BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023201
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XJZ|A Chain A, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
pdb|1XJZ|B Chain B, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
Length = 233
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 12/172 (6%)
Query: 112 KWEPTVDGYLRFLVDSKLVYDTLEGIIEK-APFPSYAE-FRNTGLERSEKLAKDLEWFKE 169
K + T DG+ + +Y LE IE+ P +A + L R L +DL ++
Sbjct: 39 KGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYG 98
Query: 170 QGYTIPEPSSPGIS-YVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKIL-- 226
+ P +P + YV+ L E+ +P+ + H Y Y A +GG+++ KK+A+K L
Sbjct: 99 PRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLADLSGGQVL-KKIAQKALDL 157
Query: 227 --GGKELEFYKWD--GELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
G+ L F+ + K Q R ++N + T + R +EE + +F
Sbjct: 158 PSSGEGLAFFTFPNIASATKFKQLYRSRMNSL--EMTPAVRQRVIEEAKTAF 207
>pdb|1WNW|A Chain A, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
pdb|1WNW|B Chain B, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
pdb|1WNW|C Chain C, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
Length = 215
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 9/153 (5%)
Query: 129 LVYDTLEGIIEKAPFPSYAE-FRNTGLERSEKLAKDLEWFKEQG-YTIPEPSSPG-ISYV 185
L Y LE ++ +AE + L R+E LA+DL+ + +SP I YV
Sbjct: 51 LFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSSEWRSRITASPAVIDYV 110
Query: 186 QYLEELSEK-DPQAFICHFYNIYFAHSAGGRMIGKKVAEKI-LGGKELEFYKWDG--ELP 241
LEE+ + D A + H Y Y + +GG++I + + + + L FY ++G +L
Sbjct: 111 NRLEEIRDNVDGPALVAHHYVRYLGNLSGGQVIARMMQRHYGVDPEALGFYHFEGIAKLK 170
Query: 242 KLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
R+KLN + + E++ L+E +F
Sbjct: 171 VYKDEYREKLNNL--ELSDEQREHLLKEATDAF 201
>pdb|1N3U|A Chain A, Crystal Structure Of Human Heme Oxygenase 1 (Ho-1) In
Complex With Its Substrate Heme, Crystal Form B
pdb|1N3U|B Chain B, Crystal Structure Of Human Heme Oxygenase 1 (Ho-1) In
Complex With Its Substrate Heme, Crystal Form B
pdb|1N45|A Chain A, X-Ray Crystal Structure Of Human Heme Oxygenase-1 (Ho-1)
In Complex With Its Substrate Heme
pdb|1N45|B Chain B, X-Ray Crystal Structure Of Human Heme Oxygenase-1 (Ho-1)
In Complex With Its Substrate Heme
pdb|1OZR|A Chain A, Crystal Structures Of The Ferric, Ferrous And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZR|B Chain B, Crystal Structures Of The Ferric, Ferrous And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZW|A Chain A, Crystal Structures Of The Ferric, Ferrous And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZW|B Chain B, Crystal Structures Of The Ferric, Ferrous And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1S8C|A Chain A, Crystal Structure Of Human Heme Oxygenase In A Complex
With Biliverdine
pdb|1S8C|B Chain B, Crystal Structure Of Human Heme Oxygenase In A Complex
With Biliverdine
pdb|1S8C|C Chain C, Crystal Structure Of Human Heme Oxygenase In A Complex
With Biliverdine
pdb|1S8C|D Chain D, Crystal Structure Of Human Heme Oxygenase In A Complex
With Biliverdine
pdb|1S13|A Chain A, Human Heme Oxygenase Oxidatition Of Alpha- And Gamma-Meso-
Phenylhemes
pdb|1S13|B Chain B, Human Heme Oxygenase Oxidatition Of Alpha- And Gamma-Meso-
Phenylhemes
pdb|1T5P|A Chain A, Human Heme Oxygenase Oxidation Of Alpha- And Gamma-Meso-
Phenylhemes
pdb|1T5P|B Chain B, Human Heme Oxygenase Oxidation Of Alpha- And Gamma-Meso-
Phenylhemes
pdb|1TWN|A Chain A, Crystal Structures Of Ferrous And Ferrous-No Forms Of
Verdoheme In A Complex With Human Heme Oxygenase-1:
Catalytic Implications For Heme Cleavage
pdb|1TWN|B Chain B, Crystal Structures Of Ferrous And Ferrous-No Forms Of
Verdoheme In A Complex With Human Heme Oxygenase-1:
Catalytic Implications For Heme Cleavage
pdb|1TWR|A Chain A, Crystal Structures Of Ferrous And Ferrous-No Forms Of
Verdoheme In A Complex With Human Heme Oxygenase-1:
Catalytic Implications For Heme Cleavage
pdb|1TWR|B Chain B, Crystal Structures Of Ferrous And Ferrous-No Forms Of
Verdoheme In A Complex With Human Heme Oxygenase-1:
Catalytic Implications For Heme Cleavage
pdb|3CZY|A Chain A, Crystal Structure Of Human Heme Oxygenase-1 In Complex
With 1-(Adamantan-1-Yl)-2-(1h-Imidazol-1-Yl)ethanone
pdb|3CZY|B Chain B, Crystal Structure Of Human Heme Oxygenase-1 In Complex
With 1-(Adamantan-1-Yl)-2-(1h-Imidazol-1-Yl)ethanone
pdb|3HOK|A Chain A, X-Ray Crystal Structure Of Human Heme Oxygenase-1 With
(2r,
4s)-2-[2-(4-Chlorophenyl)ethyl]-2-[(1h-Imidazol-1-Yl)
Methyl]-4[((5-Trifluoromethylpyridin-2-Yl)thio)methyl]-
1,3- Dioxolane: A Novel, Inducible Binding Mode
pdb|3HOK|B Chain B, X-Ray Crystal Structure Of Human Heme Oxygenase-1 With
(2r,
4s)-2-[2-(4-Chlorophenyl)ethyl]-2-[(1h-Imidazol-1-Yl)
Methyl]-4[((5-Trifluoromethylpyridin-2-Yl)thio)methyl]-
1,3- Dioxolane: A Novel, Inducible Binding Mode
pdb|3K4F|A Chain A, X-Ray Crystal Structure Of Human Heme Oxygenase-1 In
Complex With
4-Phenyl-1-(1h-1,2,4-Triazol-1-Yl)-2-Butanone
pdb|3K4F|B Chain B, X-Ray Crystal Structure Of Human Heme Oxygenase-1 In
Complex With
4-Phenyl-1-(1h-1,2,4-Triazol-1-Yl)-2-Butanone
pdb|3TGM|A Chain A, X-Ray Crystal Structure Of Human Heme Oxygenase-1 In
Complex With 1- (1h-Imidazol-1-Yl)-4,4-Diphenyl-2
Butanone
pdb|3TGM|B Chain B, X-Ray Crystal Structure Of Human Heme Oxygenase-1 In
Complex With 1- (1h-Imidazol-1-Yl)-4,4-Diphenyl-2
Butanone
Length = 233
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 112 KWEPTVDGYLRFLVDSKLVYDTLEGIIEK-APFPSYAE-FRNTGLERSEKLAKDLEWFKE 169
K + T DG+ + +Y LE IE+ P +A + L R L +DL ++
Sbjct: 39 KGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYG 98
Query: 170 QGYTIPEPSSPGIS-YVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKIL-- 226
+ P +P + YV+ L E+ +P+ + H Y Y +GG+++ KK+A+K L
Sbjct: 99 PRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVL-KKIAQKALDL 157
Query: 227 --GGKELEFYKWD--GELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
G+ L F+ + K Q R ++N + T + R +EE + +F
Sbjct: 158 PSSGEGLAFFTFPNIASATKFKQLYRSRMNSL--EMTPAVRQRVIEEAKTAF 207
>pdb|1WOV|A Chain A, Crystal Strucure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme
pdb|1WOV|B Chain B, Crystal Strucure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme
pdb|1WOW|A Chain A, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 Complexed With Heme In Ferrous Form
pdb|1WOW|B Chain B, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 Complexed With Heme In Ferrous Form
pdb|1WOX|A Chain A, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme And No
pdb|1WOX|B Chain B, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme And No
Length = 250
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 154 LERSEKLAKDLEWFKEQGYT-IPEPSSPGISYVQYLEELSEKDPQAFICHFYNIYFAHSA 212
L R++KLA+DL ++ + I +P+ YV L+ ++ +P+ I H Y Y +
Sbjct: 73 LNRTDKLAEDLTYYYGPNWQQIIQPTPCAKIYVDRLKTIAASEPELLIAHCYTRYLGDLS 132
Query: 213 GGRMIGKKV--AEKILGGKELEFYKWD-----GELPKLLQNVRDKLNKVAESWTREEKNR 265
GG+ + + A ++ G+ Y++D G+ + + RD LN + NR
Sbjct: 133 GGQSLKNIIRSALQLPEGEGTAMYEFDSLPTPGDRRQFKEIYRDVLNSL--PLDEATINR 190
Query: 266 CLEETELSFKHSGEIL 281
+EE +F + E++
Sbjct: 191 IVEEANYAFSLNREVM 206
>pdb|1NI6|A Chain A, Comparisions Of The Heme-free And-bound Crystal Structures
Of Human Heme Oxygenase-1
pdb|1NI6|B Chain B, Comparisions Of The Heme-free And-bound Crystal Structures
Of Human Heme Oxygenase-1
pdb|1NI6|C Chain C, Comparisions Of The Heme-free And-bound Crystal Structures
Of Human Heme Oxygenase-1
pdb|1NI6|D Chain D, Comparisions Of The Heme-free And-bound Crystal Structures
Of Human Heme Oxygenase-1
Length = 224
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 112 KWEPTVDGYLRFLVDSKLVYDTLEGIIEK-APFPSYAE-FRNTGLERSEKLAKDLEWFKE 169
K + T DG+ + +Y LE IE+ P +A + L R L +DL ++
Sbjct: 39 KGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYG 98
Query: 170 QGYTIPEPSSPGIS-YVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKIL-- 226
+ P +P + YV+ L E+ +P+ + H Y Y +GG+++ KK+A+K L
Sbjct: 99 PRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVL-KKIAQKALDL 157
Query: 227 --GGKELEFYKWD--GELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
G+ L F+ + K Q R ++N + T + R +EE + +F
Sbjct: 158 PSSGEGLAFFTFPNIASATKFKQLYRSRMNSL--EMTPAVRQRVIEEAKTAF 207
>pdb|1OYK|A Chain A, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OYK|B Chain B, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OYL|A Chain A, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OYL|B Chain B, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZE|A Chain A, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-
1:catalytic Implications
pdb|1OZE|B Chain B, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-
1:catalytic Implications
pdb|1OZL|A Chain A, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZL|B Chain B, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
Length = 233
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 112 KWEPTVDGYLRFLVDSKLVYDTLEGIIEK-APFPSYAE-FRNTGLERSEKLAKDLEWFKE 169
K + T DG+ + +Y LE IE+ P +A + L R L +DL ++
Sbjct: 39 KGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYG 98
Query: 170 QGYTIPEPSSPGIS-YVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKIL-- 226
+ P +P + YV+ L E+ +P+ + H Y Y +GG+++ KK+A+K L
Sbjct: 99 PRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGALSGGQVL-KKIAQKALDL 157
Query: 227 --GGKELEFYKWD--GELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
G+ L F+ + K Q R ++N + T + R +EE + +F
Sbjct: 158 PSSGEGLAFFTFPNIASATKFKQLYRSRMNSL--EMTPAVRQRVIEEAKTAF 207
>pdb|1WNX|A Chain A, D136e Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
pdb|1WNX|B Chain B, D136e Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
Length = 215
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 129 LVYDTLEGIIEKAPFPSYAE-FRNTGLERSEKLAKDLEWFKEQG-YTIPEPSSPG-ISYV 185
L Y LE ++ +AE + L R+E LA+DL+ + +SP I YV
Sbjct: 51 LFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSSEWRSRITASPAVIDYV 110
Query: 186 QYLEELSEK-DPQAFICHFYNIYFAHSAGGRMIGKKVAEKI-LGGKELEFYKWDG--ELP 241
LEE+ + D A + H Y Y +GG++I + + + + L FY ++G +L
Sbjct: 111 NRLEEIRDNVDGPALVAHHYVRYLGELSGGQVIARMMQRHYGVDPEALGFYHFEGIAKLK 170
Query: 242 KLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
R+KLN + + E++ L+E +F
Sbjct: 171 VYKDEYREKLNNL--ELSDEQREHLLKEATDAF 201
>pdb|1IW0|A Chain A, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferric State
pdb|1IW0|B Chain B, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferric State
pdb|1IW0|C Chain C, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferric State
pdb|1IW1|A Chain A, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferrous State
pdb|1IW1|B Chain B, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferrous State
pdb|1IW1|C Chain C, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferrous State
pdb|1V8X|A Chain A, Crystal Structure Of The Dioxygen-Bound Heme Oxygenase
From Corynebacterium Diphtheriae
pdb|1V8X|B Chain B, Crystal Structure Of The Dioxygen-Bound Heme Oxygenase
From Corynebacterium Diphtheriae
pdb|1V8X|C Chain C, Crystal Structure Of The Dioxygen-Bound Heme Oxygenase
From Corynebacterium Diphtheriae
pdb|1WZD|A Chain A, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Ch2ch2cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZD|B Chain B, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Ch2ch2cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZF|A Chain A, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZF|B Chain B, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZG|A Chain A, Crystal Structure Of An Artificial Metalloprotein:
Fe(Salophen)WILD Type Heme Oxygenase
pdb|1WZG|B Chain B, Crystal Structure Of An Artificial Metalloprotein:
Fe(Salophen)WILD Type Heme Oxygenase
pdb|2Z68|A Chain A, Crystal Structure Of An Artificial Metalloprotein: Cr[n-
Salicylidene-4-Amino-3-Hydroxyhydrocinnamic Acid]WILD
Type Heme Oxygenase
pdb|2Z68|B Chain B, Crystal Structure Of An Artificial Metalloprotein: Cr[n-
Salicylidene-4-Amino-3-Hydroxyhydrocinnamic Acid]WILD
Type Heme Oxygenase
pdb|3I8R|A Chain A, Crystal Structure Of The Heme Oxygenase From
Corynebacterium Diphtheriae (Hmuo) In Complex With Heme
Binding Ditiothreit
pdb|3I8R|B Chain B, Crystal Structure Of The Heme Oxygenase From
Corynebacterium Diphtheriae (Hmuo) In Complex With Heme
Binding Ditiothreit
pdb|3I8R|C Chain C, Crystal Structure Of The Heme Oxygenase From
Corynebacterium Diphtheriae (Hmuo) In Complex With Heme
Binding Ditiothreit
pdb|3MOO|A Chain A, Crystal Structure Of The Hmuo, Heme Oxygenase From
Corynebacterium Diphtheriae, In Complex With Azide-Bound
Verdoheme
pdb|3MOO|B Chain B, Crystal Structure Of The Hmuo, Heme Oxygenase From
Corynebacterium Diphtheriae, In Complex With Azide-Bound
Verdoheme
Length = 215
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 129 LVYDTLEGIIEKAPFPSYAE-FRNTGLERSEKLAKDLEWFKEQG-YTIPEPSSPG-ISYV 185
L Y LE ++ +AE + L R+E LA+DL+ + +SP I YV
Sbjct: 51 LFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSSEWRSRITASPAVIDYV 110
Query: 186 QYLEELSEK-DPQAFICHFYNIYFAHSAGGRMIGKKVAEKI-LGGKELEFYKWDG--ELP 241
LEE+ + D A + H Y Y +GG++I + + + + L FY ++G +L
Sbjct: 111 NRLEEIRDNVDGPALVAHHYVRYLGDLSGGQVIARMMQRHYGVDPEALGFYHFEGIAKLK 170
Query: 242 KLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
R+KLN + + E++ L+E +F
Sbjct: 171 VYKDEYREKLNNL--ELSDEQREHLLKEATDAF 201
>pdb|1WNV|A Chain A, D136a Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
pdb|1WNV|B Chain B, D136a Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
pdb|1WNV|C Chain C, D136a Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
Length = 215
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 129 LVYDTLEGIIEKAPFPSYAE-FRNTGLERSEKLAKDLEWFKEQG-YTIPEPSSPG-ISYV 185
L Y LE ++ +AE + L R+E LA+DL+ + +SP I YV
Sbjct: 51 LFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSSEWRSRITASPAVIDYV 110
Query: 186 QYLEELSEK-DPQAFICHFYNIYFAHSAGGRMIGKKVAEKI-LGGKELEFYKWDG--ELP 241
LEE+ + D A + H Y Y +GG++I + + + + L FY ++G +L
Sbjct: 111 NRLEEIRDNVDGPALVAHHYVRYLGALSGGQVIARMMQRHYGVDPEALGFYHFEGIAKLK 170
Query: 242 KLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
R+KLN + + E++ L+E +F
Sbjct: 171 VYKDEYREKLNNL--ELSDEQREHLLKEATDAF 201
>pdb|1XK0|A Chain A, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
pdb|1XK0|B Chain B, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
Length = 233
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 112 KWEPTVDGYLRFLVDSKLVYDTLEGIIEK-APFPSYAE-FRNTGLERSEKLAKDLEWFKE 169
K + T DG+ + +Y LE IE+ P +A + L R L +DL ++
Sbjct: 39 KGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYG 98
Query: 170 QGYTIPEPSSPGIS-YVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKIL-- 226
+ P +P + YV+ L E+ +P+ + H Y Y A +GG+++ KK+A+K L
Sbjct: 99 PRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLADLSGGQVL-KKIAQKALDL 157
Query: 227 --GGKELEFYKWD--GELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
G+ L F+ + K Q ++N + T + R +EE + +F
Sbjct: 158 PSSGEGLAFFTFPNIASATKFKQLYESRMNSL--EMTPAVRQRVIEEAKTAF 207
>pdb|2Q32|A Chain A, Crystal Structure Of Human Heme Oxygenase-2 C127a (Ho-2)
pdb|2Q32|B Chain B, Crystal Structure Of Human Heme Oxygenase-2 C127a (Ho-2)
pdb|2QPP|A Chain A, Crystal Structure Of Human Heme Oxygenase-2 C127a (Ho-2)
With Bound Heme
pdb|2QPP|B Chain B, Crystal Structure Of Human Heme Oxygenase-2 C127a (Ho-2)
With Bound Heme
pdb|2RGZ|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Human Heme Oxygenase-2 C127a (Ho-2) With Bound Heme
pdb|2RGZ|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Human Heme Oxygenase-2 C127a (Ho-2) With Bound Heme
Length = 264
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 154 LERSEKLAKDLEWFKEQGY--TIPEPSSPGISYVQYLEELSEKDPQAFICHFYNIYFAHS 211
L R E L KD+E+F + + + P + YV+ + + + +P+ + H Y Y
Sbjct: 103 LHRKEALTKDMEYFFGENWEEQVQAPKA-AQKYVERIHYIGQNEPELLVAHAYTRYMGDL 161
Query: 212 AGGRMIGKKVAEKIL----GGKELEFYKWDG--ELPKLLQNVRDKLNKVAESWTREEKNR 265
+GG+++ KKVA++ L G+ +FY ++ + Q R ++N + + K R
Sbjct: 162 SGGQVL-KKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQLYRARMNAL--DLNMKTKER 218
Query: 266 CLEETELSFKHSGEIL 281
+EE +F+++ +I
Sbjct: 219 IVEEANKAFEYNMQIF 234
>pdb|1XK2|A Chain A, Nadph- And Ascorbate-Supported Heme Oxygenase Reactions
Are Distinct. Regiospecificity Of Heme Cleavage By The
R183e Mutant
pdb|1XK2|B Chain B, Nadph- And Ascorbate-Supported Heme Oxygenase Reactions
Are Distinct. Regiospecificity Of Heme Cleavage By The
R183e Mutant
pdb|1XK3|A Chain A, Nadph- And Ascorbate-Supported Heme Oxygenase Reactions
Are Distinct. Regiospecificity Of Heme Cleavage By The
R183e Mutant
pdb|1XK3|B Chain B, Nadph- And Ascorbate-Supported Heme Oxygenase Reactions
Are Distinct. Regiospecificity Of Heme Cleavage By The
R183e Mutant
Length = 233
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 12/172 (6%)
Query: 112 KWEPTVDGYLRFLVDSKLVYDTLEGIIEK-APFPSYAE-FRNTGLERSEKLAKDLEWFKE 169
K + T DG+ + +Y LE IE+ P +A + L R L +DL ++
Sbjct: 39 KGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYG 98
Query: 170 QGYTIPEPSSPGIS-YVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKIL-- 226
+ P +P + YV+ L E+ +P+ + H Y Y +GG+++ KK+A+K L
Sbjct: 99 PRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVL-KKIAQKALDL 157
Query: 227 --GGKELEFYKWD--GELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
G+ L F+ + K Q ++N + T + R +EE + +F
Sbjct: 158 PSSGEGLAFFTFPNIASATKFKQLYESRMNSL--EMTPAVRQRVIEEAKTAF 207
>pdb|3I9T|A Chain A, Crystal Structure Of The Rat Heme Oxygenase (Ho-1) In
Comple Heme Binding Dithiothreitol (Dtt)
pdb|3I9U|A Chain A, Crystal Structure Of The Rat Heme Oxygenase (Ho-1) In
Comple Heme Binding Dithioerythritol (Dte)
Length = 263
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 12/172 (6%)
Query: 112 KWEPTVDGYLRFLVDSKLVYDTLEGIIEK-APFPSYAE-FRNTGLERSEKLAKDLEWFKE 169
K + + +G+ + +Y LE IE+ P YA + L R L +D+ ++
Sbjct: 39 KGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYG 98
Query: 170 QGYTIPEPSSPGIS-YVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKILG- 227
+ P +P YV+ L E+ P+ + H Y Y +GG+++ KK+A+K +
Sbjct: 99 PHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVL-KKIAQKAMAL 157
Query: 228 ---GKELEFYKWDG--ELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
G+ L F+ + K Q R ++N + T E K+R EE + +F
Sbjct: 158 PSSGEGLAFFTFPSIDNPTKFKQLYRARMNTL--EMTPEVKHRVTEEAKTAF 207
>pdb|1DVE|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme
pdb|1IRM|A Chain A, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IRM|B Chain B, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IRM|C Chain C, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IVJ|A Chain A, Crystal Structure Of Rat Hemeoxygenase-1 In Complex With
Heme And Azide.
pdb|1IX3|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme Bound To Cyanide
pdb|1IX4|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme Bound To Carbon Monoxide
pdb|1J02|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1-heme Bound To No
pdb|1J2C|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Biliverdin Ixalpha-Iron Cluster
pdb|1UBB|A Chain A, Crystal Structure Of Rat Ho-1 In Complex With Ferrous Heme
pdb|1ULX|A Chain A, Partially Photolyzed Structure Of Co-bound Heme-heme
Oxygenase Complex
pdb|1VGI|A Chain A, Crystal Structure Of Xenon Bound Rat Heme-heme Oxygenase-1
Complex
pdb|2DY5|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme And
2-[2-(4-Chlorophenyl)ethyl]-2-[(1h-Imidazol-1-Yl)
Methyl]-1,3-Dioxolane
pdb|2E7E|A Chain A, Bent-Binding Of Cyanide To The Heme Iron In Rat Heme
Oxygenase-1
pdb|2ZVU|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Ferrous Verdoheme
pdb|4G7L|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme And O2
pdb|4G7P|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And Co With 1 Hr
Illumination At 100 K: Laser Off
pdb|4G7T|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And Co With 1 Hr
Illumination: Laser On
pdb|4G7U|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And Co With 16
Hr Illumination: Laser Off
pdb|4G8P|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And Co With 16
Hr Illumination: Laser On
pdb|4G8U|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And O2 With 13
Hr Illumination: Laser Off
pdb|4G8W|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And O2 With 13
Hr Illumination: Laser On
pdb|4G98|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And Co At 100k
pdb|4G99|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And Co At 100 K
After Warming To 160 K
Length = 267
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 118 DGYLRFLVDSKLVYDTLEGIIEK-APFPSYAE-FRNTGLERSEKLAKDLEWFKEQGYTIP 175
+G+ + +Y LE IE+ P YA + L R L +D+ ++ +
Sbjct: 45 EGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEA 104
Query: 176 EPSSPGIS-YVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKILG----GKE 230
P +P YV+ L E+ P+ + H Y Y +GG+++ KK+A+K + G+
Sbjct: 105 IPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVL-KKIAQKAMALPSSGEG 163
Query: 231 LEFYKWDG--ELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
L F+ + K Q R ++N + T E K+R EE + +F
Sbjct: 164 LAFFTFPSIDNPTKFKQLYRARMNTL--EMTPEVKHRVTEEAKTAF 207
>pdb|1XK1|A Chain A, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
pdb|1XK1|B Chain B, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
Length = 233
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 12/172 (6%)
Query: 112 KWEPTVDGYLRFLVDSKLVYDTLEGIIEK-APFPSYAE-FRNTGLERSEKLAKDLEWFKE 169
K + T DG+ + +Y LE IE+ P +A + L R L +DL ++
Sbjct: 39 KGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYG 98
Query: 170 QGYTIPEPSSPGIS-YVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKIL-- 226
+ P +P + YV+ L E+ +P+ + H Y Y + G+++ KK+A+K L
Sbjct: 99 PRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSHGQVL-KKIAQKALDL 157
Query: 227 --GGKELEFYKWD--GELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
G+ L F+ + K Q ++N + T + R +EE + +F
Sbjct: 158 PSSGEGLAFFTFPNIASATKFKQLYESRMNSL--EMTPAVRQRVIEEAKTAF 207
>pdb|1DVG|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme; Seleleno-Methionine Derivative, Mutated At
M51t,M93l, M155l,M191l.
pdb|1DVG|B Chain B, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme; Seleleno-Methionine Derivative, Mutated At
M51t,M93l, M155l,M191l
Length = 267
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 124 LVDSKL--VYDTLEGIIEK-APFPSYAE-FRNTGLERSEKLAKDLEWFKEQGYTIPEPSS 179
LV + L +Y LE IE+ P YA + L R L +DL ++ + P +
Sbjct: 49 LVTASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDLAFWYGPHWQEAIPYT 108
Query: 180 PGIS-YVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKIL-------GGKEL 231
P YV+ L E+ P+ + H Y Y +GG+++ KK+A+K L G
Sbjct: 109 PATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVL-KKIAQKALALPSSGEGLASF 167
Query: 232 EFYKWDGELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSF 274
F D K Q R + N + T E K+R EE + +F
Sbjct: 168 TFPSIDNPT-KFKQLYRARXNTL--ELTPEVKHRVTEEAKTAF 207
>pdb|1WE1|A Chain A, Crystal Structure Of Heme Oxygenase-1 From Cyanobacterium
Synechocystis Sp. Pcc6803 In Complex With Heme
pdb|1WE1|B Chain B, Crystal Structure Of Heme Oxygenase-1 From Cyanobacterium
Synechocystis Sp. Pcc6803 In Complex With Heme
pdb|1WE1|C Chain C, Crystal Structure Of Heme Oxygenase-1 From Cyanobacterium
Synechocystis Sp. Pcc6803 In Complex With Heme
pdb|1WE1|D Chain D, Crystal Structure Of Heme Oxygenase-1 From Cyanobacterium
Synechocystis Sp. Pcc6803 In Complex With Heme
Length = 240
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 154 LERSEKLAKDLEWFKEQGYTIP-EPSSPGISYVQYLEELSEKDPQAFICHFYNIYFAHSA 212
L R + L +DL+++ + + S+ G +YV + +++ P+ + H Y Y +
Sbjct: 74 LNRKQSLEQDLQFYYGSNWRQEVKISAAGQAYVDRVRQVAATAPELLVAHSYTRYLGDLS 133
Query: 213 GGRMIGKKVAEKIL----GGKEL-EFYKWDGE 239
GG+++ KK+A+ + GG EF D E
Sbjct: 134 GGQIL-KKIAQNAMNLHDGGTAFYEFADIDDE 164
>pdb|2F03|A Chain A, Crystal Structure Of Tetrameric Restriction Endonuclease
Sfii In Complex With Cognate Dna (Partial Bound Form)
pdb|2F03|C Chain C, Crystal Structure Of Tetrameric Restriction Endonuclease
Sfii In Complex With Cognate Dna (Partial Bound Form)
Length = 269
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 111 TKWEPTVDGYL--RFLVDSKLVYDTLEGIIEKAPFPSYAEFRNTG 153
+W P+ G L LVD+K + ++++ P AEFRNT
Sbjct: 83 VRWLPSPHGLLPQVLLVDAKASTEKNRDTLQRSQLPXDAEFRNTS 127
>pdb|2EZV|A Chain A, Crystal Structure Of Tetrameric Restriction Endonuclease
Sfii Bound To Cognate Dna.
pdb|2EZV|B Chain B, Crystal Structure Of Tetrameric Restriction Endonuclease
Sfii Bound To Cognate Dna
Length = 269
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 111 TKWEPTVDGYL--RFLVDSKLVYDTLEGIIEKAPFPSYAEFRNTG 153
+W P+ G L LVD+K + ++++ P AEFRNT
Sbjct: 83 VRWLPSPHGLLPQVLLVDAKASTEKNRDTLQRSQLPMDAEFRNTS 127
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 127 SKLVYDTLEGIIEKAPFPSYAEFRNTGLERSE 158
SK +Y+ +E + K P +YA +R+ L R+E
Sbjct: 417 SKDIYNYMEPYVSKNPRQAYANYRDIDLGRNE 448
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 147 AEFRNTGLERSEKLAKDLEWFKEQGYTIPEPSSPG 181
A+F G++R E L K L + K G T P PG
Sbjct: 67 ADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPG 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,304,640
Number of Sequences: 62578
Number of extensions: 340218
Number of successful extensions: 878
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 47
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)