BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023199
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana
GN=At2g01680 PE=1 SV=1
Length = 532
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 87/222 (39%), Gaps = 39/222 (17%)
Query: 14 ENTCQVSYDLSSDYKEQLKTWIHL-------QVIELLLGHQANASQGLEVNAINHSGVTA 66
E Q Y + ++ + T +H+ Q+ LLL A +EVNAIN+ TA
Sbjct: 213 EEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTA-----IEVNAINNQKETA 267
Query: 67 FDLLLISPSEAGDREIEEILRSAGATGMR---------------DDNQTSVDNLAVSSAE 111
DL EI E L AGA R D + V + + + +
Sbjct: 268 MDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEK 327
Query: 112 TNPLRTKNDMTEFFKFKKGRDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPS 171
TN R E K R++ T +S+ VVA L A+ F N PG + + S
Sbjct: 328 TNR-RVSGIAKELRKLH--REAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGS--- 381
Query: 172 SKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTT 213
H+ +I G T FCL N+ +SL ++ + T
Sbjct: 382 ---HVGQANIAGRTGFRVFCL---LNATSLFISLAVVVVQIT 417
>sp|Q96C23|GALM_HUMAN Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1
Length = 342
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 18 QVSYDLSSDYKEQLKTWIH--LQVIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPS 75
++S D Y +LK W+ L EL++ ++A ASQ VN NHS F+L +
Sbjct: 131 RISPDGEEGYPGELKVWVTYTLDGGELIVNYRAQASQATPVNLTNHS---YFNLAGQASP 187
Query: 76 EAGDREIEEILRSAGATGMRDDNQTSVDNLAVSSAETNPLR 116
D E+ + D VD + + E P++
Sbjct: 188 NINDHEVT----------IEADTYLPVDETLIPTGEVAPVQ 218
>sp|Q8K157|GALM_MOUSE Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1
Length = 342
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 18 QVSYDLSSDYKEQLKTWIH--LQVIELLLGHQANASQGLEVNAINHS 62
+VS D Y +LK W+ L EL++ ++A ASQ VN NHS
Sbjct: 131 RVSPDGEEGYPGELKVWVTYTLDGGELVINYRAQASQTTPVNLTNHS 177
>sp|Q5R8U1|GALM_PONAB Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1
Length = 342
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 18 QVSYDLSSDYKEQLKTWIH--LQVIELLLGHQANASQGLEVNAINHS 62
++S D Y +LK W+ L EL++ ++A ASQ VN NHS
Sbjct: 131 RISPDGEEGYPGELKVWVTYTLDGGELVVNYRAQASQATPVNLTNHS 177
>sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1
Length = 342
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 18 QVSYDLSSDYKEQLKTWIH--LQVIELLLGHQANASQGLEVNAINHS 62
+VS D Y +LK W+ L EL++ ++A ASQ VN NHS
Sbjct: 131 RVSPDGEEGYPGELKVWVMYTLDGGELVVNYRAQASQTTPVNLTNHS 177
>sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1
Length = 342
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 18 QVSYDLSSDYKEQLKTWIH--LQVIELLLGHQANASQGLEVNAINHS 62
+VS D Y +LK W+ L EL++ ++A ASQ VN NHS
Sbjct: 131 RVSPDGEEGYPGELKVWVTYTLDGGELVVNYRAQASQTTPVNLTNHS 177
>sp|Q66HG4|GALM_RAT Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1
Length = 342
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 18 QVSYDLSSDYKEQLKTWIH--LQVIELLLGHQANASQGLEVNAINHS 62
+VS D Y +LK W+ L EL++ ++A ASQ VN NHS
Sbjct: 131 RVSPDGEEGYPGELKVWVTYTLDGGELVVNYRAQASQTTPVNLTNHS 177
>sp|B0K732|HISZ_THEP3 ATP phosphoribosyltransferase regulatory subunit
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=hisZ PE=3 SV=1
Length = 380
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 192 LYMFFNSLGFKLSL------QMINILTTKFPLQFELQLCFLAMNFTYD 233
LY FF+ G L+L Q+ I++TK F L+LC++A + YD
Sbjct: 58 LYRFFDKKGNILALRPDVTTQIARIVSTKLKGSFPLKLCYVANVYRYD 105
>sp|B0K622|HISZ_THEPX ATP phosphoribosyltransferase regulatory subunit
OS=Thermoanaerobacter sp. (strain X514) GN=hisZ PE=3
SV=1
Length = 380
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 192 LYMFFNSLGFKLSL------QMINILTTKFPLQFELQLCFLAMNFTYD 233
LY FF+ G L+L Q+ I++TK F L+LC++A + YD
Sbjct: 58 LYRFFDKKGNILALRPDVTTQIARIVSTKLKGSFPLKLCYVANVYRYD 105
>sp|Q7PCJ6|RPOC2_CHLRE DNA-directed RNA polymerase subunit beta'' OS=Chlamydomonas
reinhardtii GN=rpoC2 PE=2 SV=1
Length = 3120
Score = 31.6 bits (70), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 71 LISPSEAGDREIEEILRSAGATGMRDDNQTSVDNLAVSSAETNPLRTKNDMTEFFKFKKG 130
L+ P + +I LR T +R+ + T V+NL SS +R +ND F KK
Sbjct: 1214 LVCPKRKRNLQIVCTLRGEEQTSVRESSVTHVNNLICSSKYKRSIRLQNDSHLFTTTKKA 1273
Query: 131 R 131
+
Sbjct: 1274 K 1274
>sp|Q07527|TRM3_YEAST tRNA (guanosine(18)-2'-O)-methyltransferase OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRM3 PE=1 SV=1
Length = 1436
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 95 RDDNQTSVDNLAVSSAETNPLRTKNDMTE-FFKFKKGRDSPGETRSSLLVVAALV 148
RD N SV+N +S +T+PL+TK+ E + + TRS L+VV++LV
Sbjct: 1240 RDTNTESVNNANIS-CDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLV 1293
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,457,286
Number of Sequences: 539616
Number of extensions: 3583149
Number of successful extensions: 8151
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8146
Number of HSP's gapped (non-prelim): 17
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)