Query 023199
Match_columns 286
No_of_seqs 245 out of 1820
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:10:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13962 PGG: Domain of unknow 99.9 4.9E-27 1.1E-31 188.0 9.3 101 131-239 1-113 (113)
2 PF13857 Ank_5: Ankyrin repeat 99.2 2E-11 4.3E-16 85.4 4.0 45 20-70 11-56 (56)
3 PF13637 Ank_4: Ankyrin repeat 99.0 6.8E-10 1.5E-14 76.7 6.0 53 25-87 1-54 (54)
4 KOG4412 26S proteasome regulat 99.0 4.4E-10 9.5E-15 95.9 5.7 67 20-95 67-134 (226)
5 KOG4412 26S proteasome regulat 99.0 2.7E-10 5.9E-15 97.2 2.7 73 14-95 27-101 (226)
6 PF12796 Ank_2: Ankyrin repeat 98.9 6E-09 1.3E-13 78.5 6.7 60 25-94 26-86 (89)
7 PHA02736 Viral ankyrin protein 98.8 7.8E-09 1.7E-13 86.1 7.4 65 20-93 86-152 (154)
8 PHA02743 Viral ankyrin protein 98.8 2E-08 4.2E-13 85.3 7.5 65 20-94 52-122 (166)
9 PHA02730 ankyrin-like protein; 98.8 1.3E-08 2.9E-13 103.1 7.5 69 20-96 36-108 (672)
10 KOG0512 Fetal globin-inducing 98.7 1.5E-08 3.2E-13 86.2 5.2 67 20-96 92-159 (228)
11 PHA02946 ankyin-like protein; 98.7 4.9E-08 1.1E-12 95.5 7.5 68 20-95 67-135 (446)
12 PHA02741 hypothetical protein; 98.6 5.5E-08 1.2E-12 82.6 6.1 65 20-94 55-126 (169)
13 KOG4214 Myotrophin and similar 98.6 4.7E-08 1E-12 75.2 4.8 64 23-96 32-96 (117)
14 PHA02795 ankyrin-like protein; 98.6 1.1E-07 2.3E-12 92.4 7.5 69 20-94 216-289 (437)
15 PHA02741 hypothetical protein; 98.6 1.5E-07 3.2E-12 79.9 7.2 58 24-90 97-155 (169)
16 PHA02743 Viral ankyrin protein 98.6 1.6E-07 3.4E-12 79.7 6.8 19 53-71 47-65 (166)
17 PHA03095 ankyrin-like protein; 98.5 1.7E-07 3.6E-12 91.1 6.8 66 20-95 217-285 (471)
18 PHA02798 ankyrin-like protein; 98.5 1.5E-07 3.3E-12 92.7 6.5 65 20-94 253-318 (489)
19 PHA02989 ankyrin repeat protei 98.5 2.4E-07 5.1E-12 91.4 7.0 61 20-90 251-312 (494)
20 PHA02875 ankyrin repeat protei 98.5 2.8E-07 6.1E-12 88.4 7.3 64 21-94 131-195 (413)
21 PHA02791 ankyrin-like protein; 98.5 2.7E-07 5.8E-12 85.2 6.7 62 24-95 159-222 (284)
22 PHA02884 ankyrin repeat protei 98.5 3.2E-07 7E-12 85.3 7.3 64 22-95 67-132 (300)
23 KOG4177 Ankyrin [Cell wall/mem 98.5 2.2E-07 4.7E-12 98.3 6.2 67 20-96 535-602 (1143)
24 PHA02716 CPXV016; CPX019; EVM0 98.4 2.9E-07 6.2E-12 95.0 6.3 70 20-95 492-568 (764)
25 KOG0515 p53-interacting protei 98.4 2.6E-07 5.6E-12 89.7 5.5 65 20-94 578-643 (752)
26 PHA02791 ankyrin-like protein; 98.4 4.5E-07 9.8E-12 83.7 6.8 61 21-93 26-87 (284)
27 PHA03100 ankyrin repeat protei 98.4 4.8E-07 1E-11 88.2 6.9 65 20-94 245-310 (480)
28 PF00023 Ank: Ankyrin repeat H 98.4 2.8E-07 6.1E-12 57.2 3.3 32 24-61 1-33 (33)
29 PHA02878 ankyrin repeat protei 98.4 5.6E-07 1.2E-11 88.3 6.9 58 25-92 168-226 (477)
30 PHA02878 ankyrin repeat protei 98.4 6.5E-07 1.4E-11 87.8 7.1 67 20-95 196-263 (477)
31 PHA02736 Viral ankyrin protein 98.4 2.5E-07 5.4E-12 77.0 3.5 65 20-94 50-120 (154)
32 PHA02874 ankyrin repeat protei 98.4 8.6E-07 1.9E-11 85.9 7.4 65 20-94 119-184 (434)
33 PHA02859 ankyrin repeat protei 98.4 1.2E-06 2.7E-11 77.0 7.6 69 20-95 46-118 (209)
34 PHA03095 ankyrin-like protein; 98.4 9.5E-07 2E-11 85.8 7.5 67 20-94 78-146 (471)
35 PHA02859 ankyrin repeat protei 98.4 9.1E-07 2E-11 77.8 6.7 67 21-95 82-153 (209)
36 PLN03192 Voltage-dependent pot 98.4 7.4E-07 1.6E-11 93.3 7.2 62 20-91 553-615 (823)
37 PHA02875 ankyrin repeat protei 98.4 9.6E-07 2.1E-11 84.7 7.3 64 21-94 98-162 (413)
38 PTZ00322 6-phosphofructo-2-kin 98.3 8.6E-07 1.9E-11 90.8 7.3 60 20-89 110-170 (664)
39 KOG0510 Ankyrin repeat protein 98.3 5.4E-07 1.2E-11 91.4 5.5 73 13-95 329-405 (929)
40 PHA02874 ankyrin repeat protei 98.3 1.1E-06 2.4E-11 85.1 7.2 65 20-94 152-217 (434)
41 KOG0195 Integrin-linked kinase 98.3 5.2E-07 1.1E-11 82.2 4.1 64 21-94 63-127 (448)
42 PF13606 Ank_3: Ankyrin repeat 98.3 6.1E-07 1.3E-11 54.8 3.1 29 24-58 1-30 (30)
43 PHA02946 ankyin-like protein; 98.3 1.4E-06 2.9E-11 85.4 7.1 61 21-92 204-268 (446)
44 KOG0509 Ankyrin repeat and DHH 98.3 6.5E-07 1.4E-11 88.6 4.4 64 21-94 74-139 (600)
45 PHA02798 ankyrin-like protein; 98.3 1.6E-06 3.5E-11 85.4 6.9 68 20-94 104-175 (489)
46 PLN03192 Voltage-dependent pot 98.2 1.1E-06 2.5E-11 92.0 5.5 72 20-95 586-683 (823)
47 KOG0508 Ankyrin repeat protein 98.2 6.4E-07 1.4E-11 86.2 2.8 66 21-96 146-212 (615)
48 KOG0509 Ankyrin repeat and DHH 98.2 1.9E-06 4E-11 85.4 5.9 62 23-94 110-172 (600)
49 PHA02989 ankyrin repeat protei 98.2 2.6E-06 5.7E-11 84.0 7.1 68 20-95 103-175 (494)
50 PHA03100 ankyrin repeat protei 98.2 3.1E-06 6.7E-11 82.5 7.0 62 21-92 102-168 (480)
51 KOG0705 GTPase-activating prot 98.2 1.6E-06 3.4E-11 85.1 4.4 66 21-96 657-723 (749)
52 KOG0502 Integral membrane anky 98.2 1.1E-06 2.4E-11 77.4 3.0 84 8-95 143-254 (296)
53 PHA02730 ankyrin-like protein; 98.2 3.5E-06 7.5E-11 85.7 6.9 66 20-93 457-524 (672)
54 KOG0510 Ankyrin repeat protein 98.2 3.3E-06 7E-11 85.8 6.4 70 20-95 268-369 (929)
55 KOG0514 Ankyrin repeat protein 98.1 1.5E-06 3.3E-11 81.4 3.6 57 23-89 338-395 (452)
56 COG0666 Arp FOG: Ankyrin repea 98.1 6E-06 1.3E-10 70.1 6.8 66 20-95 101-175 (235)
57 PHA02884 ankyrin repeat protei 98.1 6.6E-06 1.4E-10 76.6 7.3 66 20-95 27-98 (300)
58 KOG0195 Integrin-linked kinase 98.1 4.6E-06 9.9E-11 76.2 5.7 71 12-93 22-93 (448)
59 KOG0514 Ankyrin repeat protein 98.1 2.7E-06 5.8E-11 79.7 4.3 61 20-89 368-429 (452)
60 PHA02716 CPXV016; CPX019; EVM0 98.1 6.5E-06 1.4E-10 85.1 7.5 66 22-95 174-242 (764)
61 PHA02876 ankyrin repeat protei 98.0 9.8E-06 2.1E-10 83.0 7.3 62 20-91 173-235 (682)
62 PHA02917 ankyrin-like protein; 98.0 1.1E-05 2.4E-10 82.7 7.1 66 20-94 447-513 (661)
63 PHA02917 ankyrin-like protein; 98.0 9.2E-06 2E-10 83.2 6.5 47 20-72 27-77 (661)
64 cd00204 ANK ankyrin repeats; 98.0 2E-05 4.2E-10 60.9 6.8 61 21-91 3-64 (126)
65 KOG0818 GTPase-activating prot 98.0 6.8E-06 1.5E-10 79.5 4.8 53 22-84 164-217 (669)
66 PHA02876 ankyrin repeat protei 98.0 1.3E-05 2.7E-10 82.2 7.0 65 20-94 336-402 (682)
67 KOG4177 Ankyrin [Cell wall/mem 98.0 5.5E-06 1.2E-10 88.0 4.4 64 20-93 568-632 (1143)
68 KOG0506 Glutaminase (contains 97.9 4.9E-06 1.1E-10 80.1 2.1 62 20-90 534-596 (622)
69 KOG0512 Fetal globin-inducing 97.9 1.2E-05 2.7E-10 68.6 4.3 61 20-89 125-186 (228)
70 PHA02792 ankyrin-like protein; 97.9 1.8E-05 3.8E-10 80.0 5.9 68 20-93 405-479 (631)
71 PHA02795 ankyrin-like protein; 97.9 2.4E-05 5.2E-10 76.1 6.1 63 23-95 186-249 (437)
72 cd00204 ANK ankyrin repeats; 97.9 6.1E-05 1.3E-09 58.0 7.4 63 20-92 35-98 (126)
73 KOG0505 Myosin phosphatase, re 97.8 2.1E-05 4.5E-10 76.8 4.7 66 20-95 68-134 (527)
74 KOG0522 Ankyrin repeat protein 97.8 3.1E-05 6.6E-10 75.6 5.9 47 20-72 50-97 (560)
75 PHA02792 ankyrin-like protein; 97.8 4.4E-05 9.6E-10 77.2 6.2 62 20-89 170-239 (631)
76 TIGR00870 trp transient-recept 97.7 4.8E-05 1E-09 78.8 6.2 63 22-94 125-202 (743)
77 KOG0507 CASK-interacting adapt 97.7 1.8E-05 3.9E-10 80.0 2.6 66 20-95 77-143 (854)
78 PF12796 Ank_2: Ankyrin repeat 97.7 0.00011 2.5E-09 54.9 6.2 53 29-95 1-54 (89)
79 COG0666 Arp FOG: Ankyrin repea 97.7 7E-05 1.5E-09 63.5 5.4 63 18-90 140-203 (235)
80 KOG0505 Myosin phosphatase, re 97.6 5.6E-05 1.2E-09 73.8 4.7 66 21-96 194-260 (527)
81 KOG0783 Uncharacterized conser 97.5 4.3E-05 9.4E-10 78.0 2.5 63 20-92 47-111 (1267)
82 PF13857 Ank_5: Ankyrin repeat 97.4 0.00014 3E-09 50.5 2.9 39 53-95 6-44 (56)
83 KOG1710 MYND Zn-finger and ank 97.3 0.00041 8.8E-09 63.6 6.0 66 20-95 40-107 (396)
84 KOG0508 Ankyrin repeat protein 97.2 0.00025 5.3E-09 68.8 3.7 62 25-96 117-179 (615)
85 PTZ00322 6-phosphofructo-2-kin 97.2 0.0008 1.7E-08 69.2 6.8 59 27-95 84-143 (664)
86 PF13637 Ank_4: Ankyrin repeat 97.1 0.00042 9.1E-09 47.4 2.9 25 20-44 29-54 (54)
87 PF13606 Ank_3: Ankyrin repeat 97.0 0.001 2.2E-08 40.4 3.6 29 62-94 1-29 (30)
88 TIGR00870 trp transient-recept 96.9 0.00051 1.1E-08 71.3 2.6 65 23-93 173-243 (743)
89 KOG4214 Myotrophin and similar 96.9 0.0015 3.2E-08 50.6 4.4 45 20-70 62-107 (117)
90 KOG3676 Ca2+-permeable cation 96.9 0.0011 2.4E-08 67.9 4.6 59 24-92 239-298 (782)
91 KOG3676 Ca2+-permeable cation 96.9 0.0015 3.2E-08 66.9 5.5 60 20-89 268-330 (782)
92 PF00023 Ank: Ankyrin repeat H 96.8 0.0017 3.8E-08 39.8 3.4 30 62-95 1-30 (33)
93 KOG0515 p53-interacting protei 96.6 0.0016 3.5E-08 64.0 3.5 61 20-88 611-673 (752)
94 KOG0507 CASK-interacting adapt 96.6 0.002 4.3E-08 65.6 4.2 60 20-89 110-170 (854)
95 KOG2384 Major histocompatibili 96.4 0.013 2.7E-07 51.0 7.0 62 20-90 7-69 (223)
96 KOG0502 Integral membrane anky 96.2 0.0039 8.4E-08 55.4 3.2 47 20-72 221-268 (296)
97 KOG0521 Putative GTPase activa 95.8 0.0079 1.7E-07 62.8 3.9 63 23-95 654-717 (785)
98 KOG0782 Predicted diacylglycer 95.8 0.0044 9.6E-08 61.4 1.7 68 20-95 894-962 (1004)
99 KOG0783 Uncharacterized conser 95.6 0.011 2.4E-07 61.1 3.8 47 20-72 80-128 (1267)
100 smart00248 ANK ankyrin repeats 95.6 0.017 3.6E-07 32.0 3.1 23 24-46 1-24 (30)
101 KOG0520 Uncharacterized conser 95.0 0.01 2.2E-07 62.4 1.4 66 20-95 603-669 (975)
102 KOG1710 MYND Zn-finger and ank 94.7 0.049 1.1E-06 50.3 4.7 50 17-72 71-121 (396)
103 KOG4369 RTK signaling protein 94.6 0.016 3.4E-07 61.7 1.6 65 20-94 819-884 (2131)
104 KOG4369 RTK signaling protein 94.1 0.023 5.1E-07 60.5 1.7 69 21-99 786-857 (2131)
105 KOG2505 Ankyrin repeat protein 94.1 0.061 1.3E-06 52.8 4.3 46 20-71 425-471 (591)
106 KOG0511 Ankyrin repeat protein 93.6 0.14 3E-06 48.9 5.6 61 26-96 37-98 (516)
107 KOG0818 GTPase-activating prot 93.5 0.14 3.1E-06 50.3 5.6 66 21-96 123-196 (669)
108 KOG0520 Uncharacterized conser 92.9 0.11 2.4E-06 54.8 4.3 65 20-88 636-701 (975)
109 KOG0521 Putative GTPase activa 91.5 0.095 2E-06 54.9 1.8 60 20-89 684-744 (785)
110 KOG0506 Glutaminase (contains 91.3 0.17 3.6E-06 49.6 3.0 66 21-96 502-569 (622)
111 KOG0522 Ankyrin repeat protein 90.9 0.3 6.6E-06 48.4 4.4 59 27-94 22-82 (560)
112 KOG0782 Predicted diacylglycer 90.0 0.45 9.7E-06 47.7 4.7 59 20-88 929-988 (1004)
113 smart00248 ANK ankyrin repeats 88.1 1 2.3E-05 24.1 3.7 27 62-92 1-27 (30)
114 KOG3609 Receptor-activated Ca2 81.8 1.1 2.3E-05 46.9 2.7 71 20-94 57-158 (822)
115 COG4298 Uncharacterized protei 78.6 6.8 0.00015 29.6 5.4 44 192-236 15-58 (95)
116 PF06128 Shigella_OspC: Shigel 66.4 11 0.00023 34.1 4.7 48 39-95 232-282 (284)
117 KOG4220 Muscarinic acetylcholi 66.4 20 0.00042 35.3 6.8 33 250-282 198-233 (503)
118 PLN00148 potassium transporter 65.8 54 0.0012 34.7 10.3 111 131-272 390-504 (785)
119 PLN00151 potassium transporter 65.5 35 0.00076 36.2 8.9 112 130-272 466-581 (852)
120 KOG0705 GTPase-activating prot 62.4 11 0.00025 38.1 4.5 59 29-95 628-689 (749)
121 PLN00149 potassium transporter 62.0 47 0.001 35.1 9.1 112 130-272 393-508 (779)
122 PLN00150 potassium ion transpo 59.8 52 0.0011 34.8 8.9 112 130-272 406-521 (779)
123 KOG0511 Ankyrin repeat protein 57.1 21 0.00046 34.5 5.2 28 20-47 64-92 (516)
124 KOG2384 Major histocompatibili 53.0 9.8 0.00021 33.4 2.0 37 53-93 2-39 (223)
125 TIGR00383 corA magnesium Mg(2+ 52.6 48 0.001 30.5 6.8 53 218-270 259-316 (318)
126 PRK10714 undecaprenyl phosphat 52.0 1.4E+02 0.003 27.9 9.8 28 212-239 226-253 (325)
127 PF11045 YbjM: Putative inner 49.5 1.4E+02 0.0031 24.3 9.0 57 216-272 60-119 (125)
128 PF05393 Hum_adeno_E3A: Human 47.8 45 0.00098 25.5 4.6 33 253-285 43-76 (94)
129 TIGR00794 kup potassium uptake 46.3 97 0.0021 32.4 8.3 111 130-272 360-475 (688)
130 PF01102 Glycophorin_A: Glycop 46.2 32 0.00069 27.9 3.9 17 259-275 81-97 (122)
131 KOG3609 Receptor-activated Ca2 45.1 17 0.00037 38.3 2.7 59 25-89 25-84 (822)
132 PF15099 PIRT: Phosphoinositid 44.7 8.1 0.00018 31.4 0.3 17 252-268 90-107 (129)
133 PF04246 RseC_MucC: Positive r 44.4 80 0.0017 25.4 6.2 8 177-184 54-61 (135)
134 PRK10847 hypothetical protein; 43.6 79 0.0017 27.8 6.5 13 188-200 151-163 (219)
135 PRK09546 zntB zinc transporter 42.9 73 0.0016 29.7 6.4 24 221-244 268-295 (324)
136 COG0586 DedA Uncharacterized m 42.6 1.2E+02 0.0025 26.6 7.3 17 187-203 136-152 (208)
137 COG0598 CorA Mg2+ and Co2+ tra 38.2 73 0.0016 29.8 5.6 52 219-270 264-320 (322)
138 COG1585 Membrane protein impli 37.7 2.3E+02 0.005 23.3 8.3 18 257-274 60-77 (140)
139 PF03176 MMPL: MMPL family; I 37.6 1.6E+02 0.0035 27.1 7.9 9 176-184 127-135 (333)
140 PRK11085 magnesium/nickel/coba 36.9 1.1E+02 0.0024 28.8 6.6 54 218-271 257-315 (316)
141 PF12805 FUSC-like: FUSC-like 36.7 2.7E+02 0.0058 25.3 9.1 22 247-268 76-97 (284)
142 KOG1962 B-cell receptor-associ 36.7 2.8E+02 0.0061 24.7 8.7 23 253-275 50-72 (216)
143 PF11346 DUF3149: Protein of u 35.8 1E+02 0.0022 20.2 4.3 31 242-272 9-40 (42)
144 PF02705 K_trans: K+ potassium 33.2 1.6E+02 0.0034 29.9 7.3 111 131-273 324-439 (534)
145 KOG4026 Uncharacterized conser 31.4 3.7E+02 0.008 23.8 14.5 74 138-211 9-98 (207)
146 COG2322 Predicted membrane pro 28.7 3.8E+02 0.0082 23.0 13.6 88 138-242 11-103 (177)
147 KOG4332 Predicted sugar transp 27.0 3.6E+02 0.0077 25.6 7.9 82 188-272 286-371 (454)
148 PF12823 DUF3817: Domain of un 26.9 2.2E+02 0.0047 21.7 5.6 71 198-268 8-91 (92)
149 PF15106 TMEM156: TMEM156 prot 26.8 1E+02 0.0022 27.4 4.2 26 243-268 175-200 (226)
150 TIGR00921 2A067 The (Largely A 26.5 3.4E+02 0.0074 28.0 8.8 8 176-183 177-184 (719)
151 KOG4591 Uncharacterized conser 25.9 44 0.00096 29.7 1.8 49 22-72 219-269 (280)
152 PF03669 UPF0139: Uncharacteri 25.7 3.3E+02 0.0071 21.3 7.9 35 195-234 34-68 (103)
153 PF04156 IncA: IncA protein; 25.4 2.4E+02 0.0053 23.8 6.4 12 195-206 6-17 (191)
154 COG5001 Predicted signal trans 25.3 46 0.001 32.8 2.0 23 263-285 198-224 (663)
155 COG5522 Predicted integral mem 25.3 4.9E+02 0.011 23.2 8.6 46 149-213 104-149 (236)
156 PRK15035 cytochrome bd-II oxid 25.1 7.3E+02 0.016 25.1 11.3 17 218-234 420-436 (514)
157 PF01036 Bac_rhodopsin: Bacter 24.5 3E+02 0.0065 24.0 6.9 59 206-266 85-147 (222)
158 PF09323 DUF1980: Domain of un 24.4 3.5E+02 0.0077 22.9 7.2 29 240-268 28-56 (182)
159 PF13194 DUF4010: Domain of un 24.4 4.9E+02 0.011 22.9 8.7 44 200-243 31-82 (211)
160 COG1033 Predicted exporters of 24.3 3.8E+02 0.0083 28.3 8.5 95 176-272 180-281 (727)
161 PF09835 DUF2062: Uncharacteri 24.1 93 0.002 25.5 3.4 21 257-277 134-154 (154)
162 PF12669 P12: Virus attachment 22.7 98 0.0021 21.6 2.7 11 261-271 16-26 (58)
163 TIGR02184 Myco_arth_vir_N Myco 22.7 57 0.0012 20.2 1.3 22 136-157 9-30 (33)
164 TIGR02762 TraL_TIGR type IV co 22.6 3.2E+02 0.0069 20.8 5.9 7 266-272 56-62 (95)
165 PF10943 DUF2632: Protein of u 22.1 3.9E+02 0.0084 22.6 6.6 17 219-235 70-86 (233)
166 TIGR01478 STEVOR variant surfa 22.0 74 0.0016 29.6 2.5 14 236-249 255-268 (295)
167 KOG4193 G protein-coupled rece 21.8 7.8E+02 0.017 25.5 10.1 46 227-272 525-577 (610)
168 PF04971 Lysis_S: Lysis protei 21.8 3.1E+02 0.0067 19.9 5.1 29 238-266 27-55 (68)
169 PF03419 Peptidase_U4: Sporula 21.8 6.2E+02 0.013 23.1 10.9 31 202-232 66-96 (293)
170 PRK06531 yajC preprotein trans 21.4 51 0.0011 26.3 1.2 13 265-277 19-31 (113)
171 PF05084 GRA6: Granule antigen 21.1 1.3E+02 0.0029 25.7 3.7 24 251-274 155-179 (215)
172 PF06679 DUF1180: Protein of u 21.1 1.3E+02 0.0029 25.5 3.7 11 260-270 111-121 (163)
173 TIGR03750 conj_TIGR03750 conju 21.0 4E+02 0.0087 21.2 6.2 10 265-274 69-78 (111)
174 PF11674 DUF3270: Protein of u 20.8 3.9E+02 0.0085 20.4 6.2 16 192-207 39-54 (90)
175 TIGR01478 STEVOR variant surfa 20.7 1.4E+02 0.0031 27.7 4.1 28 249-278 263-292 (295)
No 1
>PF13962 PGG: Domain of unknown function
Probab=99.94 E-value=4.9e-27 Score=187.98 Aligned_cols=101 Identities=33% Similarity=0.526 Sum_probs=86.7
Q ss_pred CCCccchhhhHHHHHHHHHhhhhhccccCCCCCcCCCCCCCCCCCCCCcccccCccccchhHHHHHHHHHHHHHHHHHHH
Q 023199 131 RDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINI 210 (286)
Q Consensus 131 ~~~~~~~~~~l~vvAtLiATvtf~a~~~pPGG~~~~~~~~~~~~~~~G~~vl~~~~~~~f~~F~~~nt~af~~S~~~i~~ 210 (286)
+||++|+||+++||||||||+||||++|||||+||+++ .+|+|++.+ ++..|++|+++|++||++|++++++
T Consensus 1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~-------~~G~~il~~-~~~~f~~F~~~nt~af~~S~~~i~~ 72 (113)
T PF13962_consen 1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD-------DAGTPILAK-KPSAFKAFLISNTIAFFSSLAAIFL 72 (113)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc-------CCCCchhcc-ccchhhhHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999862 479999984 3559999999999999999999999
Q ss_pred Hhhch--hh----------HHHHHHHHHHHHHHHHhHhhhh
Q 023199 211 LTTKF--PL----------QFELQLCFLAMNFTYDTAVISI 239 (286)
Q Consensus 211 l~~~~--p~----------~~~l~~~~~~m~~ay~~~~~~i 239 (286)
++++. +. ...+++++.+|+++|++|++++
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v 113 (113)
T PF13962_consen 73 LISGLDDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV 113 (113)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 88533 11 1247788899999999998764
No 2
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.18 E-value=2e-11 Score=85.40 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=29.8
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHH
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLL 70 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA 70 (286)
.+|..|+||||+|+++|+. ++++|+. .+++++++|++|+||+|+|
T Consensus 11 ~~d~~G~T~LH~A~~~g~~~~v~~Ll~------~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 11 AQDKYGNTPLHWAARYGHSEVVRLLLQ------NGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp ---TTS--HHHHHHHHT-HHHHHHHHH------CT--TT---TTS--HHHH-
T ss_pred CcCCCCCcHHHHHHHcCcHHHHHHHHH------CcCCCCCCcCCCCCHHHhC
Confidence 6899999999999999999 9999996 6999999999999999987
No 3
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.02 E-value=6.8e-10 Score=76.66 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=42.5
Q ss_pred CChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHH
Q 023199 25 SDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILR 87 (286)
Q Consensus 25 GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~ 87 (286)
|+||||.|++.|+. ++++|++ .++++|.+|.+|.||||+|+. .++.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~------~~~din~~d~~g~t~lh~A~~----~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLE------HGADINAQDEDGRTPLHYAAK----NGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHH------TTSGTT-B-TTS--HHHHHHH----TT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHH----ccCHHHHHHHC
Confidence 79999999999999 9999998 489999999999999999976 56788888874
No 4
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.4e-10 Score=95.92 Aligned_cols=67 Identities=24% Similarity=0.191 Sum_probs=47.1
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
.||+.|+||||+|+..|+. +|+.|+.+ .++|+|+.|+.|.|+||+|+. .+..||..+|+..|+....
T Consensus 67 dkDdaGWtPlhia~s~g~~evVk~Ll~r-----~~advna~tn~G~T~LHyAag----K~r~eIaqlLle~ga~i~~ 134 (226)
T KOG4412|consen 67 DKDDAGWTPLHIAASNGNDEVVKELLNR-----SGADVNATTNGGQTCLHYAAG----KGRLEIAQLLLEKGALIRI 134 (226)
T ss_pred CccccCCchhhhhhhcCcHHHHHHHhcC-----CCCCcceecCCCcceehhhhc----CChhhHHHHHHhcCCCCcc
Confidence 4677777777777777777 77777765 477777777777777777743 4456777777777766543
No 5
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.7e-10 Score=97.16 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=62.0
Q ss_pred CCcccccccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc-CC
Q 023199 14 ENTCQVSYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA-GA 91 (286)
Q Consensus 14 ~~~~~~~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~-Ga 91 (286)
.+.++.+.|.||+||||+||+.|+. ++++|++. .++.+|-+|..|+||||+|.+ .++.++++.|+.. |+
T Consensus 27 ~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-----~nv~~ddkDdaGWtPlhia~s----~g~~evVk~Ll~r~~a 97 (226)
T KOG4412|consen 27 PKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-----PNVKPDDKDDAGWTPLHIAAS----NGNDEVVKELLNRSGA 97 (226)
T ss_pred hhhhhccccccCCceeeeeeecCchhHHHHHHhc-----CCCCCCCccccCCchhhhhhh----cCcHHHHHHHhcCCCC
Confidence 3456677788999999999999999 99999986 799999999999999999965 5678899988865 66
Q ss_pred CCCC
Q 023199 92 TGMR 95 (286)
Q Consensus 92 ~~~~ 95 (286)
+...
T Consensus 98 dvna 101 (226)
T KOG4412|consen 98 DVNA 101 (226)
T ss_pred Ccce
Confidence 5543
No 6
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.87 E-value=6e-09 Score=78.48 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=53.7
Q ss_pred CChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 25 SDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 25 GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
|+||||+|+..|+. ++++|++ .+.++|.+|.+|+||||+|+. .++.+++++|.++|++..
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLE------NGADINSQDKNGNTALHYAAE----NGNLEIVKLLLEHGADVN 86 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHH------TTTCTT-BSTTSSBHHHHHHH----TTHHHHHHHHHHTTT-TT
T ss_pred CCCHHHHHHHcCCHHHHHHHHH------hcccccccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence 89999999999999 9999999 489999999999999999976 678899999999998654
No 7
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.85 E-value=7.8e-09 Score=86.05 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=51.6
Q ss_pred ccc-CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199 20 SYD-LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG 93 (286)
Q Consensus 20 ~kD-~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~ 93 (286)
.+| .+|+||||+|+..++. ++++|+++ .++++|.+|+.|.||||+|.. .++.+++++|+..|++.
T Consensus 86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~-----~g~d~n~~~~~g~tpL~~A~~----~~~~~i~~~Ll~~ga~~ 152 (154)
T PHA02736 86 GKERVFGNTPLHIAVYTQNYELATWLCNQ-----PGVNMEILNYAFKTPYYVACE----RHDAKMMNILRAKGAQC 152 (154)
T ss_pred ccCCCCCCcHHHHHHHhCCHHHHHHHHhC-----CCCCCccccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCC
Confidence 455 4788888888888888 88888864 478888888888888888864 55778888888888754
No 8
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.77 E-value=2e-08 Score=85.26 Aligned_cols=65 Identities=25% Similarity=0.348 Sum_probs=42.0
Q ss_pred cccCCCChHHHHHHHhCcH-H---HHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHH-cCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-V---IELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRS-AGATG 93 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-i---v~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~-~Ga~~ 93 (286)
.+|.+|+||||+|+..++. . +++|++ .|+++|.+| ..|.||||+|+. .++.+++++|+. .|++.
T Consensus 52 ~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~------~Gadin~~d~~~g~TpLh~A~~----~g~~~iv~~Ll~~~gad~ 121 (166)
T PHA02743 52 RYDHHGRQCTHMVAWYDRANAVMKIELLVN------MGADINARELGTGNTLLHIAAS----TKNYELAEWLCRQLGVNL 121 (166)
T ss_pred ccCCCCCcHHHHHHHhCccCHHHHHHHHHH------cCCCCCCCCCCCCCcHHHHHHH----hCCHHHHHHHHhccCCCc
Confidence 3567777777777776654 3 566776 367777776 467777777754 445666676663 56655
Q ss_pred C
Q 023199 94 M 94 (286)
Q Consensus 94 ~ 94 (286)
.
T Consensus 122 ~ 122 (166)
T PHA02743 122 G 122 (166)
T ss_pred c
Confidence 4
No 9
>PHA02730 ankyrin-like protein; Provisional
Probab=98.77 E-value=1.3e-08 Score=103.07 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=59.0
Q ss_pred cccCCCChHHHHHHHhC---cH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIH---LQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~---~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
++|.+|+||||+|+..+ +. ++++|+++ |++++.+|++|+||||+|+.. ..++.|++++|+++|+....
T Consensus 36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~------GAdin~kD~~G~TPLh~Aa~~--~~~~~eIv~~Ll~~~~~~~~ 107 (672)
T PHA02730 36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSR------GVERLCRNNEGLTPLGVYSKR--KYVKSQIVHLLISSYSNASN 107 (672)
T ss_pred hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC------CCCCcccCCCCCChHHHHHHc--CCCcHHHHHHHHhcCCCCCc
Confidence 68999999999999987 47 99999984 999999999999999998652 23478999999999876544
Q ss_pred C
Q 023199 96 D 96 (286)
Q Consensus 96 ~ 96 (286)
+
T Consensus 108 ~ 108 (672)
T PHA02730 108 E 108 (672)
T ss_pred c
Confidence 3
No 10
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=98.73 E-value=1.5e-08 Score=86.16 Aligned_cols=67 Identities=16% Similarity=0.085 Sum_probs=61.3
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD 96 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~ 96 (286)
.+|.||-||||-|+++|+. ++..|+. .|++.+++.++|+||||-| +++++.++...|+++|++....
T Consensus 92 trD~D~YTpLHRAaYn~h~div~~ll~------~gAn~~a~T~~GWTPLhSA----ckWnN~~va~~LLqhgaDVnA~ 159 (228)
T KOG0512|consen 92 TRDEDEYTPLHRAAYNGHLDIVHELLL------SGANKEAKTNEGWTPLHSA----CKWNNFEVAGRLLQHGADVNAQ 159 (228)
T ss_pred ccccccccHHHHHHhcCchHHHHHHHH------ccCCcccccccCccchhhh----hcccchhHHHHHHhccCccccc
Confidence 5899999999999999999 9999987 4999999999999999999 5688999999999999987653
No 11
>PHA02946 ankyin-like protein; Provisional
Probab=98.66 E-value=4.9e-08 Score=95.47 Aligned_cols=68 Identities=22% Similarity=0.229 Sum_probs=58.8
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
.+|.+|+||||+|++.++. ++++|+++ |+++|.+|++|.||||+|... .....+++++|++.|++...
T Consensus 67 ~~d~~G~TpLh~Aa~~g~~eiv~lLL~~------GAdin~~d~~g~TpLh~A~~~--~~~~~e~v~lLl~~Gadin~ 135 (446)
T PHA02946 67 ETDDDGNYPLHIASKINNNRIVAMLLTH------GADPNACDKQHKTPLYYLSGT--DDEVIERINLLVQYGAKINN 135 (446)
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHC------cCCCCCCCCCCCCHHHHHHHc--CCchHHHHHHHHHcCCCccc
Confidence 5899999999999999999 99999994 999999999999999998642 22356889999999987653
No 12
>PHA02741 hypothetical protein; Provisional
Probab=98.63 E-value=5.5e-08 Score=82.56 Aligned_cols=65 Identities=23% Similarity=0.251 Sum_probs=53.4
Q ss_pred cccCCCChHHHHHHHhCc----H-HHHHHhhCccccccCccccccCC-CCCCHHHHHhhCCCCCCcHHHHHHHHH-cCCC
Q 023199 20 SYDLSSDYKEQLKTWIHL----Q-VIELLLGHQANASQGLEVNAINH-SGVTAFDLLLISPSEAGDREIEEILRS-AGAT 92 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~----~-iv~~LL~~~~~~~~~v~vn~~N~-~G~TaLdiA~~~~~~~~~~ei~~~L~~-~Ga~ 92 (286)
.+|..|+||||+|+..++ . ++++|++ .++++|.+|. +|+||||+|+. .++.+++++|+. .|++
T Consensus 55 ~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~------~gadin~~~~~~g~TpLh~A~~----~~~~~iv~~Ll~~~g~~ 124 (169)
T PHA02741 55 ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE------LGADINAQEMLEGDTALHLAAH----RRDHDLAEWLCCQPGID 124 (169)
T ss_pred ccCCCCCcHHHHHHHcCChHHHHHHHHHHHH------cCCCCCCCCcCCCCCHHHHHHH----cCCHHHHHHHHhCCCCC
Confidence 588899999999999887 5 7788887 4889999885 89999999965 557789998886 5776
Q ss_pred CC
Q 023199 93 GM 94 (286)
Q Consensus 93 ~~ 94 (286)
..
T Consensus 125 ~~ 126 (169)
T PHA02741 125 LH 126 (169)
T ss_pred CC
Confidence 54
No 13
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=98.62 E-value=4.7e-08 Score=75.18 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199 23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD 96 (286)
Q Consensus 23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~ 96 (286)
..|++|||+|+..|+. +.++|++ .|++++.+|+.|-|||--|+- .++.+++++|++.||++...
T Consensus 32 ~ggR~plhyAAD~GQl~ilefli~------iGA~i~~kDKygITPLLsAvw----EGH~~cVklLL~~GAdrt~~ 96 (117)
T KOG4214|consen 32 YGGRTPLHYAADYGQLSILEFLIS------IGANIQDKDKYGITPLLSAVW----EGHRDCVKLLLQNGADRTIH 96 (117)
T ss_pred hCCcccchHhhhcchHHHHHHHHH------hccccCCccccCCcHHHHHHH----HhhHHHHHHHHHcCccccee
Confidence 5799999999999999 9999998 599999999999999998864 67999999999999987653
No 14
>PHA02795 ankyrin-like protein; Provisional
Probab=98.59 E-value=1.1e-07 Score=92.39 Aligned_cols=69 Identities=22% Similarity=0.180 Sum_probs=59.4
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCC----CCCcHHHHHHHHHcCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPS----EAGDREIEEILRSAGATGM 94 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~----~~~~~ei~~~L~~~Ga~~~ 94 (286)
++|.+|+||||+|+..|+. ++++|++ .|+++|.+|..|.||||+|+.... ...+.+++++|++.|+...
T Consensus 216 ~kD~~G~TpLh~Aa~~g~~eiVelLL~------~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~ 289 (437)
T PHA02795 216 QLDAGGRTLLYRAIYAGYIDLVSWLLE------NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID 289 (437)
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence 6899999999999999999 9999998 499999999999999999986321 1235789999999888554
No 15
>PHA02741 hypothetical protein; Provisional
Probab=98.58 E-value=1.5e-07 Score=79.87 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=29.8
Q ss_pred CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199 24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG 90 (286)
Q Consensus 24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G 90 (286)
+|+||||+|+..++. ++++|+++ .+++++.+|.+|.||||+|.. .++.++.++|.+.+
T Consensus 97 ~g~TpLh~A~~~~~~~iv~~Ll~~-----~g~~~~~~n~~g~tpL~~A~~----~~~~~iv~~L~~~~ 155 (169)
T PHA02741 97 EGDTALHLAAHRRDHDLAEWLCCQ-----PGIDLHFCNADNKSPFELAID----NEDVAMMQILREIV 155 (169)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhC-----CCCCCCcCCCCCCCHHHHHHH----CCCHHHHHHHHHHH
Confidence 455555555555555 55555542 245555555555555555532 33445555555444
No 16
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.56 E-value=1.6e-07 Score=79.73 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=9.8
Q ss_pred CccccccCCCCCCHHHHHh
Q 023199 53 GLEVNAINHSGVTAFDLLL 71 (286)
Q Consensus 53 ~v~vn~~N~~G~TaLdiA~ 71 (286)
+.+++.+|.+|+||||+|+
T Consensus 47 g~~~~~~d~~g~t~Lh~Aa 65 (166)
T PHA02743 47 GHLLHRYDHHGRQCTHMVA 65 (166)
T ss_pred chhhhccCCCCCcHHHHHH
Confidence 4445555555555555554
No 17
>PHA03095 ankyrin-like protein; Provisional
Probab=98.52 E-value=1.7e-07 Score=91.13 Aligned_cols=66 Identities=18% Similarity=0.092 Sum_probs=49.3
Q ss_pred cccCCCChHHHHHHHhCcH---HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ---VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~---iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
.+|.+|+||||+|+..++. .++.|+. .++++|.+|.+|+||||+|+. .++.+++++|++.|++...
T Consensus 217 ~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~------~g~din~~d~~g~TpLh~A~~----~~~~~~v~~LL~~gad~n~ 285 (471)
T PHA03095 217 ATDMLGNTPLHSMATGSSCKRSLVLPLLI------AGISINARNRYGQTPLHYAAV----FNNPRACRRLIALGADINA 285 (471)
T ss_pred ccCCCCCCHHHHHHhcCCchHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence 5678888888888877753 5666776 478888888888888888854 5567788888888887653
No 18
>PHA02798 ankyrin-like protein; Provisional
Probab=98.51 E-value=1.5e-07 Score=92.68 Aligned_cols=65 Identities=15% Similarity=0.034 Sum_probs=57.6
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
++|..|+||||+|+..++. ++++|++ .|+++|.+|..|+|||++|.. .++.++++.|++.|+...
T Consensus 253 ~~d~~G~TPL~~A~~~~~~~~v~~LL~------~GAdin~~d~~G~TpL~~A~~----~~~~~iv~~lL~~~~~~~ 318 (489)
T PHA02798 253 QVDELGFNPLYYSVSHNNRKIFEYLLQ------LGGDINIITELGNTCLFTAFE----NESKFIFNSILNKKPNKN 318 (489)
T ss_pred CcCcCCccHHHHHHHcCcHHHHHHHHH------cCCcccccCCCCCcHHHHHHH----cCcHHHHHHHHccCCCHH
Confidence 5789999999999999999 9999998 599999999999999999965 567889999998776543
No 19
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.49 E-value=2.4e-07 Score=91.41 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=55.0
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG 90 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G 90 (286)
.+|.+|+||||+|+..++. ++++|++ .|+++|.+|..|.||||+|.. .++.++++.|++.+
T Consensus 251 ~~d~~G~TpL~~Aa~~~~~~~v~~LL~------~Gadin~~d~~G~TpL~~A~~----~~~~~iv~~LL~~~ 312 (494)
T PHA02989 251 KKDKKGFNPLLISAKVDNYEAFNYLLK------LGDDIYNVSKDGDTVLTYAIK----HGNIDMLNRILQLK 312 (494)
T ss_pred CCCCCCCCHHHHHHHhcCHHHHHHHHH------cCCCccccCCCCCCHHHHHHH----cCCHHHHHHHHhcC
Confidence 5789999999999999999 9999998 499999999999999999975 56788999888765
No 20
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.49 E-value=2.8e-07 Score=88.40 Aligned_cols=64 Identities=22% Similarity=0.183 Sum_probs=37.9
Q ss_pred ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
+|.+|+||||+|+..|+. ++++|+++ ++++|.+|..|.||||+|+. .++.+++++|+..|++..
T Consensus 131 ~~~~g~tpLh~A~~~~~~~~v~~Ll~~------g~~~~~~d~~g~TpL~~A~~----~g~~eiv~~Ll~~ga~~n 195 (413)
T PHA02875 131 PNTDKFSPLHLAVMMGDIKGIELLIDH------KACLDIEDCCGCTPLIIAMA----KGDIAICKMLLDSGANID 195 (413)
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhc------CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCC
Confidence 455566666666665655 66666652 55666666666666666643 345566666666666544
No 21
>PHA02791 ankyrin-like protein; Provisional
Probab=98.48 E-value=2.7e-07 Score=85.24 Aligned_cols=62 Identities=15% Similarity=-0.080 Sum_probs=47.8
Q ss_pred CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCH-HHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTA-FDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~Ta-LdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
.|+||||+|+..|+. ++++|+++ |+++|.+|+.|.|| ||+|+. .++.+++++|+++|++...
T Consensus 159 ~g~TpLh~Aa~~g~~eiv~lLL~~------gAd~n~~d~~g~t~~L~~Aa~----~~~~e~v~lLl~~Ga~in~ 222 (284)
T PHA02791 159 ILLSCIHITIKNGHVDMMILLLDY------MTSTNTNNSLLFIPDIKLAID----NKDLEMLQALFKYDINIYS 222 (284)
T ss_pred cCccHHHHHHHcCCHHHHHHHHHC------CCCCCcccCCCCChHHHHHHH----cCCHHHHHHHHHCCCCCcc
Confidence 478888888888888 88888874 77888888888876 888854 5677888888888877643
No 22
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.48 E-value=3.2e-07 Score=85.30 Aligned_cols=64 Identities=22% Similarity=0.137 Sum_probs=51.0
Q ss_pred cCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 22 DLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 22 D~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
|.+|.||||+|+..++. ++++|+++ |+++|.++ ..|.||||+|+. .++.+++++|+..|++...
T Consensus 67 d~~g~TpLh~Aa~~~~~eivklLL~~------GADVN~~~~~~g~TpLh~Aa~----~~~~eivklLL~~GAdin~ 132 (300)
T PHA02884 67 ENSKTNPLIYAIDCDNDDAAKLLIRY------GADVNRYAEEAKITPLYISVL----HGCLKCLEILLSYGADINI 132 (300)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc------CCCcCcccCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence 56888888888888888 88888884 88888864 578888888864 5677888888888876654
No 23
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=98.46 E-value=2.2e-07 Score=98.35 Aligned_cols=67 Identities=22% Similarity=0.235 Sum_probs=61.0
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD 96 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~ 96 (286)
.++..|.||||.|+.+|+. +|++|+++ |++++++++.|+||||.|.. .++.+|.++|.++||...-.
T Consensus 535 ~~~~r~~TpLh~A~~~g~v~~VkfLLe~------gAdv~ak~~~G~TPLH~Aa~----~G~~~i~~LLlk~GA~vna~ 602 (1143)
T KOG4177|consen 535 LRTGRGYTPLHVAVHYGNVDLVKFLLEH------GADVNAKDKLGYTPLHQAAQ----QGHNDIAELLLKHGASVNAA 602 (1143)
T ss_pred hhcccccchHHHHHhcCCchHHHHhhhC------CccccccCCCCCChhhHHHH----cChHHHHHHHHHcCCCCCcc
Confidence 5778899999999999999 99999995 99999999999999999965 66899999999999987644
No 24
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.43 E-value=2.9e-07 Score=94.96 Aligned_cols=70 Identities=16% Similarity=0.065 Sum_probs=57.4
Q ss_pred cccCCCChHHHHHHHhCcH-HH-----HHHhhCccccccCccccccCCCCCCHHHHHhhCCC-CCCcHHHHHHHHHcCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VI-----ELLLGHQANASQGLEVNAINHSGVTAFDLLLISPS-EAGDREIEEILRSAGAT 92 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv-----~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~-~~~~~ei~~~L~~~Ga~ 92 (286)
.+|.+|+||||+|+..++. .+ ++|++ .|+++|.+|++|+||||+|..... +..+.+++++|++.|+.
T Consensus 492 ~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~------~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~ 565 (764)
T PHA02716 492 VCETSGMTPLHVSIISHTNANIVMDSFVYLLS------IQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPN 565 (764)
T ss_pred ccCCCCCCHHHHHHHcCCccchhHHHHHHHHh------CCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCC
Confidence 4688999999999998876 55 99998 599999999999999999986322 12355999999998876
Q ss_pred CCC
Q 023199 93 GMR 95 (286)
Q Consensus 93 ~~~ 95 (286)
...
T Consensus 566 ~~~ 568 (764)
T PHA02716 566 VDI 568 (764)
T ss_pred cch
Confidence 543
No 25
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=2.6e-07 Score=89.71 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=57.7
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
+.+++|-|+||-|+-.||. +|+||+. .|+|+|+.|.+|+||||.|+. .++.-+.+.|...|+..-
T Consensus 578 qpNdEGITaLHNAiCaghyeIVkFLi~------~ganVNa~DSdGWTPLHCAAS----CNnv~~ckqLVe~Gaavf 643 (752)
T KOG0515|consen 578 QPNDEGITALHNAICAGHYEIVKFLIE------FGANVNAADSDGWTPLHCAAS----CNNVPMCKQLVESGAAVF 643 (752)
T ss_pred CCCccchhHHhhhhhcchhHHHHHHHh------cCCcccCccCCCCchhhhhhh----cCchHHHHHHHhccceEE
Confidence 4678999999999999999 9999998 699999999999999999965 456778899999987653
No 26
>PHA02791 ankyrin-like protein; Provisional
Probab=98.43 E-value=4.5e-07 Score=83.75 Aligned_cols=61 Identities=16% Similarity=0.075 Sum_probs=31.2
Q ss_pred ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199 21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG 93 (286)
Q Consensus 21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~ 93 (286)
+|.+|+||||+|+..++. ++++|+++ ++++|..+ |.||||+|+. .++.+++++|+..|++.
T Consensus 26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~------ga~~n~~d--~~TpLh~Aa~----~g~~eiV~lLL~~Gadv 87 (284)
T PHA02791 26 ADVHGHSALYYAIADNNVRLVCTLLNA------GALKNLLE--NEFPLHQAAT----LEDTKIVKILLFSGMDD 87 (284)
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHC------cCCCcCCC--CCCHHHHHHH----CCCHHHHHHHHHCCCCC
Confidence 455566666666665555 55555553 44444332 4455555532 33445555555555443
No 27
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.41 E-value=4.8e-07 Score=88.17 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=55.8
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
.+|.+|+||||+|+..++. ++++|++ .|+++|.+|..|.||+|+|.. .++.+++++|++.|++..
T Consensus 245 ~~d~~g~TpL~~A~~~~~~~iv~~Ll~------~gad~n~~d~~g~tpl~~A~~----~~~~~iv~~Ll~~g~~i~ 310 (480)
T PHA03100 245 IKDVYGFTPLHYAVYNNNPEFVKYLLD------LGANPNLVNKYGDTPLHIAIL----NNNKEIFKLLLNNGPSIK 310 (480)
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCCcHHHHHHH----hCCHHHHHHHHhcCCCHH
Confidence 4788999999999999999 9999998 488999999999999999965 567789999999887443
No 28
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.40 E-value=2.8e-07 Score=57.17 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=29.6
Q ss_pred CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCC
Q 023199 24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINH 61 (286)
Q Consensus 24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~ 61 (286)
+|+||||+|+..++. ++++|++ .|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~------~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLK------HGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHH------TTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHH------CcCCCCCCCC
Confidence 699999999999999 9999999 4999999875
No 29
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.39 E-value=5.6e-07 Score=88.29 Aligned_cols=58 Identities=24% Similarity=0.233 Sum_probs=27.2
Q ss_pred CChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199 25 SDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGAT 92 (286)
Q Consensus 25 GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~ 92 (286)
|+||||+|+..++. ++++|++ .|+++|..|..|.||||+|+. .++.++++.|+..|++
T Consensus 168 g~tpLh~A~~~~~~~iv~~Ll~------~gad~n~~d~~g~tpLh~A~~----~~~~~iv~~Ll~~ga~ 226 (477)
T PHA02878 168 GNTALHYATENKDQRLTELLLS------YGANVNIPDKTNNSPLHHAVK----HYNKPIVHILLENGAS 226 (477)
T ss_pred CCCHHHHHHhCCCHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHH----hCCHHHHHHHHHcCCC
Confidence 55555555554444 5555544 244444444445555554432 2334444444444444
No 30
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.38 E-value=6.5e-07 Score=87.81 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=59.4
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
.+|.+|+||||+|+..++. ++++|++ .|+++|.+|..|.||||+|+.. .++.+++++|++.|++...
T Consensus 196 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~------~ga~in~~d~~g~TpLh~A~~~---~~~~~iv~~Ll~~gadvn~ 263 (477)
T PHA02878 196 IPDKTNNSPLHHAVKHYNKPIVHILLE------NGASTDARDKCGNTPLHISVGY---CKDYDILKLLLEHGVDVNA 263 (477)
T ss_pred CcCCCCCCHHHHHHHhCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHHHh---cCCHHHHHHHHHcCCCCCc
Confidence 5789999999999999999 9999998 4999999999999999999741 2467999999999987654
No 31
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.38 E-value=2.5e-07 Score=76.97 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=51.0
Q ss_pred cccCCCChHHHHHHHhCcH----HHHHHhhCccccccCccccccCC-CCCCHHHHHhhCCCCCCcHHHHHHHHH-cCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ----VIELLLGHQANASQGLEVNAINH-SGVTAFDLLLISPSEAGDREIEEILRS-AGATG 93 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~----iv~~LL~~~~~~~~~v~vn~~N~-~G~TaLdiA~~~~~~~~~~ei~~~L~~-~Ga~~ 93 (286)
.+|.+|.||||+|+..++. ++++|++ .|+++|.+|+ +|+||||+|+. .++.+++++|+. .|++.
T Consensus 50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~------~gadin~~~~~~g~T~Lh~A~~----~~~~~i~~~Ll~~~g~d~ 119 (154)
T PHA02736 50 EYNRHGKQCVHIVSNPDKADPQEKLKLLME------WGADINGKERVFGNTPLHIAVY----TQNYELATWLCNQPGVNM 119 (154)
T ss_pred HhcCCCCEEEEeecccCchhHHHHHHHHHH------cCCCccccCCCCCCcHHHHHHH----hCCHHHHHHHHhCCCCCC
Confidence 4688899999999988765 3677887 4889999984 89999999965 567788888886 46654
Q ss_pred C
Q 023199 94 M 94 (286)
Q Consensus 94 ~ 94 (286)
.
T Consensus 120 n 120 (154)
T PHA02736 120 E 120 (154)
T ss_pred c
Confidence 3
No 32
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.36 E-value=8.6e-07 Score=85.88 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=55.4
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
.+|.+|+||||+|+..++. ++++|++ .|+++|.+|.+|.||||+|.. .++.+++++|++.|+...
T Consensus 119 ~~~~~g~T~Lh~A~~~~~~~~v~~Ll~------~gad~n~~d~~g~tpLh~A~~----~~~~~iv~~Ll~~g~~~n 184 (434)
T PHA02874 119 IKDAELKTFLHYAIKKGDLESIKMLFE------YGADVNIEDDNGCYPIHIAIK----HNFFDIIKLLLEKGAYAN 184 (434)
T ss_pred CCCCCCccHHHHHHHCCCHHHHHHHHh------CCCCCCCcCCCCCCHHHHHHH----CCcHHHHHHHHHCCCCCC
Confidence 4688899999999999999 9999998 488999999999999999965 567789999999887654
No 33
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.36 E-value=1.2e-06 Score=76.97 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=48.7
Q ss_pred cccCCCChHHHHHHHhC--cH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIH--LQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~--~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
.+|..|.||||+|+..+ +. ++++|++ .|+++|.++ ..|.||||+|... ...++.+++++|+++|++...
T Consensus 46 ~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~------~gadvn~~~~~~g~TpLh~a~~~-~~~~~~eiv~~Ll~~gadin~ 118 (209)
T PHA02859 46 DCNDLYETPIFSCLEKDKVNVEILKFLIE------NGADVNFKTRDNNLSALHHYLSF-NKNVEPEILKILIDSGSSITE 118 (209)
T ss_pred ccCccCCCHHHHHHHcCCCCHHHHHHHHH------CCCCCCccCCCCCCCHHHHHHHh-CccccHHHHHHHHHCCCCCCC
Confidence 36777888888888654 66 8888887 478888876 4788888876531 112356788888888877654
No 34
>PHA03095 ankyrin-like protein; Provisional
Probab=98.35 E-value=9.5e-07 Score=85.83 Aligned_cols=67 Identities=22% Similarity=0.203 Sum_probs=51.4
Q ss_pred cccCCCChHHHHHHHhCc-H-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHL-Q-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~-~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
.+|.+|+||||+|+..++ . ++++|++ .|+++|.+|..|.||||+|.. ....+.+++++|++.|++..
T Consensus 78 ~~~~~g~TpLh~A~~~~~~~~iv~lLl~------~ga~in~~~~~g~tpLh~a~~--~~~~~~~iv~~Ll~~gad~~ 146 (471)
T PHA03095 78 APERCGFTPLHLYLYNATTLDVIKLLIK------AGADVNAKDKVGRTPLHVYLS--GFNINPKVIRLLLRKGADVN 146 (471)
T ss_pred CCCCCCCCHHHHHHHcCCcHHHHHHHHH------cCCCCCCCCCCCCCHHHHHhh--CCcCCHHHHHHHHHcCCCCC
Confidence 467788888888888884 6 8888887 488888888888888888863 23446678888888887654
No 35
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.35 E-value=9.1e-07 Score=77.84 Aligned_cols=67 Identities=7% Similarity=0.104 Sum_probs=52.2
Q ss_pred cc-CCCChHHHHHHHhC---cH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 21 YD-LSSDYKEQLKTWIH---LQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 21 kD-~~GnTpLHlAa~~~---~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
+| .+|.||||+|+..+ +. ++++|++ .|+++|.+|.+|.||||+|... ..++.+++++|++.|++...
T Consensus 82 ~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~------~gadin~~d~~G~TpLh~a~~~--~~~~~~iv~~Li~~gadin~ 153 (209)
T PHA02859 82 KTRDNNLSALHHYLSFNKNVEPEILKILID------SGSSITEEDEDGKNLLHMYMCN--FNVRINVIKLLIDSGVSFLN 153 (209)
T ss_pred cCCCCCCCHHHHHHHhCccccHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHHh--ccCCHHHHHHHHHcCCCccc
Confidence 44 57899999987643 56 8899998 4899999999999999988641 23467899999999988653
No 36
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.35 E-value=7.4e-07 Score=93.34 Aligned_cols=62 Identities=18% Similarity=0.093 Sum_probs=51.1
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga 91 (286)
.+|.+|+||||+|+..|+. ++++|++ .|+++|.+|.+|+||||.|.. .++.+++++|...++
T Consensus 553 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~------~gadin~~d~~G~TpL~~A~~----~g~~~iv~~L~~~~~ 615 (823)
T PLN03192 553 IGDSKGRTPLHIAASKGYEDCVLVLLK------HACNVHIRDANGNTALWNAIS----AKHHKIFRILYHFAS 615 (823)
T ss_pred CCCCCCCCHHHHHHHcChHHHHHHHHh------cCCCCCCcCCCCCCHHHHHHH----hCCHHHHHHHHhcCc
Confidence 5799999999999999999 9999998 499999999999999999965 345555555554443
No 37
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.35 E-value=9.6e-07 Score=84.69 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=56.2
Q ss_pred ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
.|.+|+||||+|+..++. ++++|++ .|+++|..|.+|.||||+|.. .++.++++.|+++|+...
T Consensus 98 ~~~~g~tpL~~A~~~~~~~iv~~Ll~------~gad~~~~~~~g~tpLh~A~~----~~~~~~v~~Ll~~g~~~~ 162 (413)
T PHA02875 98 FYKDGMTPLHLATILKKLDIMKLLIA------RGADPDIPNTDKFSPLHLAVM----MGDIKGIELLIDHKACLD 162 (413)
T ss_pred ccCCCCCHHHHHHHhCCHHHHHHHHh------CCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCCC
Confidence 467899999999999999 9999998 489999999999999999975 567899999999998654
No 38
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.35 E-value=8.6e-07 Score=90.81 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=55.5
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA 89 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~ 89 (286)
.+|.+|+||||+|+..|+. ++++|++ .|+++|.+|.+|.||||+|.. .++.+++++|+.+
T Consensus 110 ~~d~~G~TpLh~Aa~~g~~eiv~~LL~------~Gadvn~~d~~G~TpLh~A~~----~g~~~iv~~Ll~~ 170 (664)
T PTZ00322 110 CRDYDGRTPLHIACANGHVQVVRVLLE------FGADPTLLDKDGKTPLELAEE----NGFREVVQLLSRH 170 (664)
T ss_pred CcCCCCCcHHHHHHHCCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHH----CCcHHHHHHHHhC
Confidence 4789999999999999999 9999999 499999999999999999965 6788999999988
No 39
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.34 E-value=5.4e-07 Score=91.36 Aligned_cols=73 Identities=23% Similarity=0.156 Sum_probs=61.3
Q ss_pred CCCcccccccCCCChHHHHHHHhCcH-HHHHHhhCccccccCcccc---ccCCCCCCHHHHHhhCCCCCCcHHHHHHHHH
Q 023199 13 KENTCQVSYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVN---AINHSGVTAFDLLLISPSEAGDREIEEILRS 88 (286)
Q Consensus 13 ~~~~~~~~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn---~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~ 88 (286)
.++.+..+.|-.|+||||+|+..|+. ++++|+.+ |++.+ ..|.+|+||||.|+. +++..++++|++
T Consensus 329 ~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~------GA~~~~~~e~D~dg~TaLH~Aa~----~g~~~av~~Li~ 398 (929)
T KOG0510|consen 329 SDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK------GALFLNMSEADSDGNTALHLAAK----YGNTSAVQKLIS 398 (929)
T ss_pred cCccccccccccCCCchhhhhhcCHHHHHHHHHhc------ChhhhcccccccCCchhhhHHHH----hccHHHHHHHHH
Confidence 33444447899999999999999999 99999985 65555 559999999999965 788999999999
Q ss_pred cCCCCCC
Q 023199 89 AGATGMR 95 (286)
Q Consensus 89 ~Ga~~~~ 95 (286)
+||+.+.
T Consensus 399 ~Ga~I~~ 405 (929)
T KOG0510|consen 399 HGADIGV 405 (929)
T ss_pred cCCceee
Confidence 9999843
No 40
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.33 E-value=1.1e-06 Score=85.11 Aligned_cols=65 Identities=22% Similarity=0.213 Sum_probs=58.8
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
.+|.+|+||||+|+..++. ++++|+++ |++++..|..|.||||+|+. .++.+++++|++.|+...
T Consensus 152 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~------g~~~n~~~~~g~tpL~~A~~----~g~~~iv~~Ll~~g~~i~ 217 (434)
T PHA02874 152 IEDDNGCYPIHIAIKHNFFDIIKLLLEK------GAYANVKDNNGESPLHNAAE----YGDYACIKLLIDHGNHIM 217 (434)
T ss_pred CcCCCCCCHHHHHHHCCcHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCc
Confidence 4789999999999999999 99999984 89999999999999999975 678899999999998654
No 41
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=98.31 E-value=5.2e-07 Score=82.25 Aligned_cols=64 Identities=27% Similarity=0.275 Sum_probs=51.4
Q ss_pred ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
.+...+||||+|+.+|+. +|..|++ .++|+|+.|..|+||||+| +-++...|.+-|+.+||..+
T Consensus 63 tnmgddtplhlaaahghrdivqkll~------~kadvnavnehgntplhya----cfwgydqiaedli~~ga~v~ 127 (448)
T KOG0195|consen 63 TNMGDDTPLHLAAAHGHRDIVQKLLS------RKADVNAVNEHGNTPLHYA----CFWGYDQIAEDLISCGAAVN 127 (448)
T ss_pred ccCCCCcchhhhhhcccHHHHHHHHH------HhcccchhhccCCCchhhh----hhhcHHHHHHHHHhccceee
Confidence 345567888888888888 8888887 4889999999999999999 44777788888888888754
No 42
>PF13606 Ank_3: Ankyrin repeat
Probab=98.31 E-value=6.1e-07 Score=54.76 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=26.1
Q ss_pred CCChHHHHHHHhCcH-HHHHHhhCccccccCccccc
Q 023199 24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNA 58 (286)
Q Consensus 24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~ 58 (286)
+|+||||+|++.|+. ++++|+++ |+|+|+
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~------gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEH------GADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHc------CCCCCC
Confidence 699999999999999 99999995 788774
No 43
>PHA02946 ankyin-like protein; Provisional
Probab=98.30 E-value=1.4e-06 Score=85.35 Aligned_cols=61 Identities=21% Similarity=0.177 Sum_probs=36.8
Q ss_pred ccCCCChHHHHHHHhC--cH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCc-HHHHHHHHHcCCC
Q 023199 21 YDLSSDYKEQLKTWIH--LQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGD-REIEEILRSAGAT 92 (286)
Q Consensus 21 kD~~GnTpLHlAa~~~--~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~-~ei~~~L~~~Ga~ 92 (286)
+|.+|+||||+|+..+ +. ++++|+. ++++|.+|++|.||||+|+. .++ .++.++|+++|+.
T Consensus 204 ~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-------gadin~~d~~G~TpLh~A~~----~~~~~~~~~~Ll~~g~~ 268 (446)
T PHA02946 204 PDHDGNTPLHIVCSKTVKNVDIINLLLP-------STDVNKQNKFGDSPLTLLIK----TLSPAHLINKLLSTSNV 268 (446)
T ss_pred cCCCCCCHHHHHHHcCCCcHHHHHHHHc-------CCCCCCCCCCCCCHHHHHHH----hCChHHHHHHHHhCCCC
Confidence 5666777777776654 44 6666653 56666667777777776653 222 3566666666643
No 44
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=98.28 E-value=6.5e-07 Score=88.62 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=36.7
Q ss_pred ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
.|.+|-|+||+||.+++. ++++|+++ |+++|... .-|-||||.|.+ .++..++++|+++||++.
T Consensus 74 ~D~~g~tlLHWAAiNNrl~v~r~li~~------gadvn~~gG~l~stPLHWAar----~G~~~vv~lLlqhGAdpt 139 (600)
T KOG0509|consen 74 PDREGVTLLHWAAINNRLDVARYLISH------GADVNAIGGVLGSTPLHWAAR----NGHISVVDLLLQHGADPT 139 (600)
T ss_pred CCcCCccceeHHHHcCcHHHHHHHHHc------CCCccccCCCCCCCcchHHHH----cCcHHHHHHHHHcCCCCc
Confidence 455666666666665555 66666653 55555555 455566666643 445555666666665543
No 45
>PHA02798 ankyrin-like protein; Provisional
Probab=98.27 E-value=1.6e-06 Score=85.40 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=44.8
Q ss_pred cccCCCChHHHHHHHhC---cH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIH---LQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~---~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
.+|.+|+||||+|+..+ +. ++++|++ .|+++|.+|.+|.||||+|..... ..+.+++++|++.|++..
T Consensus 104 ~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~------~Gadvn~~d~~g~tpL~~a~~~~~-~~~~~vv~~Ll~~gadin 175 (489)
T PHA02798 104 KKNSDGETPLYCLLSNGYINNLEILLFMIE------NGADTTLLDKDGFTMLQVYLQSNH-HIDIEIIKLLLEKGVDIN 175 (489)
T ss_pred CCCCCcCcHHHHHHHcCCcChHHHHHHHHH------cCCCccccCCCCCcHHHHHHHcCC-cchHHHHHHHHHhCCCcc
Confidence 36677777777777654 45 7777776 377777777777777777754211 123677777777776643
No 46
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.24 E-value=1.1e-06 Score=91.98 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=54.0
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCcccc-------------------------ccCccccccCCCCCCHHHHHhhC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANA-------------------------SQGLEVNAINHSGVTAFDLLLIS 73 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~-------------------------~~~v~vn~~N~~G~TaLdiA~~~ 73 (286)
.+|.+|+||||+|+..|+. ++++|++..+.. ..|+++|.+|++|+||||+|..
T Consensus 586 ~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~- 664 (823)
T PLN03192 586 IRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA- 664 (823)
T ss_pred CcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-
Confidence 4688888888877666665 555544321100 1589999999999999999965
Q ss_pred CCCCCcHHHHHHHHHcCCCCCC
Q 023199 74 PSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 74 ~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
.++.+++++|+.+||+...
T Consensus 665 ---~g~~~iv~~Ll~~GAdv~~ 683 (823)
T PLN03192 665 ---EDHVDMVRLLIMNGADVDK 683 (823)
T ss_pred ---CCcHHHHHHHHHcCCCCCC
Confidence 6788999999999998654
No 47
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.22 E-value=6.4e-07 Score=86.19 Aligned_cols=66 Identities=26% Similarity=0.238 Sum_probs=59.8
Q ss_pred ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199 21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD 96 (286)
Q Consensus 21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~ 96 (286)
.|.-|+|.||+||++|+. ++++|++ .|+|+|.++..|+||||.+. +.++.+|+++|+++|+....+
T Consensus 146 anrhGhTcLmIa~ykGh~~I~qyLle------~gADvn~ks~kGNTALH~ca----EsG~vdivq~Ll~~ga~i~~d 212 (615)
T KOG0508|consen 146 ANRHGHTCLMIACYKGHVDIAQYLLE------QGADVNAKSYKGNTALHDCA----ESGSVDIVQLLLKHGAKIDVD 212 (615)
T ss_pred cccCCCeeEEeeeccCchHHHHHHHH------hCCCcchhcccCchHHHhhh----hcccHHHHHHHHhCCceeeec
Confidence 688999999999999999 9999999 69999999999999999994 467899999999999886544
No 48
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=98.21 E-value=1.9e-06 Score=85.45 Aligned_cols=62 Identities=23% Similarity=0.229 Sum_probs=52.5
Q ss_pred CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
.-|.||||+|+++|+. ++++|+++ |+|++++|.+|.||+|+|++ .++.-++-+|+..|++.+
T Consensus 110 ~l~stPLHWAar~G~~~vv~lLlqh------GAdpt~~D~~G~~~lHla~~----~~~~~~vayll~~~~d~d 172 (600)
T KOG0509|consen 110 VLGSTPLHWAARNGHISVVDLLLQH------GADPTLKDKQGLTPLHLAAQ----FGHTALVAYLLSKGADID 172 (600)
T ss_pred CCCCCcchHHHHcCcHHHHHHHHHc------CCCCceecCCCCcHHHHHHH----hCchHHHHHHHHhcccCC
Confidence 6688999999999999 99999985 99999999999999999965 667778888888886544
No 49
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.21 E-value=2.6e-06 Score=84.01 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=56.1
Q ss_pred cccCCCChHHHHHHHh---CcH-HHHHHhhCccccccCccc-cccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 20 SYDLSSDYKEQLKTWI---HLQ-VIELLLGHQANASQGLEV-NAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~---~~~-iv~~LL~~~~~~~~~v~v-n~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
.+|.+|.||||.|+.. ++. ++++|++ .|+++ +.+|..|+||||+|... ..++.+++++|+++|++..
T Consensus 103 ~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~------~Gadin~~~d~~g~tpLh~a~~~--~~~~~~iv~~Ll~~Gadi~ 174 (494)
T PHA02989 103 LKTFNGVSPIVCFIYNSNINNCDMLRFLLS------KGINVNDVKNSRGYNLLHMYLES--FSVKKDVIKILLSFGVNLF 174 (494)
T ss_pred CCCCCCCcHHHHHHHhcccCcHHHHHHHHH------CCCCcccccCCCCCCHHHHHHHh--ccCCHHHHHHHHHcCCCcc
Confidence 4788999999998765 467 9999998 49999 89999999999998642 2457789999999998765
Q ss_pred C
Q 023199 95 R 95 (286)
Q Consensus 95 ~ 95 (286)
.
T Consensus 175 ~ 175 (494)
T PHA02989 175 E 175 (494)
T ss_pred c
Confidence 4
No 50
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.19 E-value=3.1e-06 Score=82.52 Aligned_cols=62 Identities=24% Similarity=0.239 Sum_probs=30.4
Q ss_pred ccCCCChHHHHHH--HhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCC--cHHHHHHHHHcCCC
Q 023199 21 YDLSSDYKEQLKT--WIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAG--DREIEEILRSAGAT 92 (286)
Q Consensus 21 kD~~GnTpLHlAa--~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~--~~ei~~~L~~~Ga~ 92 (286)
+|.+|+||||+|+ ..++. ++++|++ .|++++..|..|.||||.|.. .+ +.+++++|++.|++
T Consensus 102 ~d~~g~tpL~~A~~~~~~~~~iv~~Ll~------~g~~~~~~~~~g~t~L~~A~~----~~~~~~~iv~~Ll~~g~d 168 (480)
T PHA03100 102 PDNNGITPLLYAISKKSNSYSIVEYLLD------NGANVNIKNSDGENLLHLYLE----SNKIDLKILKLLIDKGVD 168 (480)
T ss_pred CCCCCCchhhHHHhcccChHHHHHHHHH------cCCCCCccCCCCCcHHHHHHH----cCCChHHHHHHHHHCCCC
Confidence 4455555555555 44455 5555554 245555555555555555533 22 34445555555444
No 51
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.17 E-value=1.6e-06 Score=85.11 Aligned_cols=66 Identities=21% Similarity=0.160 Sum_probs=58.6
Q ss_pred ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199 21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD 96 (286)
Q Consensus 21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~ 96 (286)
-|.+|.|+||+||..|+. ..++|+.+ ++|+.++|..|+|||.+|. ..+..|+.++|+.+|.....-
T Consensus 657 ~~~~grt~LHLa~~~gnVvl~QLLiWy------g~dv~~rda~g~t~l~yar----~a~sqec~d~llq~gcp~e~~ 723 (749)
T KOG0705|consen 657 GEGDGRTALHLAARKGNVVLAQLLIWY------GVDVMARDAHGRTALFYAR----QAGSQECIDVLLQYGCPDECG 723 (749)
T ss_pred cCCCCcchhhhhhhhcchhHHHHHHHh------CccceecccCCchhhhhHh----hcccHHHHHHHHHcCCCcccc
Confidence 578899999999999999 88888884 9999999999999999994 477889999999999865543
No 52
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.17 E-value=1.1e-06 Score=77.36 Aligned_cols=84 Identities=18% Similarity=0.099 Sum_probs=56.0
Q ss_pred eeccCCCCcccccccCCCChHHHHHHHhCcH-HHHHHhhCccc---------------------------cccCcccccc
Q 023199 8 DITARKENTCQVSYDLSSDYKEQLKTWIHLQ-VIELLLGHQAN---------------------------ASQGLEVNAI 59 (286)
Q Consensus 8 ~~~~~~~~~~~~~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~---------------------------~~~~v~vn~~ 59 (286)
++..+..|..--..|+.|-|||.+|+.+|+. +|++|+..++. =..++|+|..
T Consensus 143 ~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvy 222 (296)
T KOG0502|consen 143 DVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVY 222 (296)
T ss_pred HHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCccee
Confidence 3444434444335899999999999999999 99999986332 0245666666
Q ss_pred CCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 60 NHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 60 N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
|-+|-|||-+|++ .++.++++.|+..||....
T Consensus 223 DwNGgTpLlyAvr----gnhvkcve~Ll~sGAd~t~ 254 (296)
T KOG0502|consen 223 DWNGGTPLLYAVR----GNHVKCVESLLNSGADVTQ 254 (296)
T ss_pred ccCCCceeeeeec----CChHHHHHHHHhcCCCccc
Confidence 6666666666643 4556666666666665543
No 53
>PHA02730 ankyrin-like protein; Provisional
Probab=98.16 E-value=3.5e-06 Score=85.75 Aligned_cols=66 Identities=17% Similarity=0.012 Sum_probs=57.6
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCC-CCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINH-SGVTAFDLLLISPSEAGDREIEEILRSAGATG 93 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~-~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~ 93 (286)
++|..|+||||+|+..++. ++++|+++ |+++|.+|+ .|.||+|.|.. ...++.+++++|+++|+..
T Consensus 457 akD~~G~TPLh~Aa~~~~~eive~LI~~------GAdIN~~d~~~g~TaL~~Aa~--~~~~~~eIv~~LLs~ga~i 524 (672)
T PHA02730 457 MIDNENKTLLYYAVDVNNIQFARRLLEY------GASVNTTSRSIINTAIQKSSY--RRENKTKLVDLLLSYHPTL 524 (672)
T ss_pred ccCCCCCCHHHHHHHhCCHHHHHHHHHC------CCCCCCCCCcCCcCHHHHHHH--hhcCcHHHHHHHHHcCCCH
Confidence 6899999999999999999 99999984 999999997 59999999964 1235789999999999754
No 54
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.16 E-value=3.3e-06 Score=85.83 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=54.6
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCC------------------------
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISP------------------------ 74 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~------------------------ 74 (286)
.+|+||+||||+|++.|++ .++.|++ .|+++|.+|+++.||||.|+...
T Consensus 268 ~~d~dg~tpLH~a~r~G~~~svd~Ll~------~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g 341 (929)
T KOG0510|consen 268 DEDNDGCTPLHYAARQGGPESVDNLLG------FGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHG 341 (929)
T ss_pred cccccCCchHHHHHHcCChhHHHHHHH------cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccC
Confidence 5688999999999999999 9999988 48888888888888888887531
Q ss_pred -------CCCCcHHHHHHHHHcCCCCCC
Q 023199 75 -------SEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 75 -------~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
...++.++++.|+..||.-.+
T Consensus 342 ~tpLHlaa~~gH~~v~qlLl~~GA~~~~ 369 (929)
T KOG0510|consen 342 MTPLHLAAKSGHDRVVQLLLNKGALFLN 369 (929)
T ss_pred CCchhhhhhcCHHHHHHHHHhcChhhhc
Confidence 012456788888888876553
No 55
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.15 E-value=1.5e-06 Score=81.36 Aligned_cols=57 Identities=25% Similarity=0.257 Sum_probs=40.0
Q ss_pred CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199 23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA 89 (286)
Q Consensus 23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~ 89 (286)
.-|+|+|.||+.+|+. +|+.||. .|+|+|++|.+|-|||..|. +.++.||+++|+..
T Consensus 338 Q~gQTALMLAVSHGr~d~vk~LLa------cgAdVNiQDdDGSTALMCA~----EHGhkEivklLLA~ 395 (452)
T KOG0514|consen 338 QHGQTALMLAVSHGRVDMVKALLA------CGADVNIQDDDGSTALMCAA----EHGHKEIVKLLLAV 395 (452)
T ss_pred hhcchhhhhhhhcCcHHHHHHHHH------ccCCCccccCCccHHHhhhh----hhChHHHHHHHhcc
Confidence 3477777777777777 7777776 37777777777777777773 35677777777655
No 56
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=98.13 E-value=6e-06 Score=70.12 Aligned_cols=66 Identities=29% Similarity=0.292 Sum_probs=57.2
Q ss_pred cccCCCChHHHHHHHhCc-----H-HHHHHhhCccccccCc---cccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199 20 SYDLSSDYKEQLKTWIHL-----Q-VIELLLGHQANASQGL---EVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG 90 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~-----~-iv~~LL~~~~~~~~~v---~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G 90 (286)
.+|.+|.||||+|+..++ . ++++|++. +. ..+..|.+|.||||+|.. .++.++++.|+..|
T Consensus 101 ~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~------g~~~~~~~~~~~~g~tpl~~A~~----~~~~~~~~~ll~~~ 170 (235)
T COG0666 101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA------GADLDVNNLRDEDGNTPLHWAAL----NGDADIVELLLEAG 170 (235)
T ss_pred cccCCCCcHHHHHHhcCCcccchHHHHHHHHHc------CCCCCCccccCCCCCchhHHHHH----cCchHHHHHHHhcC
Confidence 689999999999999999 8 99999995 66 667779999999999965 45669999999998
Q ss_pred CCCCC
Q 023199 91 ATGMR 95 (286)
Q Consensus 91 a~~~~ 95 (286)
+....
T Consensus 171 ~~~~~ 175 (235)
T COG0666 171 ADPNS 175 (235)
T ss_pred CCCcc
Confidence 76554
No 57
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.12 E-value=6.6e-06 Score=76.56 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=54.6
Q ss_pred cccCCCChH-HHHHHHhCcH-HHHHHhhCccccccCccccccC----CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199 20 SYDLSSDYK-EQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN----HSGVTAFDLLLISPSEAGDREIEEILRSAGATG 93 (286)
Q Consensus 20 ~kD~~GnTp-LHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N----~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~ 93 (286)
.+|++|+|+ ||.|++.++. ++++|+++ |+++|.++ +.|.||||+|+. .++.++.++|+++||+.
T Consensus 27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~------GAdiN~~~~~sd~~g~TpLh~Aa~----~~~~eivklLL~~GADV 96 (300)
T PHA02884 27 KKNKICIANILYSSIKFHYTDIIDAILKL------GADPEAPFPLSENSKTNPLIYAID----CDNDDAAKLLIRYGADV 96 (300)
T ss_pred ccCcCCCCHHHHHHHHcCCHHHHHHHHHC------CCCccccCcccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCc
Confidence 578887765 5666666788 99999994 99999974 689999999964 66889999999999987
Q ss_pred CC
Q 023199 94 MR 95 (286)
Q Consensus 94 ~~ 95 (286)
..
T Consensus 97 N~ 98 (300)
T PHA02884 97 NR 98 (300)
T ss_pred Cc
Confidence 74
No 58
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=98.11 E-value=4.6e-06 Score=76.19 Aligned_cols=71 Identities=25% Similarity=0.203 Sum_probs=60.3
Q ss_pred CCCCcccccccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199 12 RKENTCQVSYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG 90 (286)
Q Consensus 12 ~~~~~~~~~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G 90 (286)
..|+++++ -|+.|-+|||+||+.|+. +++.|++ .|+.+|..|....||||+|+. .++.+|+..|++..
T Consensus 22 ~tehdln~-gddhgfsplhwaakegh~aivemll~------rgarvn~tnmgddtplhlaaa----hghrdivqkll~~k 90 (448)
T KOG0195|consen 22 DTEHDLNV-GDDHGFSPLHWAAKEGHVAIVEMLLS------RGARVNSTNMGDDTPLHLAAA----HGHRDIVQKLLSRK 90 (448)
T ss_pred Cccccccc-ccccCcchhhhhhhcccHHHHHHHHh------cccccccccCCCCcchhhhhh----cccHHHHHHHHHHh
Confidence 34455554 789999999999999999 9999998 599999999999999999964 67899999998766
Q ss_pred CCC
Q 023199 91 ATG 93 (286)
Q Consensus 91 a~~ 93 (286)
++.
T Consensus 91 adv 93 (448)
T KOG0195|consen 91 ADV 93 (448)
T ss_pred ccc
Confidence 654
No 59
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.11 E-value=2.7e-06 Score=79.70 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=54.2
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA 89 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~ 89 (286)
.+|.||.|+|.+|+++|+. ++++||.. +.+|..+.|.+|-|||.+|. +.++.||.-+|-.+
T Consensus 368 iQDdDGSTALMCA~EHGhkEivklLLA~-----p~cd~sLtD~DgSTAl~IAl----eagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 368 IQDDDGSTALMCAAEHGHKEIVKLLLAV-----PSCDISLTDVDGSTALSIAL----EAGHREIAVMLYAH 429 (452)
T ss_pred cccCCccHHHhhhhhhChHHHHHHHhcc-----CcccceeecCCCchhhhhHH----hcCchHHHHHHHHH
Confidence 5899999999999999999 99999998 89999999999999999995 47788988777643
No 60
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.10 E-value=6.5e-06 Score=85.09 Aligned_cols=66 Identities=15% Similarity=0.018 Sum_probs=52.6
Q ss_pred cCCCChHHHHHHHh--CcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 22 DLSSDYKEQLKTWI--HLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 22 D~~GnTpLHlAa~~--~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
|..|+||||.|+.. ++. ++++|++ .|+++|.+|.+|.||||+|+.. +..+.+++++|+++||+...
T Consensus 174 d~~G~TpLH~A~~n~~~~~eIVklLLe------~GADVN~kD~~G~TPLH~Aa~~--g~~~~eIVklLLe~GADVN~ 242 (764)
T PHA02716 174 KKTGYGILHAYLGNMYVDIDILEWLCN------NGVNVNLQNNHLITPLHTYLIT--GNVCASVIKKIIELGGDMDM 242 (764)
T ss_pred CCCCCcHHHHHHHhccCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHHHc--CCCCHHHHHHHHHcCCCCCC
Confidence 78899999988643 466 9999998 4899999999999999999752 12245899999999988653
No 61
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.03 E-value=9.8e-06 Score=83.01 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=52.0
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga 91 (286)
.+|.+|+||||+|+..|+. ++++|++ .|+++|..+.+|.||||.|.. .++.++++.|...+.
T Consensus 173 ~~d~~G~TpLh~Aa~~G~~~iv~~LL~------~Gad~n~~~~~g~t~L~~A~~----~~~~~ivk~Ll~~~~ 235 (682)
T PHA02876 173 AKDIYCITPIHYAAERGNAKMVNLLLS------YGADVNIIALDDLSVLECAVD----SKNIDTIKAIIDNRS 235 (682)
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHH------CCCCcCccCCCCCCHHHHHHH----cCCHHHHHHHHhcCC
Confidence 4788999999999999999 9999999 499999999999999999965 345566666655443
No 62
>PHA02917 ankyrin-like protein; Provisional
Probab=98.01 E-value=1.1e-05 Score=82.71 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=57.9
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
++|..|+||||+|+..++. ++++|++ .|+++|.+|..|.||||+|.. ..++.+++++|+.+|+...
T Consensus 447 ~kd~~G~TpLh~Aa~~~~~~~v~~Ll~------~GAdin~~d~~G~T~L~~A~~---~~~~~~iv~~LL~~ga~i~ 513 (661)
T PHA02917 447 MIDKRGETLLHKAVRYNKQSLVSLLLE------SGSDVNIRSNNGYTCIAIAIN---ESRNIELLKMLLCHKPTLD 513 (661)
T ss_pred CCCCCCcCHHHHHHHcCCHHHHHHHHH------CcCCCCCCCCCCCCHHHHHHH---hCCCHHHHHHHHHcCCChh
Confidence 5899999999999999999 9999998 499999999999999999963 1346799999999987554
No 63
>PHA02917 ankyrin-like protein; Provisional
Probab=98.01 E-value=9.2e-06 Score=83.23 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=42.1
Q ss_pred cccCCCChHHHHHHHh---CcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhh
Q 023199 20 SYDLSSDYKEQLKTWI---HLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLI 72 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~---~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~ 72 (286)
++|.+|+||||+|++. |+. ++++|++ .|++++.+|.+|+||||.|..
T Consensus 27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~------~ga~v~~~~~~g~TpL~~Aa~ 77 (661)
T PHA02917 27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLD------SGTNPLHKNWRQLTPLEEYTN 77 (661)
T ss_pred ccCCCCCcHHHHHHHhhhcCcHHHHHHHHH------CCCCccccCCCCCCHHHHHHH
Confidence 5799999999998665 678 9999998 499999999999999998875
No 64
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=98.00 E-value=2e-05 Score=60.85 Aligned_cols=61 Identities=31% Similarity=0.348 Sum_probs=52.5
Q ss_pred ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCC
Q 023199 21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGA 91 (286)
Q Consensus 21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga 91 (286)
+|.+|.||||.|+..++. ++++|+++ +.+.+..+..|.||++.|.. .++.++.+.|+..|+
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~------~~~~~~~~~~g~~~l~~a~~----~~~~~~~~~ll~~~~ 64 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLEN------GADVNAKDNDGRTPLHLAAK----NGHLEIVKLLLEKGA 64 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHc------CCCCCccCCCCCcHHHHHHH----cCCHHHHHHHHHcCC
Confidence 578899999999999999 99999985 66678899999999999975 445689999999886
No 65
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=97.99 E-value=6.8e-06 Score=79.51 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=45.4
Q ss_pred cCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHH
Q 023199 22 DLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEE 84 (286)
Q Consensus 22 D~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~ 84 (286)
-..|+||||+|++.|+. .+++|+-+ |+|+++.|.+|.||+++|.. .++.++.+
T Consensus 164 pekg~TpLHvAAk~Gq~~Q~ElL~vY------GAD~~a~d~~GmtP~~~AR~----~gH~~lae 217 (669)
T KOG0818|consen 164 PEKGNTPLHVAAKAGQILQAELLAVY------GADPGAQDSSGMTPVDYARQ----GGHHELAE 217 (669)
T ss_pred cccCCchhHHHHhccchhhhhHHhhc------cCCCCCCCCCCCcHHHHHHh----cCchHHHH
Confidence 36799999999999999 99999985 99999999999999999954 55544443
No 66
>PHA02876 ankyrin repeat protein; Provisional
Probab=97.99 E-value=1.3e-05 Score=82.24 Aligned_cols=65 Identities=18% Similarity=0.075 Sum_probs=38.5
Q ss_pred cccCCCChHHHHHHHhC-cH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIH-LQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~-~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
.+|..|+||||+|+..+ +. ++++|++ .|+++|.+|..|.||||+|+. .++.++++.|+..|++..
T Consensus 336 ~~d~~g~TpLh~A~~~~~~~~iv~lLl~------~gadin~~d~~G~TpLh~Aa~----~~~~~iv~~Ll~~gad~~ 402 (682)
T PHA02876 336 AADRLYITPLHQASTLDRNKDIVITLLE------LGANVNARDYCDKTPIHYAAV----RNNVVIINTLLDYGADIE 402 (682)
T ss_pred CcccCCCcHHHHHHHhCCcHHHHHHHHH------cCCCCccCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCcc
Confidence 35666666666666544 33 5555555 366666666666666666643 345566666666665543
No 67
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=97.98 E-value=5.5e-06 Score=87.95 Aligned_cols=64 Identities=25% Similarity=0.257 Sum_probs=58.4
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATG 93 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~ 93 (286)
.+|+.|.||||.||..|+. ++++|+++ |+++|+.|.+|.|||++|.. .+..++.+.|...|+..
T Consensus 568 ak~~~G~TPLH~Aa~~G~~~i~~LLlk~------GA~vna~d~~g~TpL~iA~~----lg~~~~~k~l~~~~~~~ 632 (1143)
T KOG4177|consen 568 AKDKLGYTPLHQAAQQGHNDIAELLLKH------GASVNAADLDGFTPLHIAVR----LGYLSVVKLLKVVTATP 632 (1143)
T ss_pred ccCCCCCChhhHHHHcChHHHHHHHHHc------CCCCCcccccCcchhHHHHH----hcccchhhHHHhccCcc
Confidence 6899999999999999999 99999995 99999999999999999975 56778889999888874
No 68
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=97.90 E-value=4.9e-06 Score=80.12 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=57.0
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG 90 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G 90 (286)
++|.|.+|+||+||..|+. ++++|++. .+++.+.+|+.|+||||-|.+ .++.++.++|.++-
T Consensus 534 ~~DyD~RTaLHvAAaEG~v~v~kfl~~~-----~kv~~~~kDRw~rtPlDdA~~----F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 534 TKDYDDRTALHVAAAEGHVEVVKFLLNA-----CKVDPDPKDRWGRTPLDDAKH----FKHKEVVKLLEEAQ 596 (622)
T ss_pred ccccccchhheeecccCceeHHHHHHHH-----HcCCCChhhccCCCcchHhHh----cCcHHHHHHHHHHh
Confidence 7899999999999999999 99999996 799999999999999999954 78899999998764
No 69
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=97.90 E-value=1.2e-05 Score=68.56 Aligned_cols=61 Identities=21% Similarity=0.096 Sum_probs=51.4
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA 89 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~ 89 (286)
++.++|+||||-||+-++. ++-+||.+ |+|+|+..+..+||||+++.. .+.+...++|+..
T Consensus 125 a~T~~GWTPLhSAckWnN~~va~~LLqh------gaDVnA~t~g~ltpLhlaa~~---rn~r~t~~~Ll~d 186 (228)
T KOG0512|consen 125 AKTNEGWTPLHSACKWNNFEVAGRLLQH------GADVNAQTKGLLTPLHLAAGN---RNSRDTLELLLHD 186 (228)
T ss_pred cccccCccchhhhhcccchhHHHHHHhc------cCcccccccccchhhHHhhcc---cchHHHHHHHhhc
Confidence 5789999999999999999 99999984 999999999999999999752 3445666666653
No 70
>PHA02792 ankyrin-like protein; Provisional
Probab=97.89 E-value=1.8e-05 Score=80.04 Aligned_cols=68 Identities=21% Similarity=0.120 Sum_probs=55.2
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhC--CCC----CCcHHHHHHHHHcCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLIS--PSE----AGDREIEEILRSAGAT 92 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~--~~~----~~~~ei~~~L~~~Ga~ 92 (286)
.+|.+|+||||.|+..++. ++++|+++ |+++|.+|+.|.|||++|... ... ....++.++|++.|..
T Consensus 405 ~kD~~G~TPLh~Aa~~~n~eivelLLs~------GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~ 478 (631)
T PHA02792 405 KIDKHGRSILYYCIESHSVSLVEWLIDN------GADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT 478 (631)
T ss_pred cccccCcchHHHHHHcCCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999 99999994 999999999999999999641 111 1124678888888754
Q ss_pred C
Q 023199 93 G 93 (286)
Q Consensus 93 ~ 93 (286)
.
T Consensus 479 i 479 (631)
T PHA02792 479 I 479 (631)
T ss_pred h
Confidence 3
No 71
>PHA02795 ankyrin-like protein; Provisional
Probab=97.86 E-value=2.4e-05 Score=76.13 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=55.3
Q ss_pred CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
..|.|++|.|+..++. ++++|+++ |+++|.+|.+|.||||+|+. .++.+++++|++.|++...
T Consensus 186 ~~~~t~l~~a~~~~~~eIve~LIs~------GADIN~kD~~G~TpLh~Aa~----~g~~eiVelLL~~GAdIN~ 249 (437)
T PHA02795 186 IIQYTRGFLVDEPTVLEIYKLCIPY------IEDINQLDAGGRTLLYRAIY----AGYIDLVSWLLENGANVNA 249 (437)
T ss_pred hhccchhHHHHhcCHHHHHHHHHhC------cCCcCcCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence 4578899999988888 99999984 89999999999999999975 6788999999999987654
No 72
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.86 E-value=6.1e-05 Score=58.04 Aligned_cols=63 Identities=25% Similarity=0.325 Sum_probs=55.5
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGAT 92 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~ 92 (286)
.+|..|.||||.|+..++. ++++|+++ +.+++..|..|.||+|.|.. .++.++.++|...|..
T Consensus 35 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~------~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~L~~~~~~ 98 (126)
T cd00204 35 AKDNDGRTPLHLAAKNGHLEIVKLLLEK------GADVNARDKDGNTPLHLAAR----NGNLDVVKLLLKHGAD 98 (126)
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHc------CCCccccCCCCCCHHHHHHH----cCcHHHHHHHHHcCCC
Confidence 5789999999999999999 99999985 77889999999999999975 4568999999998733
No 73
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.81 E-value=2.1e-05 Score=76.80 Aligned_cols=66 Identities=20% Similarity=0.183 Sum_probs=59.3
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
..+.||+|+||-++...+. +|++|+++ +.++|..|++|+||||.|. ..++..|+++|+.+||....
T Consensus 68 ~~n~DglTalhq~~id~~~e~v~~l~e~------ga~Vn~~d~e~wtPlhaaa----scg~~~i~~~li~~gA~~~a 134 (527)
T KOG0505|consen 68 LCNVDGLTALHQACIDDNLEMVKFLVEN------GANVNAQDNEGWTPLHAAA----SCGYLNIVEYLIQHGANLLA 134 (527)
T ss_pred ccCCccchhHHHHHhcccHHHHHHHHHh------cCCccccccccCCcchhhc----ccccHHHHHHHHHhhhhhhh
Confidence 4578999999999999999 99999994 9999999999999999994 46788999999999987653
No 74
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.81 E-value=3.1e-05 Score=75.61 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=44.2
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhh
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLI 72 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~ 72 (286)
.+|..|+||||+|+..|+. .++.|+. .++++..+|++|++|||-|+.
T Consensus 50 ~~D~~g~TpLhlAV~Lg~~~~a~~Ll~------a~Adv~~kN~~gWs~L~EAv~ 97 (560)
T KOG0522|consen 50 RRDPPGRTPLHLAVRLGHVEAARILLS------AGADVSIKNNEGWSPLHEAVS 97 (560)
T ss_pred cccCCCCccHHHHHHhcCHHHHHHHHh------cCCCccccccccccHHHHHHH
Confidence 5789999999999999999 9999998 599999999999999999975
No 75
>PHA02792 ankyrin-like protein; Provisional
Probab=97.75 E-value=4.4e-05 Score=77.20 Aligned_cols=62 Identities=18% Similarity=0.020 Sum_probs=53.5
Q ss_pred cccCCCChHHHHHHHhC-------cH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199 20 SYDLSSDYKEQLKTWIH-------LQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA 89 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~-------~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~ 89 (286)
.+|..|+||||+|+..+ +. ++++|+++ |++++.+|+.|.||||+|+... ..+.||+++|...
T Consensus 170 ~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~------g~~~~~~d~~g~t~l~~~~~~~--~i~~ei~~~L~~~ 239 (631)
T PHA02792 170 YDDRMGKTVLYYYIITRSQDGYATSLDVINYLISH------EKEMRYYTYREHTTLYYYVDKC--DIKREIFDALFDS 239 (631)
T ss_pred cCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhC------CCCcCccCCCCChHHHHHHHcc--cchHHHHHHHHhc
Confidence 57888999999999998 78 99999995 9999999999999999998632 2367899988864
No 76
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.72 E-value=4.8e-05 Score=78.81 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=53.2
Q ss_pred cCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC--------------CCCCCHHHHHhhCCCCCCcHHHHHHH
Q 023199 22 DLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN--------------HSGVTAFDLLLISPSEAGDREIEEIL 86 (286)
Q Consensus 22 D~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N--------------~~G~TaLdiA~~~~~~~~~~ei~~~L 86 (286)
+..|.||||+|+.+++. ++++|+++ |+++|.++ ..|.||||+|.. .++.+++++|
T Consensus 125 ~~~G~TpLhlAa~~~~~eiVklLL~~------GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~----~~~~~iv~lL 194 (743)
T TIGR00870 125 FTPGITALHLAAHRQNYEIVKLLLER------GASVPARACGDFFVKSQGVDSFYHGESPLNAAAC----LGSPSIVALL 194 (743)
T ss_pred cCCCCcHHHHHHHhCCHHHHHHHHhC------CCCCCcCcCCchhhcCCCCCcccccccHHHHHHH----hCCHHHHHHH
Confidence 35799999999999999 99999984 88888653 369999999964 5688999999
Q ss_pred HHcCCCCC
Q 023199 87 RSAGATGM 94 (286)
Q Consensus 87 ~~~Ga~~~ 94 (286)
++.|++..
T Consensus 195 l~~gadin 202 (743)
T TIGR00870 195 SEDPADIL 202 (743)
T ss_pred hcCCcchh
Confidence 99997653
No 77
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=97.71 E-value=1.8e-05 Score=80.03 Aligned_cols=66 Identities=21% Similarity=0.176 Sum_probs=57.4
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
.+|.+|.+|||+|++.|+. +++.|+.+ +..+|+.+.+|.||||+++. .++.+.+.+|+++|+++..
T Consensus 77 l~d~kg~~plhlaaw~g~~e~vkmll~q------~d~~na~~~e~~tplhlaaq----hgh~dvv~~Ll~~~adp~i 143 (854)
T KOG0507|consen 77 LCDTKGILPLHLAAWNGNLEIVKMLLLQ------TDILNAVNIENETPLHLAAQ----HGHLEVVFYLLKKNADPFI 143 (854)
T ss_pred hhhccCcceEEehhhcCcchHHHHHHhc------ccCCCcccccCcCccchhhh----hcchHHHHHHHhcCCCccc
Confidence 5788999999999999999 99998884 67789999999999999964 6788999999999988775
No 78
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=97.69 E-value=0.00011 Score=54.86 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=45.5
Q ss_pred HHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 29 EQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 29 LHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
||+|+..++. ++++|++. +.+++. |.||||+|.. .++.+++++|++.|++...
T Consensus 1 L~~A~~~~~~~~~~~ll~~------~~~~~~----~~~~l~~A~~----~~~~~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEK------GADINL----GNTALHYAAE----NGNLEIVKLLLENGADINS 54 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHT------TSTTTS----SSBHHHHHHH----TTTHHHHHHHHHTTTCTT-
T ss_pred CHHHHHcCCHHHHHHHHHC------cCCCCC----CCCHHHHHHH----cCCHHHHHHHHHhcccccc
Confidence 8999999999 99999984 666666 9999999975 6788999999999987654
No 79
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=97.67 E-value=7e-05 Score=63.50 Aligned_cols=63 Identities=27% Similarity=0.297 Sum_probs=55.5
Q ss_pred cccccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199 18 QVSYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG 90 (286)
Q Consensus 18 ~~~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G 90 (286)
...+|.+|+||||+|+..++. ++++|++ .+.+++..|..|.|+++.+. ..++.++...+...+
T Consensus 140 ~~~~~~~g~tpl~~A~~~~~~~~~~~ll~------~~~~~~~~~~~g~t~l~~a~----~~~~~~~~~~l~~~~ 203 (235)
T COG0666 140 NNLRDEDGNTPLHWAALNGDADIVELLLE------AGADPNSRNSYGVTALDPAA----KNGRIELVKLLLDKG 203 (235)
T ss_pred ccccCCCCCchhHHHHHcCchHHHHHHHh------cCCCCcccccCCCcchhhhc----ccchHHHHHHHHhcC
Confidence 345799999999999999999 9999998 58999999999999999994 466778888888876
No 80
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.64 E-value=5.6e-05 Score=73.82 Aligned_cols=66 Identities=21% Similarity=0.151 Sum_probs=57.6
Q ss_pred ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199 21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD 96 (286)
Q Consensus 21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~ 96 (286)
.+..|-|.||+|+.+|.. ..++|+. .+.+++++|.+|+||||-|+. ++..+..++|..+|+.....
T Consensus 194 ~~~rG~T~lHvAaa~Gy~e~~~lLl~------ag~~~~~~D~dgWtPlHAAA~----Wg~~~~~elL~~~ga~~d~~ 260 (527)
T KOG0505|consen 194 RHARGATALHVAAANGYTEVAALLLQ------AGYSVNIKDYDGWTPLHAAAH----WGQEDACELLVEHGADMDAK 260 (527)
T ss_pred cccccchHHHHHHhhhHHHHHHHHHH------hccCcccccccCCCcccHHHH----hhhHhHHHHHHHhhcccchh
Confidence 444599999999999999 9999998 499999999999999999954 88889999999999886543
No 81
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.53 E-value=4.3e-05 Score=77.99 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=57.6
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCC-CCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINH-SGVTAFDLLLISPSEAGDREIEEILRSAGAT 92 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~-~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~ 92 (286)
.+|..|+|+||+|+..+.. ++++|+.+ |++++.+|. .|.||||-|.. +|+.++...|+++|+.
T Consensus 47 ikD~~GR~alH~~~S~~k~~~l~wLlqh------Gidv~vqD~ESG~taLHRaiy----yG~idca~lLL~~g~S 111 (1267)
T KOG0783|consen 47 IKDRYGRTALHIAVSENKNSFLRWLLQH------GIDVFVQDEESGYTALHRAIY----YGNIDCASLLLSKGRS 111 (1267)
T ss_pred HHHhhccceeeeeeccchhHHHHHHHhc------CceeeeccccccchHhhHhhh----hchHHHHHHHHhcCCc
Confidence 7899999999999999988 99999995 999999995 69999999965 8899999999999954
No 82
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=97.39 E-value=0.00014 Score=50.51 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=24.6
Q ss_pred CccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 53 GLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 53 ~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
..++|..|..|+||||+|+. .++.+++++|+..|++...
T Consensus 6 ~~~~n~~d~~G~T~LH~A~~----~g~~~~v~~Ll~~g~d~~~ 44 (56)
T PF13857_consen 6 PADVNAQDKYGNTPLHWAAR----YGHSEVVRLLLQNGADPNA 44 (56)
T ss_dssp T--TT---TTS--HHHHHHH----HT-HHHHHHHHHCT--TT-
T ss_pred cCCCcCcCCCCCcHHHHHHH----cCcHHHHHHHHHCcCCCCC
Confidence 48999999999999999976 6788999999998886654
No 83
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=97.34 E-value=0.00041 Score=63.62 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=57.8
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
+.|..|.|+|-.|+..|+. .+++|++. |+|+|... ..+.|||+.|+. .|+.++-++|+.+|++...
T Consensus 40 ~~D~sGMs~LahAaykGnl~~v~lll~~------gaDvN~~qhg~~YTpLmFAAL----SGn~dvcrllldaGa~~~~ 107 (396)
T KOG1710|consen 40 QRDPSGMSVLAHAAYKGNLTLVELLLEL------GADVNDKQHGTLYTPLMFAAL----SGNQDVCRLLLDAGARMYL 107 (396)
T ss_pred ccCCCcccHHHHHHhcCcHHHHHHHHHh------CCCcCcccccccccHHHHHHH----cCCchHHHHHHhccCcccc
Confidence 6799999999999999999 99999994 99998764 679999999976 5677899999999997653
No 84
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.24 E-value=0.00025 Score=68.79 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=55.8
Q ss_pred CChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199 25 SDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD 96 (286)
Q Consensus 25 GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~ 96 (286)
..|||.-||..|+. ++++|+++ ++|+++.|+.|.|.|+||. ..++.+|.++|++.||+....
T Consensus 117 NStPLraACfDG~leivKyLvE~------gad~~IanrhGhTcLmIa~----ykGh~~I~qyLle~gADvn~k 179 (615)
T KOG0508|consen 117 NSTPLRAACFDGHLEIVKYLVEH------GADPEIANRHGHTCLMIAC----YKGHVDIAQYLLEQGADVNAK 179 (615)
T ss_pred CCccHHHHHhcchhHHHHHHHHc------CCCCcccccCCCeeEEeee----ccCchHHHHHHHHhCCCcchh
Confidence 45999999999999 99999984 9999999999999999994 478999999999999987653
No 85
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.16 E-value=0.0008 Score=69.16 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=52.5
Q ss_pred hHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 27 YKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 27 TpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
+.||.|+..|+. .+++|++ .|+++|.+|.+|.||||+|+. .++.+++++|+..|++...
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~------~Gadin~~d~~G~TpLh~Aa~----~g~~eiv~~LL~~Gadvn~ 143 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLT------GGADPNCRDYDGRTPLHIACA----NGHVQVVRVLLEFGADPTL 143 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCcHHHHHHH----CCCHHHHHHHHHCCCCCCC
Confidence 458899999999 9999998 489999999999999999965 6789999999999987653
No 86
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=97.12 E-value=0.00042 Score=47.38 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=18.6
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHh
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLL 44 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL 44 (286)
.+|.+|+||||+|++.|+. ++++|+
T Consensus 29 ~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 29 AQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp -B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 3599999999999999999 999986
No 87
>PF13606 Ank_3: Ankyrin repeat
Probab=97.01 E-value=0.001 Score=40.39 Aligned_cols=29 Identities=31% Similarity=0.315 Sum_probs=24.9
Q ss_pred CCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 62 SGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 62 ~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
+|+||||+|.. .++.+++++|+++|++..
T Consensus 1 ~G~T~Lh~A~~----~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 1 NGNTPLHLAAS----NGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCCHHHHHHH----hCCHHHHHHHHHcCCCCC
Confidence 59999999976 578999999999998653
No 88
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=96.91 E-value=0.00051 Score=71.27 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=50.3
Q ss_pred CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCC-----CcHHHHHHHHHcCCCC
Q 023199 23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEA-----GDREIEEILRSAGATG 93 (286)
Q Consensus 23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~-----~~~ei~~~L~~~Ga~~ 93 (286)
..|.||||+|+..++. ++++|+++ ++|+|.+|+.|+||||+|+...... ....+.+.+...+++.
T Consensus 173 ~~g~tpL~~Aa~~~~~~iv~lLl~~------gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~ 243 (743)
T TIGR00870 173 YHGESPLNAAACLGSPSIVALLSED------PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL 243 (743)
T ss_pred cccccHHHHHHHhCCHHHHHHHhcC------CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 4699999999999999 99999985 8899999999999999997632110 0224566676666553
No 89
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=96.89 E-value=0.0015 Score=50.63 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=41.6
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHH
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLL 70 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA 70 (286)
.+|+.|-|||.-|++.|+. +|++|++ .|++...+--+|.+.++-+
T Consensus 62 ~kDKygITPLLsAvwEGH~~cVklLL~------~GAdrt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 62 DKDKYGITPLLSAVWEGHRDCVKLLLQ------NGADRTIHAPDGTALIEAT 107 (117)
T ss_pred CccccCCcHHHHHHHHhhHHHHHHHHH------cCcccceeCCCchhHHhhc
Confidence 4999999999999999999 9999999 5999999999999988876
No 90
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.88 E-value=0.0011 Score=67.86 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=47.6
Q ss_pred CCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199 24 SSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGAT 92 (286)
Q Consensus 24 ~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~ 92 (286)
.|..||-+||-.+++ ++++|+. .++|+|++|..|+|.||+.+.. ...++.++++++|++
T Consensus 239 fGEyPLSfAAC~nq~eivrlLl~------~gAd~~aqDS~GNTVLH~lVi~----~~~~My~~~L~~ga~ 298 (782)
T KOG3676|consen 239 FGEYPLSFAACTNQPEIVRLLLA------HGADPNAQDSNGNTVLHMLVIH----FVTEMYDLALELGAN 298 (782)
T ss_pred eccCchHHHHHcCCHHHHHHHHh------cCCCCCccccCCChHHHHHHHH----HHHHHHHHHHhcCCC
Confidence 467788888888888 8888888 4888888888888888888652 345788888888887
No 91
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.87 E-value=0.0015 Score=66.95 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=49.9
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCcc--ccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLE--VNAINHSGVTAFDLLLISPSEAGDREIEEILRSA 89 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~--vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~ 89 (286)
++|..|||.||.-+.+-.. +.++++++ +.+ ..++|++|.|||-+|++ .+..++.+.+++.
T Consensus 268 aqDS~GNTVLH~lVi~~~~~My~~~L~~------ga~~l~~v~N~qgLTPLtLAak----lGk~emf~~ile~ 330 (782)
T KOG3676|consen 268 AQDSNGNTVLHMLVIHFVTEMYDLALEL------GANALEHVRNNQGLTPLTLAAK----LGKKEMFQHILER 330 (782)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHHHhc------CCCccccccccCCCChHHHHHH----hhhHHHHHHHHHh
Confidence 5999999999999998766 89999985 666 88999999999999965 5677766655543
No 92
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=96.79 E-value=0.0017 Score=39.83 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=25.9
Q ss_pred CCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 62 SGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 62 ~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
+|+||||+|+. .++.+++++|++.|++...
T Consensus 1 dG~TpLh~A~~----~~~~~~v~~Ll~~ga~~~~ 30 (33)
T PF00023_consen 1 DGNTPLHYAAQ----RGHPDIVKLLLKHGADINA 30 (33)
T ss_dssp TSBBHHHHHHH----TTCHHHHHHHHHTTSCTTC
T ss_pred CcccHHHHHHH----HHHHHHHHHHHHCcCCCCC
Confidence 59999999976 6689999999999987653
No 93
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=0.0016 Score=63.98 Aligned_cols=61 Identities=16% Similarity=-0.014 Sum_probs=47.4
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHH
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRS 88 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~ 88 (286)
+.|.+|+||||+||..++. +++.|+++ |+.+-+.. .++.||.+-+.. .+.+...+..+|-.
T Consensus 611 a~DSdGWTPLHCAASCNnv~~ckqLVe~------GaavfAsTlSDmeTa~eKCee--~eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 611 AADSDGWTPLHCAASCNNVPMCKQLVES------GAAVFASTLSDMETAAEKCEE--MEEGYDQCSQYLYG 673 (752)
T ss_pred CccCCCCchhhhhhhcCchHHHHHHHhc------cceEEeeecccccchhhhcch--hhhhHHHHHHHHHH
Confidence 6899999999999999999 99999995 66666655 789999998743 22344556666653
No 94
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=96.62 E-value=0.002 Score=65.63 Aligned_cols=60 Identities=20% Similarity=0.162 Sum_probs=52.3
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA 89 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~ 89 (286)
....+|.||||+||.+++. ++.+|+++ +.|.-+.|+.+.|++|+|.+ .+..+.+.+|++.
T Consensus 110 a~~~e~~tplhlaaqhgh~dvv~~Ll~~------~adp~i~nns~~t~ldlA~q----fgr~~Vvq~ll~~ 170 (854)
T KOG0507|consen 110 AVNIENETPLHLAAQHGHLEVVFYLLKK------NADPFIRNNSKETVLDLASR----FGRAEVVQMLLQK 170 (854)
T ss_pred cccccCcCccchhhhhcchHHHHHHHhc------CCCccccCcccccHHHHHHH----hhhhHHHHHHhhh
Confidence 4567899999999999999 99999994 99999999999999999965 6667777777765
No 95
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=96.37 E-value=0.013 Score=51.01 Aligned_cols=62 Identities=16% Similarity=0.037 Sum_probs=54.4
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG 90 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G 90 (286)
..|..|+|+|..|+..|+. .+.+|+.+ ..+.+...|..|++++.+|.+ .+..+.+..|.+.-
T Consensus 7 ~rD~fgWTalmcaa~eg~~eavsyllgr-----g~a~vgv~d~ssldaaqlaek----~g~~~fvh~lfe~~ 69 (223)
T KOG2384|consen 7 ARDAFGWTALMCAAMEGSNEAVSYLLGR-----GVAFVGVTDESSLDAAQLAEK----GGAQAFVHSLFEND 69 (223)
T ss_pred chhhhcchHHHHHhhhcchhHHHHHhcc-----CcccccccccccchHHHHHHh----cChHHHHHHHHHHh
Confidence 4899999999999999999 99999996 238999999999999999964 67788888888763
No 96
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=96.23 E-value=0.0039 Score=55.38 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=43.2
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhh
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLI 72 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~ 72 (286)
..|-+|-|||-+|+.-++. +++.|+. .|++++..+..|++++|+|+.
T Consensus 221 vyDwNGgTpLlyAvrgnhvkcve~Ll~------sGAd~t~e~dsGy~~mdlAVa 268 (296)
T KOG0502|consen 221 VYDWNGGTPLLYAVRGNHVKCVESLLN------SGADVTQEDDSGYWIMDLAVA 268 (296)
T ss_pred eeccCCCceeeeeecCChHHHHHHHHh------cCCCcccccccCCcHHHHHHH
Confidence 4788999999999987777 9999998 599999999999999999976
No 97
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=95.83 E-value=0.0079 Score=62.79 Aligned_cols=63 Identities=24% Similarity=0.231 Sum_probs=53.2
Q ss_pred CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 23 LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 23 ~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
..|.|+||.|+..+.. +.++|+. .+.++|.+|..|+||+|.+.. .++..+...|.+.||.+.-
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~------~ga~vn~~d~~g~~plh~~~~----~g~~~~~~~ll~~~a~~~a 717 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQ------NGADVNALDSKGRTPLHHATA----SGHTSIACLLLKRGADPNA 717 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHh------cCCcchhhhccCCCcchhhhh----hcccchhhhhccccccccc
Confidence 4579999999999999 9999998 499999999999999999965 4566777778887776654
No 98
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=95.79 E-value=0.0044 Score=61.39 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=56.3
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
.+|.+-.|.||.|++.|+. +|+|++.+. +.--+++.|..|.|+||-|+- .++..+-.+|..+||.-.+
T Consensus 894 ~~~~~~~sllh~a~~tg~~eivkyildh~----p~elld~~de~get~lhkaa~----~~~r~vc~~lvdagasl~k 962 (1004)
T KOG0782|consen 894 IQGPDHCSLLHYAAKTGNGEIVKYILDHG----PSELLDMADETGETALHKAAC----QRNRAVCQLLVDAGASLRK 962 (1004)
T ss_pred eeCcchhhHHHHHHhcCChHHHHHHHhcC----CHHHHHHHhhhhhHHHHHHHH----hcchHHHHHHHhcchhhee
Confidence 3688899999999999999 999999983 234578889999999999953 4566788999999986544
No 99
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=95.61 E-value=0.011 Score=61.06 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=42.6
Q ss_pred ccc-CCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhh
Q 023199 20 SYD-LSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLI 72 (286)
Q Consensus 20 ~kD-~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~ 72 (286)
.+| ..|.||||-|..+|+. ++-.||++ |+.+.++|++|+.||+...+
T Consensus 80 vqD~ESG~taLHRaiyyG~idca~lLL~~------g~SL~i~Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 80 VQDEESGYTALHRAIYYGNIDCASLLLSK------GRSLRIKDKEGLSPLQFLSR 128 (1267)
T ss_pred eccccccchHhhHhhhhchHHHHHHHHhc------CCceEEecccCCCHHHHHhh
Confidence 466 4599999999999999 99999985 89999999999999998876
No 100
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=95.59 E-value=0.017 Score=31.99 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=21.0
Q ss_pred CCChHHHHHHHhCcH-HHHHHhhC
Q 023199 24 SSDYKEQLKTWIHLQ-VIELLLGH 46 (286)
Q Consensus 24 ~GnTpLHlAa~~~~~-iv~~LL~~ 46 (286)
+|+||||+|+..++. +++.|+.+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~ 24 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDK 24 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHc
Confidence 489999999999999 99999985
No 101
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=94.98 E-value=0.01 Score=62.41 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=52.3
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
+.|.+|.-.+|++|. ++. ..-+|+.- .++.++.+|..|+||||+|.. .++.++...|...|+.++-
T Consensus 603 eld~d~qgV~hfca~-lg~ewA~ll~~~-----~~~ai~i~D~~G~tpL~wAa~----~G~e~l~a~l~~lga~~~~ 669 (975)
T KOG0520|consen 603 ELDRDGQGVIHFCAA-LGYEWAFLPISA-----DGVAIDIRDRNGWTPLHWAAF----RGREKLVASLIELGADPGA 669 (975)
T ss_pred hhcccCCChhhHhhh-cCCceeEEEEee-----cccccccccCCCCcccchHhh----cCHHHHHHHHHHhcccccc
Confidence 567788888888664 444 44455544 589999999999999999954 7888999999999988873
No 102
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=94.66 E-value=0.049 Score=50.29 Aligned_cols=50 Identities=20% Similarity=0.103 Sum_probs=44.3
Q ss_pred ccccccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhh
Q 023199 17 CQVSYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLI 72 (286)
Q Consensus 17 ~~~~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~ 72 (286)
.+.-++.-+-||||.||-.|+. +.++|++ .|+.....|.-|+||-.+|+-
T Consensus 71 vN~~qhg~~YTpLmFAALSGn~dvcrllld------aGa~~~~vNsvgrTAaqmAAF 121 (396)
T KOG1710|consen 71 VNDKQHGTLYTPLMFAALSGNQDVCRLLLD------AGARMYLVNSVGRTAAQMAAF 121 (396)
T ss_pred cCcccccccccHHHHHHHcCCchHHHHHHh------ccCccccccchhhhHHHHHHH
Confidence 3445678899999999999999 9999998 699999999999999999964
No 103
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=94.61 E-value=0.016 Score=61.70 Aligned_cols=65 Identities=28% Similarity=0.198 Sum_probs=48.7
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
++|..+.|+|-+||.-|.. ++++||.. +++...+|-...|||.+|. ..+..+|+.+|+.+|+..+
T Consensus 819 Qsdrtkdt~lSlacsggr~~vvelLl~~------gankehrnvsDytPlsla~----Sggy~~iI~~llS~GseIn 884 (2131)
T KOG4369|consen 819 QSDRTKDTMLSLACSGGRTRVVELLLNA------GANKEHRNVSDYTPLSLAR----SGGYTKIIHALLSSGSEIN 884 (2131)
T ss_pred hcccccCceEEEecCCCcchHHHHHHHh------hccccccchhhcCchhhhc----CcchHHHHHHHhhcccccc
Confidence 6677788888888877777 77888773 7777777888888888873 3556778888888886544
No 104
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=94.15 E-value=0.023 Score=60.49 Aligned_cols=69 Identities=22% Similarity=0.189 Sum_probs=55.1
Q ss_pred ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCcccccc-CCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC-CCC
Q 023199 21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAI-NHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM-RDD 97 (286)
Q Consensus 21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~-N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~-~~l 97 (286)
.|+.|-+||.+|+-.|+. +|+.|+++ .+++++. |+.+.|+|-+| +..+..+.+++|+.+|++.. +.+
T Consensus 786 rdkkgf~plImaatagh~tvV~~llk~------ha~veaQsdrtkdt~lSla----csggr~~vvelLl~~gankehrnv 855 (2131)
T KOG4369|consen 786 RDKKGFVPLIMAATAGHITVVQDLLKA------HADVEAQSDRTKDTMLSLA----CSGGRTRVVELLLNAGANKEHRNV 855 (2131)
T ss_pred cccccchhhhhhcccCchHHHHHHHhh------hhhhhhhcccccCceEEEe----cCCCcchHHHHHHHhhccccccch
Confidence 789999999999988888 99999984 6777665 57889999998 44667899999999998753 334
Q ss_pred CC
Q 023199 98 NQ 99 (286)
Q Consensus 98 ~~ 99 (286)
.+
T Consensus 856 sD 857 (2131)
T KOG4369|consen 856 SD 857 (2131)
T ss_pred hh
Confidence 33
No 105
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.10 E-value=0.061 Score=52.82 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=41.2
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHh
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLL 71 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~ 71 (286)
..|.--.|+||+|+..|.. ++.+||+. ++|..++|..|.||.+++.
T Consensus 425 ~~~~ltsT~LH~aa~qg~~k~v~~~Lee------g~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 425 ANDYLTSTFLHYAAAQGARKCVKYFLEE------GCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred ccccccchHHHHHHhcchHHHHHHHHHh------cCCchhcccCCCCcccccc
Confidence 4556678999999999999 99999994 8999999999999999983
No 106
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=93.60 E-value=0.14 Score=48.92 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=54.1
Q ss_pred ChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCCC
Q 023199 26 DYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMRD 96 (286)
Q Consensus 26 nTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~~ 96 (286)
+--|.-|++.|+. .+++|++ .|+++|..|+....||-+|.. .||...+++|++.||-..++
T Consensus 37 f~elceacR~GD~d~v~~LVe------tgvnVN~vD~fD~spL~lAsL----cGHe~vvklLLenGAiC~rd 98 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVE------TGVNVNAVDRFDSSPLYLASL----CGHEDVVKLLLENGAICSRD 98 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHH------hCCCcchhhcccccHHHHHHH----cCcHHHHHHHHHcCCccccc
Confidence 4567889999999 9999999 599999999999999999965 67889999999999876654
No 107
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=93.51 E-value=0.14 Score=50.35 Aligned_cols=66 Identities=21% Similarity=0.089 Sum_probs=52.0
Q ss_pred ccCCCChH------HHHHHHhCcH-HHHHHhhCccccccCccccccC-CCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199 21 YDLSSDYK------EQLKTWIHLQ-VIELLLGHQANASQGLEVNAIN-HSGVTAFDLLLISPSEAGDREIEEILRSAGAT 92 (286)
Q Consensus 21 kD~~GnTp------LHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N-~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~ 92 (286)
+|+||-|. ||-.++.++. +.--|+. .|+++|.-+ ..|.||||+|++ .|+..-+++|.-.||+
T Consensus 123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~------lGA~~N~~hpekg~TpLHvAAk----~Gq~~Q~ElL~vYGAD 192 (669)
T KOG0818|consen 123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLS------LGAQANFFHPEKGNTPLHVAAK----AGQILQAELLAVYGAD 192 (669)
T ss_pred CCcchhhHHHHHHHHHHHhhcccHHHHHHHHH------cccccCCCCcccCCchhHHHHh----ccchhhhhHHhhccCC
Confidence 56666554 8999999999 5545555 599999887 679999999965 6666778999999999
Q ss_pred CCCC
Q 023199 93 GMRD 96 (286)
Q Consensus 93 ~~~~ 96 (286)
++..
T Consensus 193 ~~a~ 196 (669)
T KOG0818|consen 193 PGAQ 196 (669)
T ss_pred CCCC
Confidence 8754
No 108
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=92.91 E-value=0.11 Score=54.84 Aligned_cols=65 Identities=17% Similarity=0.117 Sum_probs=45.0
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHH
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRS 88 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~ 88 (286)
-+|..|+||||+|+..|+. ++..|.+.++-.+.-.|....+-.|.|+-++|.. .++..+-.+|.+
T Consensus 636 i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s----~g~~gia~~lse 701 (975)
T KOG0520|consen 636 IRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA----NGHKGIAGYLSE 701 (975)
T ss_pred cccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc----ccccchHHHHhh
Confidence 5899999999999999999 9999986533322223334444569999999964 344444444443
No 109
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=91.53 E-value=0.095 Score=54.94 Aligned_cols=60 Identities=23% Similarity=0.265 Sum_probs=49.1
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA 89 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~ 89 (286)
++|..|+||||.+...|+. .+..|++ .+++.++.|.+|++|+++|... .+.++.-++...
T Consensus 684 ~~d~~g~~plh~~~~~g~~~~~~~ll~------~~a~~~a~~~~~~~~l~~a~~~----~~~d~~~l~~l~ 744 (785)
T KOG0521|consen 684 ALDSKGRTPLHHATASGHTSIACLLLK------RGADPNAFDPDGKLPLDIAMEA----ANADIVLLLRLA 744 (785)
T ss_pred hhhccCCCcchhhhhhcccchhhhhcc------ccccccccCccCcchhhHHhhh----ccccHHHHHhhh
Confidence 6899999999999999999 8888888 5999999999999999999652 334444444433
No 110
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=91.25 E-value=0.17 Score=49.63 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=52.9
Q ss_pred ccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc-CCCCCCC
Q 023199 21 YDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA-GATGMRD 96 (286)
Q Consensus 21 kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~-Ga~~~~~ 96 (286)
.+.++..++..|++.|+. ..+-+.- .+.|++.+|.+.+|+||+|+ .+++.+++++|+.+ +.++.+.
T Consensus 502 ~~~~~~i~~~~aa~~GD~~alrRf~l------~g~D~~~~DyD~RTaLHvAA----aEG~v~v~kfl~~~~kv~~~~k 569 (622)
T KOG0506|consen 502 RENDTVINVMYAAKNGDLSALRRFAL------QGMDLETKDYDDRTALHVAA----AEGHVEVVKFLLNACKVDPDPK 569 (622)
T ss_pred ccccchhhhhhhhhcCCHHHHHHHHH------hcccccccccccchhheeec----ccCceeHHHHHHHHHcCCCChh
Confidence 567888899999999999 6655443 49999999999999999995 47888999998864 5544443
No 111
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=90.87 E-value=0.3 Score=48.35 Aligned_cols=59 Identities=24% Similarity=0.188 Sum_probs=47.4
Q ss_pred hHHHHHHHhCcH--HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 27 YKEQLKTWIHLQ--VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 27 TpLHlAa~~~~~--iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
-|||.++..... ..+.|... ....++.+|-.|+||||+|+. .++.+..+.|+.+||...
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~-----~~~~id~~D~~g~TpLhlAV~----Lg~~~~a~~Ll~a~Adv~ 82 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAK-----VSLVIDRRDPPGRTPLHLAVR----LGHVEAARILLSAGADVS 82 (560)
T ss_pred cccchhhhccchhhHHHHHhhh-----hhceeccccCCCCccHHHHHH----hcCHHHHHHHHhcCCCcc
Confidence 459999988877 45545543 467889999999999999975 678899999999998654
No 112
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=89.96 E-value=0.45 Score=47.71 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=50.2
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHH
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRS 88 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~ 88 (286)
..|..|.|+||-|+..++. +..+|++ .|+.+.-.|..|.||-.-|.+ .++.++..+|.+
T Consensus 929 ~~de~get~lhkaa~~~~r~vc~~lvd------agasl~ktd~kg~tp~eraqq----a~d~dlaayle~ 988 (1004)
T KOG0782|consen 929 MADETGETALHKAACQRNRAVCQLLVD------AGASLRKTDSKGKTPQERAQQ----AGDPDLAAYLES 988 (1004)
T ss_pred HHhhhhhHHHHHHHHhcchHHHHHHHh------cchhheecccCCCChHHHHHh----cCCchHHHHHhh
Confidence 5688999999999999999 7788887 699999999999999999954 566777777653
No 113
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=88.11 E-value=1 Score=24.13 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCCCHHHHHhhCCCCCCcHHHHHHHHHcCCC
Q 023199 62 SGVTAFDLLLISPSEAGDREIEEILRSAGAT 92 (286)
Q Consensus 62 ~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~ 92 (286)
+|.||+|++.. .++.++++.|+..|..
T Consensus 1 ~~~~~l~~~~~----~~~~~~~~~ll~~~~~ 27 (30)
T smart00248 1 DGRTPLHLAAE----NGNLEVVKLLLDKGAD 27 (30)
T ss_pred CCCCHHHHHHH----cCCHHHHHHHHHcCCC
Confidence 47899999965 4788999999988764
No 114
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.85 E-value=1.1 Score=46.87 Aligned_cols=71 Identities=17% Similarity=0.039 Sum_probs=47.5
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCccc------------cccCcccc------------------ccCCCCCCHHH
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQAN------------ASQGLEVN------------------AINHSGVTAFD 68 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~~~------------~~~~v~vn------------------~~N~~G~TaLd 68 (286)
..|.-|.++||+|..+.+. ++++|++++-. ....+++. ..-..+-||+.
T Consensus 57 c~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPli 136 (822)
T KOG3609|consen 57 CRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLM 136 (822)
T ss_pred ccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHH
Confidence 4677888888888877777 77777775200 00011211 11234679999
Q ss_pred HHhhCCCCCCcHHHHHHHHHcCCCCC
Q 023199 69 LLLISPSEAGDREIEEILRSAGATGM 94 (286)
Q Consensus 69 iA~~~~~~~~~~ei~~~L~~~Ga~~~ 94 (286)
+|++ .++.||+++|+..|+...
T Consensus 137 LAAh----~NnyEil~~Ll~kg~~i~ 158 (822)
T KOG3609|consen 137 LAAH----LNNFEILQCLLTRGHCIP 158 (822)
T ss_pred HHHH----hcchHHHHHHHHcCCCCC
Confidence 9975 568899999999987653
No 115
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.64 E-value=6.8 Score=29.63 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhHh
Q 023199 192 LYMFFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDTAV 236 (286)
Q Consensus 192 ~F~~~nt~af~~S~~~i~~l~~~~p~~~~l~~~~~~m~~ay~~~~ 236 (286)
+++++|+.||..|+.+..+=++-.|...+.. ...+|...|+.|.
T Consensus 15 awi~f~waafg~s~~m~~~gi~~lPVD~w~K-Gy~~MG~lfltgS 58 (95)
T COG4298 15 AWIMFNWAAFGASYFMLGLGIWLLPVDLWTK-GYWAMGILFLTGS 58 (95)
T ss_pred hhHhHHHHHHHHHHHHHHHHhheechHHHHH-HHHHHHHHHHhcc
Confidence 4678999999999999888777777654321 3445666666653
No 116
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=66.45 E-value=11 Score=34.08 Aligned_cols=48 Identities=25% Similarity=0.280 Sum_probs=36.8
Q ss_pred HHHHHhhCccccccCcccccc---CCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 39 VIELLLGHQANASQGLEVNAI---NHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 39 iv~~LL~~~~~~~~~v~vn~~---N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
+.++++++ .=+++|.. -+.|.|-||-|.+ +++.|+..+|++.||-+++
T Consensus 232 vL~~Fi~~-----Glv~vN~~F~~~NSGdtMLDNA~K----y~~~emi~~Llk~GA~~~k 282 (284)
T PF06128_consen 232 VLEYFINR-----GLVDVNKKFQKVNSGDTMLDNAMK----YKNSEMIAFLLKYGAISGK 282 (284)
T ss_pred HHHHHHhc-----cccccchhhhccCCcchHHHhHHh----cCcHHHHHHHHHcCccccC
Confidence 55566654 33677754 4789999999965 7788999999999997765
No 117
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=66.40 E-value=20 Score=35.27 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=22.8
Q ss_pred HHHHH-HHHHH--HHHHHHHHhhhhcccccccCccc
Q 023199 250 LTISI-LPLAI--GLTAYCFRLQQKRQRTERTATVE 282 (286)
Q Consensus 250 ~~~~~-~~~~~--~l~~~~~~~~~~r~~~~~~~~~~ 282 (286)
.+++| +|+.+ .|+++++|..++||++.+-..++
T Consensus 198 AiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s 233 (503)
T KOG4220|consen 198 AIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQAS 233 (503)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 44444 66666 66799999999998776554443
No 118
>PLN00148 potassium transporter; Provisional
Probab=65.84 E-value=54 Score=34.68 Aligned_cols=111 Identities=14% Similarity=0.022 Sum_probs=60.4
Q ss_pred CCCccchhhhHHHHHHHHHhhhhhccccCCCCCcCCCCCCCCCCCCCCcccccCccccchhHHHHHHHHHHHHHHHHHH-
Q 023199 131 RDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMIN- 209 (286)
Q Consensus 131 ~~~~~~~~~~l~vvAtLiATvtf~a~~~pPGG~~~~~~~~~~~~~~~G~~vl~~~~~~~f~~F~~~nt~af~~S~~~i~- 209 (286)
.+..--..|++|.+++++.|+.|+..-+.=+- =|-+|.. +-+++++.+.+
T Consensus 390 GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~A--------------YGiAV~~---------------vM~iTT~L~~lV 440 (785)
T PLN00148 390 GQIYIPEINWILMILTLAVTIGFRDTTLIGNA--------------YGLACMT---------------VMFITTFLMALV 440 (785)
T ss_pred CceeeHHHHHHHHHHHHHhheeeccchhHHHh--------------hhhheee---------------HHHHHHHHHHHH
Confidence 44555577999999999999998743222111 1333221 11222222222
Q ss_pred -HHhhchhhHH--HHHHHHHHHHHHHHhHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023199 210 -ILTTKFPLQF--ELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQKR 272 (286)
Q Consensus 210 -~l~~~~p~~~--~l~~~~~~m~~ay~~~~~~i~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r 272 (286)
.+.|+.+... ...+.+.+.=+.|.++...=.|++-|+..++.++ .+.++++|+.=++.+.+
T Consensus 441 ~~~~W~~~~~~~~~f~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~v--~~~iM~~W~~G~~~~~~ 504 (785)
T PLN00148 441 IIFVWQKSIILAALFLLFFGFIEGVYLSAALMKVPQGGWVPLVLSAI--FMSIMYIWHYGTRKKYN 504 (785)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3345544322 1223344455677777777788887775544333 34566677776664443
No 119
>PLN00151 potassium transporter; Provisional
Probab=65.46 E-value=35 Score=36.24 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=61.7
Q ss_pred CCCCccchhhhHHHHHHHHHhhhhhccccCCCCCcCCCCCCCCCCCCCCcccccCccccchhHHHHHHHHHHHHHHHHHH
Q 023199 130 GRDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMIN 209 (286)
Q Consensus 130 ~~~~~~~~~~~l~vvAtLiATvtf~a~~~pPGG~~~~~~~~~~~~~~~G~~vl~~~~~~~f~~F~~~nt~af~~S~~~i~ 209 (286)
+.+..--..|++|.+++++.|+.|+..-+.=.- -|-+|. ++-|++++.+++
T Consensus 466 ~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~A--------------YGiAV~---------------~vM~iTT~L~~l 516 (852)
T PLN00151 466 MGQIYIPVINWFLLVMCLVVVCSFRSITDIGNA--------------YGIAEV---------------GVMMVSTILVTL 516 (852)
T ss_pred CCceeeHHHHHHHHHHHHhheeeecCHHHHHHH--------------hhhhhh---------------hhhhHHHHHHHH
Confidence 334555577999999999999998743222111 132222 122233333322
Q ss_pred --HHhhchhhHH--HHHHHHHHHHHHHHhHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023199 210 --ILTTKFPLQF--ELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQKR 272 (286)
Q Consensus 210 --~l~~~~p~~~--~l~~~~~~m~~ay~~~~~~i~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r 272 (286)
.+.|+.+... ...+.+.++=+.|.++...=.|++-|+..++.++ .+.++++|+.=++.+.+
T Consensus 517 V~~~~W~~~~~~~~~f~~~F~~ie~~f~sA~l~Ki~~GGW~Pl~la~v--~~~iM~~W~yG~~~~~~ 581 (852)
T PLN00151 517 VMLLIWQTNIFLVLCFPVVFLSVELVFFSSVLSSVGDGGWIPLVFASV--FLCIMYIWNYGSKLKYQ 581 (852)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3345544322 1223344555678888777788887775544333 34667777776665443
No 120
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=62.37 E-value=11 Score=38.11 Aligned_cols=59 Identities=25% Similarity=0.153 Sum_probs=42.2
Q ss_pred HHHHHHhCcH-HHHHHhhCccccccCcccc--ccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcCCCCCC
Q 023199 29 EQLKTWIHLQ-VIELLLGHQANASQGLEVN--AINHSGVTAFDLLLISPSEAGDREIEEILRSAGATGMR 95 (286)
Q Consensus 29 LHlAa~~~~~-iv~~LL~~~~~~~~~v~vn--~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~Ga~~~~ 95 (286)
|.-|+...+. .+-+||.++ ...++| .-+.+|.||||+|.. .++..+..+|+.+|++...
T Consensus 628 Ll~A~~~~Dl~t~~lLLAhg----~~~e~~~t~~~~~grt~LHLa~~----~gnVvl~QLLiWyg~dv~~ 689 (749)
T KOG0705|consen 628 LLRAVAAEDLQTAILLLAHG----SREEVNETCGEGDGRTALHLAAR----KGNVVLAQLLIWYGVDVMA 689 (749)
T ss_pred HHHHHHHHHHHHHHHHHhcc----CchhhhccccCCCCcchhhhhhh----hcchhHHHHHHHhCcccee
Confidence 4456666677 777888762 233444 445678999999954 6788999999999986543
No 121
>PLN00149 potassium transporter; Provisional
Probab=62.00 E-value=47 Score=35.12 Aligned_cols=112 Identities=12% Similarity=0.006 Sum_probs=60.4
Q ss_pred CCCCccchhhhHHHHHHHHHhhhhhccccCCCCCcCCCCCCCCCCCCCCcccccCccccchhHHHHHHHHHHHHHHHHHH
Q 023199 130 GRDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMIN 209 (286)
Q Consensus 130 ~~~~~~~~~~~l~vvAtLiATvtf~a~~~pPGG~~~~~~~~~~~~~~~G~~vl~~~~~~~f~~F~~~nt~af~~S~~~i~ 209 (286)
+.+..--.-|++|.+++++.|+.|+..-+.=.- =|-+|. ++-|++++.+.+
T Consensus 393 ~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~A--------------YGiAV~---------------~vM~iTT~L~~l 443 (779)
T PLN00149 393 HGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNA--------------SGLAVI---------------TVMLVTTCLMSL 443 (779)
T ss_pred CCceeeHHHHHHHHHHHHhheeEecChHHHHHH--------------hhhhhe---------------hHHHHHHHHHHH
Confidence 344555577999999999999998733222111 132221 122223333322
Q ss_pred --HHhhchhhHHH--HHHHHHHHHHHHHhHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023199 210 --ILTTKFPLQFE--LQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQKR 272 (286)
Q Consensus 210 --~l~~~~p~~~~--l~~~~~~m~~ay~~~~~~i~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r 272 (286)
.+.|+.+.... ..+.+.+.=+.|.++...=.|++-|+..++.++ .+.++++|+.=++.+.+
T Consensus 444 v~~~~W~~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v--~~~iM~~W~~G~~~~~~ 508 (779)
T PLN00149 444 VIVLCWHKSVLLAICFIFFFGTIEALYFSASLIKFLEGAWVPIALSFI--FLLVMYVWHYGTLKRYE 508 (779)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 23454432221 222334455677777777788887775544333 34667777776665443
No 122
>PLN00150 potassium ion transporter family protein; Provisional
Probab=59.77 E-value=52 Score=34.80 Aligned_cols=112 Identities=13% Similarity=-0.011 Sum_probs=61.0
Q ss_pred CCCCccchhhhHHHHHHHHHhhhhhccccCCCCCcCCCCCCCCCCCCCCcccccCccccchhHHHHHHHHHHHHHHHHHH
Q 023199 130 GRDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMIN 209 (286)
Q Consensus 130 ~~~~~~~~~~~l~vvAtLiATvtf~a~~~pPGG~~~~~~~~~~~~~~~G~~vl~~~~~~~f~~F~~~nt~af~~S~~~i~ 209 (286)
+.+..--..|++|.+++++.|+.|+..-+.=.-| |-+|.. +-+++++.+.+
T Consensus 406 ~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AY--------------GiAV~~---------------vM~iTT~L~~~ 456 (779)
T PLN00150 406 HGQVYIPEINWILMVLCLVITAGFRDTDEIGNAY--------------GIAVVG---------------VMIITTCLMTL 456 (779)
T ss_pred CCceeeHHHHHHHHHHHHhheEEecChHHHHHHh--------------hhheeh---------------hhHHHHHHHHH
Confidence 3445556779999999999999987433222111 333221 11222222222
Q ss_pred --HHhhchhhHH--HHHHHHHHHHHHHHhHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023199 210 --ILTTKFPLQF--ELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQKR 272 (286)
Q Consensus 210 --~l~~~~p~~~--~l~~~~~~m~~ay~~~~~~i~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r 272 (286)
.+.|+.+... ...+.+.+.=+.|.++...=.|++-|+..++.++ .+.++++|+.=++.+.+
T Consensus 457 v~~~~W~~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v--~~~iM~~W~~G~~~~~~ 521 (779)
T PLN00150 457 VMIIIWRKHILLALLFFTVFAIIEGIYFSAVLFKVTQGGWVPLVIAAV--FGTVMYTWHYGTRKRYL 521 (779)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 2345444322 1223344455677777777788887775544333 34666777776665444
No 123
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=57.13 E-value=21 Score=34.51 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=26.0
Q ss_pred cccCCCChHHHHHHHhCcH-HHHHHhhCc
Q 023199 20 SYDLSSDYKEQLKTWIHLQ-VIELLLGHQ 47 (286)
Q Consensus 20 ~kD~~GnTpLHlAa~~~~~-iv~~LL~~~ 47 (286)
+.|...++||.+|+-.||. ++++|++++
T Consensus 64 ~vD~fD~spL~lAsLcGHe~vvklLLenG 92 (516)
T KOG0511|consen 64 AVDRFDSSPLYLASLCGHEDVVKLLLENG 92 (516)
T ss_pred hhhcccccHHHHHHHcCcHHHHHHHHHcC
Confidence 6899999999999999999 999999963
No 124
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=53.03 E-value=9.8 Score=33.43 Aligned_cols=37 Identities=27% Similarity=0.147 Sum_probs=31.3
Q ss_pred CccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHcC-CCC
Q 023199 53 GLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSAG-ATG 93 (286)
Q Consensus 53 ~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~G-a~~ 93 (286)
+.++|..|..|+||+..|. ..+..+.+.+|+..| +..
T Consensus 2 e~~in~rD~fgWTalmcaa----~eg~~eavsyllgrg~a~v 39 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAA----MEGSNEAVSYLLGRGVAFV 39 (223)
T ss_pred CCCccchhhhcchHHHHHh----hhcchhHHHHHhccCcccc
Confidence 5689999999999999995 477889999999998 443
No 125
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=52.60 E-value=48 Score=30.54 Aligned_cols=53 Identities=8% Similarity=0.054 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhh----ccCChh-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 023199 218 QFELQLCFLAMNFTYDTAVISI----APDEVK-LFVILTISILPLAIGLTAYCFRLQQ 270 (286)
Q Consensus 218 ~~~l~~~~~~m~~ay~~~~~~i----~p~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 270 (286)
+.+-.++++.+..++++|+|.+ .|...| +...+..+++.+...+...++||.+
T Consensus 259 k~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~ 316 (318)
T TIGR00383 259 KILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKG 316 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445567778888999998864 675443 2222222333333334455555544
No 126
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=52.02 E-value=1.4e+02 Score=27.89 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=20.1
Q ss_pred hhchhhHHHHHHHHHHHHHHHHhHhhhh
Q 023199 212 TTKFPLQFELQLCFLAMNFTYDTAVISI 239 (286)
Q Consensus 212 ~~~~p~~~~l~~~~~~m~~ay~~~~~~i 239 (286)
.+..|+|....++++.+.++++.+.+.+
T Consensus 226 ~s~~Plr~~~~~g~~~~~~~~~~~~~~~ 253 (325)
T PRK10714 226 LTTTPLRLLSLLGSIIAIGGFSLAVLLV 253 (325)
T ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577898888888777777766665543
No 127
>PF11045 YbjM: Putative inner membrane protein of Enterobacteriaceae; InterPro: IPR020368 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=49.49 E-value=1.4e+02 Score=24.26 Aligned_cols=57 Identities=14% Similarity=-0.002 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhhccCChhH---HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023199 216 PLQFELQLCFLAMNFTYDTAVISIAPDEVKL---FVILTISILPLAIGLTAYCFRLQQKR 272 (286)
Q Consensus 216 p~~~~l~~~~~~m~~ay~~~~~~i~p~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~r 272 (286)
+...-++-+++++-+|...-.....|+...| ..++.++|.+...-|..-++|.+.++
T Consensus 60 rv~~pL~GAllAap~clLl~~~~~~~~rs~wQelAw~~SAvFWc~lGAL~~lf~~~l~~~ 119 (125)
T PF11045_consen 60 RVLSPLLGALLAAPVCLLLMHLWFAPSRSFWQELAWLFSAVFWCALGALLVLFLRSLLQR 119 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3334456677777777777666666666555 44455788887776666666665333
No 128
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=47.78 E-value=45 Score=25.46 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccCcc-cCCC
Q 023199 253 SILPLAIGLTAYCFRLQQKRQRTERTATV-EPQN 285 (286)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~r~~~~~~~~~-~~~~ 285 (286)
.|+.++++.++=+.++.|-|++--|---+ +|+|
T Consensus 43 iFil~VilwfvCC~kRkrsRrPIYrPvI~~~P~~ 76 (94)
T PF05393_consen 43 IFILLVILWFVCCKKRKRSRRPIYRPVIGLEPQN 76 (94)
T ss_pred HHHHHHHHHHHHHHHhhhccCCccccccccCCCc
Confidence 44445555555566555666655555555 7766
No 129
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=46.25 E-value=97 Score=32.40 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=61.2
Q ss_pred CCCCccchhhhHHHHHHHHHhhhhhccccCCCCCcCCCCCCCCCCCCCCcccccCccccchhHHHHHHHHHHH-HHHHHH
Q 023199 130 GRDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFK-LSLQMI 208 (286)
Q Consensus 130 ~~~~~~~~~~~l~vvAtLiATvtf~a~~~pPGG~~~~~~~~~~~~~~~G~~vl~~~~~~~f~~F~~~nt~af~-~S~~~i 208 (286)
+.+..--.-|+++.+++++.++.|+..=+.=+-| | ++-|..|+ +++.+.
T Consensus 360 ~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AY--------------G----------------iaVt~tM~iTT~L~~ 409 (688)
T TIGR00794 360 HGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAY--------------G----------------IAVTGTFLVTTCLMT 409 (688)
T ss_pred CCceeeHHHHHHHHHHHHheeEEecChHHHHHHh--------------h----------------hhhhhhhHHHHHHHH
Confidence 3445556789999999999999987433222211 2 23322222 333332
Q ss_pred HHH--hhchhhHH--HHHHHHHHHHHHHHhHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023199 209 NIL--TTKFPLQF--ELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQKR 272 (286)
Q Consensus 209 ~~l--~~~~p~~~--~l~~~~~~m~~ay~~~~~~i~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r 272 (286)
+.+ .++.+... ...+.+..+=.+|.+|-..=.|++-|+..++.+++ +.++++|+.=|+.+.+
T Consensus 410 ~v~~~~w~~~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~i~--~~iM~~W~~G~~~~~~ 475 (688)
T TIGR00794 410 VVMTIVWKWNIYFVALFLLVFLSVELIYFSSNLDKVPEGGWFPLSLSGIF--MSVMTTWRYGRFRKLR 475 (688)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 222 34433221 12233445566777777777888877755544333 3566677776665544
No 130
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.20 E-value=32 Score=27.87 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhhhcccc
Q 023199 259 IGLTAYCFRLQQKRQRT 275 (286)
Q Consensus 259 ~~l~~~~~~~~~~r~~~ 275 (286)
++|+.+++|.++||++.
T Consensus 81 Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 81 ILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHhccCCC
Confidence 35667777777666543
No 131
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=45.11 E-value=17 Score=38.31 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=42.1
Q ss_pred CChHHHHHHHhCcH-HHHHHhhCccccccCccccccCCCCCCHHHHHhhCCCCCCcHHHHHHHHHc
Q 023199 25 SDYKEQLKTWIHLQ-VIELLLGHQANASQGLEVNAINHSGVTAFDLLLISPSEAGDREIEEILRSA 89 (286)
Q Consensus 25 GnTpLHlAa~~~~~-iv~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~~~~~~~~~ei~~~L~~~ 89 (286)
+.--.-.|+++|+. .|+..+..... ...++|-+|--|.++|++|.. ..+.++.++|...
T Consensus 25 ~e~~fL~a~E~gd~~~V~k~l~~~~~--~~lninc~d~lGr~al~iai~----nenle~~eLLl~~ 84 (822)
T KOG3609|consen 25 GEKGFLLAHENGDVPLVAKALEYKAV--SKLNINCRDPLGRLALHIAID----NENLELQELLLDT 84 (822)
T ss_pred hhHHHHHHHHcCChHHHHHHHHhccc--cccchhccChHhhhceecccc----cccHHHHHHHhcC
Confidence 33445689999999 88877765222 357899999999999999964 3445555555554
No 132
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=44.68 E-value=8.1 Score=31.41 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=7.4
Q ss_pred HHHHHHHHH-HHHHHHHh
Q 023199 252 ISILPLAIG-LTAYCFRL 268 (286)
Q Consensus 252 ~~~~~~~~~-l~~~~~~~ 268 (286)
..++.+... |.|...++
T Consensus 90 ~GLmlL~~~alcW~~~~r 107 (129)
T PF15099_consen 90 LGLMLLACSALCWKPIIR 107 (129)
T ss_pred HHHHHHHhhhheehhhhH
Confidence 334334433 55555444
No 133
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=44.42 E-value=80 Score=25.43 Aligned_cols=8 Identities=13% Similarity=0.207 Sum_probs=4.4
Q ss_pred CCcccccC
Q 023199 177 AGESIWGS 184 (286)
Q Consensus 177 ~G~~vl~~ 184 (286)
.|+.|.-.
T Consensus 54 ~GD~V~v~ 61 (135)
T PF04246_consen 54 VGDRVEVE 61 (135)
T ss_pred CCCEEEEE
Confidence 56665443
No 134
>PRK10847 hypothetical protein; Provisional
Probab=43.62 E-value=79 Score=27.83 Aligned_cols=13 Identities=15% Similarity=0.616 Sum_probs=6.7
Q ss_pred cchhHHHHHHHHH
Q 023199 188 IAFCLYMFFNSLG 200 (286)
Q Consensus 188 ~~f~~F~~~nt~a 200 (286)
..+.-|+++|.++
T Consensus 151 m~~~~F~~~~~lg 163 (219)
T PRK10847 151 MSYRHFAAYNVIG 163 (219)
T ss_pred CChHHHHHHHHHH
Confidence 3455555555554
No 135
>PRK09546 zntB zinc transporter; Reviewed
Probab=42.93 E-value=73 Score=29.67 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhHhhhh----ccCCh
Q 023199 221 LQLCFLAMNFTYDTAVISI----APDEV 244 (286)
Q Consensus 221 l~~~~~~m~~ay~~~~~~i----~p~~~ 244 (286)
-.++.+.+-.+|++|+|-+ .|-..
T Consensus 268 tilt~IflPlT~IaGiyGMNf~~mPel~ 295 (324)
T PRK09546 268 SLMAMVFLPTTFLTGLFGVNLGGIPGGG 295 (324)
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcC
Confidence 3456667778999888864 67543
No 136
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=42.56 E-value=1.2e+02 Score=26.61 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=11.5
Q ss_pred ccchhHHHHHHHHHHHH
Q 023199 187 TIAFCLYMFFNSLGFKL 203 (286)
Q Consensus 187 ~~~f~~F~~~nt~af~~ 203 (286)
+..+.-|.+.|.++-..
T Consensus 136 ~m~~~~F~~~n~~ga~i 152 (208)
T COG0586 136 KMPLRRFLLYNILGALL 152 (208)
T ss_pred cCChHHHHHHHHHHHHH
Confidence 34577788888877443
No 137
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=38.21 E-value=73 Score=29.76 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhh----ccCCh-hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023199 219 FELQLCFLAMNFTYDTAVISI----APDEV-KLFVILTISILPLAIGLTAYCFRLQQ 270 (286)
Q Consensus 219 ~~l~~~~~~m~~ay~~~~~~i----~p~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~ 270 (286)
.+-.++++.+..++++|+|.+ .|--- .++..++.+++.+...++..++||.+
T Consensus 264 ~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~~~frrk~ 320 (322)
T COG0598 264 ILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLYLYFRRKG 320 (322)
T ss_pred HHHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344567777888999988865 56332 22222222333333344444554543
No 138
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=37.70 E-value=2.3e+02 Score=23.30 Aligned_cols=18 Identities=22% Similarity=0.039 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhhhccc
Q 023199 257 LAIGLTAYCFRLQQKRQR 274 (286)
Q Consensus 257 ~~~~l~~~~~~~~~~r~~ 274 (286)
+.+.+.+++.+++.++++
T Consensus 60 ~~~~l~rr~~~~~~~~~~ 77 (140)
T COG1585 60 LLALLGRRFVRRRLKPSD 77 (140)
T ss_pred HHHHHHHHHHhhccCCcc
Confidence 344566777766544433
No 139
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=37.58 E-value=1.6e+02 Score=27.11 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=5.8
Q ss_pred CCCcccccC
Q 023199 176 IAGESIWGS 184 (286)
Q Consensus 176 ~~G~~vl~~ 184 (286)
..|.|.+..
T Consensus 127 ~~G~~~~~~ 135 (333)
T PF03176_consen 127 VTGSPAIAA 135 (333)
T ss_pred EECHHHHHH
Confidence 467776654
No 140
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=36.92 E-value=1.1e+02 Score=28.76 Aligned_cols=54 Identities=11% Similarity=-0.040 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhhh----ccCChh-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023199 218 QFELQLCFLAMNFTYDTAVISI----APDEVK-LFVILTISILPLAIGLTAYCFRLQQK 271 (286)
Q Consensus 218 ~~~l~~~~~~m~~ay~~~~~~i----~p~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (286)
|.+-.++++.|..++++|+|.+ .|...| +...++.+++.+...+...++||.+|
T Consensus 257 k~lTv~s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 257 KIFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4445567777888888888864 564433 22222223333333334445655443
No 141
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=36.73 E-value=2.7e+02 Score=25.31 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023199 247 FVILTISILPLAIGLTAYCFRL 268 (286)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~ 268 (286)
..+.+++.+.+.+.+++..++.
T Consensus 76 ~l~~~Gglwy~~lsl~~~~l~p 97 (284)
T PF12805_consen 76 LLFLAGGLWYLLLSLLWWPLRP 97 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 3445566666666666655544
No 142
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=36.66 E-value=2.8e+02 Score=24.72 Aligned_cols=23 Identities=17% Similarity=0.028 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcccc
Q 023199 253 SILPLAIGLTAYCFRLQQKRQRT 275 (286)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~r~~~ 275 (286)
+++++.+++.....|+.++|-+.
T Consensus 50 ~~~~villlfiDsvr~i~~~~~~ 72 (216)
T KOG1962|consen 50 TTMIVILLLFIDSVRRIQKYVSE 72 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 44444555555566665555443
No 143
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=35.83 E-value=1e+02 Score=20.21 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=17.9
Q ss_pred CChhHHHHHHH-HHHHHHHHHHHHHHHhhhhc
Q 023199 242 DEVKLFVILTI-SILPLAIGLTAYCFRLQQKR 272 (286)
Q Consensus 242 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~r 272 (286)
+++.+.++++. ..+.+.+.+.+++.||+++-
T Consensus 9 s~vGL~Sl~vI~~~igm~~~~~~~F~~k~~~~ 40 (42)
T PF11346_consen 9 SDVGLMSLIVIVFTIGMGVFFIRYFIRKMKED 40 (42)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 44444444333 33445567788999987653
No 144
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=33.19 E-value=1.6e+02 Score=29.94 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=62.1
Q ss_pred CCCccchhhhHHHHHHHHHhhhhhccccCCCCCcCCCCCCCCCCCCCCcccccCccccchhHHHHHHHHHHHHHHHH-HH
Q 023199 131 RDSPGETRSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQM-IN 209 (286)
Q Consensus 131 ~~~~~~~~~~l~vvAtLiATvtf~a~~~pPGG~~~~~~~~~~~~~~~G~~vl~~~~~~~f~~F~~~nt~af~~S~~~-i~ 209 (286)
.+..--.-|+++.+++++.++.|+..=+ ++ .+|=++-|..|+..... .+
T Consensus 324 GQIYIP~vNw~L~i~~i~vvl~F~~S~~-----------------------la-------~AYGiAVt~tM~iTT~L~~~ 373 (534)
T PF02705_consen 324 GQIYIPEVNWLLMIGVIAVVLGFRSSSN-----------------------LA-------AAYGIAVTGTMLITTILLFL 373 (534)
T ss_pred CcEechHHHHHHHHHHHhhheEECChHH-----------------------HH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3445567799999999999999872110 11 12334555544433222 22
Q ss_pred H--HhhchhhHH--HHHHHHHHHHHHHHhHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023199 210 I--LTTKFPLQF--ELQLCFLAMNFTYDTAVISIAPDEVKLFVILTISILPLAIGLTAYCFRLQQKRQ 273 (286)
Q Consensus 210 ~--l~~~~p~~~--~l~~~~~~m~~ay~~~~~~i~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~ 273 (286)
. ..++.+... .....+..+=++|.++-..=.|++-|+..++.++ .+.++++|+.=|+.+.+.
T Consensus 374 v~~~~w~~~~~~~~~~~~~fl~id~~ff~anl~K~~~GGW~pl~ia~~--l~~iM~tW~~G~~~~~~~ 439 (534)
T PF02705_consen 374 VMRRVWKWPLWLALLFFLFFLVIDLLFFSANLLKFPHGGWFPLLIAAV--LFTIMYTWRRGRKLLYEF 439 (534)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 2 233333322 2233444555677777777778887775544333 346677777776655443
No 145
>KOG4026 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.41 E-value=3.7e+02 Score=23.79 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHhhhhhccccCCCCCcCCCCC-CC---------------CCCCCCCcccccCccccchhHHHHHHHHHH
Q 023199 138 RSSLLVVAALVATTTFQFCVNPPGGTWQDNST-PS---------------SKAHIAGESIWGSTNTIAFCLYMFFNSLGF 201 (286)
Q Consensus 138 ~~~l~vvAtLiATvtf~a~~~pPGG~~~~~~~-~~---------------~~~~~~G~~vl~~~~~~~f~~F~~~nt~af 201 (286)
.+.+=..-++.++|.+..+|--|=..+.+... ++ +-....|-+-........|++-..+..+||
T Consensus 9 ~gviW~l~t~c~a~l~~v~fi~P~Wig~~~~~~~g~fGl~~~C~~~~~~~~~~~~~~~~~~~~ips~~~~~a~f~vlla~ 88 (207)
T KOG4026|consen 9 VGVIWALCTICFAVLFMVAFIQPYWIGDSVNGKPGSFGLFTYCVGPVLPGSLECRGRLASFSSIPSNEFKLAAFFVLLAF 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceeccCCcCCCCccccceeeccCCCCCCcccccCCccccccCCcHHHHHHHHHHHHHH
Confidence 34555667788889999999888554433221 10 000111113333334567888888888888
Q ss_pred HHHHHHHHHH
Q 023199 202 KLSLQMINIL 211 (286)
Q Consensus 202 ~~S~~~i~~l 211 (286)
..++..++.+
T Consensus 89 ~Lill~i~~~ 98 (207)
T KOG4026|consen 89 VLILLLIVFL 98 (207)
T ss_pred HHHHHHHHHH
Confidence 8887555443
No 146
>COG2322 Predicted membrane protein [Function unknown]
Probab=28.72 E-value=3.8e+02 Score=23.05 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHhhhhhccccCCCCCcCCCCCCCCCCCCCCcccccCccccchhHHHHHHHHHHHHHHHHHHHHhhchhh
Q 023199 138 RSSLLVVAALVATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFPL 217 (286)
Q Consensus 138 ~~~l~vvAtLiATvtf~a~~~pPGG~~~~~~~~~~~~~~~G~~vl~~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~p~ 217 (286)
..+.+.+|.++..++=--++.||| -|-++ .+-+++.. +=.++|+++|.+=++.....-.|---
T Consensus 11 ~~~vl~~a~va~~~~av~~~~P~g--~~~~~--------~~v~i~p~-------lnai~~~~s~~~llag~~~Ikrg~i~ 73 (177)
T COG2322 11 LAAVLGLASVAVVVIAVLAFSPAG--PQADA--------FNVEILPM-------LNAIFNSLSFIFLLAGWRLIKRGNIE 73 (177)
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCC--CCCCc--------cCchhhhh-------HHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 567777777777777778888888 23221 23333322 23467777766555544444444322
Q ss_pred H--HHHHHHH---HHHHHHHHhHhhhhccC
Q 023199 218 Q--FELQLCF---LAMNFTYDTAVISIAPD 242 (286)
Q Consensus 218 ~--~~l~~~~---~~m~~ay~~~~~~i~p~ 242 (286)
+ ..|..+. +...+.|+.=.....++
T Consensus 74 ~Hk~aMltA~~l~l~FlvlYltr~~l~~~t 103 (177)
T COG2322 74 KHKRAMLTAFTLALVFLVLYLTRHGLGGET 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 2 2344333 23556666644444333
No 147
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=26.96 E-value=3.6e+02 Score=25.64 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHhHhh--hhccCChhH-HHHHHHHHHHHHHHHHH
Q 023199 188 IAFCLYMFFNSLGFKLSLQMINILTTK-FPLQFELQLCFLAMNFTYDTAVI--SIAPDEVKL-FVILTISILPLAIGLTA 263 (286)
Q Consensus 188 ~~f~~F~~~nt~af~~S~~~i~~l~~~-~p~~~~l~~~~~~m~~ay~~~~~--~i~p~~~~~-~~~~~~~~~~~~~~l~~ 263 (286)
..|-.||.+..++ +|+..= ++... ......+++.+.....+++.-+. .++|...+. ..++.-..+-.-+-+.+
T Consensus 286 fiFatFMlASmLG--SSla~R-l~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw 362 (454)
T KOG4332|consen 286 FIFATFMLASMLG--SSLASR-LLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW 362 (454)
T ss_pred hHHHHHHHHHHHh--hHHHHH-HHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence 3455566555443 333322 33333 33445566666665555555433 367776544 22222122223456667
Q ss_pred HHHHhhhhc
Q 023199 264 YCFRLQQKR 272 (286)
Q Consensus 264 ~~~~~~~~r 272 (286)
..+.|++.+
T Consensus 363 PSimkmRsq 371 (454)
T KOG4332|consen 363 PSIMKMRSQ 371 (454)
T ss_pred hHHHHHHHh
Confidence 777776555
No 148
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=26.89 E-value=2.2e+02 Score=21.70 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhchhhHHH-------HHHHH--HHHHHHHHhHhhhhccCChh----HHHHHHHHHHHHHHHHHHH
Q 023199 198 SLGFKLSLQMINILTTKFPLQFE-------LQLCF--LAMNFTYDTAVISIAPDEVK----LFVILTISILPLAIGLTAY 264 (286)
Q Consensus 198 t~af~~S~~~i~~l~~~~p~~~~-------l~~~~--~~m~~ay~~~~~~i~p~~~~----~~~~~~~~~~~~~~~l~~~ 264 (286)
.+|+.-.+..++++.-+.|+|+. -.++. ..+.++|+.....+.....| +...++++++|+..+...+
T Consensus 8 v~a~~Egisll~Ll~iamplKy~~~~~~~v~~~G~iHG~lF~~Yl~~~~~~~~~~rW~~~~~~~~llas~iPfg~f~~er 87 (92)
T PF12823_consen 8 VIAILEGISLLLLLFIAMPLKYLAGNPEAVKIIGPIHGFLFMLYLVAALDLASKYRWSLKRTLLALLASVIPFGTFWFER 87 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhcchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHcccccHHHHHH
Confidence 34555444445444455555542 11111 12455666665555443332 2445567888888877776
Q ss_pred HHHh
Q 023199 265 CFRL 268 (286)
Q Consensus 265 ~~~~ 268 (286)
..+|
T Consensus 88 ~~~r 91 (92)
T PF12823_consen 88 WLRR 91 (92)
T ss_pred HHhc
Confidence 6654
No 149
>PF15106 TMEM156: TMEM156 protein family
Probab=26.75 E-value=1e+02 Score=27.38 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=19.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHh
Q 023199 243 EVKLFVILTISILPLAIGLTAYCFRL 268 (286)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (286)
...|+++++++|++++++.+.+++..
T Consensus 175 KITWYvLVllVfiflii~iI~KIle~ 200 (226)
T PF15106_consen 175 KITWYVLVLLVFIFLIILIIYKILEG 200 (226)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888887777777744
No 150
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=26.50 E-value=3.4e+02 Score=27.96 Aligned_cols=8 Identities=13% Similarity=0.364 Sum_probs=4.8
Q ss_pred CCCccccc
Q 023199 176 IAGESIWG 183 (286)
Q Consensus 176 ~~G~~vl~ 183 (286)
..|.|++.
T Consensus 177 ~~G~~~~~ 184 (719)
T TIGR00921 177 VTGSPAIN 184 (719)
T ss_pred ecCcHHHH
Confidence 35777654
No 151
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=25.88 E-value=44 Score=29.65 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=35.7
Q ss_pred cCCCChHHHHHHHhCcH-HH-HHHhhCccccccCccccccCCCCCCHHHHHhh
Q 023199 22 DLSSDYKEQLKTWIHLQ-VI-ELLLGHQANASQGLEVNAINHSGVTAFDLLLI 72 (286)
Q Consensus 22 D~~GnTpLHlAa~~~~~-iv-~~LL~~~~~~~~~v~vn~~N~~G~TaLdiA~~ 72 (286)
|.+-..|||-|++.++. ++ -|++..++- -...+|..|.+|-.+||+|..
T Consensus 219 d~kTe~~LHk~iki~REDVl~LYfie~dak--iP~~LNd~D~nG~~ALdiAL~ 269 (280)
T KOG4591|consen 219 DGKTENPLHKAIKIEREDVLFLYFIEMDAK--IPGILNDADHNGALALDIALC 269 (280)
T ss_pred cCCCcchhHHhhhccccceeeehhhhcccc--ccccccccCCCchHHHHHHHH
Confidence 55566799999999988 44 466664211 234578889999999999953
No 152
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=25.68 E-value=3.3e+02 Score=21.28 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Q 023199 195 FFNSLGFKLSLQMINILTTKFPLQFELQLCFLAMNFTYDT 234 (286)
Q Consensus 195 ~~nt~af~~S~~~i~~l~~~~p~~~~l~~~~~~m~~ay~~ 234 (286)
+.|+++++++++.+++- .+..-|+++++-+.+|+-
T Consensus 34 y~~~L~~~~~m~gl~mr-----~K~~aW~al~~s~~S~an 68 (103)
T PF03669_consen 34 YMSFLGMIFSMAGLMMR-----NKWCAWAALFFSCQSFAN 68 (103)
T ss_pred HHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHc
Confidence 56778888888777652 233456666655555443
No 153
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.39 E-value=2.4e+02 Score=23.79 Aligned_cols=12 Identities=8% Similarity=0.113 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 023199 195 FFNSLGFKLSLQ 206 (286)
Q Consensus 195 ~~nt~af~~S~~ 206 (286)
+.+.++++.+++
T Consensus 6 i~~i~~iilgil 17 (191)
T PF04156_consen 6 IISIILIILGIL 17 (191)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 154
>COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]
Probab=25.31 E-value=46 Score=32.84 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=13.5
Q ss_pred HHHHHhhhhc----ccccccCcccCCC
Q 023199 263 AYCFRLQQKR----QRTERTATVEPQN 285 (286)
Q Consensus 263 ~~~~~~~~~r----~~~~~~~~~~~~~ 285 (286)
+.|.+-...+ ||-+.+.-++-.|
T Consensus 198 R~F~~mV~sq~~l~Qra~~t~~ls~EN 224 (663)
T COG5001 198 REFSDMVQSQVTLTQRAEETRRLSDEN 224 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 5666555555 7766665555444
No 155
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=25.28 E-value=4.9e+02 Score=23.24 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=30.8
Q ss_pred HhhhhhccccCCCCCcCCCCCCCCCCCCCCcccccCccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 023199 149 ATTTFQFCVNPPGGTWQDNSTPSSKAHIAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTT 213 (286)
Q Consensus 149 ATvtf~a~~~pPGG~~~~~~~~~~~~~~~G~~vl~~~~~~~f~~F~~~nt~af~~S~~~i~~l~~ 213 (286)
.+.+|+|-++|-=|+.| .| ..+|..|++.--.-|.+.+.+++.+..
T Consensus 104 ig~sf~AlltPDl~~~~-------------~p------~l~~~lffitH~svfls~v~~~vhfre 149 (236)
T COG5522 104 IGISFMALLTPDLQYLQ-------------VP------WLEFLLFFITHISVFLSAVILIVHFRE 149 (236)
T ss_pred hhHHHHHHHcCcccccc-------------ch------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45589999998776633 22 356888888877777766666655443
No 156
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=25.05 E-value=7.3e+02 Score=25.13 Aligned_cols=17 Identities=6% Similarity=0.380 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023199 218 QFELQLCFLAMNFTYDT 234 (286)
Q Consensus 218 ~~~l~~~~~~m~~ay~~ 234 (286)
|..+++++.+.-..|++
T Consensus 420 rw~L~~~~~~~Plp~iA 436 (514)
T PRK15035 420 RWVLKMALWSLPLPWIA 436 (514)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 44566666665555544
No 157
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). There are several classes of these bacterial proteins: they include bacteriorhodopsin and archaerhodopsin, which are light-driven proton pumps; halorhodopsin, a light-driven chloride pump; and sensory rhodopsin, which mediates both photoattractant (in the red) and photophobic (in the UV) responses.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 3QBI_B 3QBK_D 3QBL_D 3QBG_B 3AM6_D 1UAZ_B 1E12_A 2JAF_A 2JAG_A 3UG9_A ....
Probab=24.49 E-value=3e+02 Score=24.05 Aligned_cols=59 Identities=15% Similarity=0.033 Sum_probs=27.8
Q ss_pred HHHHHHhhchhhHHH--HHHHHHHHHHHHHhHhhhhccCChhH--HHHHHHHHHHHHHHHHHHHH
Q 023199 206 QMINILTTKFPLQFE--LQLCFLAMNFTYDTAVISIAPDEVKL--FVILTISILPLAIGLTAYCF 266 (286)
Q Consensus 206 ~~i~~l~~~~p~~~~--l~~~~~~m~~ay~~~~~~i~p~~~~~--~~~~~~~~~~~~~~l~~~~~ 266 (286)
...+.++.|.+.+.. +..+-..|+++...|-.. +....+ +.+-...++.+...+.....
T Consensus 85 l~~L~~lag~~~~~~~~~i~~~~~mi~~g~~g~~~--~~~~kw~~~~~~~~~~~~i~y~l~~~~~ 147 (222)
T PF01036_consen 85 LLALALLAGASRRLLLFLIAADVVMIVTGLVGALV--PGTYKWGWFLVSCAAFLYIVYLLFGPLR 147 (222)
T ss_dssp HHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677665543 233344577776665554 333333 33333344444444443333
No 158
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=24.39 E-value=3.5e+02 Score=22.91 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=11.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 023199 240 APDEVKLFVILTISILPLAIGLTAYCFRL 268 (286)
Q Consensus 240 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (286)
.|+-..+..+..++++.+.+..++.++|.
T Consensus 28 ~P~~~~~~~~a~i~l~ilai~q~~~~~~~ 56 (182)
T PF09323_consen 28 HPRYIPLLYFAAILLLILAIVQLWRWFRP 56 (182)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34433333333333333444444444443
No 159
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=24.38 E-value=4.9e+02 Score=22.87 Aligned_cols=44 Identities=18% Similarity=0.069 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhc---hhh-HH----HHHHHHHHHHHHHHhHhhhhccCC
Q 023199 200 GFKLSLQMINILTTK---FPL-QF----ELQLCFLAMNFTYDTAVISIAPDE 243 (286)
Q Consensus 200 af~~S~~~i~~l~~~---~p~-~~----~l~~~~~~m~~ay~~~~~~i~p~~ 243 (286)
+|++|.+++..+-.. .|- .. -..++...|.+=-+.-+..+.|.-
T Consensus 31 GlvSSTA~t~~la~~~r~~p~~~~~~~~~i~lA~~~m~~R~l~iv~i~~~~l 82 (211)
T PF13194_consen 31 GLVSSTATTVSLARRSRENPELSRLLAAGILLASAVMFVRVLLIVAILNPAL 82 (211)
T ss_pred HHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 566777766655432 221 11 123344445554444455566643
No 160
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=24.26 E-value=3.8e+02 Score=28.32 Aligned_cols=95 Identities=11% Similarity=0.024 Sum_probs=39.6
Q ss_pred CCCcccccCccccchhHHHHHHHHHHHHHHHHHHHHhhchh-hH-HH--HHHHHHHHHHHHHhHhhhhccCCh-hH--HH
Q 023199 176 IAGESIWGSTNTIAFCLYMFFNSLGFKLSLQMINILTTKFP-LQ-FE--LQLCFLAMNFTYDTAVISIAPDEV-KL--FV 248 (286)
Q Consensus 176 ~~G~~vl~~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~p-~~-~~--l~~~~~~m~~ay~~~~~~i~p~~~-~~--~~ 248 (286)
..|+|++... -..+...-+. .+.+++++.+++.|+..+. ++ .. +.+++++...+|.+-.++..|-.. +. +.
T Consensus 180 ltG~~~~~~~-i~~~~~~d~~-~l~~l~~~l~vivL~~~fr~~~~~llpL~~~l~sv~~tlG~m~llG~plt~~s~~~~~ 257 (727)
T COG1033 180 LTGDPAIRYQ-ILREIQKDMV-VLLALAVILMVIVLYYVFRSVRRALLPLIIVLVSVLWTLGAMGLLGIPLTITTSAVPP 257 (727)
T ss_pred EeCcHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 4688877642 1222222222 3334455555555544332 22 22 223333444444433334455442 11 33
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 023199 249 ILTISILPLAIGLTAYCFRLQQKR 272 (286)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~r 272 (286)
+++++=.-+.+-+.-++....+++
T Consensus 258 llIgiGidy~vh~~nr~~ee~~~~ 281 (727)
T COG1033 258 LLIGIGIDYGVHFHNRYEEERRKG 281 (727)
T ss_pred HHhhhhhhHHHHHHHHHHHHHhcC
Confidence 333333444455555555444444
No 161
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=24.14 E-value=93 Score=25.55 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhhcccccc
Q 023199 257 LAIGLTAYCFRLQQKRQRTER 277 (286)
Q Consensus 257 ~~~~l~~~~~~~~~~r~~~~~ 277 (286)
+.+.++..+.|+.++|++++|
T Consensus 134 i~Y~l~~~~~~~~r~~r~~~r 154 (154)
T PF09835_consen 134 ISYFLVYFLVRKYRKRRRKRR 154 (154)
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 334556666766666655544
No 162
>PF12669 P12: Virus attachment protein p12 family
Probab=22.69 E-value=98 Score=21.55 Aligned_cols=11 Identities=9% Similarity=0.021 Sum_probs=6.8
Q ss_pred HHHHHHHhhhh
Q 023199 261 LTAYCFRLQQK 271 (286)
Q Consensus 261 l~~~~~~~~~~ 271 (286)
++++++|+.|+
T Consensus 16 ~~r~~~k~~K~ 26 (58)
T PF12669_consen 16 AIRKFIKDKKK 26 (58)
T ss_pred HHHHHHHHhhc
Confidence 45777766554
No 163
>TIGR02184 Myco_arth_vir_N Mycoplasma virulence family signal region. This model represents the N-terminal region, including a probable signal sequence or signal anchor which in most instances has four consecutive Lys residues before the hydrophobic stretch, of a family of large, virulence-associated proteins in Mycoplasma arthritidis and smaller proteins in Mycoplasma capricolum.
Probab=22.67 E-value=57 Score=20.22 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=17.4
Q ss_pred chhhhHHHHHHHHHhhhhhccc
Q 023199 136 ETRSSLLVVAALVATTTFQFCV 157 (286)
Q Consensus 136 ~~~~~l~vvAtLiATvtf~a~~ 157 (286)
+..-++.++|+|+++.+|...+
T Consensus 9 nkIl~~al~a~l~~S~s~g~Vi 30 (33)
T TIGR02184 9 NKIATLVIVTSLLTSLTISGVI 30 (33)
T ss_pred hheehHHHHHHHHHhheeeeEE
Confidence 4555888999999999987653
No 164
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=22.56 E-value=3.2e+02 Score=20.83 Aligned_cols=7 Identities=14% Similarity=0.097 Sum_probs=2.7
Q ss_pred HHhhhhc
Q 023199 266 FRLQQKR 272 (286)
Q Consensus 266 ~~~~~~r 272 (286)
+|+.|++
T Consensus 56 lrr~K~g 62 (95)
T TIGR02762 56 LRRIKGG 62 (95)
T ss_pred HHHHHcC
Confidence 4443333
No 165
>PF10943 DUF2632: Protein of unknown function (DUF2632); InterPro: IPR024251 This is a family of potential membrane proteins that may be components of the viral envelope.
Probab=22.12 E-value=3.9e+02 Score=22.56 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhH
Q 023199 219 FELQLCFLAMNFTYDTA 235 (286)
Q Consensus 219 ~~l~~~~~~m~~ay~~~ 235 (286)
+|+++++.++.++|-.-
T Consensus 70 fwlflsltslaiaywwl 86 (233)
T PF10943_consen 70 FWLFLSLTSLAIAYWWL 86 (233)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 57888999999998763
No 166
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.05 E-value=74 Score=29.59 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=7.3
Q ss_pred hhhhccCChhHHHH
Q 023199 236 VISIAPDEVKLFVI 249 (286)
Q Consensus 236 ~~~i~p~~~~~~~~ 249 (286)
+.+..|-+...+|+
T Consensus 255 ~aaF~Pcgiaalvl 268 (295)
T TIGR01478 255 TSTFLPYGIAALVL 268 (295)
T ss_pred HHhhcccHHHHHHH
Confidence 33456666554444
No 167
>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]
Probab=21.83 E-value=7.8e+02 Score=25.47 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=30.3
Q ss_pred HHHHHHHhHhhhhcc-CChhH-HHHHH-----HHHHHHHHHHHHHHHHhhhhc
Q 023199 227 AMNFTYDTAVISIAP-DEVKL-FVILT-----ISILPLAIGLTAYCFRLQQKR 272 (286)
Q Consensus 227 ~m~~ay~~~~~~i~p-~~~~~-~~~~~-----~~~~~~~~~l~~~~~~~~~~r 272 (286)
.|.++.++++....| ....+ ++..+ ++|++++++++.+-.|+..+|
T Consensus 525 lLGlTW~fgi~s~~~~~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k 577 (610)
T KOG4193|consen 525 LLGLTWIFGIFSWLPGTSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRK 577 (610)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHH
Confidence 577888888888888 55544 33322 366777778877777766333
No 168
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=21.78 E-value=3.1e+02 Score=19.92 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=14.7
Q ss_pred hhccCChhHHHHHHHHHHHHHHHHHHHHH
Q 023199 238 SIAPDEVKLFVILTISILPLAIGLTAYCF 266 (286)
Q Consensus 238 ~i~p~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (286)
.++|......-++.++++.+.-.|+--.|
T Consensus 27 ~~sp~qW~aIGvi~gi~~~~lt~ltN~YF 55 (68)
T PF04971_consen 27 QFSPSQWAAIGVIGGIFFGLLTYLTNLYF 55 (68)
T ss_pred ccCcccchhHHHHHHHHHHHHHHHhHhhh
Confidence 35666644444444455555555554344
No 169
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=21.77 E-value=6.2e+02 Score=23.11 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 023199 202 KLSLQMINILTTKFPLQFELQLCFLAMNFTY 232 (286)
Q Consensus 202 ~~S~~~i~~l~~~~p~~~~l~~~~~~m~~ay 232 (286)
.+|+.++.+-....++|..+...+....++|
T Consensus 66 l~s~lmv~iaf~~~~~~~~~k~~~~fy~~sf 96 (293)
T PF03419_consen 66 LISVLMVLIAFGPKRWRQFIKALLIFYLVSF 96 (293)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 4555555554444444444333333333333
No 170
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=21.43 E-value=51 Score=26.32 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=7.0
Q ss_pred HHHhhhhcccccc
Q 023199 265 CFRLQQKRQRTER 277 (286)
Q Consensus 265 ~~~~~~~r~~~~~ 277 (286)
.+|..+|||++++
T Consensus 19 ~iRPQkKr~Ke~~ 31 (113)
T PRK06531 19 MQRQQKKQAQERQ 31 (113)
T ss_pred eechHHHHHHHHH
Confidence 4566666655443
No 171
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=21.14 E-value=1.3e+02 Score=25.66 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=14.8
Q ss_pred HHHHHHHH-HHHHHHHHHhhhhccc
Q 023199 251 TISILPLA-IGLTAYCFRLQQKRQR 274 (286)
Q Consensus 251 ~~~~~~~~-~~l~~~~~~~~~~r~~ 274 (286)
..+++..+ -.|+|+|.|...+|.+
T Consensus 155 G~~VlA~~VA~L~~~F~RR~~rrsp 179 (215)
T PF05084_consen 155 GAVVLAVSVAMLTWFFLRRTGRRSP 179 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCC
Confidence 33344434 4788999988766633
No 172
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=21.08 E-value=1.3e+02 Score=25.55 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=5.3
Q ss_pred HHHHHHHHhhh
Q 023199 260 GLTAYCFRLQQ 270 (286)
Q Consensus 260 ~l~~~~~~~~~ 270 (286)
.++.+.+|..|
T Consensus 111 yfvir~~R~r~ 121 (163)
T PF06679_consen 111 YFVIRTFRLRR 121 (163)
T ss_pred HHHHHHHhhcc
Confidence 33445565544
No 173
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.97 E-value=4e+02 Score=21.16 Aligned_cols=10 Identities=0% Similarity=-0.001 Sum_probs=3.7
Q ss_pred HHHhhhhccc
Q 023199 265 CFRLQQKRQR 274 (286)
Q Consensus 265 ~~~~~~~r~~ 274 (286)
+++..|+.++
T Consensus 69 ~l~rlKRGrP 78 (111)
T TIGR03750 69 LLARLKRGKP 78 (111)
T ss_pred HHHHHHcCCC
Confidence 3333333333
No 174
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=20.79 E-value=3.9e+02 Score=20.43 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 023199 192 LYMFFNSLGFKLSLQM 207 (286)
Q Consensus 192 ~F~~~nt~af~~S~~~ 207 (286)
+++..|...|+.+.+.
T Consensus 39 LlFF~nIA~FcI~tvl 54 (90)
T PF11674_consen 39 LLFFANIAFFCIFTVL 54 (90)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666666655443
No 175
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.68 E-value=1.4e+02 Score=27.71 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhhhccccccc
Q 023199 249 ILTISILPLAIGLT--AYCFRLQQKRQRTERT 278 (286)
Q Consensus 249 ~~~~~~~~~~~~l~--~~~~~~~~~r~~~~~~ 278 (286)
|...+++.+.|.|+ -.|+++ +|.++=++
T Consensus 263 iaalvllil~vvliiLYiWlyr--rRK~swkh 292 (295)
T TIGR01478 263 IAALVLIILTVVLIILYIWLYR--RRKKSWKH 292 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhcccccc
Confidence 33333344444333 444444 44444333
Done!