Query 023201
Match_columns 286
No_of_seqs 162 out of 458
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 09:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00168 pbsA heme oxygenase; 100.0 3.5E-55 7.6E-60 399.1 20.5 201 75-285 2-208 (238)
2 COG5398 Heme oxygenase [Inorga 100.0 7.1E-48 1.5E-52 340.7 15.8 197 77-284 2-204 (238)
3 PF01126 Heme_oxygenase: Heme 100.0 1.6E-42 3.4E-47 306.1 15.3 197 77-283 2-205 (205)
4 cd00232 HemeO Heme oxygenase c 100.0 2.4E-39 5.1E-44 285.4 20.5 197 77-284 1-202 (203)
5 KOG4480 Heme oxygenase [Inorga 99.9 6.5E-26 1.4E-30 208.7 8.8 278 1-286 1-281 (283)
6 KOG4480 Heme oxygenase [Inorga 99.8 1.1E-19 2.3E-24 167.8 11.1 196 72-285 7-213 (283)
7 COG3230 HemO Heme oxygenase [I 99.7 3E-15 6.6E-20 130.4 15.5 179 75-283 8-193 (196)
8 PRK14713 multifunctional hydro 97.9 0.0002 4.2E-09 72.6 14.5 188 64-268 306-509 (530)
9 PTZ00347 phosphomethylpyrimidi 96.9 0.024 5.2E-07 57.1 14.4 185 68-278 3-206 (504)
10 PRK09517 multifunctional thiam 96.8 0.021 4.6E-07 60.5 14.0 177 73-268 541-733 (755)
11 PF03070 TENA_THI-4: TENA/THI- 96.3 0.0045 9.8E-08 54.2 4.2 169 104-276 14-199 (210)
12 COG0819 TenA Putative transcri 95.7 0.39 8.4E-06 43.9 13.8 169 77-267 2-197 (218)
13 PRK05157 pyrroloquinoline quin 95.6 0.26 5.7E-06 45.8 12.4 187 72-283 8-226 (246)
14 TIGR02111 PQQ_syn_pqqC coenzym 93.7 1.5 3.3E-05 40.6 12.5 187 76-282 4-218 (239)
15 PF12981 DUF3865: Domain of Un 60.1 72 0.0016 29.5 8.9 121 160-284 96-226 (231)
16 COG5398 Heme oxygenase [Inorga 39.4 60 0.0013 30.0 5.0 106 118-225 5-127 (238)
17 PF14246 TetR_C_7: AefR-like t 29.5 67 0.0014 21.9 3.0 25 251-275 28-52 (55)
18 TIGR02792 PCA_ligA protocatech 29.2 59 0.0013 27.1 3.0 28 239-268 33-60 (117)
19 cd07924 PCA_45_Doxase_A The A 27.4 69 0.0015 26.9 3.1 28 239-268 36-63 (121)
20 PF02093 Gag_p30: Gag P30 core 26.8 87 0.0019 28.7 3.9 27 244-273 42-68 (211)
21 PRK13377 protocatechuate 4,5-d 25.8 74 0.0016 27.0 3.0 28 239-268 39-66 (129)
22 PRK13379 protocatechuate 4,5-d 25.7 77 0.0017 26.5 3.1 28 239-268 40-67 (119)
23 PRK13378 protocatechuate 4,5-d 25.6 77 0.0017 26.4 3.1 28 239-268 39-66 (117)
24 cd07921 PCA_45_Doxase_A_like S 25.3 78 0.0017 25.9 3.0 28 239-268 28-55 (106)
25 cd07356 HN_L-whirlin_R1_like F 24.9 1.3E+02 0.0029 23.3 4.0 37 244-284 5-41 (78)
26 cd07925 LigA_like_1 The A subu 23.7 90 0.0019 25.6 3.1 28 239-268 28-55 (106)
27 cd07321 Extradiol_Dioxygenase_ 21.6 97 0.0021 23.6 2.8 26 241-268 20-45 (77)
28 cd07923 Gallate_dioxygenase_C 21.4 95 0.0021 24.9 2.7 27 240-268 21-47 (94)
29 PF05570 DUF765: Circovirus pr 20.8 53 0.0012 20.3 0.9 19 1-19 1-21 (29)
30 KOG0028 Ca2+-binding protein ( 20.6 1.2E+02 0.0027 26.8 3.5 28 245-272 126-153 (172)
No 1
>CHL00168 pbsA heme oxygenase; Provisional
Probab=100.00 E-value=3.5e-55 Score=399.10 Aligned_cols=201 Identities=22% Similarity=0.387 Sum_probs=192.7
Q ss_pred chhHHHHHHHHHHHHhHHhhhhhcccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccccccccc
Q 023201 75 AKGFVEEMRFVAMKLHTKEQAREGEKEVKEPEERPVTKWEPTVDGYLRFLVDSKLVYDTLEGIIEK-APFPSYAEFRNTG 153 (286)
Q Consensus 75 ~~~Ls~~LR~~Tr~~H~~a~a~~~ek~~~s~~~~~L~~g~~~~~~Y~~lL~~ly~VY~aLE~al~~-~~~p~l~~f~~p~ 153 (286)
+.+|+++||++|++.|+++ |+ +.|+++|++|..++++|+++|.++|+||.+||+++++ .++|++++|++|+
T Consensus 2 ~~~ls~~Lr~~T~~~H~~a-----E~---~~f~k~ll~g~~~~~~Y~~ll~~ly~vY~aLE~~l~~~~~~~~~~~~~~pe 73 (238)
T CHL00168 2 VTNLATQLREGTTKSHSMA-----EN---VSFVKSFLGGVIDKKSYRKLVANLYFVYSAIEEEIEKNKEHPLIKPIYFQE 73 (238)
T ss_pred chHHHHHHHHHHHHHHHHH-----Hc---cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccchh
Confidence 3489999999999999999 99 9999999999999999999999999999999999999 6899999999999
Q ss_pred cccHHHHHHHHHHhhhcCC-CCCCCCCchhHHHHHHHHhhccCccchHhHHHHHHhhhchhhHHHHHHHHHHh-cC-CCC
Q 023201 154 LERSEKLAKDLEWFKEQGY-TIPEPSSPGISYVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKI-LG-GKE 230 (286)
Q Consensus 154 L~Rt~aL~~DL~~l~g~~w-~~~~p~pa~~~Yv~~I~~la~~~P~~LlAh~YvrYlGdlsGGQiI~~~la~~~-L~-~~g 230 (286)
|+|+++|++||++|+|++| +.++|+|+++.||+||+++++++|.+|+||+|||||||+||||||++.+.+.+ ++ ++|
T Consensus 74 L~R~~aLe~DL~~l~G~~w~~~~~p~pa~~~Yv~rI~~~~~~~P~~LvAH~YvrYLGdlsGGQiI~k~l~r~~gl~~~~G 153 (238)
T CHL00168 74 LNRKESLEKDLNYYYGDDWKSIIEPSPATKIYVDRIHKISAKKPELLIAHAYTRYLGDLSGGQILKKIAQRAMNLSDSGG 153 (238)
T ss_pred hhhhHHHHHHHHHHcCCCccccCCCChHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCcC
Confidence 9999999999999999999 78899999999999999999999999999999999999999999988888887 64 699
Q ss_pred cccccccC--ChhHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023201 231 LEFYKWDG--ELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSFKHSGEILRLIL 285 (286)
Q Consensus 231 l~FY~F~g--d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~EA~~aF~ln~~i~~ei~ 285 (286)
++||.|+| +.+.||++||+.||++ ++|++++++||+||+.+|++|++||+||.
T Consensus 154 ~~Fy~F~~i~~~~~fk~~yr~~Ld~l--~l~e~e~~~iI~EA~~AF~lN~~vf~eL~ 208 (238)
T CHL00168 154 LAFYDFDNIEDDQEFKQIYKAALDNL--PLSDDQIQNIIAEANIAFNLNMKMFQELN 208 (238)
T ss_pred ccccCCCCcCcHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 8999999999999999 69999999999999999999999999985
No 2
>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-48 Score=340.72 Aligned_cols=197 Identities=21% Similarity=0.360 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHHhHHhhhhhcccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccccccccccc
Q 023201 77 GFVEEMRFVAMKLHTKEQAREGEKEVKEPEERPVTKWEPTVDGYLRFLVDSKLVYDTLEGIIEK-APFPSYAEFRNTGLE 155 (286)
Q Consensus 77 ~Ls~~LR~~Tr~~H~~a~a~~~ek~~~s~~~~~L~~g~~~~~~Y~~lL~~ly~VY~aLE~al~~-~~~p~l~~f~~p~L~ 155 (286)
.++..||.+|.+.|..+ |+ ..||++|++|.++++.|++++.++|+||.+||++++. ++||+++++++|+|+
T Consensus 2 nla~~lR~gt~~ah~~a-----En---v~fmkcfLkg~V~~e~f~kl~~n~yf~ysaleaa~~~~~d~~~l~~i~fp~ln 73 (238)
T COG5398 2 NLAFKLRQGTQKAHTVA-----EN---VGFMKCFLKGVVERESFRKLLANLYFVYSALEAATQIHKDNPILSSIYFPELN 73 (238)
T ss_pred cHHHHHHHHHHHHHHHH-----HH---HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhccchhhh
Confidence 47889999999999999 99 8899999999999999999999999999999999999 899999999999999
Q ss_pred cHHHHHHHHHHhhhcCC-CCCCCCCchhHHHHHHHHhhccCccchHhHHHHHHhhhchhhHHHHHHHHHH-h-cCCCCcc
Q 023201 156 RSEKLAKDLEWFKEQGY-TIPEPSSPGISYVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEK-I-LGGKELE 232 (286)
Q Consensus 156 Rt~aL~~DL~~l~g~~w-~~~~p~pa~~~Yv~~I~~la~~~P~~LlAh~YvrYlGdlsGGQiI~~~la~~-~-L~~~gl~ 232 (286)
|.+.|++||.+++|.+| +.+.|+|+++.||+||+.++...|.+||||+|+||||||||||+|. +|++. + |.+.|++
T Consensus 74 r~~tle~dl~~yyg~nwre~I~~sp~t~~yv~rv~~iaa~ap~lLIah~ytRyLGdlsggq~l~-ki~q~~~~L~~~gta 152 (238)
T COG5398 74 RKATLEKDLLYYYGNNWRENIQPSPATIAYVDRVRYIAATAPELLIAHNYTRYLGDLSGGQILK-KIAQSALELSEGGTA 152 (238)
T ss_pred hHHHhhcCHHHHhcccHHHhcCcChhHHHHHHHHHHHHhcCcchhHHHHHHHHHhcCCCcHHHH-HHHHHHhccccccce
Confidence 99999999999999999 7999999999999999999999999999999999999999999995 55554 4 7677999
Q ss_pred cccccC--ChhHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023201 233 FYKWDG--ELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSFKHSGEILRLI 284 (286)
Q Consensus 233 FY~F~g--d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~EA~~aF~ln~~i~~ei 284 (286)
||.|+. |.+.||..||+.||++ ++|++++++||+||+.||++|++||++|
T Consensus 153 Fy~F~dl~dek~fK~~YR~~ld~l--~ldeAt~~rIvdeAn~aF~~N~~~~~eL 204 (238)
T COG5398 153 FYEFEDLGDEKAFKDEYRQNLDSL--ELDEATKLRIVDEANDAFDFNMQMFQEL 204 (238)
T ss_pred eeeHhhcchhhhHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999994 9999999999999999 6999999999999999999999999997
No 3
>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1.14.99.3 from EC) (HO) [] is the microsomal enzyme that, in animals, carries out the oxidation of haem, it cleaves the haem ring at the alpha-methene bridge to form biliverdin and carbon monoxide []. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. In mammals there are three isozymes of haem oxygenase: HO-1 to HO-3. The first two isozymes differ in their tissue expression and their inducibility: HO-1 is highly inducible by its substrate haem and by various non-haem substances, while HO-2 is non-inducible. It has been suggested [] that HO-2 could be implicated in the production of carbon monoxide in the brain where it is said to act as a neurotransmitter. In the genome of the chloroplast of red algae as well as in cyanobacteria, there is a haem oxygenase (gene pbsA) that is the key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae []. A haem oxygenase is also present in the bacteria Corynebacterium diphtheriae (gene hmuO), where it is involved in the acquisition of iron from the host haem []. There is, in the central section of these enzymes, a well-conserved region centred on a histidine residue.; GO: 0004392 heme oxygenase (decyclizing) activity, 0006788 heme oxidation, 0055114 oxidation-reduction process; PDB: 1J77_A 1P3U_A 1P3V_A 1P3T_A 1WNW_B 1WNX_B 1IW1_B 1WNV_C 1V8X_A 1WZG_B ....
Probab=100.00 E-value=1.6e-42 Score=306.06 Aligned_cols=197 Identities=26% Similarity=0.403 Sum_probs=180.5
Q ss_pred hHHHHHHHHHHHHhHHhhhhhcccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccccccccccc
Q 023201 77 GFVEEMRFVAMKLHTKEQAREGEKEVKEPEERPVTKWEPTVDGYLRFLVDSKLVYDTLEGIIEK-APFPSYAEFRNTGLE 155 (286)
Q Consensus 77 ~Ls~~LR~~Tr~~H~~a~a~~~ek~~~s~~~~~L~~g~~~~~~Y~~lL~~ly~VY~aLE~al~~-~~~p~l~~f~~p~L~ 155 (286)
+|+++||++|+++|+++ |+ .++++.++.|..+++.|+++|.++|+||.+||.++++ .++|.+..++.|++.
T Consensus 2 ~l~~~Lr~~T~~~H~~~-----e~---~~~~~~l~~~~~~~~~Y~~~L~~~~~~y~~lE~~l~~~~~~~~~~~~~~~~l~ 73 (205)
T PF01126_consen 2 SLSQRLREATRDLHERL-----EK---SPFMKDLFAGDLSRDDYARFLQAFYHVYRALEAALDRNRDDPALAPLYFPELR 73 (205)
T ss_dssp SHHHHHHHHTHHHHHHH-----HT---SHHHHHHHTTSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTTGGGS-GHHH
T ss_pred cHHHHHHHHHHHHHHHH-----Hc---chhHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccCcchh
Confidence 68999999999999999 88 7778889999999999999999999999999999999 689999999999999
Q ss_pred cHHHHHHHHHHhhhcCC-CCCCCCCchhHHHHHHHHhhccCccchHhHHHHHHhhhchhhHHHHHHHHHHh-cCC--CCc
Q 023201 156 RSEKLAKDLEWFKEQGY-TIPEPSSPGISYVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKI-LGG--KEL 231 (286)
Q Consensus 156 Rt~aL~~DL~~l~g~~w-~~~~p~pa~~~Yv~~I~~la~~~P~~LlAh~YvrYlGdlsGGQiI~~~la~~~-L~~--~gl 231 (286)
|+++|++||++|.|.+| +.+.|+|++.+|+++|++++.++|..+|||+||+|+++++|||+|++.+.+.+ ++. .|+
T Consensus 74 R~~~L~~DL~~l~~~~~~~~~~~~~a~~~~~~~i~~~~~~~p~~~lg~~YV~egs~LgGg~ii~~~~~~~~~l~~~~~~~ 153 (205)
T PF01126_consen 74 RSAALEADLAALGGPDWRDDIEPSPATQAYVPHIRELAESSPALLLGHAYVLEGSTLGGGQIIRRLLARHLGLPEGFGGL 153 (205)
T ss_dssp THHHHHHHHHHHHCTTHHHHCHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT-BTTBCSG
T ss_pred HHHHHHHHHHHhhCCCcccccCCChhHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCCcccc
Confidence 99999999999999888 57788999999999999999999999999999999999999999987777777 653 599
Q ss_pred ccccccC--ChhHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023201 232 EFYKWDG--ELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSFKHSGEILRL 283 (286)
Q Consensus 232 ~FY~F~g--d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~EA~~aF~ln~~i~~e 283 (286)
+||.|++ +...+|++|++.||++ .+|++++++||+||+.+|++|++||+|
T Consensus 154 ~f~~~~~~~~~~~~w~~f~~~l~~~--~l~~~~~~~ii~~A~~~F~~~~~~~~~ 205 (205)
T PF01126_consen 154 SFFSFGGIEDTGALWRAFRAALDAA--ALTEEERDEIIEEAKAAFRLNIAWFRE 205 (205)
T ss_dssp GGGH-TTSSSHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998 9999999999999999 599999999999999999999999986
No 4
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens.
Probab=100.00 E-value=2.4e-39 Score=285.41 Aligned_cols=197 Identities=28% Similarity=0.492 Sum_probs=182.5
Q ss_pred hHHHHHHHHHHHHhHHhhhhhcccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccccccccccc
Q 023201 77 GFVEEMRFVAMKLHTKEQAREGEKEVKEPEERPVTKWEPTVDGYLRFLVDSKLVYDTLEGIIEK-APFPSYAEFRNTGLE 155 (286)
Q Consensus 77 ~Ls~~LR~~Tr~~H~~a~a~~~ek~~~s~~~~~L~~g~~~~~~Y~~lL~~ly~VY~aLE~al~~-~~~p~l~~f~~p~L~ 155 (286)
+|+++||++|+++|+++ |+ .++++.|+.|.++.+.|+++|.++|++|.++|..++. ..++...+++.+++.
T Consensus 1 ~~~~~Lr~~T~~~H~~~-----e~---~~~~~~l~~~~~s~~~Y~~~L~~~~~~~~~lE~~l~~~~~~~~~~~~~~~~~~ 72 (203)
T cd00232 1 SLSEELRAATRQLHEEA-----EN---LVFMKDLLKGFLSREGYARFLANLYLVYRALEALLEASKDNPYLAPLYLPELE 72 (203)
T ss_pred CHHHHHHHHHHHHHHHH-----Hc---hHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccCcccc
Confidence 47899999999999999 88 7778889999999999999999999999999999999 567777778899999
Q ss_pred cHHHHHHHHHHhhhcCCC-CCCCCCchhHHHHHHHHhhccCccchHhHHHHHHhhhchhhHHHHHHHHHHh-cCCCCccc
Q 023201 156 RSEKLAKDLEWFKEQGYT-IPEPSSPGISYVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKI-LGGKELEF 233 (286)
Q Consensus 156 Rt~aL~~DL~~l~g~~w~-~~~p~pa~~~Yv~~I~~la~~~P~~LlAh~YvrYlGdlsGGQiI~~~la~~~-L~~~gl~F 233 (286)
|+++|++||++|.|..|. ...|.+++ .|+++|...+..+|..+|||+||+|.+++||||+|++++.+++ +++.|++|
T Consensus 73 r~~~L~~DL~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~YV~egs~l~GG~~i~~~l~~~~~~~~~~~~f 151 (203)
T cd00232 73 RAAALEKDLAYLGGSDWRVREPPLPAA-AYAARLREIAEENPALLLGHAYVRYGADLSGGQVLAKIAQRALLLEGKGLAF 151 (203)
T ss_pred chHHHHHHHHHHhCCCccccCCCChHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCccCcc
Confidence 999999999999888784 44566666 9999999999999999999999999999999999999999998 67899999
Q ss_pred ccccC--ChhHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023201 234 YKWDG--ELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSFKHSGEILRLI 284 (286)
Q Consensus 234 Y~F~g--d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~EA~~aF~ln~~i~~ei 284 (286)
|.|+| +.+.+|+.|+..||++ .+|++++++||+||+.+|++|.+||.+|
T Consensus 152 ~~~~g~~~~~~~w~~f~~~l~~~--~~~~~~~~~~i~~A~~~F~~~~~~~~~~ 202 (203)
T cd00232 152 YAFHGIADRGLFKREFREALDAL--PLDEEERQRVVAEARAAFRLNGQVFREL 202 (203)
T ss_pred ccCCCcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99997 7889999999999999 5999999999999999999999999987
No 5
>KOG4480 consensus Heme oxygenase [Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.5e-26 Score=208.67 Aligned_cols=278 Identities=47% Similarity=0.700 Sum_probs=231.1
Q ss_pred CCccccccchhhhccCCcccccccccCCCCCCCCCCCCccccccccccccccccceeeeecccccCCCCCCCCCchhHHH
Q 023201 1 MASLTSISQSQSFLMKPHLINTAITSARPNYFSSNFLPLWSRSFFKLPRMTQKNGVVVVSATTAEKPKKRYPGEAKGFVE 80 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~Ls~ 80 (286)
||...+.++++++-.++.+. .-.+.++.++....++ ..+...+..+.-|+.|+++..+..++|||+..++.+
T Consensus 1 Ma~~~~~~~~~~~~~~~kl~-------~~e~~d~ae~~~~~R~-~~~~~~n~t~~l~~~~t~a~~~~~~~y~~e~~~~~E 72 (283)
T KOG4480|consen 1 MAASFETSAGLDFSESLKLA-------TKEVHDSAENIEFLRK-HLLLKGNVTPELVQLSTAALYFWYKAYPGETEGFKE 72 (283)
T ss_pred CCCcccCCccccchhhhhhh-------HHHHhhhhhhHHHHHH-HHHhhcCCchHHHHHHHHHHHHHHHhCcchhhhhhH
Confidence 88888899998888777776 3333333222222222 112234434556668888899999999999999999
Q ss_pred HHHHHHHHHhHHhhhhhcccccCCcccccccCCCCCHHH---HHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccH
Q 023201 81 EMRFVAMKLHTKEQAREGEKEVKEPEERPVTKWEPTVDG---YLRFLVDSKLVYDTLEGIIEKAPFPSYAEFRNTGLERS 157 (286)
Q Consensus 81 ~LR~~Tr~~H~~a~a~~~ek~~~s~~~~~L~~g~~~~~~---Y~~lL~~ly~VY~aLE~al~~~~~p~l~~f~~p~L~Rt 157 (286)
.+|++.+.+|..-+..++|....++--.-...|..+.++ |.++|++++.||+++|..+.+.+.+.+..+...+|.|.
T Consensus 73 ~~~F~~~~f~~~~el~e~~a~~~d~~~~~~~~W~e~ie~~pa~~kyl~~~~~v~~t~e~ll~~s~~~~Y~g~~s~GLek~ 152 (283)
T KOG4480|consen 73 EMRFVAMRFPSTEELHEKEALEQDPEEFFGENWEETIEGEPAYQKYLVDSKLVADTEEELLVASAYTRYAGLLSGGLEKA 152 (283)
T ss_pred HHhhHhhhcCCHHHHhHHhhhhcChhhhccccccccccCCHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHhhccHHHHH
Confidence 999999999965544444443212222234678888887 99999999999999999999977777888888899999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCchhHHHHHHHHhhccCccchHhHHHHHHhhhchhhHHHHHHHHHHhcCCCCccccccc
Q 023201 158 EKLAKDLEWFKEQGYTIPEPSSPGISYVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKILGGKELEFYKWD 237 (286)
Q Consensus 158 ~aL~~DL~~l~g~~w~~~~p~pa~~~Yv~~I~~la~~~P~~LlAh~YvrYlGdlsGGQiI~~~la~~~L~~~gl~FY~F~ 237 (286)
+.++.||.++..+....+.+.++.+.|..++.+.++.+|.++|+|+|..|..+..|||+|++++++..+++..+.||.|+
T Consensus 153 ~q~~~dl~w~~~q~~~~pe~~~a~k~~~~y~k~~~E~~pq~~I~~~~~iyf~~~~~f~~~~~~v~~~ile~~~~ef~~~~ 232 (283)
T KOG4480|consen 153 EQKELDLPWTGEQFYTFPELANAGKTYQKYLKNNLELDPQRFICEFYNIYFAHIAGFQMLGRKVAEEILENKELEFDGWD 232 (283)
T ss_pred HHHHhhcchhhhhccccCCCCcHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccc
Confidence 99999999996566678899999999999999999999999999999999999999999999999999998889999999
Q ss_pred CChhHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 023201 238 GELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSFKHSGEILRLILS 286 (286)
Q Consensus 238 gd~~~~k~~yr~~Ld~l~~~l~~eek~~iI~EA~~aF~ln~~i~~ei~~ 286 (286)
|+..++-+++++.||..++.|+.+++++|+.|...+|.+-..|++.|+|
T Consensus 233 ~~~~~~~~~v~ekln~~~~~~~r~~~~~~L~~~~l~fif~~~iv~~~L~ 281 (283)
T KOG4480|consen 233 GRFSELLQNVREKLNKEGEAWTREEKNACLLETSLAFIFVGEIVRLILS 281 (283)
T ss_pred hhhhHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999875
No 6
>KOG4480 consensus Heme oxygenase [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.1e-19 Score=167.75 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=170.9
Q ss_pred CCCchhHHHHHHHHHHHHhHHhhhhhcccccCCccccc--ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccc
Q 023201 72 PGEAKGFVEEMRFVAMKLHTKEQAREGEKEVKEPEERP--VTKWEPTVDGYLRFLVDSKLVYDTLEGIIEK-APFPSYAE 148 (286)
Q Consensus 72 p~~~~~Ls~~LR~~Tr~~H~~a~a~~~ek~~~s~~~~~--L~~g~~~~~~Y~~lL~~ly~VY~aLE~al~~-~~~p~l~~ 148 (286)
+.+.-.+++.++.+|...|+.+ ++ ..++.. +..|..+.+....-...+++.|..++..... .+++.+.+
T Consensus 7 ~~~~~~~~~~~kl~~~e~~d~a-----e~---~~~~R~~~~~~~n~t~~l~~~~t~a~~~~~~~y~~e~~~~~E~~~F~~ 78 (283)
T KOG4480|consen 7 TSAGLDFSESLKLATKEVHDSA-----EN---IEFLRKHLLLKGNVTPELVQLSTAALYFWYKAYPGETEGFKEEMRFVA 78 (283)
T ss_pred CCccccchhhhhhhHHHHhhhh-----hh---HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhCcchhhhhhHHHhhHh
Confidence 3445567888999999999999 76 566663 8899999999999999999999999998888 78888888
Q ss_pred cccc---ccccHHHHHHHHHHhhhcCC-CCCCCCCchhHHHHHHHHhhccCccchHhHHHHHHhhhchhhHHHHHHHHHH
Q 023201 149 FRNT---GLERSEKLAKDLEWFKEQGY-TIPEPSSPGISYVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEK 224 (286)
Q Consensus 149 f~~p---~L~Rt~aL~~DL~~l~g~~w-~~~~p~pa~~~Yv~~I~~la~~~P~~LlAh~YvrYlGdlsGGQiI~~~la~~ 224 (286)
.++| ++.|.+++.+|+++++|.+| +.++..|+.+.|+.|++.++...|..|++|+|+||+|+++|| | .++++.
T Consensus 79 ~~f~~~~el~e~~a~~~d~~~~~~~~W~e~ie~~pa~~kyl~~~~~v~~t~e~ll~~s~~~~Y~g~~s~G--L-ek~~q~ 155 (283)
T KOG4480|consen 79 MRFPSTEELHEKEALEQDPEEFFGENWEETIEGEPAYQKYLVDSKLVADTEEELLVASAYTRYAGLLSGG--L-EKAEQK 155 (283)
T ss_pred hhcCCHHHHhHHhhhhcChhhhccccccccccCCHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHhhccH--H-HHHHHH
Confidence 8887 59999999999999999999 688889999999999999999999999999999999999999 5 566665
Q ss_pred h--cCCCCcccccccC--ChhHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023201 225 I--LGGKELEFYKWDG--ELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSFKHSGEILRLIL 285 (286)
Q Consensus 225 ~--L~~~gl~FY~F~g--d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~EA~~aF~ln~~i~~ei~ 285 (286)
. ++.-|..||.|+. .+...+..|+ .|.+ .+++ +.+|.|+..+|-.|+++++.|+
T Consensus 156 ~~dl~w~~~q~~~~pe~~~a~k~~~~y~--k~~~--E~~p---q~~I~~~~~iyf~~~~~f~~~~ 213 (283)
T KOG4480|consen 156 ELDLPWTGEQFYTFPELANAGKTYQKYL--KNNL--ELDP---QRFICEFYNIYFAHIAGFQMLG 213 (283)
T ss_pred HhhcchhhhhccccCCCCcHHHHHHHHH--HHhh--ccCh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4455577999985 7788899999 7777 4777 7899999999999999998775
No 7
>COG3230 HemO Heme oxygenase [Inorganic ion transport and metabolism]
Probab=99.66 E-value=3e-15 Score=130.40 Aligned_cols=179 Identities=17% Similarity=0.178 Sum_probs=141.9
Q ss_pred chhHHHHHHHHHHHHhHHhhhhhcccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccc-
Q 023201 75 AKGFVEEMRFVAMKLHTKEQAREGEKEVKEPEERPVTKWEPTVDGYLRFLVDSKLVYDTLEGIIEKAPFPSYAEFRNTG- 153 (286)
Q Consensus 75 ~~~Ls~~LR~~Tr~~H~~a~a~~~ek~~~s~~~~~L~~g~~~~~~Y~~lL~~ly~VY~aLE~al~~~~~p~l~~f~~p~- 153 (286)
....+++||..|+++|..+|+++- .....++++.|.+++...|.+..+||..+.....|. .+..++
T Consensus 8 ~~~~~krLk~~T~d~H~eld~lv~-----------~~~pf~sr~nyl~f~~~q~~f~~~Le~~~r~~~l~~--~lp~l~~ 74 (196)
T COG3230 8 ALTRAKRLKAATRDLHDELDSLVP-----------SVQPFLSRRNYLKFLKRQYLFHKPLEHILRDAELPK--ALPELEY 74 (196)
T ss_pred chHHHHHHHHHHHhHHHHHHHhcc-----------ccCccccHHHHHHHHHHHHHHhhhHHHHHccccchh--hcccHHH
Confidence 367889999999999999944333 346677899999999999999999999998744332 333344
Q ss_pred cccHHHHHHHHHHhhhcCC---CCCCCCCchhHHHHHHHHhhccCccchHhHHHHHHhhhchhhHHHHHHHHHHh-c-CC
Q 023201 154 LERSEKLAKDLEWFKEQGY---TIPEPSSPGISYVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKI-L-GG 228 (286)
Q Consensus 154 L~Rt~aL~~DL~~l~g~~w---~~~~p~pa~~~Yv~~I~~la~~~P~~LlAh~YvrYlGdlsGGQiI~~~la~~~-L-~~ 228 (286)
+.|..+|+.||..+ |... +.+...|.. +-+...+|..||+ +|+..||+.|-|+.++ + + ++
T Consensus 75 r~r~~~l~~DLadl-G~~~~~~d~p~~~~~~------------t~~aea~GwlYV~-EGstLGaAfL~K~aa~-L~l~~e 139 (196)
T COG3230 75 RARYDALEQDLADL-GEEPPKFDKPRCEPPL------------TLAAEAFGWLYVA-EGSTLGAAFLFKHAAK-LGLNPE 139 (196)
T ss_pred HHHHHHHHHHHHHh-CCCCCccccccccCCc------------hhHHHhhhhhhhc-cccchHHHHHHHHHHH-hcCCcc
Confidence 88999999999998 5432 122112211 1234578999999 8999999999988887 4 3 56
Q ss_pred CCcccccccC-ChhHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023201 229 KELEFYKWDG-ELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSFKHSGEILRL 283 (286)
Q Consensus 229 ~gl~FY~F~g-d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~EA~~aF~ln~~i~~e 283 (286)
.|.+.+.-+| ....-|+.|-+.||++ .+++|+...+++.|..+|.....++.+
T Consensus 140 ~garhLag~~~grG~~WrsF~e~L~~~--~l~~E~e~~av~gA~~aF~~fr~~l~~ 193 (196)
T COG3230 140 FGARHLAGYGDGRGKRWRSFVEHLDAI--NLTPEAEAEAVAGARAAFAAFRRVLQE 193 (196)
T ss_pred cchHhhcCCCCCCCccHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888877766 5677899999999999 799999999999999999999998876
No 8
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=97.94 E-value=0.0002 Score=72.64 Aligned_cols=188 Identities=13% Similarity=0.179 Sum_probs=117.9
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHHHhHHhhhhhcccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh---
Q 023201 64 AEKPKKRYPGEAKGFVEEMRFVAMKLHTKEQAREGEKEVKEPEERPVTKWEPTVDGYLRFLVDSKLVYDTLEGIIEK--- 140 (286)
Q Consensus 64 ~~~~~~~~p~~~~~Ls~~LR~~Tr~~H~~a~a~~~ek~~~s~~~~~L~~g~~~~~~Y~~lL~~ly~VY~aLE~al~~--- 140 (286)
++.-++.+|+.+..|+++|++..+.+=.+. -+ +||+..|..|.++.+.|..+|.|=|......-+++..
T Consensus 306 ~~~~~~~~~~~~~~fs~~L~~~~~~~w~~~-----~~---HpFv~~L~~GtL~~~~F~~Yl~QD~~yL~~~~r~~a~~~a 377 (530)
T PRK14713 306 AEPAPDAVVGPAGPFTAALWQASGPIREAI-----ED---LPFVRALADGTLPEEAFEFYLAQDALYLNGYSRALARLAA 377 (530)
T ss_pred ccccccccCCCCccHHHHHHHhhHHHHHHH-----Hc---ChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999999999999999988 77 8999999999999999999999877766665565544
Q ss_pred -CCCCccccccccccccHHHHHHHHHHhh--hcCC-CCCCCCCchhHHHHHHHHhhcc-CccchHh---HHHHHHhhhch
Q 023201 141 -APFPSYAEFRNTGLERSEKLAKDLEWFK--EQGY-TIPEPSSPGISYVQYLEELSEK-DPQAFIC---HFYNIYFAHSA 212 (286)
Q Consensus 141 -~~~p~l~~f~~p~L~Rt~aL~~DL~~l~--g~~w-~~~~p~pa~~~Yv~~I~~la~~-~P~~LlA---h~YvrYlGdls 212 (286)
+.++....+....+. ..++.-++++. -..| -...+.|+|.+|.++|.+.+.. +...+++ -|+..|
T Consensus 378 ka~~~e~~~~~~~~~~--~~~~~E~~~h~~~~~~~~~~~~~~p~~~aY~~~l~~~a~~~~~~~~l~AllPC~~~Y----- 450 (530)
T PRK14713 378 LAPDPAEQVFWAQSAQ--ACLEVESELHRSWLGDRDADTAPSPVTLAYTDFLLARAAGGSYAVGAAAVLPCFWLY----- 450 (530)
T ss_pred hCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCccCCCChHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHH-----
Confidence 232211101000000 11111111111 1123 2467899999999999998654 4433333 444555
Q ss_pred hhHHHHHHHHHHhcCCCCcccccc---c-C-ChhHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 023201 213 GGRMIGKKVAEKILGGKELEFYKW---D-G-ELPKLLQNVRDKLNKVAESWTREEKNRCLE 268 (286)
Q Consensus 213 GGQiI~~~la~~~L~~~gl~FY~F---~-g-d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~ 268 (286)
..|++++.+.....++-.|..| + + +-.+.-+.+++.+|++++..++++++++.+
T Consensus 451 --~~ig~~l~~~~~~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~~~~~~~~~ 509 (530)
T PRK14713 451 --AEVGAELHARAGNPDDHPYAEWLQTYADPEFAAATRRAIAFVDRAFRAASPAERAAMAR 509 (530)
T ss_pred --HHHHHHHHhhccCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 2344454332111122223233 2 2 345566778888999987888888765443
No 9
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=96.90 E-value=0.024 Score=57.13 Aligned_cols=185 Identities=11% Similarity=0.173 Sum_probs=107.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhHHhhhhhcccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh----CCC
Q 023201 68 KKRYPGEAKGFVEEMRFVAMKLHTKEQAREGEKEVKEPEERPVTKWEPTVDGYLRFLVDSKLVYDTLEGIIEK----APF 143 (286)
Q Consensus 68 ~~~~p~~~~~Ls~~LR~~Tr~~H~~a~a~~~ek~~~s~~~~~L~~g~~~~~~Y~~lL~~ly~VY~aLE~al~~----~~~ 143 (286)
++-||+-..+|+++|++.+..+=+++ -+ +||+..|..|.++++.|..+|.|=|......=+++.. ..+
T Consensus 3 ~~~~~~~~~~fs~~L~~~~~~~~~~~-----~~---HpFv~~l~~GtL~~~~F~~Yl~QD~~Yl~~~~r~~a~~~~ka~~ 74 (504)
T PTZ00347 3 QFYHEPVFGGLSEALWKENQDLAMMS-----LH---LPFVQGLGDGTLDQNAFRTYIAQDTLYLNGYIRILSYCITKSDV 74 (504)
T ss_pred ccCCCCCCCCHHHHHHHhHHHHHHHH-----hC---CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 34578888999999999999999999 77 8999999999999999999998876555554454443 222
Q ss_pred Cc-cccccccccccHHHHHHHHHHhhh---cCCCCCCCCCchhHHHHHHHHhhccCc---cch---HhHHHHHHhhhchh
Q 023201 144 PS-YAEFRNTGLERSEKLAKDLEWFKE---QGYTIPEPSSPGISYVQYLEELSEKDP---QAF---ICHFYNIYFAHSAG 213 (286)
Q Consensus 144 p~-l~~f~~p~L~Rt~aL~~DL~~l~g---~~w~~~~p~pa~~~Yv~~I~~la~~~P---~~L---lAh~YvrYlGdlsG 213 (286)
+. ...+. +.. ...-++...+.. .+-+...+.|+|.+|++++..++.... ..+ +.-|+-.|
T Consensus 75 ~~~~~~~~--~~~--~~~~~~e~~~h~~~~~~~~~~~~~p~~~aY~~~l~~~a~~g~~~~~~~l~Al~pC~~~Y------ 144 (504)
T PTZ00347 75 TATGGGLL--ELL--KGVLEELKNCHHHYIDNPDAAGPEAACRKYVDFLLASGNADTLGPSVVIAAVIPCARLY------ 144 (504)
T ss_pred HHHHHHHH--HHH--HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH------
Confidence 21 11110 000 011111111110 111245689999999999999876542 222 33445555
Q ss_pred hHHHHHHHHHHhcCCCCcccccc---cC--ChhHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Q 023201 214 GRMIGKKVAEKILGGKELEFYKW---DG--ELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSFKHSG 278 (286)
Q Consensus 214 GQiI~~~la~~~L~~~gl~FY~F---~g--d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~EA~~aF~ln~ 278 (286)
..|++++....-..++-.|..| +. +-.+.-.++.+.+|+++ ..++ ++++..+|.-..
T Consensus 145 -~~ig~~l~~~~~~~~~~~y~~Wi~~y~~~~f~~~~~~~~~~ld~~~---~~~~----~~~~~~~F~~~~ 206 (504)
T PTZ00347 145 -AWVGQELTNEVELTESHPFRRWLLSYSDEPINTSVEQLESLLDKYI---RPGE----FSEVAQAYRRAM 206 (504)
T ss_pred -HHHHHHHHhccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHHHh---chhh----HHHHHHHHHHHH
Confidence 2344454432111122223333 22 23456667778888874 2233 344566776543
No 10
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.84 E-value=0.021 Score=60.47 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=107.9
Q ss_pred CCchhHHHHHHHHHHHHhHHhhhhhcccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh----CCCCcccc
Q 023201 73 GEAKGFVEEMRFVAMKLHTKEQAREGEKEVKEPEERPVTKWEPTVDGYLRFLVDSKLVYDTLEGIIEK----APFPSYAE 148 (286)
Q Consensus 73 ~~~~~Ls~~LR~~Tr~~H~~a~a~~~ek~~~s~~~~~L~~g~~~~~~Y~~lL~~ly~VY~aLE~al~~----~~~p~l~~ 148 (286)
+.+.+|+++|++...++=.+. -+ +||...|..|.++.+.|..+|.|=|.....+=+++.. +++.....
T Consensus 541 ~~~~~f~~~L~~~~~~~w~~~-----~~---HPFv~~L~~GtL~~e~F~~YL~QD~~YL~~yar~~a~~~aka~~~~~~~ 612 (755)
T PRK09517 541 EPAGPFTRALWEASGDIIAEI-----ND---SDFIRMLGDGTLRRPEFDFYIDQDAQYLRQYSRALARLSSIAPDSHAQV 612 (755)
T ss_pred CCCCChHHHHHHHhHHHHHHH-----hc---ChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 345789999999999998888 77 8999999999999999999999988777766666654 22211000
Q ss_pred ccccccccHHHHHHHHHHh--hhcCC-CCCCCCCchhHHHHHHHHhhccCc-cch---HhHHHHHHhhhchhhHHHHHHH
Q 023201 149 FRNTGLERSEKLAKDLEWF--KEQGY-TIPEPSSPGISYVQYLEELSEKDP-QAF---ICHFYNIYFAHSAGGRMIGKKV 221 (286)
Q Consensus 149 f~~p~L~Rt~aL~~DL~~l--~g~~w-~~~~p~pa~~~Yv~~I~~la~~~P-~~L---lAh~YvrYlGdlsGGQiI~~~l 221 (286)
+....+. ..+..-+.+. +-..| ...+++|++.+|.++|-+.+.... ..+ +.-|+..| ..|++++
T Consensus 613 ~~~~~~~--~~~~~E~~~h~~~~~~~~~~~~~~p~~~aYt~~l~~~a~~g~~~~~laAllPC~w~Y-------~~ig~~l 683 (755)
T PRK09517 613 EWAQSAA--ECIVVEAELHRSYLSGKEAPSAPSPVTMAYTDFLIARTYTEDYVVGVAAVLPCYWLY-------AEIGLML 683 (755)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHhcCcCCCCChHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 0000000 0011111111 01123 246789999999999999876532 223 33444555 3344454
Q ss_pred HHHhcCCCCcccccc---cC--ChhHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 023201 222 AEKILGGKELEFYKW---DG--ELPKLLQNVRDKLNKVAESWTREEKNRCLE 268 (286)
Q Consensus 222 a~~~L~~~gl~FY~F---~g--d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~ 268 (286)
.+.. ..+..|..| +. +-.+.-+.+++.+|++++..++++++++.+
T Consensus 684 ~~~~--~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~~~~~~l~~ 733 (755)
T PRK09517 684 AEQN--HDEHPYKDWLNTYSGEEFIAGTRAAIARVEKALENAGPEQRVDAAR 733 (755)
T ss_pred Hhcc--CCCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 4311 112223333 22 234556678888999988889888766543
No 11
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=96.32 E-value=0.0045 Score=54.23 Aligned_cols=169 Identities=17% Similarity=0.209 Sum_probs=95.3
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh----CCCCccc-ccc---ccccccHHHHHHHHHHhhhcCCC--
Q 023201 104 EPEERPVTKWEPTVDGYLRFLVDSKLVYDTLEGIIEK----APFPSYA-EFR---NTGLERSEKLAKDLEWFKEQGYT-- 173 (286)
Q Consensus 104 s~~~~~L~~g~~~~~~Y~~lL~~ly~VY~aLE~al~~----~~~p~l~-~f~---~p~L~Rt~aL~~DL~~l~g~~w~-- 173 (286)
.||+..+..|.++.+.|..+|.|=|+.-...=.++.. ..++... .+. .........+-.++..-+|-+++
T Consensus 14 HPFv~~l~~GtL~~~~f~~Yl~QD~~yl~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~~ 93 (210)
T PF03070_consen 14 HPFVQELADGTLPKEAFRYYLIQDYHYLKHFARALALLASKAPDPEEQRELLSRLIQEIEEELELHEDFAEELGISREDL 93 (210)
T ss_dssp SHHHHHHHTTESEHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred CHHHHHHhCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 7899999999999999999999988776666665544 2332211 010 00111111111222222243332
Q ss_pred -CCCCCCchhHHHHHHHHhhcc-CccchHhHHHHHHhhhchhhHHHHHHHHHHhcCCCCccccccc---C--ChhHHHHH
Q 023201 174 -IPEPSSPGISYVQYLEELSEK-DPQAFICHFYNIYFAHSAGGRMIGKKVAEKILGGKELEFYKWD---G--ELPKLLQN 246 (286)
Q Consensus 174 -~~~p~pa~~~Yv~~I~~la~~-~P~~LlAh~YvrYlGdlsGGQiI~~~la~~~L~~~gl~FY~F~---g--d~~~~k~~ 246 (286)
.++|+|+|..|++++..++.. ++...++-.+.-+.+=.-=|+.+ .+..-...+..|+.|= + +-....+.
T Consensus 94 ~~~~~~p~~~~y~~~l~~~a~~~~~~~~l~al~pc~~~Y~~~~~~~----~~~~~~~~~~~y~~wi~~y~~~~f~~~~~~ 169 (210)
T PF03070_consen 94 ENIEPSPATRAYTDFLLSLAQTGSLAEGLAALLPCEWIYAEIGKRL----AEKLRAPEDNPYQEWIDMYASEEFEAFVEW 169 (210)
T ss_dssp HHSTC-HHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH----HHHCSTTSSHHHHHHHHHHHSHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH----hccccCCCCccHHHHHHhcCCHHHHHHHHH
Confidence 368999999999999998754 45556666665544333333333 3222112332344432 2 33556677
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Q 023201 247 VRDKLNKVAESWTREEKNRCLEETELSFKH 276 (286)
Q Consensus 247 yr~~Ld~l~~~l~~eek~~iI~EA~~aF~l 276 (286)
..+.+|.++...++++++++.+-...+-++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 199 (210)
T PF03070_consen 170 LEELLDELAAEASDEERERLEEIFRRSCEL 199 (210)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 788899887666666665555544444333
No 12
>COG0819 TenA Putative transcription activator [Transcription]
Probab=95.67 E-value=0.39 Score=43.86 Aligned_cols=169 Identities=18% Similarity=0.151 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHhHHhhhhhcccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh---CCCCccccccccc
Q 023201 77 GFVEEMRFVAMKLHTKEQAREGEKEVKEPEERPVTKWEPTVDGYLRFLVDSKLVYDTLEGIIEK---APFPSYAEFRNTG 153 (286)
Q Consensus 77 ~Ls~~LR~~Tr~~H~~a~a~~~ek~~~s~~~~~L~~g~~~~~~Y~~lL~~ly~VY~aLE~al~~---~~~p~l~~f~~p~ 153 (286)
.|++.|+....++=.+. -+ .+|++.|..|.+.++.+.-+|.|=|.....+-+++.. +..+. +.
T Consensus 2 ~f~~~L~~~~~~~W~~~-----~~---H~FV~~L~~GtL~~~~F~~YL~QDy~YL~~~~ra~~~~~~ka~~~------~~ 67 (218)
T COG0819 2 MFSEELIRAAQPIWQKY-----IE---HPFVQELADGTLPREKFQFYLVQDYLYLVNFARALALLASKAPDL------EL 67 (218)
T ss_pred chHHHHHHHhHHHHHHH-----cC---CHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH------HH
Confidence 47788888888887777 55 7999999999999999999999988887777777765 12111 11
Q ss_pred cccHHHHH-----------HHHHHhhhcCC---CCCCCCCchhHHHHHHHHhhccCcc--chHh--HHHHHHhhhchhhH
Q 023201 154 LERSEKLA-----------KDLEWFKEQGY---TIPEPSSPGISYVQYLEELSEKDPQ--AFIC--HFYNIYFAHSAGGR 215 (286)
Q Consensus 154 L~Rt~aL~-----------~DL~~l~g~~w---~~~~p~pa~~~Yv~~I~~la~~~P~--~LlA--h~YvrYlGdlsGGQ 215 (286)
+.+...+. +.+.--+|.+- ....|.|++.+|.++|-..+..... .+.| -|+-.| .
T Consensus 68 ~~~~~~~~~~~~~~E~~~h~~~~~~lgis~~~~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y-------~ 140 (218)
T COG0819 68 MEELAKIIQFLVEGEMELHERLAEELGISLDELLKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGY-------A 140 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------H
Confidence 11111111 11222223221 1458899999999999988765421 1111 222233 4
Q ss_pred HHHHHHHHHhcCCCCccccc----cc-C-ChhHHHHHHHHHHHhhccCCCHHHHHHHH
Q 023201 216 MIGKKVAEKILGGKELEFYK----WD-G-ELPKLLQNVRDKLNKVAESWTREEKNRCL 267 (286)
Q Consensus 216 iI~~~la~~~L~~~gl~FY~----F~-g-d~~~~k~~yr~~Ld~l~~~l~~eek~~iI 267 (286)
.|++++.+..-. ....+|. ++ + +-...-+..++.||++++..++++.+++.
T Consensus 141 eig~~~~~~~~~-~~~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~~~~~~~~l~ 197 (218)
T COG0819 141 EIGKRLKAKPRA-SPNPPYQEWIDTYASEEFQEAVEELEALLDSLAENSSEEELEKLK 197 (218)
T ss_pred HHHHHHHhcccc-CCCCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 566666554411 1234443 11 2 33455667788899998777777765543
No 13
>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional
Probab=95.56 E-value=0.26 Score=45.83 Aligned_cols=187 Identities=13% Similarity=0.111 Sum_probs=111.3
Q ss_pred CCCchhHHHHHHHHHHHHhHHhhhhhcccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHH---HHHHHhCCCCcccc
Q 023201 72 PGEAKGFVEEMRFVAMKLHTKEQAREGEKEVKEPEERPVTKWEPTVDGYLRFLVDSKLVYDTL---EGIIEKAPFPSYAE 148 (286)
Q Consensus 72 p~~~~~Ls~~LR~~Tr~~H~~a~a~~~ek~~~s~~~~~L~~g~~~~~~Y~~lL~~ly~VY~aL---E~al~~~~~p~l~~ 148 (286)
|-....|.++||.....-|. - .||-..+..|+++++.-..+..+-|+.-..+ -.++. +.
T Consensus 8 ~~s~~eF~~~L~~~~~~yh~-~----------HPF~~~~~~Gklt~~qlq~wa~nrYyyq~~~P~kdaaI~-------S~ 69 (246)
T PRK05157 8 LLSPEEFEAALRAIGARYHI-H----------HPFHRLLHEGKLTREQIQAWVANRFYYQINIPLKDAAIL-------SN 69 (246)
T ss_pred CCCHHHHHHHHHHHHHhhcc-c----------ChHHHHHHcCCCCHHHHHHHHHHhchhhccchHHHHHHH-------Hc
Confidence 44567899999998865554 3 7888889999999999888888833221111 12222 22
Q ss_pred cccccccc---HHHHHHH--------------HHHhhhcCC---CCC-CCCCchhHHHHHHHHhhccCc-cchHhHHHHH
Q 023201 149 FRNTGLER---SEKLAKD--------------LEWFKEQGY---TIP-EPSSPGISYVQYLEELSEKDP-QAFICHFYNI 206 (286)
Q Consensus 149 f~~p~L~R---t~aL~~D--------------L~~l~g~~w---~~~-~p~pa~~~Yv~~I~~la~~~P-~~LlAh~Yvr 206 (286)
...++.+| ..-++.| +..=+|.+- ... ..+|.|+..|+.-...+...| ..-+|-.|+-
T Consensus 70 c~D~e~Rr~w~~ri~d~dG~~~~~ghie~Wlrf~ealGl~re~v~s~~~~lP~tr~aVday~~~~r~~~~~eavas~ltE 149 (246)
T PRK05157 70 CPDRETRREWRQRILDHDGDGGGEGGIERWLRLGEAVGLDRDYVLSLRGVLPGVRFAVDAYVNFARRAPWLEAVASSLTE 149 (246)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHcCCCHHHHhccccCChHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 22233333 3334444 111123321 123 367888888888888877666 4567777773
Q ss_pred HhhhchhhHHHHH---HHHHHh--cCCCCcccccccC--ChhHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 023201 207 YFAHSAGGRMIGK---KVAEKI--LGGKELEFYKWDG--ELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSFKHSGE 279 (286)
Q Consensus 207 YlGdlsGGQiI~~---~la~~~--L~~~gl~FY~F~g--d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~EA~~aF~ln~~ 279 (286)
-. =-+|.+. -+.+.| ++.+|+.||.-.- +..+..-.....++.+ -|+++++++++.+...=+.--.
T Consensus 150 ~~----~P~I~~~ri~gl~~~Y~~~~~e~l~yF~~h~~~a~~Dvehal~~~l~~~---~t~e~q~~al~al~~k~d~Lw~ 222 (246)
T PRK05157 150 LF----APQIHQERLAGWPEHYPWIDPEGLAYFRSRLTQAPRDVEHGLAYVLDHA---TTREQQERALEALQFKLDVLWS 222 (246)
T ss_pred Hh----hhHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhccchhHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHH
Confidence 21 2233333 345555 4678999977542 2244555555666766 5789999988877665554444
Q ss_pred HHHH
Q 023201 280 ILRL 283 (286)
Q Consensus 280 i~~e 283 (286)
.++.
T Consensus 223 ~LDa 226 (246)
T PRK05157 223 MLDA 226 (246)
T ss_pred HHHH
Confidence 4443
No 14
>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C. This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.
Probab=93.70 E-value=1.5 Score=40.61 Aligned_cols=187 Identities=13% Similarity=0.086 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHH-HHhHHhhhhhcccccCCcccccccCCCCCHHHHHHHHHH-HHHHHH--HHHHHHHh-CCCCcccccc
Q 023201 76 KGFVEEMRFVAM-KLHTKEQAREGEKEVKEPEERPVTKWEPTVDGYLRFLVD-SKLVYD--TLEGIIEK-APFPSYAEFR 150 (286)
Q Consensus 76 ~~Ls~~LR~~Tr-~~H~~a~a~~~ek~~~s~~~~~L~~g~~~~~~Y~~lL~~-ly~VY~--aLE~al~~-~~~p~l~~f~ 150 (286)
+.|-.+||...+ .-|. + .||-..+..|.++++.-..+..+ +|+... .-..++.. +.++.+...
T Consensus 4 ~ef~~~Lr~~~~~~yh~--------~---HPF~~~~~~GkLt~~ql~~wa~nrYyyq~~iP~kdAAi~s~c~D~e~Rr~- 71 (239)
T TIGR02111 4 EQFEAALRDIGARRYHD--------L---HPFHALLHDGKLTRDQVQAWVLNRYYYQANIPLKDAAILARCPDPQLRRI- 71 (239)
T ss_pred HHHHHHHHHHhcccccc--------c---CcHHHHHhcCCCCHHHHHHHHHHhhhhhhcccHHHHHHHHcCCCHHHHHH-
Confidence 567888888776 4453 3 58888889999999998888888 443321 11233333 333322111
Q ss_pred ccccccHHHHHHH--------------HHHhhhcCCC---CCC-CCCchhHHHHHHHHhhccCccc-hHhHHHHHHhhhc
Q 023201 151 NTGLERSEKLAKD--------------LEWFKEQGYT---IPE-PSSPGISYVQYLEELSEKDPQA-FICHFYNIYFAHS 211 (286)
Q Consensus 151 ~p~L~Rt~aL~~D--------------L~~l~g~~w~---~~~-p~pa~~~Yv~~I~~la~~~P~~-LlAh~YvrYlGdl 211 (286)
-+..-++.| +..=+|.+-+ ... .+|.|+..|+--...+...|.. -+|-.||--..=-
T Consensus 72 ----wl~ri~DhdG~~~~~ggie~WlrfaealGl~re~v~s~~~~lP~trfaVday~~f~r~~~~~eavasslTE~f~P~ 147 (239)
T TIGR02111 72 ----WRQRILDHDGDHEEDGGIERWLRLAEAVGLDREYVLSTRGVLPGTRFAVDAYVHFVREKSLLEAIASSLTELFAPQ 147 (239)
T ss_pred ----HHHHHHHhcCCCCCCCcHHHHHHHHHHhCCCHHHHhcccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhHH
Confidence 111222222 1111232211 223 3788877777777777656654 7788887322211
Q ss_pred hhhHHHHHHHHHHh--cCCCCcccccccC--ChhHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 023201 212 AGGRMIGKKVAEKI--LGGKELEFYKWDG--ELPKLLQNVRDKLNKVAESWTREEKNRCLEETELSFKHSGEILR 282 (286)
Q Consensus 212 sGGQiI~~~la~~~--L~~~gl~FY~F~g--d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~EA~~aF~ln~~i~~ 282 (286)
--.+.| .-+.+.| .+.+|+.||+--- ...+.-..+.-.|+.+ -|+++++++++.+...=+.--.+++
T Consensus 148 I~~~ri-~gl~~~Y~~~~~e~l~yF~~r~~qa~rd~e~~l~~~l~~~---~t~e~Q~~~l~al~fk~dvLw~~LD 218 (239)
T TIGR02111 148 IHSERV-AGMLQHYDFIDDAALAYFRKRLTQAPRDVEFGLDYVLDHA---TTREKQEAALEALTFKCDVLWAQLD 218 (239)
T ss_pred HHHHHH-HhHHHHCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222 2344555 3567888876421 2333334445557777 5888999988877655444333333
No 15
>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function. The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.
Probab=60.09 E-value=72 Score=29.45 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=68.1
Q ss_pred HHHHHHHhhhcCCCCCCCCCchhHHHHHHHHhhccCccchHhHHHHHHhhhchhhHHHHHHHHHHh-------cCCCCcc
Q 023201 160 LAKDLEWFKEQGYTIPEPSSPGISYVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKI-------LGGKELE 232 (286)
Q Consensus 160 L~~DL~~l~g~~w~~~~p~pa~~~Yv~~I~~la~~~P~~LlAh~YvrYlGdlsGGQiI~~~la~~~-------L~~~gl~ 232 (286)
+++=+....|.+-+...|++++..+...+..+...++...+|-+|..--....-=+.| ..+..++ .+..-+.
T Consensus 96 ~~~~l~~~~~~~v~~~~Ps~aT~~fl~sv~~L~t~~~s~vlGa~YAtE~~AIpEl~ll-~ei~~~la~rk~~~~~~s~l~ 174 (231)
T PF12981_consen 96 FRKALHTYFGFDVNNRMPSVATTHFLDSVLALFTWDSSEVLGACYATEAAAIPELQLL-YEIVNELAQRKGLHNSWSQLD 174 (231)
T ss_dssp HHHHHHHHHS---TT----HHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH-HHHHTTT---HHHHH------
T ss_pred HHHHHHHHhCCcccccCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccCCCcchhhhH
Confidence 3344444335443456899999999999999999899999999998744444444444 3333322 1233457
Q ss_pred cccc--cCChhHHHHHHHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 023201 233 FYKW--DGELPKLLQNVRDKLNKVAESWTREE-KNRCLEETELSFKHSGEILRLI 284 (286)
Q Consensus 233 FY~F--~gd~~~~k~~yr~~Ld~l~~~l~~ee-k~~iI~EA~~aF~ln~~i~~ei 284 (286)
||+. ||-..+-+++.+..++.. .+.++ ...|++....+-..+..|-.++
T Consensus 175 F~d~HlDg~E~~H~d~L~~~l~~~---i~~e~q~~~f~~Gf~~mI~~m~~wW~~L 226 (231)
T PF12981_consen 175 FYDWHLDGTEQEHKDGLRQFLASY---IDTEEQMPLFKDGFLAMIDIMEDWWKEL 226 (231)
T ss_dssp HHHHHCS----HHHHHHHHHHHTT-----GGG-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHH---cCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7764 354456788889999987 55554 6677777777766666665554
No 16
>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]
Probab=39.41 E-value=60 Score=29.98 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCC----------ccccccccccccHHHHHHHHHHhhhcCCC------CCCCCCc
Q 023201 118 DGYLRFLVDSKLVYDTLEGIIEK-APFP----------SYAEFRNTGLERSEKLAKDLEWFKEQGYT------IPEPSSP 180 (286)
Q Consensus 118 ~~Y~~lL~~ly~VY~aLE~al~~-~~~p----------~l~~f~~p~L~Rt~aL~~DL~~l~g~~w~------~~~p~pa 180 (286)
..|+....+.|.+.+..+ -+.. ...+ ...-|+...|+++-..-+|..-+.+.-.. ..+ -+.
T Consensus 5 ~~lR~gt~~ah~~aEnv~-fmkcfLkg~V~~e~f~kl~~n~yf~ysaleaa~~~~~d~~~l~~i~fp~lnr~~tle-~dl 82 (238)
T COG5398 5 FKLRQGTQKAHTVAENVG-FMKCFLKGVVERESFRKLLANLYFVYSALEAATQIHKDNPILSSIYFPELNRKATLE-KDL 82 (238)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhccchhhhhHHHhh-cCH
Confidence 468888999999998888 4444 2222 12234456788888888887777653221 111 122
Q ss_pred hhHHHHHHHHhhccCccchHhHHHHHHhhhchhhHHHHHHHHHHh
Q 023201 181 GISYVQYLEELSEKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKI 225 (286)
Q Consensus 181 ~~~Yv~~I~~la~~~P~~LlAh~YvrYlGdlsGGQiI~~~la~~~ 225 (286)
.--|-.-+++.....|...+-++.++|++.+.||..|+....|.+
T Consensus 83 ~~yyg~nwre~I~~sp~t~~yv~rv~~iaa~ap~lLIah~ytRyL 127 (238)
T COG5398 83 LYYYGNNWRENIQPSPATIAYVDRVRYIAATAPELLIAHNYTRYL 127 (238)
T ss_pred HHHhcccHHHhcCcChhHHHHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 333446778888889999999999999999999999988887766
No 17
>PF14246 TetR_C_7: AefR-like transcriptional repressor, C-terminal region; PDB: 3BHQ_B 3CDL_A.
Probab=29.54 E-value=67 Score=21.86 Aligned_cols=25 Identities=28% Similarity=0.179 Sum_probs=16.6
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHHH
Q 023201 251 LNKVAESWTREEKNRCLEETELSFK 275 (286)
Q Consensus 251 Ld~l~~~l~~eek~~iI~EA~~aF~ 275 (286)
+-......+++|.+++|+++...|-
T Consensus 28 llg~~~~~s~~e~~~~v~~aV~~FL 52 (55)
T PF14246_consen 28 LLGLAPPPSAEEIERIVESAVDMFL 52 (55)
T ss_dssp HHHTS----HHHHHHHHHHHHHHHH
T ss_pred HhCCCCCcCHHHHHHHHHHHHHHHH
Confidence 3334346789999999999999984
No 18
>TIGR02792 PCA_ligA protocatechuate 4,5-dioxygenase, alpha subunit. Protocatechuate (PCA) 4,5-dioxygenase is the first enzyme in the PCA 4,5-cleavage pathway that is an alternative to PCA 3,4-cleavage and PCA 2,3 cleavage pathways. PCA is an intermediate in the breakdown of lignin (hence the gene symbol ligA) and other compounds. Members of this family are the alpha chain of PCA 4,5-dioxygenase, or the equivalent domain of a fusion protein.
Probab=29.19 E-value=59 Score=27.09 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=23.3
Q ss_pred ChhHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 023201 239 ELPKLLQNVRDKLNKVAESWTREEKNRCLE 268 (286)
Q Consensus 239 d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~ 268 (286)
....|+.+-++.+|+. +||+|||+.|++
T Consensus 33 nRerF~ade~Ay~d~~--~Lt~eqk~av~~ 60 (117)
T TIGR02792 33 NRERFKADESAYLDEW--NLTPAQKQAVLA 60 (117)
T ss_pred HHHHHHhCHHHHHHHc--CCCHHHHHHHHh
Confidence 4567888888899999 599999998765
No 19
>cd07924 PCA_45_Doxase_A The A subunit of Protocatechuate 4,5-dioxygenase (LigAB) is the smaller, non-catalytic subunit. The A subunit is the non-catalytic subunit of Protocatechuate (PCA) 4,5-dioxygenase (LigAB), which is composed of A and B subunits that form a tetramer. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As a member of the Class III extradiol dioxygenase family, LigAB uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=27.43 E-value=69 Score=26.87 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=23.1
Q ss_pred ChhHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 023201 239 ELPKLLQNVRDKLNKVAESWTREEKNRCLE 268 (286)
Q Consensus 239 d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~ 268 (286)
....|+.+-++.+++. +||+|||+.|++
T Consensus 36 nRerF~ade~Ay~~~~--~Lteeqr~aV~~ 63 (121)
T cd07924 36 NRERFKADERAYLDKW--PMTEEQKQAVLA 63 (121)
T ss_pred HHHHHHhCHHHHHHHc--CCCHHHHHHHHH
Confidence 4467788888889999 599999998865
No 20
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=26.84 E-value=87 Score=28.67 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 023201 244 LQNVRDKLNKVAESWTREEKNRCLEETELS 273 (286)
Q Consensus 244 k~~yr~~Ld~l~~~l~~eek~~iI~EA~~a 273 (286)
|+.....|..+ +|.|||++|..||...
T Consensus 42 WdDcqqLL~~L---fT~EEr~rI~~~Ark~ 68 (211)
T PF02093_consen 42 WDDCQQLLQTL---FTTEERERILQEARKY 68 (211)
T ss_dssp HHHHHHHHHHH---S-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH---cCHHHHHHHHHHHHHH
Confidence 77778889998 9999999999999874
No 21
>PRK13377 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=25.79 E-value=74 Score=26.97 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.1
Q ss_pred ChhHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 023201 239 ELPKLLQNVRDKLNKVAESWTREEKNRCLE 268 (286)
Q Consensus 239 d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~ 268 (286)
....|+.+-++.+++. +||+|||+.|++
T Consensus 39 nRerF~ade~Ay~de~--~Lteeqr~aV~~ 66 (129)
T PRK13377 39 NRERFKADERAYLDEW--PMTEEQKQAVLA 66 (129)
T ss_pred HHHHHHhCHHHHHHHc--CCCHHHHHHHHh
Confidence 4467788888889999 599999998765
No 22
>PRK13379 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=25.69 E-value=77 Score=26.50 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=22.7
Q ss_pred ChhHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 023201 239 ELPKLLQNVRDKLNKVAESWTREEKNRCLE 268 (286)
Q Consensus 239 d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~ 268 (286)
...+|+.+-++.+++. +||+|||+.|.+
T Consensus 40 ~RerF~aDe~ay~~~~--~Lt~eqk~aV~~ 67 (119)
T PRK13379 40 WRDRFLQDAEALMQEA--GLTEQEKELIRA 67 (119)
T ss_pred HHHHHHhCHHHHHHHc--CCCHHHHHHHHh
Confidence 4467777788889999 599999988765
No 23
>PRK13378 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=25.58 E-value=77 Score=26.42 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=23.1
Q ss_pred ChhHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 023201 239 ELPKLLQNVRDKLNKVAESWTREEKNRCLE 268 (286)
Q Consensus 239 d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~ 268 (286)
....|+.+-++.+++. +||+|||+.|.+
T Consensus 39 nRe~F~ade~Ay~~~~--~Lteeqk~aV~~ 66 (117)
T PRK13378 39 NRAAFLADEAAYCRKY--GLNEEQKEAIRN 66 (117)
T ss_pred HHHHHHhCHHHHHHHc--CCCHHHHHHHHh
Confidence 4567788888889999 599999998765
No 24
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=25.28 E-value=78 Score=25.93 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=22.7
Q ss_pred ChhHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 023201 239 ELPKLLQNVRDKLNKVAESWTREEKNRCLE 268 (286)
Q Consensus 239 d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~ 268 (286)
...+|+.+-++.+++. +||+|||+.|.+
T Consensus 28 ~Re~F~aD~eAy~~~~--gLTeEe~~AV~~ 55 (106)
T cd07921 28 NREAFKADEEAYCDKF--GLTEEQKQAVLD 55 (106)
T ss_pred HHHHHHhCHHHHHHHc--CCCHHHHHHHHh
Confidence 4467777778889999 599999998864
No 25
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=24.91 E-value=1.3e+02 Score=23.26 Aligned_cols=37 Identities=11% Similarity=0.317 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023201 244 LQNVRDKLNKVAESWTREEKNRCLEETELSFKHSGEILRLI 284 (286)
Q Consensus 244 k~~yr~~Ld~l~~~l~~eek~~iI~EA~~aF~ln~~i~~ei 284 (286)
.++++..|+.+ ||++||+.++.- ...|.-+..+...+
T Consensus 5 Vr~lh~~l~~l---Ls~~Er~~f~h~-Ln~Y~~~RnV~~Lv 41 (78)
T cd07356 5 VRRLHNALTKL---LSEAEREEFIHC-LNDYHAKRNVYDLV 41 (78)
T ss_pred HHHHHHHHHHH---ccHHHHHHHHHH-HHHHHhcccHHHHH
Confidence 35678899998 999999998864 55666666555443
No 26
>cd07925 LigA_like_1 The A subunit of Uncharacterized proteins with similarity to Protocatechuate 4,5-dioxygenase (LigAB). The proteins of unknown function in this subfamily are similar to the A subunit of the Protocatechuate (PCA) 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds.
Probab=23.73 E-value=90 Score=25.61 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=23.0
Q ss_pred ChhHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 023201 239 ELPKLLQNVRDKLNKVAESWTREEKNRCLE 268 (286)
Q Consensus 239 d~~~~k~~yr~~Ld~l~~~l~~eek~~iI~ 268 (286)
....|+.+-++.+++. +||+|||+.|.+
T Consensus 28 nRe~F~aD~~Ay~~~~--~Lteeqr~av~~ 55 (106)
T cd07925 28 NREAFLADEEAYCEKF--GLTPEQKQAVRN 55 (106)
T ss_pred HHHHHHhCHHHHHHHc--CCCHHHHHHHHH
Confidence 4567777888889999 599999988765
No 27
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=21.57 E-value=97 Score=23.56 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 023201 241 PKLLQNVRDKLNKVAESWTREEKNRCLE 268 (286)
Q Consensus 241 ~~~k~~yr~~Ld~l~~~l~~eek~~iI~ 268 (286)
.+|+.+=+..+++. +||++|++.|.+
T Consensus 20 e~f~~dp~a~~~~~--~Lt~eE~~al~~ 45 (77)
T cd07321 20 ERFKADPEAVLAEY--GLTPEEKAALLA 45 (77)
T ss_pred HHHHhCHHHHHHHc--CCCHHHHHHHHc
Confidence 45666666779998 599999998865
No 28
>cd07923 Gallate_dioxygenase_C The C-terminal domain of Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of the PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. This model represents the C-terminal domain, which is similar to the A subunit of PCA 4,5-dioxygenase (or LigAB). The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. Since enzymes in this subfamily have fused A and B subunits, the dimer interface may resemble the tetramer interface of classical LigAB enzymes. This enzyme belongs to the class III extradiol dioxygenase family, composed of enzymes whi
Probab=21.37 E-value=95 Score=24.91 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 023201 240 LPKLLQNVRDKLNKVAESWTREEKNRCLE 268 (286)
Q Consensus 240 ~~~~k~~yr~~Ld~l~~~l~~eek~~iI~ 268 (286)
...|+.+-+..+++. +||+||++.|.+
T Consensus 21 RerF~~D~ea~~~e~--gLt~Ee~~av~~ 47 (94)
T cd07923 21 RERFLEDPEALFDEA--GLTEEERTLIRN 47 (94)
T ss_pred HHHHHhCHHHHHHHc--CCCHHHHHHHHc
Confidence 356666667789999 599999987754
No 29
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=20.84 E-value=53 Score=20.34 Aligned_cols=19 Identities=42% Similarity=0.394 Sum_probs=12.0
Q ss_pred CCccccccchhh--hccCCcc
Q 023201 1 MASLTSISQSQS--FLMKPHL 19 (286)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~ 19 (286)
|||.||-|+.-+ +-.+||-
T Consensus 1 masstpaspapsdils~~pqs 21 (29)
T PF05570_consen 1 MASSTPASPAPSDILSSKPQS 21 (29)
T ss_pred CCcCCCCCCCcHHHHhcCccc
Confidence 899999885443 2245553
No 30
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=20.59 E-value=1.2e+02 Score=26.81 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.0
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHH
Q 023201 245 QNVRDKLNKVAESWTREEKNRCLEETEL 272 (286)
Q Consensus 245 ~~yr~~Ld~l~~~l~~eek~~iI~EA~~ 272 (286)
++++.....+++++|+++-.+.|+||-.
T Consensus 126 ~~lkrvakeLgenltD~El~eMIeEAd~ 153 (172)
T KOG0028|consen 126 RNLKRVAKELGENLTDEELMEMIEEADR 153 (172)
T ss_pred HHHHHHHHHhCccccHHHHHHHHHHhcc
Confidence 4667888999999999999999999853
Done!