BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023202
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SY2|A Chain A, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|B Chain B, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 621
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 107 NAQGVATTN---GEVPSPDDPSASKVFQLDGPEWVE-----LFVREMMSSSNIDDARA-R 157
N Q +A TN V DD S S++ + P E + ++S+ ++ DA +
Sbjct: 461 NQQFLAATNQKHSTVKLIDDASVSRLATIFDPLLPEGKLSPAHYQHILSAYHLTDATPQK 520
Query: 158 ASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYE 217
+ L L + +S+ + H L+ EAL+Q+ L A+ E+ E+
Sbjct: 521 QAETLFCLSTAFARYSSSAIFGTEHDSPPALRGYAEALMQKAWELSPAIFPSSEQFTEWS 580
Query: 218 DRSQELH 224
DR LH
Sbjct: 581 DRFHGLH 587
>pdb|2QYU|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 627
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 107 NAQGVATTN---GEVPSPDDPSASKVFQLDGPEWVE-----LFVREMMSSSNIDDARA-R 157
N Q +A TN V DD S S++ + P E + ++S+ ++ DA +
Sbjct: 467 NQQFLAATNQKHSTVKLIDDASVSRLATIFDPLLPEGKLSPAHYQHILSAYHLTDATPQK 526
Query: 158 ASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYE 217
+ L L + +S+ + H L+ EAL+Q+ L A+ E+ E+
Sbjct: 527 QAETLFCLSTAFARYSSSAIFGTEHDSPPALRGYAEALMQKAWELSPAIFPSSEQFTEWS 586
Query: 218 DRSQELH 224
DR LH
Sbjct: 587 DRFHGLH 593
>pdb|2NSF|A Chain A, Crystal Structure Of The Mycothiol-Dependent
Maleylpyruvate Isomerase
Length = 261
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 94 GSVAGKSDLAADANAQGVATTNGEVPSP 121
GS+AG AA + GV ++ GEVP P
Sbjct: 230 GSLAGIVRYAAGRGSDGVTSSTGEVPEP 257
>pdb|2NSG|A Chain A, Crystal Structure Of The Mycothiol-Dependent
Maleylpyruvate Isomerase H52a Mutant
Length = 261
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 94 GSVAGKSDLAADANAQGVATTNGEVPSP 121
GS+AG AA + GV ++ GEVP P
Sbjct: 230 GSLAGIVRYAAGRGSDGVTSSTGEVPEP 257
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 74 LDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDD 123
+D + S + G D G V ++D+ A +QG+ G + SP D
Sbjct: 136 VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHD 185
>pdb|2QZA|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
pdb|2QZA|B Chain B, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 618
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 107 NAQGVATTN---GEVPSPDDPSASKVFQLDGPEWVE-----LFVREMMSSSNIDDARA-R 157
N Q +A TN V DD S S++ + P E + ++S+ ++ DA +
Sbjct: 458 NQQFLAATNQKHSTVKLIDDASVSRLATIFDPLLPEGKLSPAHYQHILSAYHLTDATPQK 517
Query: 158 ASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYE 217
+ L L + +S+ + H L+ EAL Q+ L A+ E+ E+
Sbjct: 518 QAETLFCLSTAFARYSSSAIFGTEHDSPPALRGYAEALXQKAWELSPAIFPSSEQFTEWS 577
Query: 218 DRSQELH 224
DR LH
Sbjct: 578 DRFHGLH 584
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 74 LDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDD 123
+D + S + G D G + GK+DL G+ G V SP D
Sbjct: 200 VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHD 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,149,808
Number of Sequences: 62578
Number of extensions: 240223
Number of successful extensions: 817
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 23
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)