BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023199
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 10/54 (18%)
Query: 34 WIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
W HL+++E+LL H G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 111 WGHLEIVEVLLKH------GADVNAQDKFGKTAFDISI----DIGNEDLAEILQ 154
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
Length = 344
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 18 QVSYDLSSDYKEQLKTWIH--LQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPS 75
++S D Y +LK W+ L EL++ ++A ASQ VN NHS F+L +
Sbjct: 133 RISPDGEEGYPGELKVWVTYTLDGGELIVNYRAQASQATPVNLTNHS---YFNLAGQASP 189
Query: 76 EAGDREIEEILRSAGATGMRDDNQTSVDNLAVSSAETNPLR 116
D E+ + D VD + + E P++
Sbjct: 190 NINDHEVT----------IEADTYLPVDETLIPTGEVAPVQ 220
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 32.3 bits (72), Expect = 0.27, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 10/55 (18%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG 90
HL+++E+LL G +VNA + G TAFD+ + + G+ ++ EIL+ A
Sbjct: 47 HLEIVEVLL------KAGADVNAQDKFGKTAFDISI----DNGNEDLAEILQKAA 91
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 11/59 (18%)
Query: 30 QLKTWI-HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
L W HL+++E+LL H G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 85 HLAAWADHLEIVEVLLKH------GADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 133
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 10/54 (18%)
Query: 34 WIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
W +L+++E+LL H G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 123 WGYLEIVEVLLKH------GADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 166
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 34 WIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
W HL+++E+LL G +VNA++ G+T L ++ G EI E+L GA
Sbjct: 90 WGHLEIVEVLL------KNGADVNAMDSDGMTPLHL----AAKWGYLEIVEVLLKHGA 137
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
HL+++E+LL G +VNA++H+G+T L + G EI E+L GA
Sbjct: 59 HLEIVEVLL------KNGADVNAVDHAGMTPLRLAALF----GHLEIVEVLLKNGA 104
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 125 HLEIVEVLL------KNGADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 166
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 10/54 (18%)
Query: 34 WIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
+ HL+++E+LL H G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 123 YGHLEIVEVLLKH------GADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 166
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
HL+++E+LL H G +VNA ++ G T L ++ G EI E+L GA
Sbjct: 92 HLEIVEVLLKH------GADVNAYDNDGHTPLHL----AAKYGHLEIVEVLLKHGA 137
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 10/54 (18%)
Query: 34 WIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
+ HL+++E+LL H G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 90 YGHLEIVEVLLKH------GADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 133
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 30.8 bits (68), Expect = 0.80, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+V++LLL G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 51 HLEVVKLLL------EAGADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 92
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL H G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 92 HLEIVEVLLKH------GADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 133
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 20/85 (23%)
Query: 7 IDITARKENTCQVSYDLSSDYKEQLKTWIHLQVIELLLGHQANASQGLEVNAINHSGVTA 66
++ RK NT L++DY HL+++E+LL H G +VNA ++ G T
Sbjct: 40 VNANDRKGNT---PLHLAADYD-------HLEIVEVLLKH------GADVNAHDNDGSTP 83
Query: 67 FDLLLISPSEAGDREIEEILRSAGA 91
L + G EI E+L GA
Sbjct: 84 LHLAALF----GHLEIVEVLLKHGA 104
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL H G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 125 HLEIVEVLLKH------GADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 166
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL H G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 125 HLEIVEVLLKH------GADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 166
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL H G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 92 HLEIVEVLLKH------GADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 133
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 10/54 (18%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA 89
HL+++E+LL G +VNA + G T FDL + + G+ +I E+L+ A
Sbjct: 113 HLEIVEVLL------KAGADVNAQDKFGKTPFDLAI----DNGNEDIAEVLQKA 156
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 34 WIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA-T 92
W HL+++E+LL G +VNA + G T L + G EI E+L GA
Sbjct: 57 WGHLEIVEVLL------KNGADVNAYDTLGSTPLHL----AAHFGHLEIVEVLLKNGADV 106
Query: 93 GMRDDNQTSVDNLAVS 108
+DDN + +LA +
Sbjct: 107 NAKDDNGITPLHLAAN 122
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL G +VNA + G TAFD+ + G+ ++ EIL+
Sbjct: 125 HLEIVEVLL------KYGADVNAQDKFGKTAFDISI----NNGNEDLAEILQ 166
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL H G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 125 HLEIVEVLLKH------GADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 166
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 33 TWIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
T+ HL+++E+LL H G +VNAI+ G T L + G EI E+L GA
Sbjct: 56 TYGHLEIVEVLLKH------GADVNAIDIMGSTPLHL----AALIGHLEIVEVLLKHGA 104
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
HL+++E+LL H G +VNA++ G T L I G EI E+L GA
Sbjct: 92 HLEIVEVLLKH------GADVNAVDTWGDTPLHLAAIM----GHLEIVEVLLKHGA 137
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL H G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 125 HLEIVEVLLKH------GADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 166
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 33 TWIHLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
T+ HL+++E+LL H G +VNAI+ G T L + G EI E+L GA
Sbjct: 56 TYGHLEIVEVLLKH------GADVNAIDIXGSTPLHL----AALIGHLEIVEVLLKHGA 104
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
HL+++E+LL H G +VNA++ G T L I G EI E+L GA
Sbjct: 92 HLEIVEVLLKH------GADVNAVDTWGDTPLHLAAIM----GHLEIVEVLLKHGA 137
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 16/91 (17%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95
HL+++E+LL H G +VNA + +G T L +S G EI E+L GA
Sbjct: 84 HLEIVEVLLKH------GADVNAYDRAGWTPLHLAALS----GQLEIVEVLLKHGA---- 129
Query: 96 DDNQTSVDNLAVSSAETNPLRTKNDMTEFFK 126
+ + D L +++ + + + + D+ E +
Sbjct: 130 --DVNAQDALGLTAFDISINQGQEDLAEILQ 158
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 125 HLEIVEVLL------KNGADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 166
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA 89
HL+++E+LL G +VNA + G T FDL + G +I E+L+ A
Sbjct: 113 HLEIVEVLL------KAGADVNAQDKFGKTPFDLAI----REGHEDIAEVLQKA 156
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL + G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 125 HLEIVEVLLKY------GADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 166
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 125 HLEIVEVLL------KAGADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 166
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL++ E+LL H G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 92 HLEIAEVLLKH------GADVNAQDKFGKTAFDISIGN----GNEDLAEILQ 133
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 125 HLEIVEVLL------KYGADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 166
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91
HL+++E+LL H G +VNA ++ G T L + G EI E+L GA
Sbjct: 92 HLEIVEVLLKH------GADVNAKDYEGFTPLHL----AAYDGHLEIVEVLLKYGA 137
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 165 QDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPLQFELQLC 224
+DN+ P + I+G +TI YM+F ++Q+++ LTTK PL L
Sbjct: 83 EDNA-PLRRGQTTSHLIFGVPSTINTANYMYFR------AMQLVSQLTTKEPLYHNLITI 135
Query: 225 F 225
F
Sbjct: 136 F 136
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL + G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 125 HLEIVEVLLKY------GADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 166
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 92 HLEIVEVLL------EYGADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 133
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 125 HLEIVEVLL------KYGADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 166
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 92 HLEIVEVLL------EYGADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 133
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 36 HLQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87
HL+++E+LL G +VNA + G TAFD+ + + G+ ++ EIL+
Sbjct: 92 HLEIVEVLL------EYGADVNAQDKFGKTAFDISI----DNGNEDLAEILQ 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,323,119
Number of Sequences: 62578
Number of extensions: 257336
Number of successful extensions: 444
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 52
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)