ss_dssp EEEEECSCCS
T ss_pred EEEEecCCCC
Confidence 8888887653
No 95
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.68 E-value=8.1e-17 Score=122.70 Aligned_cols=72 Identities=46% Similarity=0.657 Sum_probs=70.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999876
No 96
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.68 E-value=1.4e-16 Score=118.57 Aligned_cols=72 Identities=46% Similarity=0.657 Sum_probs=69.4
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++..+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999999999998765
No 97
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=1.3e-16 Score=121.63 Aligned_cols=73 Identities=18% Similarity=0.326 Sum_probs=67.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHH------HhCC--CCCceEEEecCeEcCCCCccccCCCCCC--CEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFR------EIGQ--APDSQRLVFKRQQLEDDRNLASYKIVNE--SIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~------~~gi--~~~~q~L~~~g~~L~d~~tL~~y~I~~~--~~l~l~ 282 (286)
|.|+||+++|+++++++++++||++||++|++ ++|+ |+++|||+|+|+.|+|+.||++|+|+.+ +++||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 88999999999999999999999999999999 6785 6999999999999999999999999766 689998
Q ss_pred cCC
Q 023198 283 DLG 285 (286)
Q Consensus 283 ~~~ 285 (286)
.|.
T Consensus 97 lr~ 99 (116)
T 1wgh_A 97 ARE 99 (116)
T ss_dssp ECS
T ss_pred ccC
Confidence 774
No 98
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=9.8e-17 Score=118.32 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=67.8
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+ |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 8899997 899999999999999999999999999999999999999999999999999999999999876
No 99
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=3.1e-17 Score=122.91 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=67.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCC---------------CceEEEecCeEcC-CCCccccCCCCCC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAP---------------DSQRLVFKRQQLE-DDRNLASYKIVNE 276 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~---------------~~q~L~~~g~~L~-d~~tL~~y~I~~~ 276 (286)
|.|+|++++|+++.++|++++||++||++|++++|+|+ ++|+|+|+|+.|. |+.||++|||++|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 89999999999999999999999999999999999988 4679999999996 6699999999999
Q ss_pred CEEEEEcC
Q 023198 277 SIVNLTDL 284 (286)
Q Consensus 277 ~~l~l~~~ 284 (286)
++||++.+
T Consensus 88 ~~l~lv~~ 95 (105)
T 1v2y_A 88 DEVSFIKK 95 (105)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEeh
Confidence 99999875
No 100
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.50 E-value=3.5e-18 Score=121.23 Aligned_cols=72 Identities=18% Similarity=0.331 Sum_probs=69.4
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 678999999999999999999999999999999999999999999999999999999999999999999865
No 101
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.1e-16 Score=118.03 Aligned_cols=72 Identities=25% Similarity=0.274 Sum_probs=68.3
Q ss_pred eEEEEEeecce--EEEeecCCcCcHHHHHHHHHHHh--CCCCCceEEEecCeEcCCCCccccC--CCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGR--YIILEVAKFDTVRDVKDKLFREI--GQAPDSQRLVFKRQQLEDDRNLASY--KIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~--gi~~~~q~L~~~g~~L~d~~tL~~y--~I~~~~~l~l~~~ 284 (286)
|+|+||+.+|+ ++.+++++++||++||++|++++ |+|+++|||+|+|+.|+|+.+|++| +|+++++|||+.+
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 88999999998 67888889999999999999999 9999999999999999999999999 9999999999875
No 102
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.67 E-value=3.8e-16 Score=116.50 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=69.3
Q ss_pred ceEEEEEeCC-CCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecccccccccc-CCCCeEEEEeec
Q 023198 61 VMKLYFKTPS-NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNI-NNEDTLQMISVP 135 (286)
Q Consensus 61 ~~~i~Vk~~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I-~~~s~i~l~~~~ 135 (286)
.|+|+|+... .+.+++++++|++||++||++|++++|+|+++|||+|+|+.++|++||++||| ++|++++|++..
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999886 13799999999999999999999999999999999999999999999999999 599999998753
No 103
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=1.7e-16 Score=119.05 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=72.7
Q ss_pred CceEEEEEeCCCC---cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecc-ccccccccCCCCeEEEEeec
Q 023198 60 GVMKLYFKTPSNE---KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY-ITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 60 ~~~~i~Vk~~~~g---~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~-~tL~~~~I~~~s~i~l~~~~ 135 (286)
..|+|+|++.+.+ +++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.++++|+++.+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 4699999997622 7999999999999999999999999999999999999999988 69999999999999999988
Q ss_pred ccc
Q 023198 136 KEL 138 (286)
Q Consensus 136 ~~~ 138 (286)
+++
T Consensus 86 ~gg 88 (102)
T 1v5o_A 86 NVG 88 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 775
No 104
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.67 E-value=2.3e-16 Score=128.85 Aligned_cols=72 Identities=46% Similarity=0.660 Sum_probs=70.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.+++++++||++||++|++++|+|+++|||+|+|+.|+|+.+|++|+|++|++||++.|
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999999999999875
No 105
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.66 E-value=3.5e-16 Score=119.92 Aligned_cols=80 Identities=18% Similarity=0.310 Sum_probs=74.5
Q ss_pred CCceEEEEEeCC---------CCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeE
Q 023198 59 SGVMKLYFKTPS---------NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTL 129 (286)
Q Consensus 59 ~~~~~i~Vk~~~---------~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i 129 (286)
++.+.|.|+.++ .|++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 567888888763 27899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccc
Q 023198 130 QMISVPKEL 138 (286)
Q Consensus 130 ~l~~~~~~~ 138 (286)
+|+++++||
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999999987
No 106
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=7.1e-16 Score=115.39 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=72.2
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
...|+|+|++. |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++.+++.
T Consensus 23 ~~~m~I~Vk~~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 23 PKIMKVTVKTP--KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCCEEEEEECS--SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCeEEEEEEeC--CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 35799999987 688999999999999999999999999999999999999999999999999999999999988754
No 107
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=1.3e-16 Score=118.34 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=73.7
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
...|+|+|++. |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++++
T Consensus 15 ~~~m~i~Vk~~--g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 15 SRIIRVSVKTP--QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp SCEEEEEEECS--SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CCcEEEEEEEC--CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 34799999987 7999999999999999999999999999999999999999999999999999999999999998775
No 108
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=118.56 Aligned_cols=73 Identities=15% Similarity=0.298 Sum_probs=65.6
Q ss_pred CCceEEEEEeCCCCc--EEEEEEcCCccHHHHHHHHHhh-hCCCC-ccEEEEECCEEeecccccccc--ccCCCCeEEEE
Q 023198 59 SGVMKLYFKTPSNEK--TFELKANRSDTIENIKFIIEVR-EGIPV-HEYDIYYGGKLIESYITLDVL--NINNEDTLQMI 132 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~--~~~l~v~~~~tV~~lK~~I~~~-~gip~-~~q~L~~~g~~L~D~~tL~~~--~I~~~s~i~l~ 132 (286)
.+.|+|+||+++ |+ ++++++++++||++||++|+++ .|+|+ ++|||+|+|+.|+|+.+|++| +|.++++|+|+
T Consensus 21 ~~~m~I~VK~~~-g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPN-QKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTT-SSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCC-CCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 457999999998 88 7899999999999999999986 56664 999999999999999999999 99999999874
No 109
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.65 E-value=7.6e-18 Score=131.65 Aligned_cols=76 Identities=36% Similarity=0.510 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
|+|+|++++ |+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++||
T Consensus 1 M~I~Vk~~~-G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCC-CCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 789999999 9999999999999999999999999999999999999999999999999999999999999999887
No 110
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=116.56 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=68.5
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|.|+||.. |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 88999988 889999999999999999999999999999999999999999999999999999999999876
No 111
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=2.8e-16 Score=117.35 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=68.2
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+.+|+ +.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++.+
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEc
Confidence 88999999886 689999999999999999999999999999999999999999999999999999999876
No 112
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=7.6e-16 Score=111.57 Aligned_cols=70 Identities=24% Similarity=0.284 Sum_probs=65.8
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
.+++.++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4456679999999999999999999999999999999999999999999999999999999999999864
No 113
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=4.7e-16 Score=117.45 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=72.8
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
..|+|+|++.. |+ +.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++++
T Consensus 16 ~~m~I~Vk~~~-g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 16 HLIKVTVKTPK-DK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SEEEEEEECSS-CE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred ceEEEEEEeCC-Cc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 46999999998 76 7999999999999999999999999999999999999999999999999999999999998765
No 114
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=118.34 Aligned_cols=70 Identities=23% Similarity=0.215 Sum_probs=65.0
Q ss_pred eEEEEEeecce--EEEeecCCcCcHHHHHHHHHHH-hCCC-CCceEEEecCeEcCCCCccccC--CCCCCCEEEEE
Q 023198 213 HSIFVKLLNGR--YIILEVAKFDTVRDVKDKLFRE-IGQA-PDSQRLVFKRQQLEDDRNLASY--KIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~-~gi~-~~~q~L~~~g~~L~d~~tL~~y--~I~~~~~l~l~ 282 (286)
|+|+||+++|+ ++++++++++||++||++|+++ .|+| +++|||+|+|+.|+|+.||++| +|++|++|||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 89999999998 6789999999999999999996 5666 5999999999999999999999 99999999985
No 115
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.65 E-value=3e-16 Score=120.78 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=67.1
Q ss_pred eEEEEEeecceEE-EeecCCcCcHHHHHHHH-----HHHhCCCC--CceEEEecCeEcCCCCccccCCCCCC------CE
Q 023198 213 HSIFVKLLNGRYI-ILEVAKFDTVRDVKDKL-----FREIGQAP--DSQRLVFKRQQLEDDRNLASYKIVNE------SI 278 (286)
Q Consensus 213 ~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I-----~~~~gi~~--~~q~L~~~g~~L~d~~tL~~y~I~~~------~~ 278 (286)
|.|++|+++|+.+ .+++++++||++||++| ++++|+|+ ++|||+|+|+.|+|+.||++|+|+.| +|
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 8999999999888 79999999999999999 45678987 89999999999999999999999998 78
Q ss_pred EEEEcCC
Q 023198 279 VNLTDLG 285 (286)
Q Consensus 279 l~l~~~~ 285 (286)
+||++|.
T Consensus 97 mhlVlrl 103 (126)
T 1se9_A 97 MHVIIQA 103 (126)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9998763
No 116
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.65 E-value=1.1e-17 Score=133.90 Aligned_cols=76 Identities=36% Similarity=0.510 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
|+|+|++++ |++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||
T Consensus 1 MqI~VK~l~-G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCC-CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 789999999 9999999999999999999999999999999999999999999999999999999999999999987
No 117
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=7.8e-16 Score=119.51 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=70.4
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
..|+|+|++. |+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+.+++++
T Consensus 31 ~~m~I~Vk~~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 31 KIIKVTVKTP--KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCEEEEEECS--SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred CcEEEEEEeC--CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 4799999987 7899999999999999999999999999999999999999999999999999999999999998876
No 118
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=1.9e-16 Score=117.47 Aligned_cols=71 Identities=21% Similarity=0.193 Sum_probs=68.5
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|.|+||+. |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||.+|+|++|++|||+.+
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR 88 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEe
Confidence 88999988 899999999999999999999999999999999999999999999999999999999999876
No 119
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.64 E-value=4.7e-16 Score=118.45 Aligned_cols=72 Identities=26% Similarity=0.353 Sum_probs=69.4
Q ss_pred eEEEEEee---cceEEEeecCC-cCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLL---NGRYIILEVAK-FDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~---~g~~~~l~v~~-~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+|+++ +|+++.+++++ ++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+.+
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 88999998 89999999998 99999999999999999999999999999999999999999999999999875
No 120
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.64 E-value=4.4e-16 Score=128.74 Aligned_cols=73 Identities=45% Similarity=0.642 Sum_probs=70.9
Q ss_pred eeEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 212 KHSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 212 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
.|+|+||+++|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|+.+
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 3999999999999999999999999999999999999999999999999999999999999999999999875
No 121
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-16 Score=120.91 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=67.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHH------HhCCC--CCceEEEecCeEcCCCCccccCCCCCCC--EEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFR------EIGQA--PDSQRLVFKRQQLEDDRNLASYKIVNES--IVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~------~~gi~--~~~q~L~~~g~~L~d~~tL~~y~I~~~~--~l~l~ 282 (286)
|.|+||+++|+++++++++++||++||++|++ ++|+| +++|||+|+|+.|+|+.||++|+|+.|+ ++||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 88999999999999999999999999999999 78884 8999999999999999999999999776 78888
Q ss_pred cCC
Q 023198 283 DLG 285 (286)
Q Consensus 283 ~~~ 285 (286)
.|.
T Consensus 98 ~r~ 100 (125)
T 2gow_A 98 ARE 100 (125)
T ss_dssp ECS
T ss_pred ecC
Confidence 763
No 122
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=1.1e-15 Score=118.73 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=68.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+. |+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.||.+|+|++|++|+|+.+
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~ 103 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK 103 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEec
Confidence 88999998 899999999999999999999999999999999999999999999999999999999999875
No 123
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.63 E-value=8e-16 Score=112.70 Aligned_cols=70 Identities=27% Similarity=0.364 Sum_probs=67.0
Q ss_pred eEEEEEeecceEEEe-ecCCcCcHHHHHHHHHHHhCCCCCceEEE---ecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIIL-EVAKFDTVRDVKDKLFREIGQAPDSQRLV---FKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l-~v~~~~tV~~lK~~I~~~~gi~~~~q~L~---~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
|+|+||. +|+++.+ ++++++||++||++|++++|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+|+-
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence 7888995 8999999 99999999999999999999999999999 999999999999999999999999974
No 124
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.7e-16 Score=115.58 Aligned_cols=72 Identities=17% Similarity=0.085 Sum_probs=66.3
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe--cCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF--KRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
|.++++.++|+++.+++++++||++||++|++++|||+++|+|+| +|+ |+|+.+|++|+|++|++|||+++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 666777789999999999999999999999999999999999996 566 999999999999999999998764
No 125
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=8.4e-16 Score=113.89 Aligned_cols=69 Identities=25% Similarity=0.281 Sum_probs=65.4
Q ss_pred eEEEEEeecceEE-EeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYI-ILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
|+|+|| +.|+++ .+++++++||++||++|++++|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+|+-
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~ 77 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG 77 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence 788999 478999 6999999999999999999999999999999999999999 99999999999999864
No 126
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=7.5e-16 Score=115.52 Aligned_cols=72 Identities=22% Similarity=0.207 Sum_probs=67.2
Q ss_pred eEEEEEeecc----eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCC-CccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNG----RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD-RNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g----~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~-~tL~~y~I~~~~~l~l~~~ 284 (286)
|.|+|+..++ +++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+ +||.+|+|++|++|+|..+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7888988754 7999999999999999999999999999999999999999988 7999999999999999865
No 127
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=1.3e-15 Score=115.08 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=67.9
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|.|+||..+|+ +.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|.+|+|++|++|||+.+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 88 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEEC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 88999998886 789999999999999999999999999999999999999999999999999999999875
No 128
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.62 E-value=1.6e-15 Score=109.89 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=66.0
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~ 134 (286)
+.+. ++++.+ |+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++++++..
T Consensus 11 ~~~~-~~~~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 11 STIK-LTVKFG-GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CCEE-EEEEET-TEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred CcEE-EEEEEC-CEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3444 455567 899999999999999999999999999999999999999999999999999999999998764
No 129
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.60 E-value=5.9e-17 Score=126.59 Aligned_cols=72 Identities=46% Similarity=0.660 Sum_probs=0.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|+.+
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999865
No 130
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.60 E-value=1.2e-15 Score=111.76 Aligned_cols=75 Identities=15% Similarity=0.291 Sum_probs=70.0
Q ss_pred CceEEEEEeCCCCcEEEE-EEcCCccHHHHHHHHHhhhCCCCccEEEE---ECCEEeeccccccccccCCCCeEEEEeec
Q 023198 60 GVMKLYFKTPSNEKTFEL-KANRSDTIENIKFIIEVREGIPVHEYDIY---YGGKLIESYITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l-~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~D~~tL~~~~I~~~s~i~l~~~~ 135 (286)
..|+|+|++ . |+++++ ++++++||.+||++|++++|+|+++|+|+ |+|+.|+|+.+|++|+|.+|++|+|+...
T Consensus 6 ~~m~i~Vk~-~-g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 6 SGLPIIVKW-G-GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CSCCEEEEE-T-TEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred ceEEEEEEE-C-CEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 368999997 5 899999 99999999999999999999999999999 99999999999999999999999998664
Q ss_pred c
Q 023198 136 K 136 (286)
Q Consensus 136 ~ 136 (286)
.
T Consensus 84 ~ 84 (90)
T 1v5t_A 84 E 84 (90)
T ss_dssp S
T ss_pred c
Confidence 3
No 131
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.60 E-value=2.7e-15 Score=110.70 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=63.3
Q ss_pred eEEEEEeecc--eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEec--Ce---Ec-CCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNG--RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFK--RQ---QL-EDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~--g~---~L-~d~~tL~~y~I~~~~~l~l~~ 283 (286)
++++|+..++ ..+.+++++++||++||++|+.++|+|+++|||+|. |+ .| +|+++|++|+|++|++|+|++
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 6677776655 488999999999999999999999999999999997 45 44 899999999999999999986
No 132
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=2e-15 Score=111.80 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=68.5
Q ss_pred CceEEEEEeCCCCcEE-EEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 60 GVMKLYFKTPSNEKTF-ELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
..|+|+|++ . |+++ .+++++++||.+||++|++.+|+|+++|+|+|.|+.|+|+ +|++|+|.++++|+|+....
T Consensus 6 ~~m~i~Vk~-~-g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 6 SGYSVTVKW-G-KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CEEEEEEEE-T-TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred cEEEEEEEE-C-CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 368999996 5 8999 6999999999999999999999999999999999999999 99999999999999986654
No 133
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.59 E-value=3.3e-15 Score=114.46 Aligned_cols=64 Identities=22% Similarity=0.396 Sum_probs=61.7
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|||+.|
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~r 107 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALK 107 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEEC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 5889999999999999999999999999999999999999999999999999999999999865
No 134
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=113.50 Aligned_cols=74 Identities=19% Similarity=0.242 Sum_probs=68.0
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEE--CCEEeeccccccccccCCCCeEEEEeecc
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYY--GGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
+|.++++..+ |+++++++++++||++||++|++++||||++|+|+| .|+ |+|+.+|++|+|++|++++|++..-
T Consensus 8 ~m~~~~vk~~-Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 8 RMLDFRVEYR-DRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CEEEEEEECS-SCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred ceEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 5888888888 999999999999999999999999999999999986 566 9999999999999999999987653
No 135
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3.8e-15 Score=110.17 Aligned_cols=74 Identities=20% Similarity=0.226 Sum_probs=69.7
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeecc-ccccccccCCCCeEEEEeeccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESY-ITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~-~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
+.|+|+|++.+ |+.+.++|++++||++||++|++.+ +++|+|+|+|+.|+|+ .+|++|+|.+|++|+++++.+.
T Consensus 6 ~~m~i~Vk~~~-g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLN-DTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETT-TEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 46999999999 9999999999999999999999988 8999999999999999 9999999999999999988654
No 136
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3.3e-15 Score=110.48 Aligned_cols=69 Identities=25% Similarity=0.358 Sum_probs=66.4
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCC-CccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDD-RNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~-~tL~~y~I~~~~~l~l~~~ 284 (286)
|.|+||+++|+.+.+++++++||++||++|++++ +++|||+|+|+.|+|+ .+|.+|+|++|++|||+.+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~ 77 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS 77 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence 8899999999999999999999999999999998 9999999999999999 9999999999999999876
No 137
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=110.98 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=65.7
Q ss_pred eEEEEEeecceEE--Ee-ecCCcCcHHHHHHHHHHH-hCCCCCceEEEec--CeEcCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYI--IL-EVAKFDTVRDVKDKLFRE-IGQAPDSQRLVFK--RQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~--~l-~v~~~~tV~~lK~~I~~~-~gi~~~~q~L~~~--g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
|+|+|++++|+.+ .+ ++++++||++||++|++. .|+|+++|||+|. |+.|+|+.||++|+|++|++|++-+
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~KD 87 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRD 87 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEECC
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence 8999999998775 58 999999999999999994 8999999999976 9999999999999999999999865
No 138
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.59 E-value=1.1e-16 Score=128.23 Aligned_cols=72 Identities=46% Similarity=0.660 Sum_probs=0.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+|++++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|+.|
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence 678999999999999999999999999999999999999999999999999999999999999999999875
No 139
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3.2e-15 Score=113.06 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=67.5
Q ss_pred eEEEEEeecc---eEEEeecC--------C-cCcHHHHHHHHHHHh--CCCCCc-eEEEecCeEcCCCCccccCCCCCCC
Q 023198 213 HSIFVKLLNG---RYIILEVA--------K-FDTVRDVKDKLFREI--GQAPDS-QRLVFKRQQLEDDRNLASYKIVNES 277 (286)
Q Consensus 213 ~~i~vk~~~g---~~~~l~v~--------~-~~tV~~lK~~I~~~~--gi~~~~-q~L~~~g~~L~d~~tL~~y~I~~~~ 277 (286)
|.|+||+.++ +++.++++ + ++||++||++|++++ |+|+++ |+|+|+|+.|+|+.+|.+|+|++|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999888 88999854 4 499999999999999 999999 9999999999999999999999999
Q ss_pred EEEEEcCC
Q 023198 278 IVNLTDLG 285 (286)
Q Consensus 278 ~l~l~~~~ 285 (286)
+|||+.+.
T Consensus 93 ~i~lv~~~ 100 (107)
T 1x1m_A 93 TVHVLRKS 100 (107)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 99998763
No 140
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=112.66 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=67.1
Q ss_pred eEEEEE-eecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVK-LLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk-~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
++|.|+ ...|+.+.++++++.||.+||+.++...++|+++|+|+|+|+.|+|+.||.+|||++|.||||+.+
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIF 88 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEe
Confidence 566666 556889999999999999999999999999999999999999999999999999999999999865
No 141
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.58 E-value=1.5e-16 Score=130.80 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=0.4
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ 139 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~ 139 (286)
|+|+|++++ |++++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|+ ++|+|+|+++++||.
T Consensus 1 MqI~VKtL~-GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLE-GETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp -----------------------------------------------------------------------------C
T ss_pred CEEEEEcCC-CCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 789999999 999999999999999999999999999999999999999999999999 899999999999873
No 142
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.57 E-value=2.7e-15 Score=108.72 Aligned_cols=66 Identities=18% Similarity=0.354 Sum_probs=60.6
Q ss_pred eecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe-------cCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 219 LLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF-------KRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 219 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-------~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
..+++.+..++++++||++||++|+.++|+|+++|||+| .|+.|+|+++|++|+|++|++|||+++
T Consensus 11 ~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 11 ASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp TCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 345567789999999999999999999999999999996 589999999999999999999999975
No 143
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=4.2e-15 Score=112.38 Aligned_cols=77 Identities=21% Similarity=0.232 Sum_probs=70.2
Q ss_pred CCceEEEEEeCCCC---cEEEEEEc--------C-CccHHHHHHHHHhhh--CCCCcc-EEEEECCEEeecccccccccc
Q 023198 59 SGVMKLYFKTPSNE---KTFELKAN--------R-SDTIENIKFIIEVRE--GIPVHE-YDIYYGGKLIESYITLDVLNI 123 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g---~~~~l~v~--------~-~~tV~~lK~~I~~~~--gip~~~-q~L~~~g~~L~D~~tL~~~~I 123 (286)
...|+|+||+.+ | +++.+++. + ++||++||++|++++ |+|+++ |+|+|+|+.|+|+.+|++|+|
T Consensus 10 ~~~~~i~Vk~~~-~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i 88 (107)
T 1x1m_A 10 LSDWHLAVKLAD-QPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGI 88 (107)
T ss_dssp CCSCCEEEEETT-CTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTC
T ss_pred CCceEEEEEeCC-CCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCC
Confidence 346899999998 8 79999954 4 499999999999999 999999 999999999999999999999
Q ss_pred CCCCeEEEEeecc
Q 023198 124 NNEDTLQMISVPK 136 (286)
Q Consensus 124 ~~~s~i~l~~~~~ 136 (286)
.++++|+|+.+..
T Consensus 89 ~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 89 QPGSTVHVLRKSW 101 (107)
T ss_dssp CTTCEEEEEESSC
T ss_pred CCCCEEEEEeCCC
Confidence 9999999998764
No 144
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.57 E-value=1.2e-14 Score=107.21 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=65.0
Q ss_pred CCceEEEEEeCCCC--cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEEC--CE---Ee-eccccccccccCCCCeEE
Q 023198 59 SGVMKLYFKTPSNE--KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYG--GK---LI-ESYITLDVLNINNEDTLQ 130 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g--~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~---~L-~D~~tL~~~~I~~~s~i~ 130 (286)
.+.+.|+|+... + +.+++++++++||++||++|+.++|+|+++|||+|. |+ +| +|+++|++|+|++|++|+
T Consensus 13 ~~~v~l~It~s~-~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 13 SDFIKVNVSNSH-NDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCEEEEEEEESS-CSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCeEEEEEEECC-CCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 456788888765 4 489999999999999999999999999999999997 55 55 899999999999999999
Q ss_pred EE
Q 023198 131 MI 132 (286)
Q Consensus 131 l~ 132 (286)
++
T Consensus 92 lv 93 (95)
T 2kjr_A 92 VV 93 (95)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 145
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=2.9e-15 Score=110.78 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=65.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+|| ++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+ +.+|.+|+|++|++|+|+..
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEec
Confidence 788888 57899999999999999999999999999999999999999994 55999999999999999764
No 146
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=8.9e-15 Score=107.49 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=65.9
Q ss_pred eEEEEEeecceEEEeecCCc-----CcHHHHHHHHHHHhCCCCCceEEEecCeEcCC-CCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKF-----DTVRDVKDKLFREIGQAPDSQRLVFKRQQLED-DRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~-----~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d-~~tL~~y~I~~~~~l~l~~~ 284 (286)
|.|+|+. .|+.+.++++++ +||++||++|++++|+|+++|+|+|+|+.|+| +.+|.+|+|++|++|+|+.+
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 7888997 588899999995 99999999999999999999999999999998 66899999999999999865
No 147
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.8e-15 Score=109.17 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=64.0
Q ss_pred ceEEEEEeCCCCcEE--EE-EEcCCccHHHHHHHHHh-hhCCCCccEEEEEC--CEEeeccccccccccCCCCeEEE
Q 023198 61 VMKLYFKTPSNEKTF--EL-KANRSDTIENIKFIIEV-REGIPVHEYDIYYG--GKLIESYITLDVLNINNEDTLQM 131 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~--~l-~v~~~~tV~~lK~~I~~-~~gip~~~q~L~~~--g~~L~D~~tL~~~~I~~~s~i~l 131 (286)
.|+|+|+++. |+.+ ++ +|+|++||++||++|++ +.|+||++|||+|. |+.|+|+.+|++|+|.++++|++
T Consensus 10 ~M~I~Vk~~~-g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAK-TREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESS-SCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCC-CCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 4899999998 7775 58 99999999999999999 48999999999977 99999999999999999998765
No 148
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.5e-14 Score=106.33 Aligned_cols=75 Identities=15% Similarity=0.290 Sum_probs=68.5
Q ss_pred CceEEEEEeCCCCcEEEEEEcCC-----ccHHHHHHHHHhhhCCCCccEEEEECCEEeec-cccccccccCCCCeEEEEe
Q 023198 60 GVMKLYFKTPSNEKTFELKANRS-----DTIENIKFIIEVREGIPVHEYDIYYGGKLIES-YITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~-----~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D-~~tL~~~~I~~~s~i~l~~ 133 (286)
..|+|+|++ . |+.+.+++.++ +||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|+|.++++|+|+.
T Consensus 6 ~~~~v~Vk~-~-~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 6 SGLTVTVTH-S-NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp SSEEEEEEC-S-SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CeEEEEEEE-C-CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 468999998 5 78999999995 99999999999999999999999999999998 6689999999999999987
Q ss_pred ecc
Q 023198 134 VPK 136 (286)
Q Consensus 134 ~~~ 136 (286)
+..
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 654
No 149
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=108.28 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=70.3
Q ss_pred ceEEEEE-eCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 61 VMKLYFK-TPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 61 ~~~i~Vk-~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
.+.|.|+ .+. |+.+.+++.++.||.+||+.++...++|+++|+|+|+|+.|.|+.||++|||++|.++||+.+...+
T Consensus 15 ~itvkv~l~~~-~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 15 LATVKVVLIPV-GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp CEEEEEEETTT-CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred cEEEEEEEcCC-CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 4666776 555 8899999999999999999999999999999999999999999999999999999999999887554
No 150
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.54 E-value=1.7e-14 Score=127.57 Aligned_cols=77 Identities=38% Similarity=0.559 Sum_probs=72.2
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
++.|+|+|++++ |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++
T Consensus 231 ~~~MqI~VKtl~-Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 578999999999 99999999999999999999999999999999999999999999999999999999999998763
No 151
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.54 E-value=9.6e-15 Score=108.06 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=62.9
Q ss_pred eEEEEEeecc--eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCe---E----cCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNG--RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQ---Q----LEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~---~----L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+.++|+..+. ..+.+++++++||++||++|+.++|+|+++|||+|.|+ . ++|+++|.+|+|++|++|+|++
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 4566665444 47899999999999999999999999999999999883 3 5899999999999999999987
Q ss_pred C
Q 023198 284 L 284 (286)
Q Consensus 284 ~ 284 (286)
.
T Consensus 95 ~ 95 (97)
T 2kj6_A 95 L 95 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 152
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.53 E-value=1.4e-14 Score=104.88 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=58.7
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEE-------CCEEeeccccccccccCCCCeEEEEee
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYY-------GGKLIESYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~-------~g~~L~D~~tL~~~~I~~~s~i~l~~~ 134 (286)
++.+...+++++||++||++|+.++|+||++|||+| .|+.|+|+++|++|||++|++|||+-+
T Consensus 14 ~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 14 MRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp CCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 667789999999999999999999999999999996 588899999999999999999999854
No 153
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=3.1e-14 Score=105.27 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=63.6
Q ss_pred eEEEEEeecce-EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecC---eE----cCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGR-YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR---QQ----LEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g---~~----L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+.+.|+..... .+.+++++++||++||++|+.++|+|+++|||+|.| +. ++|+++|.+|||++|++||+.+.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~ 87 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH 87 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEEC
Confidence 56677765442 688999999999999999999999999999999986 43 58999999999999999999875
Q ss_pred C
Q 023198 285 G 285 (286)
Q Consensus 285 ~ 285 (286)
+
T Consensus 88 ~ 88 (95)
T 1v6e_A 88 S 88 (95)
T ss_dssp S
T ss_pred C
Confidence 4
No 154
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.51 E-value=9.8e-14 Score=122.66 Aligned_cols=72 Identities=46% Similarity=0.657 Sum_probs=69.8
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+.|
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876
No 155
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.50 E-value=4.5e-14 Score=104.45 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=63.6
Q ss_pred CceEEEEEeCC-CCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC---EE----eeccccccccccCCCCeEEE
Q 023198 60 GVMKLYFKTPS-NEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG---KL----IESYITLDVLNINNEDTLQM 131 (286)
Q Consensus 60 ~~~~i~Vk~~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g---~~----L~D~~tL~~~~I~~~s~i~l 131 (286)
+.+.++|.... .++.+.+++++++||++||++|+.++|+||++|||+|.| +. ++|+++|++|+|++|++|++
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 35677777644 135799999999999999999999999999999999988 33 49999999999999999998
Q ss_pred Ee
Q 023198 132 IS 133 (286)
Q Consensus 132 ~~ 133 (286)
+-
T Consensus 93 vd 94 (97)
T 2kj6_A 93 ID 94 (97)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 156
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=1.2e-14 Score=107.48 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=66.4
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~ 135 (286)
..|+|+|+. . |+++.+++++++||++||++|++++|+|+++|+|+|.|+.|+ +.+|++|+|.++++|+|+.+.
T Consensus 16 ~~~~i~Vk~-~-g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 16 ELVDLKIIW-N-KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCEEEEEEE-T-TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCSS
T ss_pred ceEEEEEEE-C-CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEecc
Confidence 368899985 5 899999999999999999999999999999999999999994 459999999999999987654
No 157
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.47 E-value=1.3e-13 Score=106.57 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=63.7
Q ss_pred eEEEEEeecce-EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecC---e---E-cCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGR-YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR---Q---Q-LEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g---~---~-L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+.+.|+..++. .+.+++++++||++||++|+.++|+|+++|||+|.| + . ++|+++|.+|||++|++||+++.
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 56777765443 688999999999999999999999999999999987 3 2 48999999999999999999975
Q ss_pred C
Q 023198 285 G 285 (286)
Q Consensus 285 ~ 285 (286)
+
T Consensus 87 ~ 87 (122)
T 1t0y_A 87 T 87 (122)
T ss_dssp T
T ss_pred C
Confidence 4
No 158
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=2.3e-13 Score=100.13 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=75.2
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
..|+|+|+..+ |+.+.++|.+++++..|+++++++.|+|++++|++|+|++|+++.|+++|++.+|++|++++++.||
T Consensus 6 ~~i~ikVk~~~-g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 6 DHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp CEEEEEEECTT-SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CeEEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 46899999999 9999999999999999999999999999999999999999999999999999999999999999887
No 159
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.47 E-value=5.4e-14 Score=127.69 Aligned_cols=78 Identities=22% Similarity=0.435 Sum_probs=72.4
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHh---hhCCCCccEEEEECCEEeeccccccccccCCCCeE-EEEeec
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEV---REGIPVHEYDIYYGGKLIESYITLDVLNINNEDTL-QMISVP 135 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~---~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i-~l~~~~ 135 (286)
+.|+|+||+++ |+++.++|++++||.+||++|++ ++|+|+++|||+|+|+.|+|+++|++|+|.++++| +++.++
T Consensus 6 ~~M~I~VKtl~-Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 6 SAVTITLKTLQ-QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp CCCCEEEEETT-TEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred ceEEEEEEeCC-CCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 46999999999 99999999999999999999999 67899999999999999999999999999999998 777777
Q ss_pred ccc
Q 023198 136 KEL 138 (286)
Q Consensus 136 ~~~ 138 (286)
+++
T Consensus 85 ~~~ 87 (368)
T 1oqy_A 85 KAG 87 (368)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 160
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.47 E-value=4.1e-15 Score=122.21 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|+|++++|++++++|++++||++||.+|++++|||+++|+|+|+|++|+|+.||+ ++|||||+.|
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR 67 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK 67 (189)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999 8999999865
No 161
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.46 E-value=5.7e-14 Score=106.08 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=65.7
Q ss_pred eEEEEEeecceEEEeecC-CcCcHHHHHHHHHHHhCCCCCceEEEecCe-----------E----cCCCCccccCCCCCC
Q 023198 213 HSIFVKLLNGRYIILEVA-KFDTVRDVKDKLFREIGQAPDSQRLVFKRQ-----------Q----LEDDRNLASYKIVNE 276 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~-----------~----L~d~~tL~~y~I~~~ 276 (286)
|.|+||+++|+. .++++ +++||.+||++|++++|+|+++|+|+|.|+ . ++|+.||.+|||++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999976 78999 999999999999999999999999999888 4 589999999999999
Q ss_pred CEEEEEcC
Q 023198 277 SIVNLTDL 284 (286)
Q Consensus 277 ~~l~l~~~ 284 (286)
++|||...
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99999764
No 162
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.43 E-value=1.4e-13 Score=125.03 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=67.9
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHH---HhCCCCCceEEEecCeEcCCCCccccCCCCCCCEE-EEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFR---EIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIV-NLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~---~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l-~l~~~ 284 (286)
|.|+||+++|+++.++|.+++||.+||++|++ ++|+|+++|||+|+|+.|+|+++|.+|+|++|++| +|+.+
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 88999999999999999999999999999999 67899999999999999999999999999999998 66654
No 163
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=4.1e-13 Score=99.18 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=62.7
Q ss_pred ceEEEEEeCCCCc-EEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC---EE----eeccccccccccCCCCeEEEE
Q 023198 61 VMKLYFKTPSNEK-TFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG---KL----IESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 61 ~~~i~Vk~~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g---~~----L~D~~tL~~~~I~~~s~i~l~ 132 (286)
.+.|+|+... .. .+.+++.+++||++||++|+.++|+|+++|||+|.| +. ++|+.+|++|+|.+|++|+++
T Consensus 7 ~v~l~I~~~~-~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 7 GVMVFISSSL-NSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CEEEEEEETT-SSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred EEEEEEEECC-CCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 3677787755 32 688999999999999999999999999999999986 43 589999999999999999986
Q ss_pred e
Q 023198 133 S 133 (286)
Q Consensus 133 ~ 133 (286)
.
T Consensus 86 d 86 (95)
T 1v6e_A 86 D 86 (95)
T ss_dssp C
T ss_pred E
Confidence 4
No 164
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=8.3e-13 Score=97.09 Aligned_cols=72 Identities=11% Similarity=0.220 Sum_probs=69.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|+|.|++.+|+.+.+.|.+++++..|++.++++.|+|++++||+|.|+.|.++.|.++|++++|++|+++.+
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 889999999999999999999999999999999999999999999999999999999999999999999864
No 165
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.41 E-value=3.6e-13 Score=97.58 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=63.5
Q ss_pred eEEEEEeecceEEEee-cCCcCcHHHHHHHHHHHhCCCCCceEEEec--CeEcC---CCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILE-VAKFDTVRDVKDKLFREIGQAPDSQRLVFK--RQQLE---DDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~-v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~--g~~L~---d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|.|.||+.+|+.. +. +++++||++||++|++++|+|+++|+|+|+ ++.|. |+.+|++|||++|++|++...
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 5789999999765 77 999999999999999999999999999986 47874 789999999999999998754
No 166
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.40 E-value=1e-12 Score=101.53 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=63.7
Q ss_pred ceEEEEEeCCCCc-EEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC---E---E-eeccccccccccCCCCeEEEE
Q 023198 61 VMKLYFKTPSNEK-TFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG---K---L-IESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 61 ~~~i~Vk~~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g---~---~-L~D~~tL~~~~I~~~s~i~l~ 132 (286)
.+.|+|+... +. .+.+++.+++||++||++|+.++|+|+++|||+|.| + + ++|+.+|++|||.+|++|+++
T Consensus 6 ~v~l~V~~~~-~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 6 VYDLEITTNA-TDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp EEEEEEEESS-CCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred EEEEEEEECC-CCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 4677887755 43 688999999999999999999999999999999977 4 3 489999999999999999998
Q ss_pred ee
Q 023198 133 SV 134 (286)
Q Consensus 133 ~~ 134 (286)
..
T Consensus 85 d~ 86 (122)
T 1t0y_A 85 DV 86 (122)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 167
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.39 E-value=1.8e-13 Score=103.34 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=66.6
Q ss_pred ceEEEEEeCCCCcEEEEEEc-CCccHHHHHHHHHhhhCCCCccEEEEECCE-----------E----eeccccccccccC
Q 023198 61 VMKLYFKTPSNEKTFELKAN-RSDTIENIKFIIEVREGIPVHEYDIYYGGK-----------L----IESYITLDVLNIN 124 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g~-----------~----L~D~~tL~~~~I~ 124 (286)
.|.|+||+.+ |+. .++|+ +++||.+||++|++++|+|+++|+|+|.|+ + ++|+.+|++|+|.
T Consensus 7 ~M~irvrs~~-G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 7 GTMLRVRSRD-GLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CEEEEEECSS-CEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred eEEEEEECCC-CCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 5899999998 866 79999 999999999999999999999999999888 4 5899999999999
Q ss_pred CCCeEEEEeec
Q 023198 125 NEDTLQMISVP 135 (286)
Q Consensus 125 ~~s~i~l~~~~ 135 (286)
+|++|+|....
T Consensus 85 ~G~~L~l~~~~ 95 (107)
T 1wf9_A 85 HGSMVYLAYEG 95 (107)
T ss_dssp TTCEEECCCSS
T ss_pred CCCEEEEEeCC
Confidence 99999987553
No 168
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=2.5e-12 Score=93.91 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=74.8
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
..|.|.|+..+ |+.+.+.|.+++++..|++.+.++.|+|++++|++|+|++|.++.|.++|++.+|++|++++...||
T Consensus 4 ~~i~ikVk~~~-g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 4 DHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp CEEEEEEECTT-SCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CeEEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 46889999998 9999999999999999999999999999999999999999999999999999999999999998887
No 169
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.36 E-value=8.6e-13 Score=118.05 Aligned_cols=70 Identities=19% Similarity=0.390 Sum_probs=64.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE---ecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV---FKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~---~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
++|.|| ++|+++.+++++++||++||++|++++|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+|+-
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVG 78 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEEC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEc
Confidence 678888 4899999999999999999999999999999999999 899999999999999999999999873
No 170
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.36 E-value=3.7e-12 Score=89.03 Aligned_cols=70 Identities=11% Similarity=0.230 Sum_probs=67.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
+++.|+..+|+.+.+.|.++++++.|++..+++.|+|++++||+|.|+.|.++.|.++|++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5788999999999999999999999999999999999999999999999999999999999999999985
No 171
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.33 E-value=8.8e-12 Score=91.45 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=71.9
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
..|.|.|+..+ |+.+.+.|.+++++..|++.+.++.|+|++++|++|+|++|.++.|.++|++.+|++|++++++.||
T Consensus 16 ~~i~ikV~~~~-g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 16 DHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CEEEEEEECTT-SCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEECCC-CCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 36788999988 9999999999999999999999999999999999999999999999999999999999999988765
No 172
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=7.5e-12 Score=91.31 Aligned_cols=72 Identities=11% Similarity=0.220 Sum_probs=69.4
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
++|.|++.+|+.+.+.|.+++++..|++..+++.|+|++++||+|.|+.|.++.|.++|++++|++|++...
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 788999999999999999999999999999999999999999999999999999999999999999999864
No 173
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.30 E-value=1.6e-12 Score=94.12 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=62.7
Q ss_pred eEEEEEeCCCCcEEEEE-EcCCccHHHHHHHHHhhhCCCCccEEEEEC--CEEee---ccccccccccCCCCeEEEEee
Q 023198 62 MKLYFKTPSNEKTFELK-ANRSDTIENIKFIIEVREGIPVHEYDIYYG--GKLIE---SYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~~L~---D~~tL~~~~I~~~s~i~l~~~ 134 (286)
|+|.|++.+ |+.. ++ +++++||++||++|++++|+|+++|+|+|+ ++.|+ |+.+|++|||.+|++|++...
T Consensus 1 m~i~vr~~~-G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKG-GTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETT-EEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCC-CCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 679999999 8654 77 999999999999999999999999999987 47774 788999999999999887644
No 174
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.29 E-value=1.4e-11 Score=86.14 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=67.4
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
|.|.|+..+ |+.+.+.|.+++++..|++.+.++.|+|+++++++|+|++|.++.|.++|++.+|++|++.
T Consensus 2 i~lkV~~~~-g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTT-SCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 688999988 9999999999999999999999999999999999999999999999999999999999875
No 175
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.28 E-value=3.8e-12 Score=113.87 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=68.0
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE---ECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY---YGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
..+.|.||. + |+++++++++++||++||++|++++||||++|+|+ |+|+.|+|+.+|++|+|++|++++|+....
T Consensus 4 ~~i~i~Vk~-~-g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 4 KEVVVIVKW-S-GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp CEEEEEEEE-T-TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred ceEEEEEEE-C-CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 357889996 5 89999999999999999999999999999999999 899999999999999999999999987765
Q ss_pred cc
Q 023198 137 EL 138 (286)
Q Consensus 137 ~~ 138 (286)
..
T Consensus 82 ~~ 83 (320)
T 3shq_A 82 AD 83 (320)
T ss_dssp --
T ss_pred hh
Confidence 43
No 176
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.28 E-value=1.6e-11 Score=87.33 Aligned_cols=70 Identities=7% Similarity=0.104 Sum_probs=67.3
Q ss_pred eEEEEEeecce-EEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGR-YIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
++|.|+..+|+ .+.+.|.+++++..|++..+++.|++++++||+|.|+.|.++.|..+|++++|++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 78899999995 89999999999999999999999999999999999999999999999999999999985
No 177
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.27 E-value=2.2e-11 Score=91.10 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=71.4
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
..|.|.|+. + |+.+.+.|.+++++..|++.+.++.|++++++|++|+|++|.++.|.++|++.+|++|++++++.||
T Consensus 30 ~~I~IkV~~-~-g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 30 THINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp SEEEEEEEC-S-SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEec-C-CcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 468999999 8 9999999999999999999999999999999999999999999999999999999999999988765
No 178
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.26 E-value=2.3e-11 Score=89.24 Aligned_cols=72 Identities=11% Similarity=0.220 Sum_probs=69.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
++|.|+..+|+.+.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|..+|++.+|++|++...
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence 788899999999999999999999999999999999999999999999999999999999999999999864
No 179
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.24 E-value=1.2e-11 Score=92.38 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=74.5
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
..|.|.|+..+ |+.+.+.|.+++++..|+..+.++.|+|++++|++|+|++|.++.|.++|++.++++|++++++.||
T Consensus 23 ~~I~IkVk~~~-g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 23 DHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp CCEEEEEECSS-SCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred CeEEEEEECCC-CCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 46889999998 9999999999999999999999999999999999999999999999999999999999999988876
No 180
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.23 E-value=1.2e-11 Score=93.17 Aligned_cols=79 Identities=9% Similarity=0.172 Sum_probs=75.0
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ 139 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~ 139 (286)
..|.|.|+..+ |+.+.+.|.+++++..|++.+.++.|+|++++|++|+|++|.++.|.++|++.+|++|++++...||+
T Consensus 25 ~~I~IkVk~~~-g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 25 ALVAVKVVNAD-GAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCEEEEEEETT-SCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CeEEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 46889999998 99999999999999999999999999999999999999999999999999999999999999988874
No 181
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.23 E-value=5.5e-11 Score=84.51 Aligned_cols=72 Identities=11% Similarity=0.228 Sum_probs=68.3
Q ss_pred CceEEEEEeCCCCc-EEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198 60 GVMKLYFKTPSNEK-TFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
..|.|.|+..+ |+ .+.+.|.+++++..|++.+.++.|+|++++|++|+|++|.++.|.++|++.+|++|++.
T Consensus 6 ~~i~ikV~~~~-g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 6 QELRLRVQGKE-KHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCEEEEEECSS-TTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CEEEEEEEeCC-CCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 46889999998 86 89999999999999999999999999999999999999999999999999999999874
No 182
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.22 E-value=2.8e-11 Score=90.42 Aligned_cols=72 Identities=11% Similarity=0.220 Sum_probs=69.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
++|.|+..+|+.+.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|..+|++++|++|++...
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 96 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 96 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 788899999999999999999999999999999999999999999999999999999999999999999764
No 183
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.18 E-value=7.5e-11 Score=88.18 Aligned_cols=71 Identities=14% Similarity=0.275 Sum_probs=68.3
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
++|.|+. +|+.+.+.|.+++++..|++..+++.|++++++||+|.|+.|.++.|..+|++++|++|++...
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence 7889999 9999999999999999999999999999999999999999999999999999999999998764
No 184
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.16 E-value=3.7e-11 Score=90.50 Aligned_cols=72 Identities=10% Similarity=0.263 Sum_probs=69.3
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
++|.|+..+|+.+.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|..+|++++|++|++...
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 788899999999999999999999999999999999999999999999999999999999999999999864
No 185
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.12 E-value=2.1e-10 Score=84.83 Aligned_cols=72 Identities=18% Similarity=0.144 Sum_probs=61.4
Q ss_pred eEEEEEe---ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecC-------eEc-CCCCccccCCCCCCCEEEE
Q 023198 213 HSIFVKL---LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR-------QQL-EDDRNLASYKIVNESIVNL 281 (286)
Q Consensus 213 ~~i~vk~---~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g-------~~L-~d~~tL~~y~I~~~~~l~l 281 (286)
+.+.|+. .+|+.+...++++.||++||.+|+..+|+|+..|+|.|.+ ..| +|..+|.+|+|.+|++||+
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 4455554 4678889999999999999999999999999999998862 235 6888999999999999999
Q ss_pred EcC
Q 023198 282 TDL 284 (286)
Q Consensus 282 ~~~ 284 (286)
.+.
T Consensus 90 ~d~ 92 (97)
T 1wjn_A 90 RWS 92 (97)
T ss_dssp ECC
T ss_pred Eec
Confidence 873
No 186
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.01 E-value=1.5e-09 Score=80.19 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=62.0
Q ss_pred ceEEEEEeC--CCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC------E-Ee-eccccccccccCCCCeEE
Q 023198 61 VMKLYFKTP--SNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG------K-LI-ESYITLDVLNINNEDTLQ 130 (286)
Q Consensus 61 ~~~i~Vk~~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g------~-~L-~D~~tL~~~~I~~~s~i~ 130 (286)
.+.|+|+.. .+|+.+...+.++.||++||.+|+..+|+|+..|+|+|.+ . .| +|..+|++|++.+|++|+
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~ 88 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL 88 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence 456667653 2288999999999999999999999999999999998762 2 24 678899999999999999
Q ss_pred EEee
Q 023198 131 MISV 134 (286)
Q Consensus 131 l~~~ 134 (286)
+...
T Consensus 89 V~d~ 92 (97)
T 1wjn_A 89 VRWS 92 (97)
T ss_dssp EECC
T ss_pred EEec
Confidence 8764
No 187
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.88 E-value=9.7e-09 Score=77.51 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=68.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
++|.|+..+|+.+.+.|.+++++..|+...+++.|+++.++||+|.|+.|.++.|..++++.+|++|.+...
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 788888889999999999999999999999999999999999999999999999999999999999998764
No 188
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.83 E-value=3.7e-08 Score=81.62 Aligned_cols=87 Identities=11% Similarity=0.163 Sum_probs=76.2
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc-
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL- 138 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~- 138 (286)
..+.|.|+ .+ |+.+.+.+.+++++..|+....++.|+|+.++|++|+|++|.++.|.+++++.+|++|+++....||
T Consensus 28 ~~I~LkV~-~~-g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 28 THINLKVS-DG-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp CCEEEEEE-CS-SCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred CeEEEEEe-cC-CCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 35778886 46 9999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred ---eeEEeecCCC
Q 023198 139 ---QEIFVQTPTS 148 (286)
Q Consensus 139 ---~~I~V~~~~g 148 (286)
+.+..+...|
T Consensus 106 kd~v~Fs~~GD~G 118 (200)
T 3pge_A 106 GETIKFVADGDIG 118 (200)
T ss_dssp -CCEEEEEECSSC
T ss_pred CceEEEEeeccCC
Confidence 4444443334
No 189
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.82 E-value=3.3e-08 Score=74.56 Aligned_cols=75 Identities=17% Similarity=0.303 Sum_probs=70.3
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~ 135 (286)
..+.|.|+..+ |+.+.+.|.+++++..|+....++.|+|++++|++|+|++|.++.|.+++++.+|++|.++...
T Consensus 39 ~~I~LKV~~qd-g~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 39 EYIKLKVIGQD-SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp CEEEEEEECTT-SCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEcCC-CCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 46788998888 9999999999999999999999999999999999999999999999999999999999988654
No 190
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.68 E-value=6.4e-08 Score=80.15 Aligned_cols=71 Identities=14% Similarity=0.275 Sum_probs=66.9
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+++.|+. +|+.+.+.|.+++++..|+...+++.|+++.++||+|.|+.|.++.|..++++.+|++|++...
T Consensus 30 I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~ 100 (200)
T 3pge_A 30 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 100 (200)
T ss_dssp EEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEec
Confidence 6777874 8999999999999999999999999999999999999999999999999999999999998764
No 191
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1e-07 Score=77.54 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=72.1
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ 139 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~ 139 (286)
.+.|.|+ .+ |+.+.+.|.+++++..|++...++.|+|+.+++++|+|++|.++.|.+++++.+|++|+++....||.
T Consensus 57 ~InLKVk-~d-G~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 57 HINLKVS-DG-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEEEEE-CS-SCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred cEEEEEe-cC-CCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 5777886 46 99999999999999999999999999999999999999999999999999999999999999988873
No 192
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.4e-07 Score=76.78 Aligned_cols=71 Identities=13% Similarity=0.253 Sum_probs=66.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
++|.|+. +|+.+.+.|.+++++..|++..+++.|+++.+++|+|.|+.|.++.|..++++.+|++|++...
T Consensus 58 InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~le 128 (207)
T 3tix_A 58 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHRE 128 (207)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCC
T ss_pred EEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 6777774 8999999999999999999999999999999999999999999999999999999999998753
No 193
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.54 E-value=6.6e-08 Score=68.58 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=58.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeE-----cCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQ-----LEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~-----L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
|.+.++..+| ++.+++++++|+.+|+++|++.++++++.|.+.++..+ +.++.+|++.||+.|++|++..
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~~ 79 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLFP 79 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC--
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEec
Confidence 5677888887 66789999999999999999999999999888765554 3478899999999999999753
No 194
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.46 E-value=1e-06 Score=63.86 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=47.8
Q ss_pred eCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEe--eccccccccccC
Q 023198 68 TPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLI--ESYITLDVLNIN 124 (286)
Q Consensus 68 ~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L--~D~~tL~~~~I~ 124 (286)
.+..+..+.+.+.+.+||..+|++|++++|||+.+|+|+|.|+.| +.....+.|.-.
T Consensus 19 ~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~T 77 (94)
T 4efo_A 19 SLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKT 77 (94)
T ss_dssp ETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCC
T ss_pred EcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCC
Confidence 333389999999999999999999999999999999999999875 556666666543
No 195
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.41 E-value=2.8e-06 Score=58.55 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=63.4
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCC-ceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPD-SQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+++..+......+.+.+.++.+|..|-+.-+.+.|||++ ..+|.|.|..|+.+.++.+|++.+|+.|.++.
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 344455555667889999999999999999999999999 89999999999999999999999999998874
No 196
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.39 E-value=1.2e-06 Score=63.53 Aligned_cols=66 Identities=12% Similarity=0.218 Sum_probs=51.9
Q ss_pred eecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcC--CCCccccCCC-CCCCEEEEEcC
Q 023198 219 LLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLE--DDRNLASYKI-VNESIVNLTDL 284 (286)
Q Consensus 219 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~--d~~tL~~y~I-~~~~~l~l~~~ 284 (286)
...+..+.+.+.+++|+..+|++|++++|||+.+|+|+|+|+.|. .+++-..|-- ...+.|.|..+
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 346788899999999999999999999999999999999998765 4444445543 44556666654
No 197
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.34 E-value=5.7e-08 Score=80.07 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=1.2
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ 139 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~ 139 (286)
..|.|.| ..+ |+.+.++|.++++...|++...++.|+|++++|++|+|+++.++.|.+++++.+|++|+++....||.
T Consensus 20 e~InLKV-~qd-GseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~ 97 (227)
T 3v7o_A 20 THINLKV-SDG-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGL 97 (227)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CeEEEEE-eCC-CCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCc
Confidence 3677888 666 99999999999999999999999999999999999999999999999999999999999999998874
No 198
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.32 E-value=6.1e-06 Score=56.89 Aligned_cols=71 Identities=11% Similarity=0.252 Sum_probs=64.3
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCc-cEEEEECCEEeeccccccccccCCCCeEEEEe
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVH-EYDIYYGGKLIESYITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~ 133 (286)
+.+.++... ...+.+++.++.+|.++-+....+.|||++ ..+|.|.|..|+.+.++++|++.+++.|.+++
T Consensus 10 ~~~~~~~~~-~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSK-SEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESS-SCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccC-CCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 445666666 778999999999999999999999999999 89999999999999999999999999998764
No 199
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.26 E-value=1.1e-07 Score=78.41 Aligned_cols=70 Identities=14% Similarity=0.282 Sum_probs=0.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
|++.| ..+|+.+.+.|.+++++..|++..+++.|++++++||+|.|+.+.++.|..++++++|++|++..
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence 77788 66899999999999999999999999999999999999999999999999999999999999875
No 200
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.21 E-value=0.0003 Score=66.96 Aligned_cols=261 Identities=12% Similarity=0.083 Sum_probs=172.3
Q ss_pred CCCcchHHHHHHHHhhchhcCCCCCCCeEEec------Ccccc-cCCccccc--CCCCCceeee---e------------
Q 023198 3 VKKTEKIEKLKLRIHAKVEEEILEDLPELFYA------GQQLE-NGLTVIDY--GIPNNSVIHN---D------------ 58 (286)
Q Consensus 3 v~~~dtv~~vK~~i~~~~~~~i~~~~q~l~~~------g~~L~-d~~~l~~y--~i~~~s~l~l---~------------ 58 (286)
|...++|.++-..|.++ .|+|++....+|. ...|+ .+.|+.+. .|.+|..|-. .
T Consensus 153 v~~~~kv~~l~~~i~~~--~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~ 230 (530)
T 2ylm_A 153 TPISCKIRDLLPVMCDR--AGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAK 230 (530)
T ss_dssp EETTCBGGGTHHHHHHH--HTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHH
T ss_pred ECCCCCHHHHHHHHHHH--cCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEecCCccccccCCCHH
Confidence 45778999999999999 9999999888886 23477 57899999 9999999876 1
Q ss_pred ------CCceEEEEEeC--CCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEEC----CE---E--eecccccccc
Q 023198 59 ------SGVMKLYFKTP--SNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYG----GK---L--IESYITLDVL 121 (286)
Q Consensus 59 ------~~~~~i~Vk~~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~----g~---~--L~D~~tL~~~ 121 (286)
...+.|.++.. .+...|.++++...|-.++.++|.+..|++|...|++-. +. . ...+.+|++.
T Consensus 231 ~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~ 310 (530)
T 2ylm_A 231 EYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDL 310 (530)
T ss_dssp HHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHH
T ss_pred HHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccccCCCCCccccCCCCcHHHH
Confidence 12456666642 226779999999999999999999999999999877522 22 1 1223344332
Q ss_pred ccC---CC-CeEE-EEeecc-------cceeEEeecCCC---eEEEecCCCccHHhHHHHHHHHhcCCCC---CCeEEE-
Q 023198 122 NIN---NE-DTLQ-MISVPK-------ELQEIFVQTPTS---TVKLEVRRAHTVLDVKKMVESMRICIPS---EDCELF- 182 (286)
Q Consensus 122 ~I~---~~-s~i~-l~~~~~-------~~~~I~V~~~~g---~~~l~v~~~~tV~~lK~~I~~~~~gip~---~~q~L~- 182 (286)
=-. .- ..+. .++..+ ..+.|+...... .+.+.++.+.||.||-+++.. +.++|. ...++.
T Consensus 311 l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k-~~~~~~~~~~~lRl~e 389 (530)
T 2ylm_A 311 LQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKK-AVELGEKASGKLRLLE 389 (530)
T ss_dssp STTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHT-TCCCCTTCCCCEEEEE
T ss_pred hhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHH-hcCCCcCCcccEEEEE
Confidence 110 11 1121 111111 135554443332 666778899999999999999 999874 445554
Q ss_pred -eCCe---eecCCccccccccCCCceEEEEeee----------eeEEEEEe-------ecceEEEeecCCcCcHHHHHHH
Q 023198 183 -RGGE---QLQNLKTLAYYDIKENEVLQIIRHV----------KHSIFVKL-------LNGRYIILEVAKFDTVRDVKDK 241 (286)
Q Consensus 183 -~~g~---~L~d~~tL~~y~i~~~~~i~l~~~~----------~~~i~vk~-------~~g~~~~l~v~~~~tV~~lK~~ 241 (286)
++++ .+.++.+++..+-....++.+..-+ .+.|.|-. .-|.-|.+.|.+..|..++|++
T Consensus 390 v~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~R 469 (530)
T 2ylm_A 390 IVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKR 469 (530)
T ss_dssp EETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHH
T ss_pred EECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHH
Confidence 5666 5677777765433223344432111 02222211 2477888999999999999999
Q ss_pred HHHHhCCCCC---ceEE--EecC--eEcCCCC
Q 023198 242 LFREIGQAPD---SQRL--VFKR--QQLEDDR 266 (286)
Q Consensus 242 I~~~~gi~~~---~q~L--~~~g--~~L~d~~ 266 (286)
|+++.|++.. ..++ +-.+ ..++|+.
T Consensus 470 l~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d 501 (530)
T 2ylm_A 470 IQSLLDIQEKEFEKFKFAIVMMGRHQYINEDE 501 (530)
T ss_dssp HHHHHCCCHHHHTTCEEEEEETTEEEECCTTT
T ss_pred HHHHhCCCHhhhhhEEEEEEECCcccccCCcc
Confidence 9999999854 4453 4333 4566654
No 201
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.18 E-value=1.8e-06 Score=61.11 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=58.8
Q ss_pred ceeEEeecCCCeEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCee-----ecCCccccccccCCCceEEEE
Q 023198 138 LQEIFVQTPTSTVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQ-----LQNLKTLAYYDIKENEVLQII 208 (286)
Q Consensus 138 ~~~I~V~~~~g~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~-----L~d~~tL~~y~i~~~~~i~l~ 208 (286)
.|.+.|+..+|+..+++++++|+.+|+++|.+ ..++|++.|.+.+.... +.++.++++++++.|+.|++.
T Consensus 4 ~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~-~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDGVKRITATKRETAATFLKKVAK-EFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSEEEECCCCSSCCHHHHHHHHHH-HTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCCCEEEEcCCcChHHHHHHHHHH-HcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 47788888889778889999999999999999 99999988877754332 347889999999999999874
No 202
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.18 E-value=8.1e-05 Score=67.68 Aligned_cols=134 Identities=22% Similarity=0.333 Sum_probs=105.5
Q ss_pred C-eEEEecCCCccHHhHHHHHHHHhcC----CCCCCeEEEe------CCeeecCCccccccccCCCceEEEEeeeeeEEE
Q 023198 148 S-TVKLEVRRAHTVLDVKKMVESMRIC----IPSEDCELFR------GGEQLQNLKTLAYYDIKENEVLQIIRHVKHSIF 216 (286)
Q Consensus 148 g-~~~l~v~~~~tV~~lK~~I~~~~~g----ip~~~q~L~~------~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~i~ 216 (286)
+ +-++..+++.||.++-..|.+ +.. .+++++.|.. .|.=|+++++|..|++++|+.+....+ .+.+.
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e-~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~-~~~~~ 89 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRE-RIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKK-QRPLK 89 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHT-TCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEEC-EEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHH-hcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCc-eeEEE
Confidence 6 778999999999999999977 542 3577787776 345589999999999999999987554 36888
Q ss_pred EEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEecC---------eEcCCCCccccCCCCCCCEEEEEc
Q 023198 217 VKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVFKR---------QQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 217 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~g---------~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
|..++|....+.+++++|+.++-..|+.+.|+.... .-|.+.. .-|+..+++.+.+.....++++..
T Consensus 90 V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frv 166 (371)
T 3ivf_A 90 IRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRR 166 (371)
T ss_dssp EECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEE
T ss_pred EECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEE
Confidence 999999999999999999999999999999987543 4465532 234556777777766666776643
No 203
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.17 E-value=8.9e-06 Score=59.47 Aligned_cols=70 Identities=7% Similarity=0.118 Sum_probs=65.1
Q ss_pred eEEEEEeecc-eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNG-RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g-~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
+++.|+..+| +.+.+.|.++++...|...-+++.|++++..+|+|.|..|..+.|-.+.++.+|++|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 6777887788 478899999999999999999999999999999999999999999999999999999874
No 204
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.08 E-value=2.4e-05 Score=65.54 Aligned_cols=90 Identities=13% Similarity=0.192 Sum_probs=78.1
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
...+.|.|+. + |+.+.+.+.++++...|++...++.|+|++++|++|+|+.+.+..|..+.+..++++|.+.....+|
T Consensus 19 ~~~i~ikv~~-~-~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 19 ETHINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp CSEEEEEEEC-S-SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred CCcEEEEEEc-C-CCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 3456777776 6 8889999999999999999999999999999999999999999999999999999999999988887
Q ss_pred eeEEeecCCC-eEE
Q 023198 139 QEIFVQTPTS-TVK 151 (286)
Q Consensus 139 ~~I~V~~~~g-~~~ 151 (286)
.. ++.+.+| ...
T Consensus 97 ~t-~~~~~sGl~~~ 109 (209)
T 3uf8_A 97 ST-VVTTESGLKYE 109 (209)
T ss_dssp CC-CEECTTSCEEE
T ss_pred cc-ccCCCCceEEE
Confidence 43 3446667 443
No 205
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.05 E-value=1.7e-05 Score=56.65 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=68.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
|.+.|-..+|+..++.+.|++|+.++-++.++++|+.+++..|.|+++.|+-+.++.-.|+.+|+.|.|+..
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 677888889999999999999999999999999999999999999999999999999999999999999864
No 206
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.04 E-value=6.9e-05 Score=68.17 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=100.7
Q ss_pred CCCCcchHHHHHHHHhhchhcC--CCCCCCeEEe------cCcccccCCcccccCCCCCceeeeeCCceEEEEEeCCCCc
Q 023198 2 KVKKTEKIEKLKLRIHAKVEEE--ILEDLPELFY------AGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSNEK 73 (286)
Q Consensus 2 ~v~~~dtv~~vK~~i~~~~~~~--i~~~~q~l~~------~g~~L~d~~~l~~y~i~~~s~l~l~~~~~~i~Vk~~~~g~ 73 (286)
.++|+.||.++-.+|++++.+. -+.+.--|+- .|..|++++||..|++.++..++.-+..+.+.|..++ |.
T Consensus 18 ~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~~~~~V~l~d-g~ 96 (371)
T 3ivf_A 18 QFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIRMLD-GT 96 (371)
T ss_dssp EECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECEEEEEEECTT-SC
T ss_pred EECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCceeEEEEECcC-CC
Confidence 4679999999999999996553 3455566765 2456999999999999999999986677889999999 99
Q ss_pred EEEEEEcCCccHHHHHHHHHhhhCCCC-ccEEEEECC---------EEeeccccccccccCCCCeEEEE
Q 023198 74 TFELKANRSDTIENIKFIIEVREGIPV-HEYDIYYGG---------KLIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 74 ~~~l~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~~g---------~~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
...+.++++.|+.++=..|..+.|+.. +...|.+.. .-|+..+++.+.+.....++.+.
T Consensus 97 ~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~fr 165 (371)
T 3ivf_A 97 VKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLR 165 (371)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEE
Confidence 999999999999999999999999774 346666532 12455667777665544454443
No 207
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.99 E-value=8.5e-06 Score=62.42 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=59.3
Q ss_pred EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCC-------------------------------------ceEEE
Q 023198 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPD-------------------------------------SQRLV 256 (286)
Q Consensus 214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~-------------------------------------~q~L~ 256 (286)
.+.|++++|...++.|+.+.||.+++..||.+.||+.. .|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 57899999999999999999999999999999999854 33332
Q ss_pred e--cCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 257 F--KRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 257 ~--~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
. ++.-|++++||.++||.++++|-|..+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 235668899999999999999887653
No 208
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.94 E-value=5.8e-05 Score=55.10 Aligned_cols=72 Identities=13% Similarity=0.252 Sum_probs=65.6
Q ss_pred CceEEEEEeCCCC-cEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEE
Q 023198 60 GVMKLYFKTPSNE-KTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 60 ~~~~i~Vk~~~~g-~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
..+.|.|+... | +.+.+.|.++++...|.....++.|++++..+++|+|..+..+.|.+++++.+|++|.+.
T Consensus 24 ~~I~LkV~~~d-g~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKE-KHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESS-SSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCC-CCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 45777888777 7 489999999999999999999999999999999999999999999999999999998764
No 209
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.89 E-value=4e-05 Score=64.16 Aligned_cols=71 Identities=14% Similarity=0.275 Sum_probs=65.7
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+++.|+. +|+.+.+.+..+++...|++..|++.|++++++||.|.|+.+.+..|-.+..+.++++|.+...
T Consensus 22 i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred EEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence 6677776 7788899999999999999999999999999999999999999999999999999999987653
No 210
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.86 E-value=7.2e-05 Score=53.87 Aligned_cols=71 Identities=15% Similarity=0.277 Sum_probs=66.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+++.|+. .|..+.+.+..++....|...-|++.|++++..|+.|.|..+.++.|-.+.++.+|++|.+...
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 6777874 7888999999999999999999999999999999999999999999999999999999998764
No 211
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.84 E-value=2.2e-06 Score=76.87 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=2.1
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccce
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQ 139 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~ 139 (286)
..+.|.|+. . |+.+.+.|.++++...|++...++.|++++++|++|+|+.+.++.|.+++++.+|++|.+.....|||
T Consensus 20 ~~I~LKV~~-~-g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 20 THINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CeEEEEEec-C-CcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 356677776 5 88999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred eEE
Q 023198 140 EIF 142 (286)
Q Consensus 140 ~I~ 142 (286)
..|
T Consensus 98 ~~Y 100 (360)
T 3ix6_A 98 RTY 100 (360)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 212
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.79 E-value=9.6e-05 Score=52.74 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=67.2
Q ss_pred cceeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEee
Q 023198 137 ELQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIRH 210 (286)
Q Consensus 137 ~~~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~ 210 (286)
+||.|.|-.+++ ..++.|.++.++.+|-++-.+ +.|+.++++.|.|+++.++-+-.++--|+.+|+.+.|+..
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~-K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCR-RQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHH-HTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHH-HhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 578899988999 999999999999999999999 9999999999999999999999999999999999999754
No 213
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.72 E-value=4.7e-06 Score=74.80 Aligned_cols=71 Identities=14% Similarity=0.275 Sum_probs=0.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+++.|+. +|+.+.+.|.++++...|++..+++.|++++.+|+.|.|+.+.++.|.+++++++|++|++...
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence 6777876 6788999999999999999999999999999999999999999999999999999999988753
No 214
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.60 E-value=0.00012 Score=51.47 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=57.7
Q ss_pred EEEEE--eecceEEEeecCCcCcHHHHHHHHHHHhCCCC-----CceEEEecCeEcCCCCccccCCCCCCCEEEE
Q 023198 214 SIFVK--LLNGRYIILEVAKFDTVRDVKDKLFREIGQAP-----DSQRLVFKRQQLEDDRNLASYKIVNESIVNL 281 (286)
Q Consensus 214 ~i~vk--~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-----~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l 281 (286)
+|.+. -..++++-++++...|+..|...+.+..+++. ...|..-+|..|.++.+|++|+|.+||.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 34444 36889999999999999999999999999765 2345667999999999999999999999976
No 215
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.56 E-value=0.0019 Score=61.34 Aligned_cols=180 Identities=9% Similarity=0.115 Sum_probs=126.6
Q ss_pred EEEEEcCCccHHHHHHHHHhhhCCCCccEEEEEC----CE---E-e-----eccccccccccCCCCeEEEEeecc-----
Q 023198 75 FELKANRSDTIENIKFIIEVREGIPVHEYDIYYG----GK---L-I-----ESYITLDVLNINNEDTLQMISVPK----- 136 (286)
Q Consensus 75 ~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~----g~---~-L-----~D~~tL~~~~I~~~s~i~l~~~~~----- 136 (286)
.++.|..++|+.++|+.|.+..|+|+++|||-.. ++ . + ....++.++.- .++.+.+.+...
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~~ 116 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPELA 116 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHHH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccccC
Confidence 3567889999999999999999999999999422 11 1 1 11123333211 233333333210
Q ss_pred ------------cceeEEeecCC--C-eE----EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeC------Ceeec-C
Q 023198 137 ------------ELQEIFVQTPT--S-TV----KLEVRRAHTVLDVKKMVESMRICIPSEDCELFRG------GEQLQ-N 190 (286)
Q Consensus 137 ------------~~~~I~V~~~~--g-~~----~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~------g~~L~-d 190 (286)
..+-||+|-.+ . ++ .+.|+.+++|.++-..|.+ +.|+|++.-...|. ...|+ .
T Consensus 117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~-~~g~p~dt~l~lyEEi~~~~ie~l~~~ 195 (530)
T 2ylm_A 117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCD-RAGFIQDTSLILYEEVKPNLTERIQDY 195 (530)
T ss_dssp TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHH-HHTCCTTCCEEEEEEEETTEEEECCCS
T ss_pred CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHH-HcCCCCCCceEEEEecCCCceeEcccc
Confidence 12556666322 1 22 3568889999999999999 99999998776663 23566 6
Q ss_pred Ccccccc--ccCCCceEEEEeee--------------------eeEEEEEee---cceEEEeecCCcCcHHHHHHHHHHH
Q 023198 191 LKTLAYY--DIKENEVLQIIRHV--------------------KHSIFVKLL---NGRYIILEVAKFDTVRDVKDKLFRE 245 (286)
Q Consensus 191 ~~tL~~y--~i~~~~~i~l~~~~--------------------~~~i~vk~~---~g~~~~l~v~~~~tV~~lK~~I~~~ 245 (286)
+.|+... .+.+|++|..-... ++.|.++.. +...+.+.++...|-.++-++|+++
T Consensus 196 ~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~ 275 (530)
T 2ylm_A 196 DVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 275 (530)
T ss_dssp SSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHH
T ss_pred cccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHH
Confidence 7899999 99999998775431 155555532 3567999999999999999999999
Q ss_pred hCCCCCceEEE
Q 023198 246 IGQAPDSQRLV 256 (286)
Q Consensus 246 ~gi~~~~q~L~ 256 (286)
.|++|...||.
T Consensus 276 l~~dP~~lRf~ 286 (530)
T 2ylm_A 276 LNTDPMLLQFF 286 (530)
T ss_dssp HTSCGGGEEEE
T ss_pred hCCCchhEEEE
Confidence 99999998875
No 216
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.56 E-value=0.0003 Score=49.94 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=61.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEc---CCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQL---EDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L---~d~~tL~~y~I~~~~~l~l~~ 283 (286)
..|.|+.++|+.+.-...+++|+.+|..-|.. .+.+...+.|+ |..+.+ +.+.||.+.|+.++++|.+-.
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 56788999999988899999999999999998 67888888997 678888 457899999999999998854
No 217
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.51 E-value=0.00072 Score=48.65 Aligned_cols=72 Identities=11% Similarity=0.213 Sum_probs=66.2
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEee
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~ 134 (286)
.+.|.|+. . |..+.+.+..++....|.....++.|++++.-|++|.|..+.++.|-++.++.++++|.+++-
T Consensus 21 ~IniKV~~-~-g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 21 LFPLKIRC-R-ADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CEEEEEEC-S-SSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred eEEEEEEc-C-CcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 46778884 5 899999999999999999999999999999999999999999999999999999999987753
No 218
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.46 E-value=0.00018 Score=55.01 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=58.7
Q ss_pred EEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCc-------------------------------------cEEE
Q 023198 63 KLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVH-------------------------------------EYDI 105 (286)
Q Consensus 63 ~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~-------------------------------------~q~L 105 (286)
.+.|+.++ |...++.|+.+.||.+++..|..+.||+.. +|+|
T Consensus 13 ~LkV~llD-g~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 13 PLKIRMLD-GTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEECTT-SCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred cEEEEcCC-CCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 58899999 999999999999999999999999999855 3333
Q ss_pred EE--CCEEeeccccccccccCCCCeEEEEee
Q 023198 106 YY--GGKLIESYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 106 ~~--~g~~L~D~~tL~~~~I~~~s~i~l~~~ 134 (286)
.. .+.-|++++||.++||.+++++.|..+
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred cccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 21 124578899999999999999887644
No 219
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.42 E-value=2e-05 Score=72.18 Aligned_cols=81 Identities=11% Similarity=0.221 Sum_probs=0.0
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeeccccee
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQE 140 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~ 140 (286)
.+.|.|+. + |..+.+.|.++++...|++...++.|+|+.+++++|+|+++.++.|.+++++.+|++|.+.....||..
T Consensus 30 ~i~lkv~~-~-~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n 107 (389)
T 4da1_A 30 HINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN 107 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEec-C-CcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence 45566665 5 888899999999999999999999999999999999999999999999999999999999999888755
Q ss_pred EEe
Q 023198 141 IFV 143 (286)
Q Consensus 141 I~V 143 (286)
.++
T Consensus 108 ~~~ 110 (389)
T 4da1_A 108 LYF 110 (389)
T ss_dssp ---
T ss_pred cce
Confidence 554
No 220
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.25 E-value=4.2e-05 Score=70.07 Aligned_cols=70 Identities=14% Similarity=0.289 Sum_probs=0.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+++.|+. +|..+.+.|.++++...|++..+++.|+++.+++|.|.|+.+.++.|-.+.++.+|++|.+..
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~ 100 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHR 100 (389)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeee
Confidence 6677776 778888999999999999999999999999999999999999999999999999999998764
No 221
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.16 E-value=0.002 Score=47.95 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=63.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcC---CCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLE---DDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~---d~~tL~~y~I~~~~~l~l~~~ 284 (286)
..|.|+.++|+.+.-...+++|+.+|..-|....+.+.....|+ |..+.+. .++||.+.|+.+..+|.+...
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 56778999999999999999999999999999988887788886 6788886 368999999999999998764
No 222
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.02 E-value=0.0026 Score=44.63 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=56.8
Q ss_pred eEEEEEe--CCCCcEEEEEEcCCccHHHHHHHHHhhhCCCC-----ccEEEEECCEEeeccccccccccCCCCeEEE
Q 023198 62 MKLYFKT--PSNEKTFELKANRSDTIENIKFIIEVREGIPV-----HEYDIYYGGKLIESYITLDVLNINNEDTLQM 131 (286)
Q Consensus 62 ~~i~Vk~--~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~-----~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l 131 (286)
+.|++.. -. ++++.+.++...||..|.+.+-+..+++. .+.|+.-.+..|.++.+|++|+|.+|+.+.+
T Consensus 5 I~ITidl~~y~-~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYN-GSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTT-CCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccC-CceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4566664 34 89999999999999999999999888764 2345556688899999999999999998764
No 223
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.00 E-value=0.0019 Score=49.26 Aligned_cols=71 Identities=13% Similarity=0.224 Sum_probs=62.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEc--C-CCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQL--E-DDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L--~-d~~tL~~y~I~~~~~l~l~~~ 284 (286)
..|.||.++|..+.-...+++||.+|..-|... +.+...+.|+ |..+.| . .+.||.+.|+.+..+|.+..+
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 678889999999999999999999999999887 8888888886 678888 3 478999999999998888764
No 224
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.88 E-value=0.0049 Score=43.47 Aligned_cols=71 Identities=21% Similarity=0.316 Sum_probs=59.5
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEe---eccccccccccCCCCeEEEE
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLI---ESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L---~D~~tL~~~~I~~~s~i~l~ 132 (286)
+...|-||.++ |+.+.-....++||.+|...|.. .+.++....|+ |-.+.+ +.+.||.+.|+.+.+++.+-
T Consensus 6 ~~~~i~iRlpd-G~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 6 PVSKLRIRTPS-GEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp CEEEEEEECTT-SCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred CeEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 45678899998 99998899999999999999998 66777788887 557777 34789999999988877764
No 225
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.44 E-value=0.0092 Score=44.19 Aligned_cols=64 Identities=28% Similarity=0.408 Sum_probs=46.1
Q ss_pred ceEEEeecCCcCcHHHHHHHHHHHh--CCCCC------ceEEEe----cCeEcCCC-------------CccccCCCCCC
Q 023198 222 GRYIILEVAKFDTVRDVKDKLFREI--GQAPD------SQRLVF----KRQQLEDD-------------RNLASYKIVNE 276 (286)
Q Consensus 222 g~~~~l~v~~~~tV~~lK~~I~~~~--gi~~~------~q~L~~----~g~~L~d~-------------~tL~~y~I~~~ 276 (286)
+..+.+.|...|||.++|++|.+.. |.|.+ ...|-+ .|+.|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568889999999999999997653 45544 445544 35566652 58999999999
Q ss_pred CEEEEEcCC
Q 023198 277 SIVNLTDLG 285 (286)
Q Consensus 277 ~~l~l~~~~ 285 (286)
+++-|+.+|
T Consensus 103 atl~l~~~~ 111 (111)
T 4e71_A 103 ATLILSKVG 111 (111)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEeCC
Confidence 999999875
No 226
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.35 E-value=0.011 Score=41.18 Aligned_cols=67 Identities=10% Similarity=0.217 Sum_probs=55.7
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE---ecCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV---FKRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~---~~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+.|+.+..+...+.|+|..+..++--.|++++.+.++...|. -.+.+|+-+++|.||||+. ++..+.
T Consensus 13 LvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~ 82 (91)
T 2daj_A 13 VVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDV 82 (91)
T ss_dssp EEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEEC
T ss_pred EEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheecc
Confidence 344445556667899999999999999999999999999886 3678999999999999985 766654
No 227
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.33 E-value=0.012 Score=43.66 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=59.9
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE--ecCeEcC--CCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV--FKRQQLE--DDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~g~~L~--d~~tL~~y~I~~~~~l~l~~~ 284 (286)
..|.|+.++|+.+.-....++||.+|..-|... +..+....|+ |..+.|. .+.||.+.|+.+..+|.+..+
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 567788999999888999999999999999965 5666778885 6788886 468999999999999988654
No 228
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.12 E-value=0.023 Score=43.21 Aligned_cols=72 Identities=13% Similarity=0.239 Sum_probs=60.5
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEe--e-ccccccccccCCCCeEEEE
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLI--E-SYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L--~-D~~tL~~~~I~~~s~i~l~ 132 (286)
.+...|-||.++ |+.+.-....++||.+|...|... +.++....|+ |-.+.| + .+.||.+.|+.+..++.+.
T Consensus 41 ~~~t~IqIRlPd-G~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPD-GKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTT-SCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 457889999999 999999999999999999999886 7777777886 568888 3 3789999999987777654
No 229
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.07 E-value=0.028 Score=41.68 Aligned_cols=74 Identities=9% Similarity=0.202 Sum_probs=61.6
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEee---ccccccccccCCCCeEEEEee
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLIE---SYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~---D~~tL~~~~I~~~s~i~l~~~ 134 (286)
+...|-||.++ |+.+.-....++||.+|.+.|....+.+.....|+ |-.+.+. .+.||.+.|+.+.+++.+...
T Consensus 12 ~~t~IqIRlpd-G~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 12 TIARIQFRLPD-GSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CCEEEEEECSS-SCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 45788999999 99999999999999999999999888776677775 5577775 378999999999887776644
No 230
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.90 E-value=0.029 Score=41.51 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=44.2
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhh--CCCCc------cEEEEEC----CEEeecc-------------ccccccccCCC
Q 023198 72 EKTFELKANRSDTIENIKFIIEVRE--GIPVH------EYDIYYG----GKLIESY-------------ITLDVLNINNE 126 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~--gip~~------~q~L~~~----g~~L~D~-------------~tL~~~~I~~~ 126 (286)
+..+++.|-..|||.++|++|-+.. |.|.+ ...|-+. |+.|.|. +||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568889999999999999987753 66643 4556552 4556542 68999999999
Q ss_pred CeEEEEe
Q 023198 127 DTLQMIS 133 (286)
Q Consensus 127 s~i~l~~ 133 (286)
+++.++.
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998764
No 231
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.83 E-value=0.019 Score=43.89 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=56.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHh-CCCCCceEEE--ecCeEcCC-CCccccCCCCCCCEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREI-GQAPDSQRLV--FKRQQLED-DRNLASYKIVNESIVN 280 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gi~~~~q~L~--~~g~~L~d-~~tL~~y~I~~~~~l~ 280 (286)
..|.|+..+|..+.-....++||.+|..-|.... +.....+.|+ |..+.+.| +.||.+.|+.+..+|.
T Consensus 53 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 5677888999999999999999999999999864 4556677876 67889975 6899999999865543
No 232
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.70 E-value=0.076 Score=40.11 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=48.7
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHh--CCCC------CceEEEe----cCe-EcCCC-------------CccccCCCC
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREI--GQAP------DSQRLVF----KRQ-QLEDD-------------RNLASYKIV 274 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~--gi~~------~~q~L~~----~g~-~L~d~-------------~tL~~y~I~ 274 (286)
++..+.+.|...|||.++|++|.+.. |.|. +...|-+ .|+ .|.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 45668889999999999999997653 4544 4566654 333 36652 689999999
Q ss_pred CCCEEEEEcCC
Q 023198 275 NESIVNLTDLG 285 (286)
Q Consensus 275 ~~~~l~l~~~~ 285 (286)
+|+++-|+.+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999998653
No 233
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.68 E-value=0.11 Score=39.32 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=48.5
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhh--CCCC------ccEEEEE-C---CEE-eecc-------------ccccccccCC
Q 023198 72 EKTFELKANRSDTIENIKFIIEVRE--GIPV------HEYDIYY-G---GKL-IESY-------------ITLDVLNINN 125 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~--gip~------~~q~L~~-~---g~~-L~D~-------------~tL~~~~I~~ 125 (286)
+..+++.|-..|||.++|++|-+.. |.|. +...|-+ . |+. |.|. +||+.|+|.+
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~d 95 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPE 95 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCT
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCC
Confidence 5678999999999999999987753 6664 5667755 2 332 5442 6999999999
Q ss_pred CCeEEEEeec
Q 023198 126 EDTLQMISVP 135 (286)
Q Consensus 126 ~s~i~l~~~~ 135 (286)
|+++.|+.+.
T Consensus 96 gatv~l~~~~ 105 (127)
T 3h6n_A 96 GASLAMSLID 105 (127)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEEcc
Confidence 9999987553
No 234
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.93 E-value=0.1 Score=40.00 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=47.2
Q ss_pred cEEEEEEcCCccHHHHHHHHHhhh--CCCCc------cEEEEE----CCE-Eeecc-------------ccccccccCCC
Q 023198 73 KTFELKANRSDTIENIKFIIEVRE--GIPVH------EYDIYY----GGK-LIESY-------------ITLDVLNINNE 126 (286)
Q Consensus 73 ~~~~l~v~~~~tV~~lK~~I~~~~--gip~~------~q~L~~----~g~-~L~D~-------------~tL~~~~I~~~ 126 (286)
..+++.|-..|||.++|++|-+.. |.|.+ ...|-+ +|+ .|.|. +||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 578999999999999999988764 67643 345544 243 35442 59999999999
Q ss_pred CeEEEEeecc
Q 023198 127 DTLQMISVPK 136 (286)
Q Consensus 127 s~i~l~~~~~ 136 (286)
+++.++.+..
T Consensus 121 a~l~l~~~~~ 130 (138)
T 2r2o_A 121 ATVALVPCLT 130 (138)
T ss_dssp CEEEEEEC--
T ss_pred CEEEEEECCC
Confidence 9999876543
No 235
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.80 E-value=0.092 Score=38.78 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=58.0
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEE--ECCEEee--ccccccccccCCCCeEEEEe
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIY--YGGKLIE--SYITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--D~~tL~~~~I~~~s~i~l~~ 133 (286)
+...|-||.++ |+.+.-....++||.+|...|... +..+....|+ |-.+.|. .+.||.+.|+.+..++.+..
T Consensus 22 ~~~~IqiRlpd-G~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 22 EVVTVALRCPN-GRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SEEEEEEECTT-SCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 35788999999 999998999999999999999965 5555666775 5577775 47899999999888776643
No 236
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=94.52 E-value=0.11 Score=38.69 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=46.8
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhh--CCCCc------cEEEEE-CC---E-Eeecc-------------ccccccccCC
Q 023198 72 EKTFELKANRSDTIENIKFIIEVRE--GIPVH------EYDIYY-GG---K-LIESY-------------ITLDVLNINN 125 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~--gip~~------~q~L~~-~g---~-~L~D~-------------~tL~~~~I~~ 125 (286)
...+++.|-..|||.++|++|-+.. |.|.+ +..|-+ .| + .|.|. +||+.|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3558888999999999999987653 66643 456654 33 3 25441 6899999999
Q ss_pred CCeEEEEee
Q 023198 126 EDTLQMISV 134 (286)
Q Consensus 126 ~s~i~l~~~ 134 (286)
|+++.++.+
T Consensus 106 gatl~l~~~ 114 (117)
T 4e74_A 106 GSVVALVSK 114 (117)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999998755
No 237
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.49 E-value=0.16 Score=38.94 Aligned_cols=63 Identities=21% Similarity=0.355 Sum_probs=47.1
Q ss_pred eEEEeecCCcCcHHHHHHHHHHHh--CCCCC------ceEEEe----cCe-EcCCC-------------CccccCCCCCC
Q 023198 223 RYIILEVAKFDTVRDVKDKLFREI--GQAPD------SQRLVF----KRQ-QLEDD-------------RNLASYKIVNE 276 (286)
Q Consensus 223 ~~~~l~v~~~~tV~~lK~~I~~~~--gi~~~------~q~L~~----~g~-~L~d~-------------~tL~~y~I~~~ 276 (286)
..+.+.|...|||.++|++|.+.. |+|.. ..-|-+ +|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 568899999999999999998764 45543 334433 343 36653 48999999999
Q ss_pred CEEEEEcCC
Q 023198 277 SIVNLTDLG 285 (286)
Q Consensus 277 ~~l~l~~~~ 285 (286)
+++.|+.+.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999998763
No 238
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=94.47 E-value=0.16 Score=37.89 Aligned_cols=64 Identities=23% Similarity=0.406 Sum_probs=47.1
Q ss_pred ceEEEeecCCcCcHHHHHHHHHHHh--CCCCC------ceEEEe-cC---e-EcCCC-------------CccccCCCCC
Q 023198 222 GRYIILEVAKFDTVRDVKDKLFREI--GQAPD------SQRLVF-KR---Q-QLEDD-------------RNLASYKIVN 275 (286)
Q Consensus 222 g~~~~l~v~~~~tV~~lK~~I~~~~--gi~~~------~q~L~~-~g---~-~L~d~-------------~tL~~y~I~~ 275 (286)
...+.+.|...|||.++|++|.+.. |.|.. ...|-+ .| + .|.|. .||++|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3458888999999999999997653 55544 445544 22 3 35542 6899999999
Q ss_pred CCEEEEEcCC
Q 023198 276 ESIVNLTDLG 285 (286)
Q Consensus 276 ~~~l~l~~~~ 285 (286)
|+++.|+.+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998774
No 239
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.32 E-value=0.18 Score=41.97 Aligned_cols=61 Identities=11% Similarity=0.248 Sum_probs=49.7
Q ss_pred EEEeecCCcCcHHHHHHHHHHHhCCCCC-ceEEE--e-c--CeEcCC-CCccccCCCCCCCEEEEEcC
Q 023198 224 YIILEVAKFDTVRDVKDKLFREIGQAPD-SQRLV--F-K--RQQLED-DRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 224 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~--~-~--g~~L~d-~~tL~~y~I~~~~~l~l~~~ 284 (286)
.+++.++..+|+.+|++.++..++++++ ..||- + . ...|.| ++||.+++|.++..|-+-.|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r 208 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQK 208 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEEC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEe
Confidence 4567889999999999999999999997 68873 3 2 335655 57999999999999887655
No 240
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.95 E-value=0.1 Score=39.63 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=55.2
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhh-CCCCccEEEE--ECCEEeec-cccccccccCCCCe
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVRE-GIPVHEYDIY--YGGKLIES-YITLDVLNINNEDT 128 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~q~L~--~~g~~L~D-~~tL~~~~I~~~s~ 128 (286)
+...|-||.++ |..+.-..+.++||.+|.+.|.... +.+.....|+ |-.+.++| +.||.+.|+.+...
T Consensus 51 ~~t~IqIRlpd-G~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 51 PTTNIQIRLAD-GGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CCCCEEEEETT-TTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred CcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 46788899999 9999999999999999999999863 4555667776 55788865 68999999987543
No 241
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=93.87 E-value=0.24 Score=34.35 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=50.2
Q ss_pred EeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 226 ILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 226 ~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
.-.++-..++..||+.++.+.|++-+.+.+...+..|+++++|.+.+++-...+.+.
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 345666788999999999999999999999888888999999999999888877764
No 242
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.54 E-value=0.45 Score=39.95 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=50.0
Q ss_pred EEEeecCCcCcHHHHHHHHHHHhCCCCC-ceEEEe-----cCeEcCC-CCccccCCCCCCCEEEEEcC
Q 023198 224 YIILEVAKFDTVRDVKDKLFREIGQAPD-SQRLVF-----KRQQLED-DRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 224 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~~-----~g~~L~d-~~tL~~y~I~~~~~l~l~~~ 284 (286)
.++..++..+|+.+|++.++..++|+++ ..||-. ....|.| +.||.++++.++..|-+-.+
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence 3567789999999999999999999997 688843 2446665 58999999999999877654
No 243
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=93.02 E-value=0.78 Score=34.46 Aligned_cols=61 Identities=26% Similarity=0.412 Sum_probs=43.5
Q ss_pred eEEEeecCCcCcHHHHHHHHHHH----hCCCCCc----eEEEe----cCeEcCCC--------------CccccCCCCCC
Q 023198 223 RYIILEVAKFDTVRDVKDKLFRE----IGQAPDS----QRLVF----KRQQLEDD--------------RNLASYKIVNE 276 (286)
Q Consensus 223 ~~~~l~v~~~~tV~~lK~~I~~~----~gi~~~~----q~L~~----~g~~L~d~--------------~tL~~y~I~~~ 276 (286)
..+.+.|...|||.++|++|.+. .|.|..+ ..|-+ .|..|.|. .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46888999999999999999543 4776643 33432 12233321 57899999999
Q ss_pred CEEEEEc
Q 023198 277 SIVNLTD 283 (286)
Q Consensus 277 ~~l~l~~ 283 (286)
+++-++.
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998864
No 244
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=92.64 E-value=0.57 Score=35.18 Aligned_cols=60 Identities=23% Similarity=0.238 Sum_probs=42.7
Q ss_pred cEEEEEEcCCccHHHHHHHHHhh----hCCCCc----cEEEEE-CC---EEee----------cc----ccccccccCCC
Q 023198 73 KTFELKANRSDTIENIKFIIEVR----EGIPVH----EYDIYY-GG---KLIE----------SY----ITLDVLNINNE 126 (286)
Q Consensus 73 ~~~~l~v~~~~tV~~lK~~I~~~----~gip~~----~q~L~~-~g---~~L~----------D~----~tL~~~~I~~~ 126 (286)
..+++.|-..|||.++|++|-+. .|.|.. ...|-+ .| ..|. ++ +||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 57899999999999999997653 477753 445543 22 2332 22 57889999999
Q ss_pred CeEEEE
Q 023198 127 DTLQMI 132 (286)
Q Consensus 127 s~i~l~ 132 (286)
+++.++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 998765
No 245
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=92.59 E-value=0.56 Score=32.55 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=48.6
Q ss_pred ecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEE
Q 023198 153 EVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII 208 (286)
Q Consensus 153 ~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~ 208 (286)
.++-..+...||+.++. +.|++.+.+.+...+..|+++++|.+.+++-.-.+.+.
T Consensus 8 hmDI~epL~~Lk~LLe~-Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 8 AIDINEPIGNLKKLLEP-RLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEESSSBGGGHHHHSHH-HHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hccccCcHHHHHHHHHH-HhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 44556788999999999 99999999999988888999999999999988887753
No 246
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.09 E-value=0.3 Score=40.60 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=51.6
Q ss_pred EEEEEEcCCccHHHHHHHHHhhhCCCCc-cEEEE--E-CCE--Eeec-cccccccccCCCCeEEEEeecccc
Q 023198 74 TFELKANRSDTIENIKFIIEVREGIPVH-EYDIY--Y-GGK--LIES-YITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 74 ~~~l~v~~~~tV~~lK~~I~~~~gip~~-~q~L~--~-~g~--~L~D-~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
.+++.++..+||.++++.+....++|++ .-||- + .+. .|+| +.||.++++.++..|.+-++..+|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567789999999999999999999997 68883 3 333 4655 579999999999999887775443
No 247
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.02 E-value=0.51 Score=39.57 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=52.1
Q ss_pred EEEEEEcCCccHHHHHHHHHhhhCCCCc-cEEEEE-C----CEEeec-cccccccccCCCCeEEEEeecccc
Q 023198 74 TFELKANRSDTIENIKFIIEVREGIPVH-EYDIYY-G----GKLIES-YITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 74 ~~~l~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~-~----g~~L~D-~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
.++..++..+||.++++.+....++|++ .-||-. . ...|.| +.||.++++.++..|.+-.+..+|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3556779999999999999999999997 588853 3 235665 589999999999988887775443
No 248
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=91.93 E-value=0.56 Score=31.91 Aligned_cols=59 Identities=12% Similarity=0.204 Sum_probs=43.2
Q ss_pred eeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEE
Q 023198 139 QEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII 208 (286)
Q Consensus 139 ~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~ 208 (286)
|+|.|+..+. ...+++.+..||.+| -+ ..|+|++......||+....+. +..|+.+.+.
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dL----L~-~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADL----VR-AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHH----HH-TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHH----HH-HcCCCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 5566665533 567899999999998 44 6789999887778998876655 2348887763
No 249
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=90.74 E-value=0.6 Score=31.76 Aligned_cols=60 Identities=15% Similarity=0.229 Sum_probs=45.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
|.+.|+..+.+...+++++..|+++|- +..|+|+..-...-+|+.+..+. +.+|+.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 567777764455568999999999865 57899999887778898886554 2348888765
No 250
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.30 E-value=0.97 Score=31.49 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=51.2
Q ss_pred eeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEe---CCeeecCCccccccccCC
Q 023198 139 QEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFR---GGEQLQNLKTLAYYDIKE 201 (286)
Q Consensus 139 ~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~---~g~~L~d~~tL~~y~i~~ 201 (286)
.++.|+-... ..-+.|.|.-+..++--.|.. +..+.++...|.. .+..|+-+++|.||+++.
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~-Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICS-KCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHH-HTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhh-cccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 3444554444 556789999999999999999 9999999988885 566899999999999986
No 251
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=89.77 E-value=0.29 Score=37.31 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=29.4
Q ss_pred EEeecCCcCcHHHHHHHHHHHhCCCCCceEEE
Q 023198 225 IILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256 (286)
Q Consensus 225 ~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~ 256 (286)
.++.|..+.|+.+|+..|++..|+|+++|||-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW 89 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 89 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEE
Confidence 35789999999999999999999999999984
No 252
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=89.13 E-value=2.7 Score=39.98 Aligned_cols=64 Identities=14% Similarity=0.254 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhh--CCCC------ccEEEEE----CCE-Eeecc-------------ccccccccCC
Q 023198 72 EKTFELKANRSDTIENIKFIIEVRE--GIPV------HEYDIYY----GGK-LIESY-------------ITLDVLNINN 125 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~--gip~------~~q~L~~----~g~-~L~D~-------------~tL~~~~I~~ 125 (286)
...+++.|-..|||.++|++|-+.. |.|. ++..|-+ .|+ .|.|. +||++|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 4678899999999999999987753 6664 4556654 233 34331 6899999999
Q ss_pred CCeEEEEeec
Q 023198 126 EDTLQMISVP 135 (286)
Q Consensus 126 ~s~i~l~~~~ 135 (286)
|+++.++.+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999987665
No 253
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=88.26 E-value=0.95 Score=31.55 Aligned_cols=45 Identities=9% Similarity=0.163 Sum_probs=38.2
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecC
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR 259 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g 259 (286)
+.|.|... -++.++|++..+..+|+++|.++.++|++.-.|.|+.
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 44555542 6899999999999999999999999999999998855
No 254
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=86.77 E-value=5.1 Score=26.52 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=44.2
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
|.|.|+... ....+++....|+.+|.+.+ ++++....+..+|.....+. -+++|+.|.++.
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 566665433 23456677788999998765 67777777788999887654 578899988764
No 255
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=85.62 E-value=3.2 Score=39.46 Aligned_cols=62 Identities=26% Similarity=0.453 Sum_probs=46.0
Q ss_pred eEEEeecCCcCcHHHHHHHHHHHh--CCCC------CceEEEe----cCe-EcCCC-------------CccccCCCCCC
Q 023198 223 RYIILEVAKFDTVRDVKDKLFREI--GQAP------DSQRLVF----KRQ-QLEDD-------------RNLASYKIVNE 276 (286)
Q Consensus 223 ~~~~l~v~~~~tV~~lK~~I~~~~--gi~~------~~q~L~~----~g~-~L~d~-------------~tL~~y~I~~~ 276 (286)
..+.+.|...|||.++|++|-+.. |.|. +...|-+ .|+ .|.|. .||++|+|.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 568889999999999999997653 4443 4455543 233 35442 68999999999
Q ss_pred CEEEEEcC
Q 023198 277 SIVNLTDL 284 (286)
Q Consensus 277 ~~l~l~~~ 284 (286)
+++-|+.+
T Consensus 327 a~v~L~p~ 334 (627)
T 3ig3_A 327 SLVALVPK 334 (627)
T ss_dssp CEEEEEEC
T ss_pred ceEEEEec
Confidence 99998765
No 256
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=85.40 E-value=4.8 Score=38.39 Aligned_cols=63 Identities=19% Similarity=0.323 Sum_probs=46.4
Q ss_pred cEEEEEEcCCccHHHHHHHHHhhh--CCCC------ccEEEEE----CCE-Eeecc-------------ccccccccCCC
Q 023198 73 KTFELKANRSDTIENIKFIIEVRE--GIPV------HEYDIYY----GGK-LIESY-------------ITLDVLNINNE 126 (286)
Q Consensus 73 ~~~~l~v~~~~tV~~lK~~I~~~~--gip~------~~q~L~~----~g~-~L~D~-------------~tL~~~~I~~~ 126 (286)
..+++.|-..|||.++|++|-+.. |.|. ++..|-+ .|+ .|.|. +||+.|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 558899999999999999988643 6664 4455654 233 35442 69999999999
Q ss_pred CeEEEEeec
Q 023198 127 DTLQMISVP 135 (286)
Q Consensus 127 s~i~l~~~~ 135 (286)
+++.|+.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887554
No 257
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=85.15 E-value=8 Score=27.32 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=47.1
Q ss_pred CCceEEEEEeCC------CCcEEEEEEcCCccHHHHHHHHHhhhC-C----------CCccEEEEECCEEeecccccccc
Q 023198 59 SGVMKLYFKTPS------NEKTFELKANRSDTIENIKFIIEVREG-I----------PVHEYDIYYGGKLIESYITLDVL 121 (286)
Q Consensus 59 ~~~~~i~Vk~~~------~g~~~~l~v~~~~tV~~lK~~I~~~~g-i----------p~~~q~L~~~g~~L~D~~tL~~~ 121 (286)
.++|.|.|+... +.....+++....||.+|.+.+..... + ....-.+.-+|+.... ++
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~ 81 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE 81 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC
Confidence 578999999775 134667888778999999999876531 1 0123445667765542 66
Q ss_pred ccCCCCeEEEEee
Q 023198 122 NINNEDTLQMISV 134 (286)
Q Consensus 122 ~I~~~s~i~l~~~ 134 (286)
.+++|+.|.++..
T Consensus 82 ~L~dGDeV~i~pp 94 (98)
T 1vjk_A 82 ELKDGDVVGVFPP 94 (98)
T ss_dssp BCCTTCEEEEESC
T ss_pred CCCCCCEEEEECC
Confidence 7888998877643
No 258
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=84.62 E-value=4.2 Score=34.86 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=51.0
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEe---cCe--EcCCCCccccCCCCCCCEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVF---KRQ--QLEDDRNLASYKIVNESIVNL 281 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~---~g~--~L~d~~tL~~y~I~~~~~l~l 281 (286)
+.+.|..++| ++.+.+++++|+.++-..|+++.|+.... .-|.+ +|. -|+.++++.+.+++.+....+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l 75 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLF 75 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEE
Confidence 4677888888 67899999999999999999999997654 34554 233 467788888877655554433
No 259
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=84.59 E-value=4 Score=35.43 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=51.9
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEe--cCe--EcCCCCccccCCCCCCCEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVF--KRQ--QLEDDRNLASYKIVNESIV 279 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~--~g~--~L~d~~tL~~y~I~~~~~l 279 (286)
+.+.|..++| ++.+.+++++|+.+|-..|+.+.|+.... .-|.| +|. -|+.++++.+.+++.+...
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~ 93 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPV 93 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCE
Confidence 6788888998 78899999999999999999999998644 34554 333 3778888998876655544
No 260
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=84.34 E-value=6.9 Score=25.85 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=46.2
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeec
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVP 135 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~ 135 (286)
.|+|+|.-.. ....+++....|+.+|.+.+ ++++..-.+..+|.....+. -+++|+.+.++-..
T Consensus 4 ~m~i~vNg~~--~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 4 GMKFTVITDD--GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVI 67 (70)
T ss_dssp CEEEEEEETT--EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECT
T ss_pred eEEEEEeCcc--CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEecc
Confidence 5888887543 34566777888999998875 66777777788888776543 57788888776443
No 261
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=84.31 E-value=3.5 Score=39.33 Aligned_cols=62 Identities=21% Similarity=0.358 Sum_probs=45.8
Q ss_pred eEEEeecCCcCcHHHHHHHHHHH--hCCCCC------ceEEEe----cCe-EcCCC-------------CccccCCCCCC
Q 023198 223 RYIILEVAKFDTVRDVKDKLFRE--IGQAPD------SQRLVF----KRQ-QLEDD-------------RNLASYKIVNE 276 (286)
Q Consensus 223 ~~~~l~v~~~~tV~~lK~~I~~~--~gi~~~------~q~L~~----~g~-~L~d~-------------~tL~~y~I~~~ 276 (286)
..+.+.|...|||.++|++|-+. .|.|.. ...|-+ .|+ .|.|. .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 45888999999999999999754 355544 344543 233 45542 58999999999
Q ss_pred CEEEEEcC
Q 023198 277 SIVNLTDL 284 (286)
Q Consensus 277 ~~l~l~~~ 284 (286)
+++-|+.+
T Consensus 354 a~v~L~p~ 361 (644)
T 3hm6_X 354 ATVALVPC 361 (644)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 99998765
No 262
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=83.74 E-value=3.5 Score=29.06 Aligned_cols=47 Identities=4% Similarity=0.032 Sum_probs=36.9
Q ss_pred EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEecCeE
Q 023198 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVFKRQQ 261 (286)
Q Consensus 214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~g~~ 261 (286)
.|.+. .+|..+.+.++++.+..+|.+++.+.++++..+ ..+.|....
T Consensus 8 kvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe 55 (89)
T 1vd2_A 8 RVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred EEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence 34443 367888899999999999999999999998655 667776554
No 263
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=83.61 E-value=0.97 Score=34.35 Aligned_cols=33 Identities=9% Similarity=0.207 Sum_probs=29.3
Q ss_pred EEEEEcCCccHHHHHHHHHhhhCCCCccEEEEE
Q 023198 75 FELKANRSDTIENIKFIIEVREGIPVHEYDIYY 107 (286)
Q Consensus 75 ~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~ 107 (286)
.++.|..+.|+.+++..|.+..|+|+++|||-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 356777899999999999999999999999954
No 264
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=80.79 E-value=3.6 Score=28.56 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=38.0
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECC
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGG 109 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g 109 (286)
|.|.|.. .-++.+.|.++-+..+|.++|.++.++|++.-.|.|..
T Consensus 6 ~~VKV~~---~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHY---KYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEES---SSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEE---EEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 4555543 46899999999999999999999999998888888864
No 265
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=77.92 E-value=2.4 Score=41.21 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=48.3
Q ss_pred ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecC-eEcCCCCccccCCC---------CCCCEEEEEcCC
Q 023198 220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKR-QQLEDDRNLASYKI---------VNESIVNLTDLG 285 (286)
Q Consensus 220 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g-~~L~d~~tL~~y~I---------~~~~~l~l~~~~ 285 (286)
.+++...+.+.++.|+.+++..|++.+|+|++.|.+++.+ -.+........|-+ .+...+++.++|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLFDNR 394 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEECSSC
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEEecc
Confidence 3556667889999999999999999999999999998854 45555556665432 244566666654
No 266
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=77.61 E-value=16 Score=25.71 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=45.9
Q ss_pred eEEEEEeec------c-eEEEeecCCcCcHHHHHHHHHHHhC-C----------CCCceEEEecCeEcCCCCccccCCCC
Q 023198 213 HSIFVKLLN------G-RYIILEVAKFDTVRDVKDKLFREIG-Q----------APDSQRLVFKRQQLEDDRNLASYKIV 274 (286)
Q Consensus 213 ~~i~vk~~~------g-~~~~l~v~~~~tV~~lK~~I~~~~g-i----------~~~~q~L~~~g~~L~d~~tL~~y~I~ 274 (286)
|.|.|+... | ....+++....||.+|.+.+..+.. + ......+.-+|+.... ++-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 666666653 3 3566777788999999999987742 1 1233456678877653 66789
Q ss_pred CCCEEEEEc
Q 023198 275 NESIVNLTD 283 (286)
Q Consensus 275 ~~~~l~l~~ 283 (286)
+|+.|.++.
T Consensus 85 dGDeV~i~p 93 (98)
T 1vjk_A 85 DGDVVGVFP 93 (98)
T ss_dssp TTCEEEEES
T ss_pred CCCEEEEEC
Confidence 999998864
No 267
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=77.55 E-value=8 Score=26.97 Aligned_cols=63 Identities=10% Similarity=0.137 Sum_probs=41.6
Q ss_pred cceeEEeecCCCeEEEecCCC-ccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEe
Q 023198 137 ELQEIFVQTPTSTVKLEVRRA-HTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIR 209 (286)
Q Consensus 137 ~~~~I~V~~~~g~~~l~v~~~-~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~ 209 (286)
..|.|.|+.. ++++... .||.+|.+.+ +++++...+..||..+..+ ...+..+++|+.|.++.
T Consensus 19 ~~M~I~vNGe----~~el~~~~~Tv~dLL~~L-----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 19 GRHMLQLNGK----DVKWKKDTGTIQDLLASY-----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ---CEEETTE----EECCSSSCCBHHHHHHHT-----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred cceEEEECCE----EEECCCCCCcHHHHHHHh-----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 3477777643 4667776 8999986654 4666666777899877543 23445688999998853
No 268
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=77.38 E-value=7.8 Score=36.88 Aligned_cols=68 Identities=10% Similarity=0.160 Sum_probs=51.9
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEec---C--eEcCCCCccccCCCCCCCEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVFK---R--QQLEDDRNLASYKIVNESIVNL 281 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~---g--~~L~d~~tL~~y~I~~~~~l~l 281 (286)
+.+.|.+++| ++.+.+++++|+.+|-..|+.+.|+.... .-|.|. | .-|+.++++.+.+++.+....+
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L 78 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQF 78 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEE
Confidence 5677888888 67899999999999999999999997643 446552 2 3567778888887766655443
No 269
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=76.37 E-value=24 Score=30.38 Aligned_cols=74 Identities=7% Similarity=0.079 Sum_probs=56.2
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCc-cEEEEE--CCEE--eeccccccccccCCCCeEEEEe
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVH-EYDIYY--GGKL--IESYITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~--~g~~--L~D~~tL~~~~I~~~s~i~l~~ 133 (286)
+..+.+.|..++ | ++.+.++++.|+.++=..|-.+.|+... ..-|.| .|.. |+..+++.+..+..+....+.+
T Consensus 20 ~~~~~~~V~lld-g-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~f 97 (314)
T 1h4r_A 20 PKTFTVRIVTMD-A-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHF 97 (314)
T ss_dssp -CEEEEEEECSS-C-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEE
T ss_pred CCeeEEEEEeCC-c-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEE
Confidence 346778888888 8 8889999999999999999999998853 356655 4443 7788889887766666655554
Q ss_pred e
Q 023198 134 V 134 (286)
Q Consensus 134 ~ 134 (286)
+
T Consensus 98 r 98 (314)
T 1h4r_A 98 L 98 (314)
T ss_dssp E
T ss_pred E
Confidence 4
No 270
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=73.57 E-value=12 Score=24.76 Aligned_cols=52 Identities=10% Similarity=0.330 Sum_probs=34.4
Q ss_pred EecCCCccHHhHHHHHHHHhcCCCC--CCeEEEeCCeeecCCccccccccCCCceEEEEe
Q 023198 152 LEVRRAHTVLDVKKMVESMRICIPS--EDCELFRGGEQLQNLKTLAYYDIKENEVLQIIR 209 (286)
Q Consensus 152 l~v~~~~tV~~lK~~I~~~~~gip~--~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~ 209 (286)
+++ ...||.+|.+.+.. +.++.. ....+..||+...+ .++.+++|+.|.+..
T Consensus 16 ~e~-~~~tv~~ll~~L~~-~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQE-KEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLP 69 (74)
T ss_dssp EEE-ECSSHHHHHHHHHT-CTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEEC
T ss_pred Eee-CCCcHHHHHHHHHH-CcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEEC
Confidence 455 56799999999987 544332 33455567776432 345688899988754
No 271
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=73.48 E-value=11 Score=32.49 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=51.6
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-eEEEec---C--eEcCCCCccccCCCCCCCEEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDS-QRLVFK---R--QQLEDDRNLASYKIVNESIVNLT 282 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~---g--~~L~d~~tL~~y~I~~~~~l~l~ 282 (286)
+.+.|..++|....+.+++++|+.+|-..|+++.|+.... .-|.|. | .-|+..+++.+.......++++.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 7788999999999999999999999999999999987644 445542 2 34677777776643333455543
No 272
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=73.36 E-value=26 Score=29.73 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=53.6
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCcc-EEEEE---CCE--EeeccccccccccCCCCeEEEEee
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHE-YDIYY---GGK--LIESYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~-q~L~~---~g~--~L~D~~tL~~~~I~~~s~i~l~~~ 134 (286)
+.+.|..++ | ++.+.++++.|+.++=..|.++.|+.... .-|.+ +|. -|+..+++.+.++..+....+.++
T Consensus 2 i~~~V~l~d-~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMD-A-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETT-E-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECC-c-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 567788888 7 78899999999999999999999987543 56655 233 267778888876666666655544
No 273
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=73.06 E-value=16 Score=24.16 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=42.0
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCC--ccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPV--HEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~--~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
|.|.|+.+..=+.-.+++ ...||.++.+.+....++.. ..-.+.-+|+...+ .+.-+++|+.+.+.....|
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCC
Confidence 456666554111123566 66899999999886543322 23444556665432 2556888998887654443
No 274
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=71.98 E-value=8.8 Score=34.06 Aligned_cols=52 Identities=10% Similarity=0.218 Sum_probs=40.5
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCe-Ec-CCCCccccCC
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQ-QL-EDDRNLASYK 272 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~-~L-~d~~tL~~y~ 272 (286)
......+.+.+..|+.++++.+++.++++++.|.|.+.+. .. +...+-..|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 4456778899999999999999999999999999999883 33 3333444443
No 275
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=71.85 E-value=13 Score=25.98 Aligned_cols=46 Identities=7% Similarity=-0.034 Sum_probs=35.9
Q ss_pred EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCcc-EEEEECC
Q 023198 64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHE-YDIYYGG 109 (286)
Q Consensus 64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~-q~L~~~g 109 (286)
+.||..-+|..+.+.++++-+..+|.+++++..+++..+ ..+.|-.
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 344544338899999999999999999999999988655 5666643
No 276
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=70.92 E-value=20 Score=25.87 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=51.2
Q ss_pred EEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE---ecCe--EcCCCCccccCCCCCCCEEEEEcCC
Q 023198 216 FVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV---FKRQ--QLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 216 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~---~~g~--~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
.|-..+...+++.++.+.|+.+++..++++.+...+.+.|+ ++|. .|+++..--.-.+.-+.-|++..+.
T Consensus 13 ~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 13 HVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp EEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred EEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 34445667888999999999999999999999887778885 4555 4455544444456667778877654
No 277
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=70.86 E-value=7.6 Score=26.01 Aligned_cols=52 Identities=8% Similarity=0.079 Sum_probs=36.3
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEe
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIR 209 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~ 209 (286)
++++ ...||.+|-+ ..+++++...+..||..+..+ ..+++.+++||.|.++.
T Consensus 9 ~~e~-~~~Tl~~LL~-----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 9 QREV-QSASVAALMT-----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILT 60 (73)
T ss_dssp EECC-CCSBHHHHHH-----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEEC
T ss_pred EEEc-CCCcHHHHHH-----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEc
Confidence 3455 5688988743 457788888888899877542 24456788899998853
No 278
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=69.44 E-value=24 Score=24.08 Aligned_cols=56 Identities=16% Similarity=0.063 Sum_probs=40.6
Q ss_pred eEEEeecCCcCcHHHHHHHHHHHhC-C-----CC-----CceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 223 RYIILEVAKFDTVRDVKDKLFREIG-Q-----AP-----DSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 223 ~~~~l~v~~~~tV~~lK~~I~~~~g-i-----~~-----~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
....++++...||++|.+.+..+.. + .. ....+.-+|+.... ++-+++|+.|.+..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P 84 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP 84 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC
Confidence 4567888888999999999988753 1 10 12466678887764 56688999998864
No 279
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=68.60 E-value=13 Score=25.93 Aligned_cols=56 Identities=9% Similarity=0.205 Sum_probs=40.5
Q ss_pred cceEEEeecCCc-CcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 221 NGRYIILEVAKF-DTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 221 ~g~~~~l~v~~~-~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+|+.+ ++... .||.+|.+.+ ++++....+..+|..+..+ ...+.-+++|+.|.++.
T Consensus 26 NGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 26 NGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp TTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred CCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 56654 45666 8999998765 6777777778888887532 34456689999998864
No 280
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=68.56 E-value=26 Score=30.86 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=44.6
Q ss_pred EEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCE-E-eeccccccccc
Q 023198 64 LYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGK-L-IESYITLDVLN 122 (286)
Q Consensus 64 i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~-~-L~D~~tL~~~~ 122 (286)
+.+..+..-....+.+.+..|+.++++.+++.++++++.|.+++.+. . ++.......|.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 313 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp EEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred EEEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 33444443677788899999999999999999999999999999883 3 34444555544
No 281
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=68.22 E-value=15 Score=23.73 Aligned_cols=53 Identities=8% Similarity=0.095 Sum_probs=35.6
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEEe
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQIIR 209 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~ 209 (286)
++++....||.+|.+.+ ++++....+..+|...... ...+..+++|+.|.++.
T Consensus 9 ~~~~~~~~tv~~ll~~l-----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL-----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EECCCTTCCHHHHHHHH-----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred EEEcCCCCcHHHHHHHc-----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 45667778999987665 4566666677788876432 12245678899888753
No 282
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=67.27 E-value=7.6 Score=26.41 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=36.0
Q ss_pred EEecC--CCccHHhHHHHHHHHhcCCC-CCCeEEEeCCeeecCCccccccccCCCceEEEE
Q 023198 151 KLEVR--RAHTVLDVKKMVESMRICIP-SEDCELFRGGEQLQNLKTLAYYDIKENEVLQII 208 (286)
Q Consensus 151 ~l~v~--~~~tV~~lK~~I~~~~~gip-~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~ 208 (286)
+.++. ...||.+|-+. .+++ +....+..||..+..+ ...++.+++|+.|.++
T Consensus 9 ~~e~~~~~~~Tl~~LL~~-----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLSA-----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFL 63 (78)
T ss_dssp EEECSSCSCEEHHHHHHH-----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEEC
T ss_pred EEEcCCCCCCcHHHHHHH-----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEE
Confidence 34555 67899988543 4667 7777788899887553 2445567889988874
No 283
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=66.86 E-value=14 Score=26.38 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=43.7
Q ss_pred eEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEec----CeEcC--------------CCCccccCCCCCCCEEEEEcC
Q 023198 223 RYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFK----RQQLE--------------DDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 223 ~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~----g~~L~--------------d~~tL~~y~I~~~~~l~l~~~ 284 (286)
....++++++.|..+|-+.++++-.+....=-|.+. |+.|. -+++|.+.|+.+|+.|++.+.
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD~ 84 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADV 84 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECT
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEECC
Confidence 345678999999999999999864443333334333 33332 247799999999999998764
No 284
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=65.22 E-value=14 Score=27.73 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=37.1
Q ss_pred CcCcHHHHHHHHHHHhCCCC-------CceEEEecCeEcC--CCCccccCCCCCCCEEEEEc
Q 023198 231 KFDTVRDVKDKLFREIGQAP-------DSQRLVFKRQQLE--DDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 231 ~~~tV~~lK~~I~~~~gi~~-------~~q~L~~~g~~L~--d~~tL~~y~I~~~~~l~l~~ 283 (286)
...|..+|-+.+..+.|... ..++|+|.-- .+ -+++|.+.|+++|+.|.+.+
T Consensus 18 ~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~D-fDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 18 NKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYD-FEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETT-BCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred cccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCC-ccccccCcHHHcCcCCCcEEEEEc
Confidence 45699998888988999753 1344444211 11 24799999999999998875
No 285
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=61.93 E-value=8.7 Score=30.75 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=53.9
Q ss_pred CCeEEecCcccccCCcccccCCCCCceeeeeCCceEEEEEeCCC------------CcEEEEEEcCCcc-----------
Q 023198 28 LPELFYAGQQLENGLTVIDYGIPNNSVIHNDSGVMKLYFKTPSN------------EKTFELKANRSDT----------- 84 (286)
Q Consensus 28 ~q~l~~~g~~L~d~~~l~~y~i~~~s~l~l~~~~~~i~Vk~~~~------------g~~~~l~v~~~~t----------- 84 (286)
..++-|+|.+|..-|....|+|+..|.+-. +|.|.|.+..+-. ..-+.+-|+.-|.
T Consensus 11 ~~~i~YDGsqi~slWA~~~fgi~gdSIV~F-rG~c~V~~e~mvDleDv~~~~~I~S~dmlhFIvEhFD~~dl~~~y~rQR 89 (190)
T 2ddz_A 11 ERRIDYDGSAIRSHWAYRNFGILGDSLVVF-RGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASSLQK 89 (190)
T ss_dssp SSCCCBCSGGGSTTHHHHHHCCCSSEEEEE-EEEEECCGGGCCBHHHHHTTCCCEEEEEEEEEEEECSCCCHHHHHHHHH
T ss_pred CCccCcChhhhhHHHHHHhcCCCCCeEEEE-ECcccccHHHcccHHHHhcCCcccCccceEEEEeeCCCccHHHHHHHHH
Confidence 356779999999999999999999998884 6666655422210 1222333433333
Q ss_pred --HHHHHHHHHhhhCCCCccE--EEEECCEEee
Q 023198 85 --IENIKFIIEVREGIPVHEY--DIYYGGKLIE 113 (286)
Q Consensus 85 --V~~lK~~I~~~~gip~~~q--~L~~~g~~L~ 113 (286)
|.-+|+.+++ .|+...+- -|+++|+.|.
T Consensus 90 Llv~i~kE~L~~-~g~~~~R~GDDLy~~~~KLS 121 (190)
T 2ddz_A 90 LLIARLVELLWN-YGIEASRRGDDIYVNGRKLS 121 (190)
T ss_dssp HHHHHHHHHHHT-TTCCEEEETTEEEETTEECE
T ss_pred HHHHHHHHHHHH-cCCeeeeccCeeeECCCEEE
Confidence 4445555663 48776553 6778877663
No 286
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=61.15 E-value=19 Score=23.96 Aligned_cols=54 Identities=9% Similarity=0.068 Sum_probs=38.1
Q ss_pred EEEeecCCcCcHHHHHHHHHHHhC-----CCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 224 YIILEVAKFDTVRDVKDKLFREIG-----QAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 224 ~~~l~v~~~~tV~~lK~~I~~~~g-----i~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
...++ ....||.+|.+.+..+.. ++.....+..+|+.... +.-+++|+.|.+..
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFP 76 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEEC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeC
Confidence 45566 667899999999875531 23334567778887753 55688999998875
No 287
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=60.56 E-value=22 Score=24.62 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=26.5
Q ss_pred cceEEEeecCCcCcHHHHHHHHHHHhCCC
Q 023198 221 NGRYIILEVAKFDTVRDVKDKLFREIGQA 249 (286)
Q Consensus 221 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~ 249 (286)
.+-.|.+.|+++.+..+|+.+|..+..+.
T Consensus 20 ~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 20 KDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp TTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 46789999999999999999999999883
No 288
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=60.07 E-value=54 Score=31.04 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=55.2
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCc-cEEEEEC---CE--EeeccccccccccCCCCeEEEEe
Q 023198 60 GVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVH-EYDIYYG---GK--LIESYITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 60 ~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~~---g~--~L~D~~tL~~~~I~~~s~i~l~~ 133 (286)
..+.+.|..++ | ++.+.++++.|+.+|=..|-...|++.. ..-|.|. |. -|+..+++.+.++..+....+.+
T Consensus 3 k~i~v~V~llD-g-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 3 KSMNVRVTTMD-A-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp CEEEEEEECSS-C-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred ceEEEEEEeCC-C-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 35677888888 7 7889999999999999999999998753 4677653 22 36777888887776666666554
Q ss_pred e
Q 023198 134 V 134 (286)
Q Consensus 134 ~ 134 (286)
+
T Consensus 81 R 81 (575)
T 2i1j_A 81 R 81 (575)
T ss_dssp E
T ss_pred E
Confidence 4
No 289
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=60.01 E-value=23 Score=22.62 Aligned_cols=56 Identities=13% Similarity=0.243 Sum_probs=39.6
Q ss_pred ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 220 LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 220 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
.+|+.+. + ...|+.+|.+.+ ++++....+..+|.....+ .-.+.-+++|+.|.++.
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 4677765 4 568999998766 5666666777788877532 33456789999998864
No 290
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=55.21 E-value=8.8 Score=37.29 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=36.8
Q ss_pred CCCCcchHHHHHHHHhhchhcCCCCCCCeEEecCcc-cccCCcccccC
Q 023198 2 KVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQ-LENGLTVIDYG 48 (286)
Q Consensus 2 ~v~~~dtv~~vK~~i~~~~~~~i~~~~q~l~~~g~~-L~d~~~l~~y~ 48 (286)
.+.+.+|+.+++..|.+. +|||++.|.+++.+.. ++..+..+.|-
T Consensus 327 ~i~~~~tl~~l~~~i~~~--T~i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 327 PVTENENLQNLKSWLQQD--TGIPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp ECCTTCCHHHHHHHHHTT--SCCCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred ecCCCccHHHHHHHHHHH--hCCCHHHHHHHhccCCCCCCCcchhhhe
Confidence 467899999999999999 9999999999987654 55565666654
No 291
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=54.79 E-value=27 Score=22.99 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=38.6
Q ss_pred EEEeecCCcCcHHHHHHHHHHHhCCCCCce--EEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 224 YIILEVAKFDTVRDVKDKLFREIGQAPDSQ--RLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 224 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q--~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
...+++....||.+|.+.+..+.. ..... .+..+|+.... +.-+++|+.|.+..
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIP 72 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEEC
Confidence 456777788899999999887742 01222 56778888764 35688999998864
No 292
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=54.71 E-value=55 Score=23.30 Aligned_cols=72 Identities=18% Similarity=0.108 Sum_probs=55.4
Q ss_pred eEEEEEeec---ceEEEeecCCcCcHHHHHHHHHHHhCCCC--CceEEEe---cCeEcCCCCccccCCCCCCCEEEEEcC
Q 023198 213 HSIFVKLLN---GRYIILEVAKFDTVRDVKDKLFREIGQAP--DSQRLVF---KRQQLEDDRNLASYKIVNESIVNLTDL 284 (286)
Q Consensus 213 ~~i~vk~~~---g~~~~l~v~~~~tV~~lK~~I~~~~gi~~--~~q~L~~---~g~~L~d~~tL~~y~I~~~~~l~l~~~ 284 (286)
+.|+|...+ ....+++|....-|+.+-.++-++.+++. +..-|-. +-.+++-..||..|||+.++.++...+
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 567777754 36788999999999999999998888765 3444433 234788899999999999998887653
No 293
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=52.59 E-value=21 Score=23.78 Aligned_cols=59 Identities=7% Similarity=0.070 Sum_probs=40.9
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccc
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~ 138 (286)
|+.+. + ...||.+|-+. .|+++..--+..+|..+.-+ ..+++-+++|+.+.++-...||
T Consensus 7 G~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 7 GEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCC
T ss_pred CEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCC
Confidence 67554 4 56899998764 68888877788888876432 3345678899999877554444
No 294
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=52.08 E-value=20 Score=25.64 Aligned_cols=71 Identities=25% Similarity=0.264 Sum_probs=48.4
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCce-EEE------ecCeEcCCCCcc----ccCCCCCCCEEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQ-RLV------FKRQQLEDDRNL----ASYKIVNESIVNL 281 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q-~L~------~~g~~L~d~~tL----~~y~I~~~~~l~l 281 (286)
..+.|-..+|...++.|++.+|++++=+.++.+.++..+.- .|+ +--+.++|+..| +...+.....+..
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 34555567899999999999999999999999998765433 232 133667777654 3344445555554
Q ss_pred Ec
Q 023198 282 TD 283 (286)
Q Consensus 282 ~~ 283 (286)
..
T Consensus 90 ~k 91 (100)
T 1wgr_A 90 RK 91 (100)
T ss_dssp CS
T ss_pred ec
Confidence 43
No 295
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=50.62 E-value=25 Score=22.79 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=35.9
Q ss_pred eeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEEeCCeeecCCccccccccCCCceEEEE
Q 023198 139 QEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELFRGGEQLQNLKTLAYYDIKENEVLQII 208 (286)
Q Consensus 139 ~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~ 208 (286)
|.+.|..++| . .++....|+.++-+.+.. . ++........+|+..+-+ +.+..|+.|.++
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~-~--l~~~~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHS-D--LGDHCIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCS-H--HHHTEEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhh-c--cccceEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 4566666677 5 455678999998777632 1 222222334578765554 455567777764
No 296
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=49.19 E-value=61 Score=22.17 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=36.6
Q ss_pred EeecCCcCcHHHHHHHHHHHhC-----C-C-------CCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 226 ILEVAKFDTVRDVKDKLFREIG-----Q-A-------PDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 226 ~l~v~~~~tV~~lK~~I~~~~g-----i-~-------~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
.+++ ...||++|.+.+..+.. + . .....+.-+|....+..- .++-+++|+.|.++.
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILP 88 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEE
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEEC
Confidence 3554 45799999999988752 1 1 112456668877654222 255689999998864
No 297
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=48.82 E-value=24 Score=25.13 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=30.1
Q ss_pred ceEEEeecCCcCcHHHHHHHHHHHhCCCCCc-----eEEEecC
Q 023198 222 GRYIILEVAKFDTVRDVKDKLFREIGQAPDS-----QRLVFKR 259 (286)
Q Consensus 222 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-----q~L~~~g 259 (286)
+..+.+.|+++.+..+|..+|.++.+++... .+|.|..
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 5678999999999999999999999976322 3565644
No 298
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=47.81 E-value=62 Score=22.40 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=38.8
Q ss_pred EEEEEeecceE-EEeecC-CcCcHHHHHHHHHHHhCCCCCceEEE-e---cCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 214 SIFVKLLNGRY-IILEVA-KFDTVRDVKDKLFREIGQAPDSQRLV-F---KRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 214 ~i~vk~~~g~~-~~l~v~-~~~tV~~lK~~I~~~~gi~~~~q~L~-~---~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
.|+-|+.+.+. -++..+ .+-+|.+||..|..+.++-....-|. + .|.+..|+..+ |..+++|-+.+
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~~l----IprnssViVrR 79 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNAL----IPKNSSVIVRR 79 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTTCE----EETTCCEEEEE
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCceE----EecCCEEEEEe
Confidence 35556655543 344444 57799999999999998866555553 3 33344444332 33455554443
No 299
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=47.51 E-value=52 Score=20.89 Aligned_cols=57 Identities=5% Similarity=0.156 Sum_probs=38.8
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
|+.+. + ...||.+|.+.+ ++++..-.+..+|.....+ .-.+.-+++|+.+.++-...
T Consensus 6 g~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~ 62 (64)
T 2cu3_A 6 GEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQ 62 (64)
T ss_dssp TEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCC
T ss_pred CEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecc
Confidence 66654 4 668999998876 5666666777888876432 22345788999888764433
No 300
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=45.97 E-value=66 Score=21.71 Aligned_cols=60 Identities=8% Similarity=0.074 Sum_probs=40.0
Q ss_pred cEEEEEEcCCccHHHHHHHHHhhhC-CC----------CccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 73 KTFELKANRSDTIENIKFIIEVREG-IP----------VHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 73 ~~~~l~v~~~~tV~~lK~~I~~~~g-ip----------~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
+...+++....||.++.+.+..... +. ...-.+.-+|+.... ++-+.+|+.|.+.....|
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~G 88 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSG 88 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCC
Confidence 5667788778899999999877642 10 012355667776553 566888998887654443
No 301
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=45.70 E-value=71 Score=27.15 Aligned_cols=60 Identities=17% Similarity=0.035 Sum_probs=46.2
Q ss_pred ceeEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCC-eEEEe---CCe--eecCCccccccc
Q 023198 138 LQEIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSED-CELFR---GGE--QLQNLKTLAYYD 198 (286)
Q Consensus 138 ~~~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~-q~L~~---~g~--~L~d~~tL~~y~ 198 (286)
.+.+.|..++| ...+.+++..|+.+|=..|.+ +.|+.... ..|.+ +|. -|+.++.+.+..
T Consensus 17 ~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~-~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 17 QGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCE-HLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHH-HHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred eEEEEEEccCCCEEEEEECCCCCHHHHHHHHHH-HcCCCCcceeEEEEEcCCCccchhccchhHHHhc
Confidence 46788889999 999999999999999999999 99998655 34444 232 356667776653
No 302
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=45.15 E-value=72 Score=21.89 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=48.6
Q ss_pred eEEEecCCCccHHhHHHHHHHHhcCCC----CCCeEEEeCCee--ecCCccccccccCCCceEEEEe
Q 023198 149 TVKLEVRRAHTVLDVKKMVESMRICIP----SEDCELFRGGEQ--LQNLKTLAYYDIKENEVLQIIR 209 (286)
Q Consensus 149 ~~~l~v~~~~tV~~lK~~I~~~~~gip----~~~q~L~~~g~~--L~d~~tL~~y~i~~~~~i~l~~ 209 (286)
..-+.|+..+|+.++-+++..+..|.. +.-.+..++|.. ++.+-++++-++++-+.|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 556789999999999999988444532 224667788887 9999999999999999888754
No 303
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=44.23 E-value=28 Score=32.65 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=38.1
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCC--CceEEEe
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAP--DSQRLVF 257 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~--~~q~L~~ 257 (286)
+.+.|..++|....+.+++++|+.+|-..|+.+.|+.. +..-|.+
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 56778889999999999999999999999999999975 3445544
No 304
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=43.97 E-value=17 Score=24.65 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=29.6
Q ss_pred EEEeecCCcCcHHHHHHHHHHHhCCC-----CCceEEEecC
Q 023198 224 YIILEVAKFDTVRDVKDKLFREIGQA-----PDSQRLVFKR 259 (286)
Q Consensus 224 ~~~l~v~~~~tV~~lK~~I~~~~gi~-----~~~q~L~~~g 259 (286)
.+++.|+++.+..+|..+|.++.+.+ ....+|.|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 56788999999999999999999976 3556676644
No 305
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=43.86 E-value=76 Score=21.77 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=48.0
Q ss_pred EEeecCCcCcHHHHHHHHHHHh-C--CCC--CceEEEecCeE--cCCCCccccCCCCCCCEEEEEc
Q 023198 225 IILEVAKFDTVRDVKDKLFREI-G--QAP--DSQRLVFKRQQ--LEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 225 ~~l~v~~~~tV~~lK~~I~~~~-g--i~~--~~q~L~~~g~~--L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
..+.|+..+|+.++-++++... | +++ .-.+...+|.. +..+.|+++.||++=+.|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 3468999999999999998664 3 322 35677889988 9999999999999999998764
No 306
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=42.83 E-value=78 Score=21.59 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=37.0
Q ss_pred EEEEcCCccHHHHHHHHHhhhC-C-----C-------CccEEEEECCEEeeccccccccccCCCCeEEEEeeccc
Q 023198 76 ELKANRSDTIENIKFIIEVREG-I-----P-------VHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 76 ~l~v~~~~tV~~lK~~I~~~~g-i-----p-------~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~ 137 (286)
.++. ...||.++.+.+..+.. + . ...-.+.-+|+...+..- .++-+.+|+.|.+.....|
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~G 92 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAG 92 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTT
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCC
Confidence 4554 46799999999987642 1 0 012455667776543211 2467889999887755444
No 307
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=40.90 E-value=85 Score=21.50 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=46.8
Q ss_pred EEEEEcCCccHHHHHHHHHhhh-C--CC---CccEEEEECC--EEeeccccccccccCCCCeEEEEe
Q 023198 75 FELKANRSDTIENIKFIIEVRE-G--IP---VHEYDIYYGG--KLIESYITLDVLNINNEDTLQMIS 133 (286)
Q Consensus 75 ~~l~v~~~~tV~~lK~~I~~~~-g--ip---~~~q~L~~~g--~~L~D~~tL~~~~I~~~s~i~l~~ 133 (286)
.-+-|+..+|+.++-+++.... | ++ ..-.++.++| +.+..+.|+++.||..-..+.+.+
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 3466889999999999988754 4 32 2246778999 889999999999999888887654
No 308
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=40.87 E-value=66 Score=21.17 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=36.6
Q ss_pred cEEEEEEcCCccHHHHHHHHHhhhC-----CCCccEEEEECCEEeeccccccccccCCCCeEEEEeecc
Q 023198 73 KTFELKANRSDTIENIKFIIEVREG-----IPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPK 136 (286)
Q Consensus 73 ~~~~l~v~~~~tV~~lK~~I~~~~g-----ip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~ 136 (286)
....++ ....||.++.+.+..... ++...-.+..+|+.... +..+++|+.|.+.....
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~ 79 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVT 79 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCC
Confidence 345555 467799999998875421 22233456777876542 55788899888764333
No 309
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=39.30 E-value=2e+02 Score=25.26 Aligned_cols=173 Identities=16% Similarity=0.178 Sum_probs=98.0
Q ss_pred CCccHHHHHHHHHhhhCCCCccEEEEECCEEeeccccccccccCCCCeEEEEeecccceeEEeecCCC-eEEEecCC-Cc
Q 023198 81 RSDTIENIKFIIEVREGIPVHEYDIYYGGKLIESYITLDVLNINNEDTLQMISVPKELQEIFVQTPTS-TVKLEVRR-AH 158 (286)
Q Consensus 81 ~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~~~~~~~I~V~~~~g-~~~l~v~~-~~ 158 (286)
..-|+.++++.|+++.. .| -....+.+.+.-..+..|+|...-. .=.+.+.. ..
T Consensus 117 aG~T~~e~~~~I~~~L~----------------------~~--~~~P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~ 172 (359)
T 2j58_A 117 AGKTVSQVRQDITSRLT----------------------TY--IESPQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPL 172 (359)
T ss_dssp TTCCHHHHHHHHHHHHT----------------------TT--SSSCCEEEEEEECCSCEEEEEESBSSCEEEECCSSCC
T ss_pred CCCCHHHHHHHHHHHHH----------------------Hh--ccCCeEEEEEccCCceEEEEEceecCCeEEEeCCCCC
Confidence 47899999999998663 11 1123444444444456777753322 22344555 66
Q ss_pred cHHhHHHHHHHHhcCCCC----CCeEEEeCCeee--------cCCccccccccCCCceEEEEeeeeeEEEEEeecceEEE
Q 023198 159 TVLDVKKMVESMRICIPS----EDCELFRGGEQL--------QNLKTLAYYDIKENEVLQIIRHVKHSIFVKLLNGRYII 226 (286)
Q Consensus 159 tV~~lK~~I~~~~~gip~----~~q~L~~~g~~L--------~d~~tL~~y~i~~~~~i~l~~~~~~~i~vk~~~g~~~~ 226 (286)
||.+. |.. .-|+.. ..-.|..+|+.. .++..-.++.+++|++|++..+....++|...-++.-.
T Consensus 173 tl~~a---i~~-AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~~~~~~v~V~GeV~~pg~ 248 (359)
T 2j58_A 173 TVMDA---INA-AGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFIPSNDDLKVFVMGEVGKQST 248 (359)
T ss_dssp BHHHH---HHH-TTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEECBGGGCEEEEEESBSSCEE
T ss_pred cHHHH---HHH-cCCCCcccccceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEEeeceeeeEEeeccccCcce
Confidence 77765 444 445543 345666677632 23333456779999999997655555666544444456
Q ss_pred eecC-CcCcHHHHHHHHHHHhCCCC---Cce-EEEec----C------e--EcC--CCCc---cccCCCCCCCEEEEEcC
Q 023198 227 LEVA-KFDTVRDVKDKLFREIGQAP---DSQ-RLVFK----R------Q--QLE--DDRN---LASYKIVNESIVNLTDL 284 (286)
Q Consensus 227 l~v~-~~~tV~~lK~~I~~~~gi~~---~~q-~L~~~----g------~--~L~--d~~t---L~~y~I~~~~~l~l~~~ 284 (286)
+++. ...|+.++-.. .-|+.+ +.. .+++. | . .++ +... -..|.+++||+|++-..
T Consensus 249 ~~l~~~~~tl~eal~~---AGGi~~~~A~~~~I~v~R~~~~~~~~~~~~v~~ldl~~~~~~~~~~~f~Lq~gDvVyV~~~ 325 (359)
T 2j58_A 249 LKMDRSGMTLAEALGN---AEGISQEMSDATGIFVVRQLKGDRTGKIADIYQLNAQDASAMVLGTEFQLQPYDIVYVTTA 325 (359)
T ss_dssp EECBTTBCBHHHHHHH---TTCBCTTTEEEEEEEEEEECCSCTTCCCEEEEEECCSBGGGHHHHTTCBCCTTEEEEEEEC
T ss_pred EeecCCCCCHHHHHHh---CCCCCcccCCcceEEEEEecCCCCCccceEEEEecccCcccccccCCCccCCCCEEEEcCC
Confidence 7775 58888886543 345544 122 23332 2 1 111 1111 13567999999998653
No 310
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=38.95 E-value=79 Score=22.48 Aligned_cols=39 Identities=5% Similarity=-0.059 Sum_probs=32.3
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCC
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPV 100 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 100 (286)
..-|.|-..+ |..-++.|++.+|++++=+.+.++.+...
T Consensus 9 k~vvkvf~~D-gssksi~V~~~~Ta~dv~~~L~~K~~~~~ 47 (100)
T 1wgr_A 9 PHVVKVYSED-GACRSVEVAAGATARHVCEMLVQRAHALS 47 (100)
T ss_dssp CEEEEEEETT-SCEEEEEECTTCCHHHHHHHHHCSSSCCC
T ss_pred CEEEEEEecC-CCEEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 3456666777 99999999999999999999999887553
No 311
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=37.59 E-value=93 Score=21.00 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=35.7
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~ 256 (286)
+.+..++++--.++|.|..|+.+--.++.++.|+.++.-..+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 456678888888999999999999999999999988865553
No 312
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=37.01 E-value=72 Score=20.75 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=36.5
Q ss_pred cEEEEEEcCCccHHHHHHHHHhhhCCCCccE--EEEECCEEeeccccccccccCCCCeEEEEee
Q 023198 73 KTFELKANRSDTIENIKFIIEVREGIPVHEY--DIYYGGKLIESYITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 73 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q--~L~~~g~~L~D~~tL~~~~I~~~s~i~l~~~ 134 (286)
....+++....||.++.+.+..... ..... .+..+|+.... +..+++|+.+.+.-.
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPP 73 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEECC
Confidence 3456666677899999998876531 01222 56678876654 357888888876543
No 313
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=36.92 E-value=1e+02 Score=21.15 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=47.9
Q ss_pred eEEEecCCCccHHhHHHHHHHHhcC--CCC--C-CeEEEeCC--eeecCCccccccccCCCceEEEEe
Q 023198 149 TVKLEVRRAHTVLDVKKMVESMRIC--IPS--E-DCELFRGG--EQLQNLKTLAYYDIKENEVLQIIR 209 (286)
Q Consensus 149 ~~~l~v~~~~tV~~lK~~I~~~~~g--ip~--~-~q~L~~~g--~~L~d~~tL~~y~i~~~~~i~l~~ 209 (286)
..-+.|+..+|+.++-+++.-+..| +++ . -.+..++| ..+..+-|+++-+|.+-+.+.+.+
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 4557899999999999999873444 322 2 36677888 899999999999999998888754
No 314
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=36.84 E-value=1.2e+02 Score=21.95 Aligned_cols=77 Identities=10% Similarity=0.082 Sum_probs=45.9
Q ss_pred CceEEEEEeCC------CC-cEEEEEEcC---CccHHHHHHHHHhhhCCCCccEEEEEC-CE------Eeeccc---cc-
Q 023198 60 GVMKLYFKTPS------NE-KTFELKANR---SDTIENIKFIIEVREGIPVHEYDIYYG-GK------LIESYI---TL- 118 (286)
Q Consensus 60 ~~~~i~Vk~~~------~g-~~~~l~v~~---~~tV~~lK~~I~~~~gip~~~q~L~~~-g~------~L~D~~---tL- 118 (286)
..|.|.|+.+. ++ +.+.+++.. ..||.+|-+.+.+.. |..+.+|+.. |+ .+-|+. -+
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 34888888665 12 467788873 359999999988765 1112222111 11 121222 11
Q ss_pred -cccccCCCCeEEEEeecccc
Q 023198 119 -DVLNINNEDTLQMISVPKEL 138 (286)
Q Consensus 119 -~~~~I~~~s~i~l~~~~~~~ 138 (286)
-+|.+++|+.|.++....||
T Consensus 88 gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCC
Confidence 35789999998887776666
No 315
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=36.01 E-value=97 Score=20.74 Aligned_cols=55 Identities=9% Similarity=0.146 Sum_probs=36.3
Q ss_pred ecCCcCcHHHHHHHHHHHhC------C-----CCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 228 EVAKFDTVRDVKDKLFREIG------Q-----APDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 228 ~v~~~~tV~~lK~~I~~~~g------i-----~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
+++...||.+|.+.+..+.. + ......+..+|+..... .-.++-+++|+.|.++.
T Consensus 20 ~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 20 TFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEEC
T ss_pred EcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeC
Confidence 44556899999999987742 1 11345567788766422 12355689999998864
No 316
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=35.70 E-value=42 Score=32.38 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=38.9
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCC-CceEEEe
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAP-DSQRLVF 257 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~q~L~~ 257 (286)
+.+.|..++|....+.+++++|+.++-..|+.+.|+.. +..-|.+
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 77888999999999999999999999999999999755 4455655
No 317
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=34.31 E-value=1.1e+02 Score=20.71 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=33.8
Q ss_pred EEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEE
Q 023198 141 IFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELF 182 (286)
Q Consensus 141 I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~ 182 (286)
|.+-.+++ .-.++|.++.|+.+--.++-+ +.|+.++.+...
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk-~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALK-VRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHH-TTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHH-HcCCCHHHeEEE
Confidence 44556777 778999999999999999999 899988876655
No 318
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=33.95 E-value=1.2e+02 Score=21.00 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=35.1
Q ss_pred eEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEE
Q 023198 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELF 182 (286)
Q Consensus 140 ~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~ 182 (286)
.|.+-.+++ .-.++|.+..|+.+.-.+.-+ +.++.++.+...
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk-~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALK-VRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHH-TTTCCSSSEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHH-HcCCCHHHeEEE
Confidence 455667777 778999999999999999999 899998876665
No 319
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=33.92 E-value=93 Score=21.49 Aligned_cols=43 Identities=23% Similarity=0.183 Sum_probs=36.0
Q ss_pred EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE
Q 023198 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256 (286)
Q Consensus 214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~ 256 (286)
.+.+..++++--.++|.+..|+.+--.++.++.|+.++.-..+
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 3456667888888999999999999999999999998876554
No 320
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=33.47 E-value=64 Score=21.35 Aligned_cols=45 Identities=4% Similarity=0.017 Sum_probs=30.8
Q ss_pred CCCCcchHHHHHHHHhhchhcCCCCCCCeEEecCcccccCCcccccCCCCCceeee
Q 023198 2 KVKKTEKIEKLKLRIHAKVEEEILEDLPELFYAGQQLENGLTVIDYGIPNNSVIHN 57 (286)
Q Consensus 2 ~v~~~dtv~~vK~~i~~~~~~~i~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~l~l 57 (286)
++....||.++.+. .++|...-.+..+|+....+ +.+..|..|.+
T Consensus 26 ~~~~~~Tv~dLl~~------L~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i 70 (77)
T 1rws_A 26 EWREGMKVRDILRA------VGFNTESAIAKVNGKVVLED-----DEVKDGDFVEV 70 (77)
T ss_dssp CCCSSCCHHHHHHT------TTCSSCSSCEEETTEEECSS-----SCCCSSCCCBC
T ss_pred ECCCCCcHHHHHHH------hCCCCcCEEEEECCEECCCC-----CCcCCCCEEEE
Confidence 45567799988776 55666555566778777653 56777777766
No 321
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=33.09 E-value=1.1e+02 Score=22.46 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=46.3
Q ss_pred EEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCC------ceEEE---ecCe--EcCCCCccccCCCCCCCEEEEEcCC
Q 023198 217 VKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPD------SQRLV---FKRQ--QLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 217 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~------~q~L~---~~g~--~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
|-..+...+++.++.+.|+.+++..++++.+...+ .+.|+ ++|. .|+++..--.-.+.-+.-|++..+.
T Consensus 14 VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~kd 93 (120)
T 2dhz_A 14 VYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTRD 93 (120)
T ss_dssp EECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECTT
T ss_pred EEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 33445667778899999999999999999998664 67774 4554 4454433322234555667766553
No 322
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=31.75 E-value=83 Score=26.82 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=46.2
Q ss_pred EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe----c---CeEcCCCCcccc----CCCCCCCEEEEE
Q 023198 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF----K---RQQLEDDRNLAS----YKIVNESIVNLT 282 (286)
Q Consensus 214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~----~---g~~L~d~~tL~~----y~I~~~~~l~l~ 282 (286)
.+.|-..+|.+.++.|++.+|+++|=..++.+.+++...-.-+| . -+.|+|...+.+ .....+..+.+.
T Consensus 33 ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f~ 112 (281)
T 4gmv_A 33 VIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFM 112 (281)
T ss_dssp EEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEEE
Confidence 34444567889999999999999999999998887554433332 1 366777766543 334444555554
No 323
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=31.60 E-value=1.3e+02 Score=21.06 Aligned_cols=44 Identities=23% Similarity=0.127 Sum_probs=37.3
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~ 256 (286)
..+.+-.++++--.++|.+..|+.+--.++.++.|+.++.-..+
T Consensus 18 ~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 18 PIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred cEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 35666778888888999999999999999999999988865554
No 324
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=31.37 E-value=96 Score=22.38 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=25.8
Q ss_pred eEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhh
Q 023198 62 MKLYFKTPSNEKTFELKANRSDTIENIKFIIEVR 95 (286)
Q Consensus 62 ~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~ 95 (286)
+.|.+=.++ |-.+++++..+.|+.++|..+=++
T Consensus 20 v~v~~LlPn-Gi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 20 ILVECLLPN-GMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEEEEECTT-SCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEEEcCc-EEEEEEEeeccccHHHHHHHHHHH
Confidence 444555666 999999999999999999975543
No 325
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=30.56 E-value=40 Score=22.93 Aligned_cols=43 Identities=9% Similarity=0.100 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 238 VKDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 238 lK~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
=|+.+.++.++..+|... .+.+|--..+||.++|+.+.+.+.+
T Consensus 19 Ek~~lL~~y~i~~~qLPr-----I~~~DPvar~~G~k~GdVvkI~R~S 61 (78)
T 1hmj_A 19 EVEEILKRYNIKIQQLPK-----IYEDDPVIQEIGAKEGDVVRVIRKS 61 (78)
T ss_pred HHHHHHHHcCCCHHHCCe-----eeCcCHhhHHhCCCCCCEEEEEECC
Confidence 355677788888777544 4455666778899999999998764
No 326
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=30.20 E-value=1.2e+02 Score=22.62 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=34.6
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCCeEEE-eCCeee-cCCccccc
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELF-RGGEQL-QNLKTLAY 196 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~-~~g~~L-~d~~tL~~ 196 (286)
.+-|..+.||.++...|.. +.++++++-.++ |-+..+ ..+.++++
T Consensus 56 KflVp~~~tv~qf~~~iRk-rL~l~~~~alFl~~vn~~~p~~~~~m~~ 102 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRR-RLQLNANQAFFLLVNGHSMVSVSTPISE 102 (130)
T ss_dssp EEEEETTCBHHHHHHHHHH-HHTCCTTCCEEEEETTTEECCTTSBHHH
T ss_pred EEEcCCCCcHHHHHHHHHH-HhCCCCCceEEEEEECCccCCccchHHH
Confidence 4568899999999999999 999999886666 644444 55556665
No 327
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=30.03 E-value=70 Score=23.06 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=33.3
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEe-CCeeecCCccccc
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELFR-GGEQLQNLKTLAY 196 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~-~g~~L~d~~tL~~ 196 (286)
.+-|..+.||.++...|.. +.++++++-.++| ++.....+.++++
T Consensus 47 KflVp~~~tv~~~~~~iRk-~l~l~~~~alfl~vn~~~p~~~~~m~~ 92 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRK-RIHLRPEDALFFFVNNTIPPTSATMGQ 92 (110)
T ss_dssp EEEEETTCBHHHHHHHHHH-HTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEEeCCCCcHHHHHHHHHH-HhcCCCCCcEEEEECCEecCccChHHH
Confidence 4567788999999999999 9999988754444 6654455666665
No 328
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=29.92 E-value=67 Score=22.73 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=39.9
Q ss_pred cEEEEEEcCCccHHHHHHHHHhhhCCCCc-----------cEEEEECCE-Eeec------cccccccccCCCCeEEEE
Q 023198 73 KTFELKANRSDTIENIKFIIEVREGIPVH-----------EYDIYYGGK-LIES------YITLDVLNINNEDTLQMI 132 (286)
Q Consensus 73 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~-----------~q~L~~~g~-~L~D------~~tL~~~~I~~~s~i~l~ 132 (286)
....++++++.|..++-+.+.+.-.+-.. ...|+..+- .|+. .++|.+.|+.+|..|.+.
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 35578899999999999988874332222 233443331 2322 467999999999988775
No 329
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.58 E-value=89 Score=21.83 Aligned_cols=49 Identities=8% Similarity=0.188 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHhCCCCCceEEEe--cCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 233 DTVRDVKDKLFREIGQAPDSQRLVF--KRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 233 ~tV~~lK~~I~~~~gi~~~~q~L~~--~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
.+.++|+.+.+++++++...-+|+. .|.+++|..=+.. +.++..+.++.
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~t--Lp~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTT--SCSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhh--CCCCCEEEEEc
Confidence 4789999999999999876666654 5777765522222 23444444443
No 330
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=28.55 E-value=1.5e+02 Score=20.73 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=33.7
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccE-EEEECCEE
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEY-DIYYGGKL 111 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q-~L~~~g~~ 111 (286)
..++.+.|++..|=-++|+.++..+++.+..- .+...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 36889999999999999999999999998764 45666663
No 331
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=27.83 E-value=1.9e+02 Score=21.50 Aligned_cols=52 Identities=15% Similarity=0.262 Sum_probs=35.5
Q ss_pred CccHHHHHHHHHhhhCCCCccEEEEE--CCEEe-----ec--cccccccccCCCCeEEEEee
Q 023198 82 SDTIENIKFIIEVREGIPVHEYDIYY--GGKLI-----ES--YITLDVLNINNEDTLQMISV 134 (286)
Q Consensus 82 ~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L-----~D--~~tL~~~~I~~~s~i~l~~~ 134 (286)
..|..+|=+.++.+.|.+. ...+.- ..+.| +| +++|++.|+.+|+.+.+.-.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 3588887777888888763 444432 23333 23 57999999999998887643
No 332
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=27.64 E-value=1.5e+02 Score=21.67 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=34.0
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEe-CCeeecCCccccc
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELFR-GGEQLQNLKTLAY 196 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~-~g~~L~d~~tL~~ 196 (286)
.+-|..+.||.++...|.. +.++++++-.++| ++.....+.++++
T Consensus 50 KflVp~~~tv~qf~~~iRk-rl~l~~~~alFl~Vn~~~p~~~~~m~~ 95 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRK-RIMLPPEKAIFIFVNDTLPPTAALMSA 95 (118)
T ss_dssp EEEEETTSBHHHHHHHHHH-HTTCCTTCCEEEEBTTBCCCTTSBHHH
T ss_pred eEEcCCCCCHHHHHHHHHH-HhCcCCCccEEEEECCccCCccchHHH
Confidence 4558899999999999999 9999987755554 6654455566665
No 333
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=27.59 E-value=1.7e+02 Score=27.26 Aligned_cols=48 Identities=6% Similarity=0.002 Sum_probs=41.1
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCC--ccEEEEE
Q 023198 59 SGVMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPV--HEYDIYY 107 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~--~~q~L~~ 107 (286)
+..+.+.|..++ |....+.++++.|+.++-..|..+.|+.. +...|++
T Consensus 214 ~~~~~~~V~l~d-g~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 214 RQEMTSTVYCHG-GGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp TCCEEEEEEETT-SCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCCcceEEEecC-CCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 456788898998 99999999999999999999999999974 4566655
No 334
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=26.97 E-value=1.9e+02 Score=21.22 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=50.5
Q ss_pred eEEEeecCCcCcHHHHHHHHHHH--------hCCCCCceEEEecCeEcC--CCCccccCCCCCCCEEEEEcCC
Q 023198 223 RYIILEVAKFDTVRDVKDKLFRE--------IGQAPDSQRLVFKRQQLE--DDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 223 ~~~~l~v~~~~tV~~lK~~I~~~--------~gi~~~~q~L~~~g~~L~--d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
.-+.+.+++..+.++|-+++-.- ..|..+.-.+.-+|+... .+++|.+-|+.--|.|.+.-.|
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TPg 110 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTPG 110 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECTT
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCCC
Confidence 34678899999999988877533 246667778899999885 6689999999999999887655
No 335
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=26.81 E-value=1.5e+02 Score=21.09 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHHhCCCCC--ceEEE--ecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 233 DTVRDVKDKLFREIGQAPD--SQRLV--FKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 233 ~tV~~lK~~I~~~~gi~~~--~q~L~--~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
.+.++|+.+.+.+++++.. .-+|+ -.|.+++|..=+.. +.++..+.++..|
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~t--Lp~nT~lmvL~~g 91 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLC--LPSNTKFVALACN 91 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSS--SCSCCEEEEECSS
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhc--CCCCCEEEEEcCC
Confidence 4689999999999999763 34554 46888876532222 3456666655443
No 336
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=26.63 E-value=88 Score=22.59 Aligned_cols=70 Identities=23% Similarity=0.352 Sum_probs=44.3
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhC--------CCCCceEEEe-----cCeEcC-CCCccccCCCCCCCE
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIG--------QAPDSQRLVF-----KRQQLE-DDRNLASYKIVNESI 278 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g--------i~~~~q~L~~-----~g~~L~-d~~tL~~y~I~~~~~ 278 (286)
+.+.+=.++|-.+.++++.+.|+.++|..+-+.-. -.++.+.+.. .-.++. +.+.|.+...- -..
T Consensus 20 v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~pi 98 (108)
T 2v1y_A 20 ILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPF 98 (108)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSE
T ss_pred EEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceE
Confidence 34444567999999999999999999999866522 3445555543 112464 44677776543 234
Q ss_pred EEEEc
Q 023198 279 VNLTD 283 (286)
Q Consensus 279 l~l~~ 283 (286)
+.++-
T Consensus 99 Lklve 103 (108)
T 2v1y_A 99 LKVIE 103 (108)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 44443
No 337
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=26.35 E-value=1.6e+02 Score=20.67 Aligned_cols=42 Identities=21% Similarity=0.174 Sum_probs=35.3
Q ss_pred eEEeecCCC-eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEE
Q 023198 140 EIFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELF 182 (286)
Q Consensus 140 ~I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~ 182 (286)
.|.+-.+++ .-.++|.++.|+.+.-.++-+ +.|+.++.+...
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk-~R~L~pe~C~Vy 61 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALM-MRGLIPECCAVY 61 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHH-HHTCCGGGEEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHH-HcCCCHHHcEEE
Confidence 566667888 778999999999999999988 899988876655
No 338
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=25.50 E-value=1.9e+02 Score=20.70 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=41.9
Q ss_pred eEEEecCCCccHHhHHHHHHHHhcCCCCCCeEEE---eCCee--ecCCccccccccCCCceEEEEee
Q 023198 149 TVKLEVRRAHTVLDVKKMVESMRICIPSEDCELF---RGGEQ--LQNLKTLAYYDIKENEVLQIIRH 210 (286)
Q Consensus 149 ~~~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~---~~g~~--L~d~~tL~~y~i~~~~~i~l~~~ 210 (286)
.+++.++.+.|+.+++..+.+ +.+...+.+.|+ ++|.+ |+++..--.=.+.-+..|++..+
T Consensus 21 y~tvr~~v~~sa~eIl~~va~-kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 21 YVSVKAKVSSIAQEILKVVAE-KIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EEEECCCTTCBSHHHHHHHHH-HHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred eEEEEEeccchHHHHHHHHHH-HhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 667888889999999999999 998877778777 46663 34443332223445556665544
No 339
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=25.12 E-value=93 Score=21.25 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=25.7
Q ss_pred EEeecCCC-eEEEecCCCccHHhHHHHHHHHhc
Q 023198 141 IFVQTPTS-TVKLEVRRAHTVLDVKKMVESMRI 172 (286)
Q Consensus 141 I~V~~~~g-~~~l~v~~~~tV~~lK~~I~~~~~ 172 (286)
+.+...+| +|.++|+.+.-++.-|.-|++|+.
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~ermkd 71 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERMKD 71 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHHHH
Confidence 34456778 999999999989888888888653
No 340
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=25.00 E-value=1.7e+02 Score=24.40 Aligned_cols=58 Identities=3% Similarity=-0.103 Sum_probs=37.3
Q ss_pred EEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCCCccEEEEEC-------CEEeecccccccc
Q 023198 63 KLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIPVHEYDIYYG-------GKLIESYITLDVL 121 (286)
Q Consensus 63 ~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~-------g~~L~D~~tL~~~ 121 (286)
-|.|-..+ |...++.|+++.|+++|=..+..+.+.+...-..++. -+.|+|+..+-+-
T Consensus 10 ivkv~~~d-~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 10 DVKVFSED-GTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEEETT-SCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred EEEEEecC-CcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 45555677 8999999999999999998888777655333333332 2557777766554
No 341
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=24.73 E-value=29 Score=25.15 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=38.2
Q ss_pred eEEEEEeec------ceEEEeecCC----cCcHHHHHHHHHHHhCCCCCceEEE-ecC--e------EcCCCCcc-----
Q 023198 213 HSIFVKLLN------GRYIILEVAK----FDTVRDVKDKLFREIGQAPDSQRLV-FKR--Q------QLEDDRNL----- 268 (286)
Q Consensus 213 ~~i~vk~~~------g~~~~l~v~~----~~tV~~lK~~I~~~~gi~~~~q~L~-~~g--~------~L~d~~tL----- 268 (286)
|.+.|++.. |+...++++. ..||.+|-..+++.. +...-+|+ -+| . .|-+++..
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 445555543 3445666663 359999888887764 22222222 112 1 22233332
Q ss_pred ccCCCCCCCEEEEEc
Q 023198 269 ASYKIVNESIVNLTD 283 (286)
Q Consensus 269 ~~y~I~~~~~l~l~~ 283 (286)
.+|-+++||.|.++.
T Consensus 83 ldt~L~dgD~V~fis 97 (110)
T 2k9x_A 83 MDYVLNDGDTVEFIS 97 (110)
T ss_dssp SCCCCCSSCEEEEEE
T ss_pred cccCCCCcCEEEEeC
Confidence 468899999987753
No 342
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=24.66 E-value=1.3e+02 Score=21.36 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=30.9
Q ss_pred CceEEEEEeCCC------CcEEEEEEcCCccHHHHHHHHHhhhCCC
Q 023198 60 GVMKLYFKTPSN------EKTFELKANRSDTIENIKFIIEVREGIP 99 (286)
Q Consensus 60 ~~~~i~Vk~~~~------g~~~~l~v~~~~tV~~lK~~I~~~~gip 99 (286)
+.+.|.|...+. +..+.+-|.++-+..+|..+|.++.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 345666664421 4578999999999999999999998765
No 343
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=24.58 E-value=1.4e+02 Score=20.96 Aligned_cols=56 Identities=5% Similarity=-0.025 Sum_probs=38.9
Q ss_pred eEEEeecCCcCcHHHHHHHHHH--Hh-CCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEc
Q 023198 223 RYIILEVAKFDTVRDVKDKLFR--EI-GQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTD 283 (286)
Q Consensus 223 ~~~~l~v~~~~tV~~lK~~I~~--~~-gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~ 283 (286)
..+.+++....||.++-+...- +. .|..+...+-.+|+... .++-+++|+.|.+..
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 4567788999999998876643 21 34444566766777766 455688899988753
No 344
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=23.88 E-value=98 Score=22.71 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=34.7
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCCeEEE-eCCeeecCCccccc
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELF-RGGEQLQNLKTLAY 196 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~-~~g~~L~d~~tL~~ 196 (286)
.+-|..+.||.++...|.. +.++++++-.++ .++.....+.++++
T Consensus 51 KflVp~~~tv~qf~~~iRk-rl~l~~~~alFl~Vn~~~p~~~~~m~~ 96 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRK-RVQLEAESALFVYTNDTVLPSSAQMAD 96 (119)
T ss_dssp EEEEETTCBHHHHHHHHHH-HHTCCTTSCCEEEETTEECCTTSBHHH
T ss_pred eEEcCCCCCHHHHHHHHHH-HhCCCccceEEEEECCcCCCccchHHH
Confidence 3568889999999999999 999998875444 47765566666665
No 345
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=23.40 E-value=2.3e+02 Score=21.02 Aligned_cols=61 Identities=7% Similarity=0.045 Sum_probs=42.5
Q ss_pred CCceEEEEEeCCCCcE-------EEEEEcCCccHHHHHHHHHhhhCCCCccEEEE-ECCEEe-eccccccc
Q 023198 59 SGVMKLYFKTPSNEKT-------FELKANRSDTIENIKFIIEVREGIPVHEYDIY-YGGKLI-ESYITLDV 120 (286)
Q Consensus 59 ~~~~~i~Vk~~~~g~~-------~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~g~~L-~D~~tL~~ 120 (286)
+..+.|.|.... +.. -.+-|..+.||+++...|..+.++++++--.+ |.+..+ ..+.++++
T Consensus 33 P~kIPVIvEk~~-~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~ 102 (130)
T 2zjd_A 33 PTKIPVIIERYK-GEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISE 102 (130)
T ss_dssp TTEEEEEEEECT-TCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHH
T ss_pred CCceEEEEEEcC-CCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHH
Confidence 567888886554 222 23458889999999999999999998875555 666544 33445543
No 346
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=22.58 E-value=1.7e+02 Score=21.40 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=33.2
Q ss_pred eecCCcCcHHHHHHHHHHHhCCCCCc-eEEEecCeEcCCCCccc
Q 023198 227 LEVAKFDTVRDVKDKLFREIGQAPDS-QRLVFKRQQLEDDRNLA 269 (286)
Q Consensus 227 l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~g~~L~d~~tL~ 269 (286)
+-|+.+.||+++...|..+.++++++ .-|+-++....-+.++.
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~ 95 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMA 95 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHH
Confidence 45889999999999999999998877 44455777556666653
No 347
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=22.27 E-value=49 Score=23.76 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=43.7
Q ss_pred eEEEEEe-ecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEecCe--EcCCCCcccc
Q 023198 213 HSIFVKL-LNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFKRQ--QLEDDRNLAS 270 (286)
Q Consensus 213 ~~i~vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~g~--~L~d~~tL~~ 270 (286)
+.+.+.. +.++.+.+...++.++.++-.-|-.++|+..++..+...|. +|+-..++..
T Consensus 17 v~F~L~l~p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs~ 77 (104)
T 1wfy_A 17 ITFQLELVGLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSS 77 (104)
T ss_dssp EEEEEEESSSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGGG
T ss_pred EEEEEeccCCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchhh
Confidence 4444444 68899999999999999999999999999998877765554 4444444433
No 348
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=22.18 E-value=35 Score=23.13 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCCceEEEecCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 239 KDKLFREIGQAPDSQRLVFKRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 239 K~~I~~~~gi~~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
|+.+.++.++..+|... .+.+|--..+||.++|+.+.+.+.+
T Consensus 22 k~~lL~~y~i~~~qLP~-----I~~~DPvar~~G~k~GdVvkI~R~S 63 (77)
T 1eik_A 22 AKRVLKELDAHPEQLPK-----IKTTDPVAKAIGAKRGDIVKIIRKS 63 (77)
T ss_dssp HHHHHHHTTCCTTTSCC-----CBTTSHHHHGGGCCTTCEEEEEEEE
T ss_pred HHHHHHHcCCCHHHCCe-----eeCcCHhhHHhCCCCCCEEEEEECC
Confidence 55677888888877544 4455556778899999999987753
No 349
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=22.14 E-value=1.6e+02 Score=24.28 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=33.2
Q ss_pred eEEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCce
Q 023198 213 HSIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQ 253 (286)
Q Consensus 213 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q 253 (286)
+.+.|-..+|.+..+.|+++.|+.+|-..+..+.+++....
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTT
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCC
Confidence 33445556788889999999999999999999999876543
No 350
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=21.93 E-value=2.2e+02 Score=20.20 Aligned_cols=71 Identities=14% Similarity=0.293 Sum_probs=51.6
Q ss_pred eEEEEEeCCC--CcEEEEEEcCCccHHHHHHHHHhhhCCCCc--cEEEEECCE---EeeccccccccccCCCCeEEEE
Q 023198 62 MKLYFKTPSN--EKTFELKANRSDTIENIKFIIEVREGIPVH--EYDIYYGGK---LIESYITLDVLNINNEDTLQMI 132 (286)
Q Consensus 62 ~~i~Vk~~~~--g~~~~l~v~~~~tV~~lK~~I~~~~gip~~--~q~L~~~g~---~L~D~~tL~~~~I~~~s~i~l~ 132 (286)
..|+|...+- ....++.|..+.-|+-+-.++-++..++.+ .--|-..-+ .|.-..||..|||+.++.++..
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeecc
Confidence 4567776441 256888898889999999998887776643 334433322 4688999999999999987764
No 351
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.62 E-value=39 Score=19.46 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=11.3
Q ss_pred cchHHHHHHHHhhc
Q 023198 6 TEKIEKLKLRIHAK 19 (286)
Q Consensus 6 ~dtv~~vK~~i~~~ 19 (286)
++||.++|..||+.
T Consensus 2 sntvkelknyiqel 15 (46)
T 3he4_B 2 SNTVKELKNYIQEL 15 (46)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 67899999999876
No 352
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=21.22 E-value=2.1e+02 Score=19.70 Aligned_cols=73 Identities=8% Similarity=-0.022 Sum_probs=41.3
Q ss_pred eEEEEEeCC-------CCcEEEEEEc--CCccHHHHHHHHHhhhCCC-Ccc------------EEEEECCEEeeccccc-
Q 023198 62 MKLYFKTPS-------NEKTFELKAN--RSDTIENIKFIIEVREGIP-VHE------------YDIYYGGKLIESYITL- 118 (286)
Q Consensus 62 ~~i~Vk~~~-------~g~~~~l~v~--~~~tV~~lK~~I~~~~gip-~~~------------q~L~~~g~~L~D~~tL- 118 (286)
|.|.|+.+. +.+...+++. ...||++|.+.+.++..-. +.- -.+.-++..-+ .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~~ 78 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LEG 78 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GGT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---ccC
Confidence 456666432 1356677776 6789999999998765211 100 11233333211 11
Q ss_pred -cccccCCCCeEEEEeeccc
Q 023198 119 -DVLNINNEDTLQMISVPKE 137 (286)
Q Consensus 119 -~~~~I~~~s~i~l~~~~~~ 137 (286)
.++.+++|+.|.+.....|
T Consensus 79 ~~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 79 EKDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp GGGCBCCTTCEEEEEECTTC
T ss_pred CCCcCcCCCCEEEEECCCCC
Confidence 3567889998877654444
No 353
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=21.20 E-value=2e+02 Score=19.93 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=33.9
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccE-EEEECCEEe
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEY-DIYYGGKLI 112 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q-~L~~~g~~L 112 (286)
..++.+.|++..|=-++|+.++..+++.+..- .+...|+.=
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~k 62 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKK 62 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCcee
Confidence 36889999999999999999999999998764 456677643
No 354
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=20.70 E-value=1.1e+02 Score=22.65 Aligned_cols=45 Identities=22% Similarity=0.164 Sum_probs=0.0
Q ss_pred EEecCCCccHHhHHHHHHHHhcCCCCCCeEEEe-CCeeecCCccccc
Q 023198 151 KLEVRRAHTVLDVKKMVESMRICIPSEDCELFR-GGEQLQNLKTLAY 196 (286)
Q Consensus 151 ~l~v~~~~tV~~lK~~I~~~~~gip~~~q~L~~-~g~~L~d~~tL~~ 196 (286)
.+-|+.+.||.++...|.+ +..+++++-.++| ++.....+.++++
T Consensus 56 KflVp~~~tv~qf~~~IRk-rl~L~~~~alFl~Vnn~lPs~s~~m~~ 101 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRK-RIHLRPEDALFFFVNNVIPPTSATMGS 101 (125)
T ss_dssp EEEEETTSBHHHHHHHHHH-HTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEEcCCCCEeeeehhhhHh-hcCCCccccEEEEECCccCCccchHHH
No 355
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=20.64 E-value=1.1e+02 Score=25.62 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=34.7
Q ss_pred EEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEEec-------CeEcCCCCcc
Q 023198 215 IFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLVFK-------RQQLEDDRNL 268 (286)
Q Consensus 215 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~-------g~~L~d~~tL 268 (286)
|.|-..+|...++.|++..|+++|=..+..+.++..+.-.-+|. -+.|+|...+
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V 71 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELV 71 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhH
Confidence 44445678899999999999999999998887765544443442 4566666554
No 356
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=20.57 E-value=2.3e+02 Score=19.92 Aligned_cols=43 Identities=23% Similarity=0.138 Sum_probs=36.1
Q ss_pred EEEEEeecceEEEeecCCcCcHHHHHHHHHHHhCCCCCceEEE
Q 023198 214 SIFVKLLNGRYIILEVAKFDTVRDVKDKLFREIGQAPDSQRLV 256 (286)
Q Consensus 214 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~ 256 (286)
.+.+-.++++--.++|.+..|+.+--.++.++.|+.++.-..+
T Consensus 15 ~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 57 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 57 (96)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEE
Confidence 4556678888888999999999999999999999988765544
No 357
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=20.41 E-value=1.3e+02 Score=20.70 Aligned_cols=33 Identities=6% Similarity=0.202 Sum_probs=28.9
Q ss_pred CcEEEEEEcCCccHHHHHHHHHhhhCCCCccEE
Q 023198 72 EKTFELKANRSDTIENIKFIIEVREGIPVHEYD 104 (286)
Q Consensus 72 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~ 104 (286)
..++++.|++..|=-++|+.++..+|+.+..-+
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VN 54 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVN 54 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEE
Confidence 467899999999999999999999999986543
No 358
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=20.40 E-value=1.8e+02 Score=19.78 Aligned_cols=61 Identities=8% Similarity=0.052 Sum_probs=48.8
Q ss_pred EEeecCCcCcHHHHHHHHHHHhCCCCCceEEEe-cCeEcCCCCccccCCCCCCCEEEEEcCC
Q 023198 225 IILEVAKFDTVRDVKDKLFREIGQAPDSQRLVF-KRQQLEDDRNLASYKIVNESIVNLTDLG 285 (286)
Q Consensus 225 ~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-~g~~L~d~~tL~~y~I~~~~~l~l~~~~ 285 (286)
..+.|........+-+-.++.+++|+..--++- .|.-+....|-...-++-|+.|.|..|+
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRD 87 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRD 87 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccc
Confidence 356788888888888899999999998776654 6666777777777777889999998875
No 359
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=20.09 E-value=2.2e+02 Score=19.54 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCccHHHHHHHHHhhhCCC
Q 023198 61 VMKLYFKTPSNEKTFELKANRSDTIENIKFIIEVREGIP 99 (286)
Q Consensus 61 ~~~i~Vk~~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip 99 (286)
.|.|.| .-++-.|.+.|.++-+..+|+.+|.++..+.
T Consensus 12 ~~KVK~--yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 12 TTKIKF--YYKDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp CEEEEE--CBTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred ceEEEE--EecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 444444 3336889999999999999999999998883
Done!