Query 023202
Match_columns 286
No_of_seqs 66 out of 68
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 09:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14817 HAUS5: HAUS augmin-li 98.9 1.9E-08 4E-13 102.9 13.9 122 133-272 308-430 (632)
2 PF02845 CUE: CUE domain; Int 98.3 1.8E-06 3.9E-11 59.1 5.1 40 45-84 2-41 (42)
3 smart00546 CUE Domain that may 98.2 2.5E-06 5.3E-11 58.5 5.0 38 46-83 4-41 (43)
4 PF03474 DMA: DMRTA motif; In 97.4 0.00039 8.5E-09 48.9 4.8 35 47-81 4-38 (39)
5 COG3074 Uncharacterized protei 95.8 0.15 3.3E-06 40.5 10.2 69 161-241 5-73 (79)
6 PF00627 UBA: UBA/TS-N domain; 95.8 0.023 5E-07 37.8 4.6 35 45-81 3-37 (37)
7 PF15619 Lebercilin: Ciliary p 95.6 0.27 5.9E-06 44.2 12.2 68 178-248 14-81 (194)
8 PRK15422 septal ring assembly 94.6 0.58 1.3E-05 37.6 10.1 69 160-240 4-72 (79)
9 PF06005 DUF904: Protein of un 93.7 1.1 2.4E-05 34.9 9.8 62 160-240 4-65 (72)
10 PF09744 Jnk-SapK_ap_N: JNK_SA 93.3 1.8 4E-05 38.1 11.6 76 159-241 32-109 (158)
11 smart00165 UBA Ubiquitin assoc 92.2 0.37 8E-06 31.4 4.5 34 46-81 3-36 (37)
12 cd00194 UBA Ubiquitin Associat 91.9 0.42 9.2E-06 31.3 4.6 35 46-82 3-37 (38)
13 PF15058 Speriolin_N: Sperioli 90.9 0.35 7.6E-06 44.4 4.5 26 179-205 15-40 (200)
14 PF02403 Seryl_tRNA_N: Seryl-t 90.1 6.1 0.00013 31.3 10.4 83 162-244 11-97 (108)
15 PRK09413 IS2 repressor TnpA; R 90.0 0.6 1.3E-05 38.2 4.8 34 179-212 74-107 (121)
16 PRK10884 SH3 domain-containing 88.8 7.9 0.00017 35.3 11.4 60 181-242 98-160 (206)
17 PF13851 GAS: Growth-arrest sp 88.4 15 0.00033 33.1 12.9 88 180-269 66-153 (201)
18 PF10226 DUF2216: Uncharacteri 87.3 4.6 0.0001 37.2 9.0 57 184-241 56-121 (195)
19 PF10205 KLRAQ: Predicted coil 86.7 5.9 0.00013 33.1 8.6 15 193-207 8-22 (102)
20 KOG0971 Microtubule-associated 84.6 35 0.00075 38.4 15.2 67 175-241 324-430 (1243)
21 PRK11637 AmiB activator; Provi 84.4 40 0.00086 32.9 14.4 64 145-214 145-208 (428)
22 PHA02047 phage lambda Rz1-like 83.0 7.8 0.00017 32.5 7.6 36 203-241 26-61 (101)
23 PF14555 UBA_4: UBA-like domai 82.9 2.5 5.4E-05 29.0 4.1 36 47-83 3-38 (43)
24 PLN02678 seryl-tRNA synthetase 82.7 20 0.00044 36.3 11.9 64 178-241 35-98 (448)
25 KOG1853 LIS1-interacting prote 81.9 12 0.00027 36.4 9.6 23 219-241 96-118 (333)
26 KOG4005 Transcription factor X 81.6 14 0.00031 35.5 9.8 65 170-235 76-152 (292)
27 PF11932 DUF3450: Protein of u 81.6 41 0.0009 30.6 13.0 51 175-225 48-98 (251)
28 PF15058 Speriolin_N: Sperioli 81.4 3.6 7.9E-05 38.0 5.7 37 185-232 7-43 (200)
29 PRK05431 seryl-tRNA synthetase 81.2 25 0.00054 34.9 11.8 68 177-244 29-96 (425)
30 PF07058 Myosin_HC-like: Myosi 81.2 14 0.0003 36.7 9.8 66 179-249 3-87 (351)
31 PRK13182 racA polar chromosome 81.2 26 0.00056 31.3 10.8 102 130-235 38-146 (175)
32 TIGR03752 conj_TIGR03752 integ 81.0 11 0.00024 38.8 9.4 61 179-241 76-136 (472)
33 PF04111 APG6: Autophagy prote 79.6 58 0.0013 31.3 13.3 22 220-241 112-133 (314)
34 KOG4588 Predicted ubiquitin-co 79.6 4.4 9.6E-05 38.7 5.7 32 54-85 1-32 (267)
35 PF10473 CENP-F_leu_zip: Leuci 79.0 27 0.00059 30.4 10.0 66 179-271 48-113 (140)
36 PF06156 DUF972: Protein of un 78.7 8 0.00017 32.1 6.4 27 178-204 17-43 (107)
37 TIGR00414 serS seryl-tRNA synt 78.6 33 0.00072 34.0 11.7 62 179-241 33-96 (418)
38 PF05010 TACC: Transforming ac 77.8 58 0.0013 30.0 13.4 83 159-241 43-131 (207)
39 COG4797 Predicted regulatory d 77.4 1.8 4E-05 41.4 2.6 25 51-75 4-29 (268)
40 TIGR03752 conj_TIGR03752 integ 77.4 26 0.00057 36.1 10.8 56 181-239 85-141 (472)
41 TIGR03495 phage_LysB phage lys 76.9 36 0.00078 29.6 10.1 60 181-241 28-88 (135)
42 PRK13169 DNA replication intia 76.4 9.5 0.00021 32.0 6.3 28 177-204 16-43 (110)
43 PF10234 Cluap1: Clusterin-ass 76.2 29 0.00062 33.3 10.1 101 129-241 128-231 (267)
44 PRK02224 chromosome segregatio 75.4 99 0.0021 32.6 14.7 62 179-240 209-270 (880)
45 PRK09039 hypothetical protein; 75.3 83 0.0018 30.5 13.2 66 151-217 111-178 (343)
46 PF13747 DUF4164: Domain of un 75.0 42 0.0009 26.9 12.0 83 148-239 3-85 (89)
47 KOG4603 TBP-1 interacting prot 74.8 17 0.00036 33.6 7.8 58 177-242 80-144 (201)
48 PF15035 Rootletin: Ciliary ro 74.7 24 0.00051 31.7 8.7 64 181-261 79-142 (182)
49 KOG4797 Transcriptional regula 73.9 8.6 0.00019 33.1 5.4 41 167-207 58-98 (123)
50 KOG0241 Kinesin-like protein [ 73.7 18 0.00039 41.0 9.0 79 175-283 363-442 (1714)
51 PF09744 Jnk-SapK_ap_N: JNK_SA 73.6 38 0.00082 29.9 9.6 63 179-241 85-148 (158)
52 PRK03918 chromosome segregatio 73.0 1.3E+02 0.0028 31.6 15.6 31 141-171 150-180 (880)
53 PF10828 DUF2570: Protein of u 72.3 49 0.0011 27.0 9.4 61 178-241 27-87 (110)
54 KOG0804 Cytoplasmic Zn-finger 70.7 53 0.0012 34.1 11.1 57 184-246 390-446 (493)
55 PF02954 HTH_8: Bacterial regu 70.6 3.7 8E-05 28.0 2.1 25 58-82 5-29 (42)
56 KOG0995 Centromere-associated 70.4 25 0.00054 37.1 8.9 61 181-241 299-359 (581)
57 PF07106 TBPIP: Tat binding pr 70.1 31 0.00067 29.5 8.1 64 177-241 73-136 (169)
58 COG3206 GumC Uncharacterized p 69.7 88 0.0019 30.8 12.1 80 161-241 321-400 (458)
59 PF10506 MCC-bdg_PDZ: PDZ doma 69.3 43 0.00093 26.0 7.9 54 187-241 2-59 (67)
60 PF15070 GOLGA2L5: Putative go 69.3 1E+02 0.0022 32.6 13.1 45 179-223 90-134 (617)
61 COG2433 Uncharacterized conser 69.2 1.2E+02 0.0026 32.7 13.5 77 180-256 433-516 (652)
62 PLN02320 seryl-tRNA synthetase 68.9 62 0.0014 33.5 11.3 63 178-241 95-157 (502)
63 PF11559 ADIP: Afadin- and alp 68.4 70 0.0015 26.8 14.0 89 151-241 43-139 (151)
64 CHL00098 tsf elongation factor 68.1 9.1 0.0002 34.9 4.7 41 47-88 4-44 (200)
65 PRK13922 rod shape-determining 67.5 95 0.0021 28.4 11.2 18 213-230 92-109 (276)
66 PF04111 APG6: Autophagy prote 67.4 1.2E+02 0.0026 29.1 12.6 27 181-207 55-81 (314)
67 PF15372 DUF4600: Domain of un 66.8 22 0.00047 30.9 6.5 65 179-267 18-82 (129)
68 PF07888 CALCOCO1: Calcium bin 66.4 1.8E+02 0.0039 30.8 14.0 40 178-217 187-226 (546)
69 PHA02562 46 endonuclease subun 66.3 1.4E+02 0.003 29.5 13.3 64 180-243 178-242 (562)
70 PF01166 TSC22: TSC-22/dip/bun 64.9 9 0.0002 29.4 3.4 30 176-205 14-43 (59)
71 KOG3647 Predicted coiled-coil 64.8 1.4E+02 0.0031 29.5 12.1 105 128-241 70-174 (338)
72 PF12325 TMF_TATA_bd: TATA ele 64.7 87 0.0019 26.6 11.1 72 181-252 42-113 (120)
73 PRK12332 tsf elongation factor 63.6 12 0.00027 33.9 4.6 43 46-89 6-48 (198)
74 KOG0976 Rho/Rac1-interacting s 62.7 1.4E+02 0.003 33.7 12.7 82 160-241 298-399 (1265)
75 PF03962 Mnd1: Mnd1 family; I 62.7 1.2E+02 0.0025 27.2 11.7 12 259-270 156-167 (188)
76 TIGR00219 mreC rod shape-deter 62.5 21 0.00046 33.6 6.2 18 178-195 68-85 (283)
77 PF06005 DUF904: Protein of un 61.6 55 0.0012 25.5 7.3 26 178-203 27-52 (72)
78 PF02341 RcbX: RbcX protein; 60.7 39 0.00084 28.7 6.7 30 129-167 48-77 (111)
79 PF07888 CALCOCO1: Calcium bin 60.6 1.5E+02 0.0032 31.4 12.2 64 178-241 152-226 (546)
80 PF08614 ATG16: Autophagy prot 60.3 50 0.0011 29.1 7.7 71 159-241 101-171 (194)
81 PRK06369 nac nascent polypepti 60.2 12 0.00026 31.8 3.7 35 48-83 80-114 (115)
82 PF13851 GAS: Growth-arrest sp 60.2 1.3E+02 0.0029 27.1 14.8 57 178-241 50-106 (201)
83 PLN03025 replication factor C 60.2 50 0.0011 30.7 8.0 56 26-86 147-206 (319)
84 PF09787 Golgin_A5: Golgin sub 59.8 1.7E+02 0.0036 29.8 12.2 118 150-270 236-368 (511)
85 PF11544 Spc42p: Spindle pole 59.7 28 0.0006 28.0 5.4 36 194-239 2-37 (76)
86 PF09311 Rab5-bind: Rabaptin-l 59.5 9.1 0.0002 33.7 3.0 67 177-243 16-86 (181)
87 PF10211 Ax_dynein_light: Axon 59.2 1.3E+02 0.0029 26.8 14.4 67 185-270 122-188 (189)
88 PF05769 DUF837: Protein of un 58.9 1E+02 0.0022 27.7 9.4 64 181-245 29-101 (181)
89 TIGR02894 DNA_bind_RsfA transc 58.7 47 0.001 29.9 7.3 39 159-203 86-124 (161)
90 PF05010 TACC: Transforming ac 58.4 1.5E+02 0.0033 27.3 13.2 84 180-273 94-189 (207)
91 PF08317 Spc7: Spc7 kinetochor 58.2 1.7E+02 0.0038 27.8 13.1 59 180-241 206-264 (325)
92 TIGR00116 tsf translation elon 57.9 8.9 0.00019 36.8 2.8 43 46-89 6-48 (290)
93 KOG0161 Myosin class II heavy 57.7 3.7E+02 0.0079 32.7 15.8 70 179-248 1473-1546(1930)
94 TIGR00264 alpha-NAC-related pr 57.5 14 0.0003 31.6 3.6 26 57-82 90-115 (116)
95 PRK13922 rod shape-determining 57.4 1.2E+02 0.0026 27.8 9.9 24 179-202 72-95 (276)
96 PRK09377 tsf elongation factor 56.6 9.6 0.00021 36.6 2.8 42 46-88 7-48 (290)
97 KOG3119 Basic region leucine z 56.5 38 0.00081 31.9 6.6 26 181-206 227-252 (269)
98 KOG2264 Exostosin EXT1L [Signa 56.4 72 0.0016 34.6 9.2 70 140-241 79-148 (907)
99 TIGR00219 mreC rod shape-deter 56.2 36 0.00077 32.1 6.5 38 193-230 69-107 (283)
100 TIGR03185 DNA_S_dndD DNA sulfu 56.2 2.5E+02 0.0055 29.1 14.4 67 179-245 212-286 (650)
101 TIGR01834 PHA_synth_III_E poly 55.7 2.2E+02 0.0047 28.2 13.6 83 149-241 225-316 (320)
102 COG2433 Uncharacterized conser 55.5 2.3E+02 0.005 30.6 12.7 113 138-253 364-499 (652)
103 PF07334 IFP_35_N: Interferon- 55.3 23 0.00051 28.3 4.3 30 179-208 3-32 (76)
104 PF10186 Atg14: UV radiation r 54.9 1.6E+02 0.0034 26.3 13.4 25 182-206 83-107 (302)
105 PF11981 DUF3482: Domain of un 54.7 1.3E+02 0.0028 28.9 10.0 50 227-286 87-136 (292)
106 TIGR03319 YmdA_YtgF conserved 54.5 2.6E+02 0.0057 28.8 14.8 13 151-163 27-39 (514)
107 PF13118 DUF3972: Protein of u 54.4 74 0.0016 27.6 7.5 19 189-207 84-102 (126)
108 PF07989 Microtub_assoc: Micro 54.3 1E+02 0.0022 24.1 8.1 21 221-241 50-70 (75)
109 PRK11637 AmiB activator; Provi 54.0 2.2E+02 0.0049 27.8 12.9 29 216-244 98-126 (428)
110 PF07851 TMPIT: TMPIT-like pro 53.9 1.6E+02 0.0035 29.2 10.7 42 177-218 12-53 (330)
111 KOG4466 Component of histone d 53.7 1.2E+02 0.0026 29.7 9.6 39 228-273 116-154 (291)
112 smart00787 Spc7 Spc7 kinetocho 53.1 2.2E+02 0.0048 27.6 13.2 87 182-275 203-289 (312)
113 TIGR01069 mutS2 MutS2 family p 52.8 3.1E+02 0.0066 29.7 13.3 62 185-246 527-590 (771)
114 KOG0612 Rho-associated, coiled 52.7 1.9E+02 0.0041 33.6 12.1 61 181-241 463-528 (1317)
115 KOG3096 Spliceosome-associated 52.6 1.5E+02 0.0032 28.1 9.7 101 131-268 91-193 (225)
116 PF03961 DUF342: Protein of un 52.1 1.4E+02 0.003 29.6 10.1 24 219-242 380-403 (451)
117 PF06364 DUF1068: Protein of u 51.8 84 0.0018 28.8 7.8 45 188-237 82-126 (176)
118 COG4026 Uncharacterized protei 51.3 2.4E+02 0.0052 27.4 11.7 151 72-241 17-190 (290)
119 PLN02939 transferase, transfer 51.2 1.9E+02 0.0041 32.7 11.7 54 188-241 224-277 (977)
120 smart00804 TAP_C C-terminal do 51.2 27 0.00059 26.5 3.9 33 54-86 21-53 (63)
121 PF10211 Ax_dynein_light: Axon 51.0 1.4E+02 0.0031 26.6 9.1 60 180-239 124-188 (189)
122 PF07200 Mod_r: Modifier of ru 50.6 1.5E+02 0.0032 24.7 10.4 19 223-241 68-86 (150)
123 PF09006 Surfac_D-trimer: Lung 50.0 35 0.00076 25.1 4.2 22 187-208 3-24 (46)
124 PF05911 DUF869: Plant protein 49.9 3.3E+02 0.0071 29.9 13.1 92 159-255 112-210 (769)
125 PF14362 DUF4407: Domain of un 49.6 1.6E+02 0.0035 27.2 9.6 14 162-175 103-116 (301)
126 KOG4343 bZIP transcription fac 49.4 29 0.00062 36.9 5.0 83 160-243 278-361 (655)
127 PF13097 CENP-U: CENP-A nucleo 49.4 1.1E+02 0.0024 28.0 8.1 50 149-205 101-157 (175)
128 PF08614 ATG16: Autophagy prot 48.9 1.9E+02 0.0041 25.5 9.9 39 183-221 137-175 (194)
129 PF09789 DUF2353: Uncharacteri 48.7 96 0.0021 30.5 8.2 32 178-209 81-112 (319)
130 PF11559 ADIP: Afadin- and alp 48.2 1.6E+02 0.0036 24.6 12.1 62 177-241 60-121 (151)
131 TIGR02449 conserved hypothetic 47.6 1.3E+02 0.0029 23.3 8.8 24 180-203 18-41 (65)
132 PF01486 K-box: K-box region; 47.6 77 0.0017 25.0 6.2 45 162-206 51-98 (100)
133 PF05557 MAD: Mitotic checkpoi 47.6 2.9E+02 0.0062 29.2 12.0 31 176-206 503-533 (722)
134 TIGR01837 PHA_granule_1 poly(h 47.4 69 0.0015 26.6 6.2 32 133-166 23-54 (118)
135 PRK09039 hypothetical protein; 47.2 2.8E+02 0.0061 27.0 12.4 33 184-216 138-170 (343)
136 smart00338 BRLZ basic region l 46.9 1E+02 0.0022 22.5 6.4 19 185-203 28-46 (65)
137 PRK00106 hypothetical protein; 46.8 3.7E+02 0.008 28.2 15.5 12 152-163 49-60 (535)
138 KOG0250 DNA repair protein RAD 46.6 4.2E+02 0.0091 30.4 13.4 55 183-241 408-463 (1074)
139 PHA02562 46 endonuclease subun 46.6 2.7E+02 0.0059 27.5 11.1 20 151-170 260-279 (562)
140 PF06810 Phage_GP20: Phage min 45.6 2.1E+02 0.0045 25.0 9.6 13 260-272 83-95 (155)
141 COG1308 EGD2 Transcription fac 45.6 26 0.00057 30.3 3.5 24 59-82 98-121 (122)
142 KOG0976 Rho/Rac1-interacting s 45.6 2E+02 0.0044 32.5 10.7 73 172-244 54-143 (1265)
143 PF05300 DUF737: Protein of un 45.3 2E+02 0.0044 26.2 9.2 24 215-241 138-161 (187)
144 PRK13729 conjugal transfer pil 45.2 1.2E+02 0.0026 31.5 8.6 24 181-204 74-97 (475)
145 KOG0804 Cytoplasmic Zn-finger 44.1 4.1E+02 0.0088 28.0 12.7 76 159-240 370-447 (493)
146 PF04803 Cor1: Cor1/Xlr/Xmr co 43.9 1.9E+02 0.0042 24.8 8.5 35 197-241 75-109 (130)
147 PRK14872 rod shape-determining 43.7 57 0.0012 32.2 5.9 22 178-199 59-80 (337)
148 PRK11091 aerobic respiration c 43.1 3.9E+02 0.0085 27.5 12.6 21 151-171 80-100 (779)
149 COG4467 Regulator of replicati 43.1 40 0.00086 28.9 4.1 28 177-204 16-43 (114)
150 TIGR03007 pepcterm_ChnLen poly 42.9 3.4E+02 0.0074 26.7 11.2 25 62-86 165-189 (498)
151 PF10805 DUF2730: Protein of u 42.8 1.5E+02 0.0033 24.1 7.4 51 209-259 47-103 (106)
152 KOG0996 Structural maintenance 42.7 3.7E+02 0.0081 31.3 12.4 20 229-248 908-927 (1293)
153 COG1196 Smc Chromosome segrega 42.4 5.4E+02 0.012 28.9 16.7 6 277-282 514-519 (1163)
154 PF03961 DUF342: Protein of un 42.3 2.3E+02 0.0049 28.1 9.9 22 220-241 374-395 (451)
155 PF09726 Macoilin: Transmembra 42.0 4.1E+02 0.0089 28.7 12.2 51 219-272 550-600 (697)
156 PF10226 DUF2216: Uncharacteri 41.6 1.5E+02 0.0033 27.5 7.9 60 151-211 81-143 (195)
157 KOG0161 Myosin class II heavy 41.3 5.8E+02 0.013 31.1 14.1 87 131-219 1356-1443(1930)
158 KOG4809 Rab6 GTPase-interactin 41.3 3.1E+02 0.0067 29.6 10.9 62 171-242 326-387 (654)
159 PHA02067 hypothetical protein 41.0 83 0.0018 29.7 6.2 20 229-248 81-100 (221)
160 PF09728 Taxilin: Myosin-like 40.8 3.4E+02 0.0074 26.1 10.7 67 177-246 238-304 (309)
161 PF05667 DUF812: Protein of un 39.9 4.1E+02 0.009 28.2 11.7 58 181-245 361-418 (594)
162 KOG2273 Membrane coat complex 39.8 4E+02 0.0086 26.6 11.2 59 181-239 354-412 (503)
163 PF09726 Macoilin: Transmembra 39.6 5.1E+02 0.011 28.0 12.5 68 186-253 541-620 (697)
164 cd07429 Cby_like Chibby, a nuc 39.4 37 0.0008 28.7 3.4 21 179-199 82-102 (108)
165 PF11577 NEMO: NF-kappa-B esse 39.4 1.8E+02 0.004 22.6 8.3 20 189-208 5-24 (68)
166 PF05837 CENP-H: Centromere pr 39.2 2.1E+02 0.0046 23.3 10.5 26 180-205 7-32 (106)
167 PF12711 Kinesin-relat_1: Kine 39.0 2.1E+02 0.0046 23.3 7.9 35 179-217 27-67 (86)
168 PF13094 CENP-Q: CENP-Q, a CEN 38.9 2.4E+02 0.0053 23.9 9.1 55 184-248 28-82 (160)
169 KOG4552 Vitamin-D-receptor int 38.9 2.1E+02 0.0046 27.4 8.6 12 230-241 90-101 (272)
170 PF04156 IncA: IncA protein; 38.9 2.5E+02 0.0054 24.0 12.7 15 157-171 92-106 (191)
171 PF11488 Lge1: Transcriptional 38.8 1.4E+02 0.003 23.2 6.3 33 209-241 25-57 (80)
172 TIGR01837 PHA_granule_1 poly(h 38.8 2.3E+02 0.005 23.6 10.6 24 151-174 61-84 (118)
173 PRK05564 DNA polymerase III su 38.6 47 0.001 30.7 4.3 53 26-83 141-193 (313)
174 KOG1840 Kinesin light chain [C 38.3 3.7E+02 0.008 28.0 10.9 98 147-246 295-396 (508)
175 KOG4360 Uncharacterized coiled 38.2 5.3E+02 0.012 27.6 13.1 22 59-80 63-84 (596)
176 KOG4343 bZIP transcription fac 38.2 1.1E+02 0.0024 32.7 7.2 47 155-203 297-343 (655)
177 KOG1071 Mitochondrial translat 38.0 29 0.00063 34.5 2.9 41 45-86 47-87 (340)
178 PF12325 TMF_TATA_bd: TATA ele 37.8 2.5E+02 0.0055 23.8 13.3 57 181-237 28-84 (120)
179 PF05597 Phasin: Poly(hydroxya 37.7 2E+02 0.0043 24.8 7.6 25 151-175 74-98 (132)
180 PF05276 SH3BP5: SH3 domain-bi 37.4 3.6E+02 0.0078 25.4 18.4 131 153-285 74-239 (239)
181 PF06008 Laminin_I: Laminin Do 37.4 3.3E+02 0.0071 24.9 12.6 106 146-270 120-228 (264)
182 KOG2561 Adaptor protein NUB1, 37.3 1.9E+02 0.0042 30.5 8.7 37 45-83 430-466 (568)
183 PF03943 TAP_C: TAP C-terminal 37.3 14 0.0003 26.8 0.5 30 57-86 12-41 (51)
184 PF10458 Val_tRNA-synt_C: Valy 37.3 1.5E+02 0.0032 22.1 6.0 62 181-245 2-63 (66)
185 TIGR01005 eps_transp_fam exopo 37.3 4.2E+02 0.0091 27.8 11.3 16 182-197 315-330 (754)
186 KOG4571 Activating transcripti 37.1 58 0.0013 31.9 4.8 13 59-71 164-176 (294)
187 PF04102 SlyX: SlyX; InterPro 37.0 1.4E+02 0.003 22.6 5.9 24 222-245 19-42 (69)
188 PRK04195 replication factor C 36.7 52 0.0011 32.7 4.5 50 34-85 154-207 (482)
189 KOG2891 Surface glycoprotein [ 36.7 4.6E+02 0.0099 26.4 13.0 88 156-247 322-426 (445)
190 KOG3119 Basic region leucine z 36.6 1.3E+02 0.0029 28.3 7.0 41 186-236 218-258 (269)
191 COG1938 Archaeal enzymes of AT 36.1 58 0.0012 31.0 4.5 45 150-198 182-226 (244)
192 PF09730 BicD: Microtubule-ass 36.1 1.6E+02 0.0034 32.1 8.2 82 181-262 536-631 (717)
193 PF10174 Cast: RIM-binding pro 36.0 4.4E+02 0.0094 29.0 11.4 103 136-241 402-554 (775)
194 PRK10803 tol-pal system protei 35.8 3.3E+02 0.0071 25.4 9.4 40 178-220 63-102 (263)
195 PF05911 DUF869: Plant protein 35.5 6.4E+02 0.014 27.8 13.6 58 181-241 90-147 (769)
196 PRK02793 phi X174 lysis protei 35.4 1.4E+02 0.0031 23.0 5.8 26 222-247 23-48 (72)
197 KOG0971 Microtubule-associated 35.3 3.2E+02 0.0069 31.4 10.3 71 179-249 399-500 (1243)
198 PF14645 Chibby: Chibby family 35.1 45 0.00099 28.0 3.3 28 181-208 69-96 (116)
199 PRK10884 SH3 domain-containing 34.6 3.6E+02 0.0079 24.7 9.4 52 180-241 115-166 (206)
200 PRK03918 chromosome segregatio 34.6 5.7E+02 0.012 26.9 14.3 11 42-52 34-44 (880)
201 PF15070 GOLGA2L5: Putative go 34.5 6E+02 0.013 27.1 12.1 32 185-216 162-200 (617)
202 PF10267 Tmemb_cc2: Predicted 34.3 3.2E+02 0.007 27.7 9.5 44 195-241 274-318 (395)
203 PF15463 ECM11: Extracellular 34.2 1.6E+02 0.0034 25.0 6.5 60 133-197 70-133 (139)
204 PRK04863 mukB cell division pr 33.8 8.7E+02 0.019 28.8 13.9 13 229-241 412-424 (1486)
205 PRK10920 putative uroporphyrin 33.7 5.1E+02 0.011 26.1 11.0 55 181-241 65-119 (390)
206 COG5296 Transcription factor i 33.6 72 0.0015 33.0 4.9 47 187-241 351-397 (521)
207 PF06785 UPF0242: Uncharacteri 33.5 3.6E+02 0.0077 27.5 9.6 30 175-204 91-120 (401)
208 KOG0992 Uncharacterized conser 33.3 4E+02 0.0086 28.6 10.2 26 230-265 283-308 (613)
209 PRK04325 hypothetical protein; 33.3 1.6E+02 0.0034 22.8 5.8 26 222-247 24-49 (74)
210 PF07989 Microtub_assoc: Micro 33.2 1.1E+02 0.0025 23.8 5.0 22 215-236 51-72 (75)
211 PF11336 DUF3138: Protein of u 33.0 81 0.0018 32.8 5.2 63 183-245 25-107 (514)
212 KOG4807 F-actin binding protei 32.8 6.1E+02 0.013 26.7 11.4 74 167-241 336-427 (593)
213 PF00517 GP41: Retroviral enve 32.7 3.3E+02 0.0071 24.7 8.6 27 222-248 40-66 (204)
214 PRK04863 mukB cell division pr 32.6 9E+02 0.02 28.6 16.1 66 181-246 381-460 (1486)
215 PRK12704 phosphodiesterase; Pr 32.2 5.9E+02 0.013 26.4 14.7 11 152-162 34-44 (520)
216 TIGR01010 BexC_CtrB_KpsE polys 32.2 4.5E+02 0.0097 25.0 12.2 49 147-195 138-189 (362)
217 PF01008 IF-2B: Initiation fac 31.8 2.7E+02 0.0059 25.3 8.0 52 153-208 4-58 (282)
218 cd07685 F-BAR_Fes The F-BAR (F 31.7 4.7E+02 0.01 25.0 12.7 53 190-245 98-152 (237)
219 COG3883 Uncharacterized protei 31.6 4E+02 0.0087 25.8 9.3 75 176-280 45-119 (265)
220 PF05055 DUF677: Protein of un 31.5 5.2E+02 0.011 25.5 11.7 66 176-241 250-315 (336)
221 KOG2129 Uncharacterized conser 31.5 3.6E+02 0.0079 28.3 9.4 17 225-241 147-171 (552)
222 PRK05707 DNA polymerase III su 31.4 71 0.0015 30.7 4.3 53 24-81 152-204 (328)
223 TIGR03017 EpsF chain length de 31.4 4.8E+02 0.01 25.1 13.3 22 63-84 176-197 (444)
224 KOG4286 Dystrophin-like protei 31.2 1.3E+02 0.0028 33.5 6.5 55 202-273 193-248 (966)
225 KOG2751 Beclin-like protein [S 31.1 4.3E+02 0.0092 27.5 9.8 94 179-274 186-283 (447)
226 PRK00736 hypothetical protein; 31.1 1.9E+02 0.004 22.1 5.8 26 222-247 20-45 (68)
227 PRK00888 ftsB cell division pr 31.0 2E+02 0.0042 23.6 6.3 25 180-204 31-55 (105)
228 PRK13729 conjugal transfer pil 30.6 1.9E+02 0.004 30.2 7.3 23 133-155 53-75 (475)
229 KOG2077 JNK/SAPK-associated pr 30.6 3.1E+02 0.0067 30.0 9.0 35 214-248 336-370 (832)
230 COG0264 Tsf Translation elonga 30.5 42 0.00091 32.8 2.6 29 63-91 23-51 (296)
231 KOG0978 E3 ubiquitin ligase in 30.2 7.7E+02 0.017 27.1 14.0 24 259-282 111-134 (698)
232 PRK09458 pspB phage shock prot 30.2 90 0.0019 25.0 4.0 24 219-242 40-63 (75)
233 PF10018 Med4: Vitamin-D-recep 30.1 3.7E+02 0.0081 23.7 8.3 54 192-245 4-60 (188)
234 PRK00409 recombination and DNA 29.9 7.5E+02 0.016 26.9 13.3 11 229-239 578-588 (782)
235 TIGR03789 pdsO proteobacterial 29.9 2.7E+02 0.0059 26.1 7.8 33 220-252 107-140 (239)
236 PRK09112 DNA polymerase III su 29.6 70 0.0015 31.0 4.0 55 24-83 187-243 (351)
237 PF05384 DegS: Sensor protein 29.6 2.3E+02 0.005 25.2 6.9 43 206-248 19-61 (159)
238 KOG0612 Rho-associated, coiled 29.5 1E+03 0.022 28.2 14.6 96 141-239 443-550 (1317)
239 PF10267 Tmemb_cc2: Predicted 29.3 4.9E+02 0.011 26.4 9.9 22 220-241 61-82 (395)
240 PF09006 Surfac_D-trimer: Lung 29.3 1.1E+02 0.0025 22.5 4.1 24 225-248 3-26 (46)
241 PRK04132 replication factor C 29.1 55 0.0012 35.9 3.5 58 24-86 676-737 (846)
242 PF07361 Cytochrom_B562: Cytoc 29.1 3.1E+02 0.0068 22.2 8.8 88 143-237 15-102 (103)
243 KOG0250 DNA repair protein RAD 28.9 9.5E+02 0.021 27.7 13.9 99 146-244 204-311 (1074)
244 KOG4571 Activating transcripti 28.8 4.3E+02 0.0093 26.1 9.1 18 187-204 252-269 (294)
245 PF06156 DUF972: Protein of un 28.6 2.1E+02 0.0046 23.8 6.1 37 220-273 21-57 (107)
246 PRK09087 hypothetical protein; 28.5 54 0.0012 29.5 2.9 60 25-86 138-201 (226)
247 KOG2391 Vacuolar sorting prote 28.4 6.4E+02 0.014 25.6 11.1 110 146-257 211-339 (365)
248 PF12718 Tropomyosin_1: Tropom 28.4 3.8E+02 0.0083 23.0 10.2 64 178-241 37-100 (143)
249 COG4567 Response regulator con 28.4 62 0.0013 29.7 3.2 25 61-85 145-169 (182)
250 PF09730 BicD: Microtubule-ass 28.1 4.9E+02 0.011 28.5 10.2 22 62-83 283-304 (717)
251 PF03148 Tektin: Tektin family 28.1 5.9E+02 0.013 25.0 14.2 70 178-247 260-350 (384)
252 KOG0996 Structural maintenance 27.9 1.1E+03 0.023 27.9 14.1 55 184-240 835-897 (1293)
253 PRK14957 DNA polymerase III su 27.9 7.2E+02 0.016 26.0 13.6 55 26-85 167-225 (546)
254 KOG4643 Uncharacterized coiled 27.8 7.8E+02 0.017 28.6 11.8 28 193-220 460-487 (1195)
255 TIGR00570 cdk7 CDK-activating 27.8 6E+02 0.013 25.1 13.2 25 133-157 97-121 (309)
256 PRK01156 chromosome segregatio 27.8 7.8E+02 0.017 26.4 14.1 20 38-57 30-50 (895)
257 PF08654 DASH_Dad2: DASH compl 27.6 1.8E+02 0.004 24.0 5.6 40 223-262 16-58 (103)
258 PF10046 BLOC1_2: Biogenesis o 27.5 3.2E+02 0.007 21.9 13.1 27 215-241 53-79 (99)
259 PRK14950 DNA polymerase III su 27.5 7.1E+02 0.015 25.8 13.9 51 35-87 174-228 (585)
260 KOG4196 bZIP transcription fac 27.5 1.1E+02 0.0024 27.0 4.4 29 176-204 74-102 (135)
261 PF00170 bZIP_1: bZIP transcri 27.4 2.5E+02 0.0053 20.5 7.2 23 182-204 25-47 (64)
262 TIGR03825 FliH_bacil flagellar 27.4 4.9E+02 0.011 23.9 13.2 14 151-164 46-59 (255)
263 KOG2991 Splicing regulator [RN 27.1 3.9E+02 0.0085 26.5 8.4 58 172-239 104-161 (330)
264 PRK14872 rod shape-determining 27.0 2.8E+02 0.006 27.6 7.6 42 192-233 59-100 (337)
265 PF05667 DUF812: Protein of un 27.0 5.6E+02 0.012 27.2 10.2 70 182-262 327-396 (594)
266 cd07429 Cby_like Chibby, a nuc 26.9 76 0.0017 26.8 3.3 24 182-205 71-94 (108)
267 TIGR02231 conserved hypothetic 26.8 5.2E+02 0.011 26.0 9.7 18 224-241 148-165 (525)
268 PF12128 DUF3584: Protein of u 26.7 9.8E+02 0.021 27.1 13.3 19 221-239 469-487 (1201)
269 PF12128 DUF3584: Protein of u 26.5 9.8E+02 0.021 27.1 13.2 64 185-248 301-372 (1201)
270 KOG0447 Dynamin-like GTP bindi 26.3 3.1E+02 0.0068 30.1 8.2 81 182-268 225-308 (980)
271 PF01166 TSC22: TSC-22/dip/bun 26.3 1.1E+02 0.0024 23.6 3.8 21 221-241 14-34 (59)
272 TIGR01730 RND_mfp RND family e 26.2 2.5E+02 0.0054 25.1 6.6 20 222-241 110-129 (322)
273 PF12718 Tropomyosin_1: Tropom 26.1 4.2E+02 0.0092 22.7 11.7 66 179-244 24-89 (143)
274 PRK12402 replication factor C 26.0 92 0.002 28.2 3.9 50 34-85 178-231 (337)
275 PF07445 priB_priC: Primosomal 25.9 1.1E+02 0.0023 27.1 4.2 57 192-248 72-129 (173)
276 PRK00295 hypothetical protein; 25.7 2.7E+02 0.0057 21.3 5.8 25 223-247 21-45 (68)
277 TIGR02976 phageshock_pspB phag 25.5 1.2E+02 0.0027 23.9 4.0 23 219-241 40-62 (75)
278 PRK06975 bifunctional uroporph 25.4 8.3E+02 0.018 25.9 13.7 26 219-244 383-408 (656)
279 PF04977 DivIC: Septum formati 25.3 1.9E+02 0.004 21.0 4.8 22 181-202 22-43 (80)
280 PRK14011 prefoldin subunit alp 25.3 1.1E+02 0.0024 26.6 4.1 32 219-250 1-32 (144)
281 PHA02047 phage lambda Rz1-like 24.8 3.1E+02 0.0066 23.3 6.4 32 181-212 32-63 (101)
282 PF07407 Seadorna_VP6: Seadorn 24.5 2.2E+02 0.0047 29.0 6.4 25 177-203 40-64 (420)
283 PRK10361 DNA recombination pro 24.5 8.2E+02 0.018 25.5 12.4 18 234-251 98-115 (475)
284 PF14662 CCDC155: Coiled-coil 24.3 5.8E+02 0.013 23.7 10.9 58 178-235 104-172 (193)
285 PF08989 DUF1896: Domain of un 24.3 1.6E+02 0.0035 26.2 4.9 36 148-183 27-62 (144)
286 COG1792 MreC Cell shape-determ 24.3 2.2E+02 0.0047 27.1 6.2 10 220-229 96-105 (284)
287 PRK15471 chain length determin 24.2 6.7E+02 0.015 24.4 9.7 19 228-246 188-206 (325)
288 COG1196 Smc Chromosome segrega 24.1 1.1E+03 0.023 26.7 16.4 24 218-241 443-466 (1163)
289 PF09738 DUF2051: Double stran 24.1 6.8E+02 0.015 24.4 13.0 84 155-241 83-167 (302)
290 PRK07471 DNA polymerase III su 23.6 1.1E+02 0.0024 29.9 4.2 54 25-83 188-241 (365)
291 PLN02939 transferase, transfer 23.4 4.3E+02 0.0094 30.0 9.0 25 175-199 225-249 (977)
292 PF04849 HAP1_N: HAP1 N-termin 23.4 7.3E+02 0.016 24.5 11.3 22 59-80 63-84 (306)
293 PRK05896 DNA polymerase III su 23.4 1.1E+02 0.0024 32.4 4.5 58 26-88 167-228 (605)
294 PF08657 DASH_Spc34: DASH comp 23.4 6E+02 0.013 24.2 8.8 86 160-245 161-256 (259)
295 PF10241 KxDL: Uncharacterized 23.2 3.4E+02 0.0073 21.5 6.2 15 227-241 63-77 (88)
296 PF12004 DUF3498: Domain of un 23.2 27 0.00059 36.1 0.0 55 190-245 369-425 (495)
297 PF15254 CCDC14: Coiled-coil d 23.0 5.5E+02 0.012 28.8 9.4 93 160-265 360-461 (861)
298 PF06667 PspB: Phage shock pro 23.0 1.5E+02 0.0032 23.6 4.0 23 220-242 41-63 (75)
299 COG2959 HemX Uncharacterized e 23.0 7.4E+02 0.016 25.4 9.8 60 182-241 62-124 (391)
300 PF10168 Nup88: Nuclear pore c 23.0 4.2E+02 0.0091 28.7 8.6 19 65-83 496-514 (717)
301 PRK07993 DNA polymerase III su 22.9 1.4E+02 0.0031 28.7 4.7 53 24-82 154-206 (334)
302 KOG4077 Cytochrome c oxidase, 22.8 80 0.0017 28.2 2.8 27 59-85 83-111 (149)
303 PRK04406 hypothetical protein; 22.7 3.8E+02 0.0081 21.0 7.7 26 222-247 26-51 (75)
304 KOG0978 E3 ubiquitin ligase in 22.7 9.3E+02 0.02 26.5 11.0 38 182-219 495-532 (698)
305 KOG0447 Dynamin-like GTP bindi 22.7 4E+02 0.0087 29.4 8.2 56 174-241 231-296 (980)
306 smart00338 BRLZ basic region l 22.4 3.1E+02 0.0068 19.9 5.5 24 218-241 30-53 (65)
307 PRK14955 DNA polymerase III su 22.2 88 0.0019 30.4 3.2 52 34-87 180-235 (397)
308 PF05557 MAD: Mitotic checkpoi 22.1 4.2E+02 0.009 28.0 8.3 21 151-171 515-535 (722)
309 PF05622 HOOK: HOOK protein; 22.0 30 0.00065 36.3 0.0 30 215-244 350-379 (713)
310 PRK00846 hypothetical protein; 21.9 4.2E+02 0.009 21.2 7.1 25 223-247 29-53 (77)
311 PF06818 Fez1: Fez1; InterPro 21.9 6E+02 0.013 23.7 8.3 55 188-271 136-195 (202)
312 KOG4083 Head-elevated expressi 21.8 2E+02 0.0043 26.8 5.2 12 230-241 103-114 (192)
313 KOG4674 Uncharacterized conser 21.8 1.3E+03 0.028 28.3 12.6 95 149-248 1285-1380(1822)
314 KOG0989 Replication factor C, 21.7 1.2E+02 0.0025 30.5 3.9 58 26-88 177-238 (346)
315 PF05546 She9_MDM33: She9 / Md 21.7 6.8E+02 0.015 23.5 11.6 88 149-242 46-152 (207)
316 PF06548 Kinesin-related: Kine 21.6 1.9E+02 0.0041 30.2 5.5 16 219-234 124-139 (488)
317 cd07596 BAR_SNX The Bin/Amphip 21.4 4.9E+02 0.011 21.8 14.0 66 188-253 91-170 (218)
318 PF09340 NuA4: Histone acetylt 21.2 2.3E+02 0.005 22.3 4.8 12 230-241 18-29 (80)
319 KOG4807 F-actin binding protei 21.1 8.3E+02 0.018 25.7 9.8 45 179-223 424-468 (593)
320 PRK13169 DNA replication intia 21.1 3.5E+02 0.0076 22.8 6.1 22 220-241 21-42 (110)
321 KOG2264 Exostosin EXT1L [Signa 21.0 9.9E+02 0.021 26.4 10.6 30 212-241 105-134 (907)
322 KOG4643 Uncharacterized coiled 20.8 1.4E+03 0.03 26.8 12.3 37 165-201 396-433 (1195)
323 PF04849 HAP1_N: HAP1 N-termin 20.8 8.2E+02 0.018 24.2 12.2 67 150-216 207-274 (306)
324 PF07716 bZIP_2: Basic region 20.8 3.2E+02 0.0069 19.4 6.1 24 218-241 29-52 (54)
325 PF10200 Ndufs5: NADH:ubiquino 20.5 3.5E+02 0.0076 22.5 5.9 25 192-216 63-87 (96)
326 KOG4603 TBP-1 interacting prot 20.4 3.4E+02 0.0073 25.3 6.3 75 173-247 24-105 (201)
327 PF08336 P4Ha_N: Prolyl 4-Hydr 20.3 3.8E+02 0.0083 22.1 6.2 44 220-270 28-71 (134)
328 PF12999 PRKCSH-like: Glucosid 20.3 6.6E+02 0.014 22.9 8.6 9 231-239 163-171 (176)
329 PF05769 DUF837: Protein of un 20.2 6.4E+02 0.014 22.7 11.6 37 192-241 72-108 (181)
330 PF02268 TFIIA_gamma_N: Transc 20.2 1E+02 0.0022 22.8 2.4 28 142-171 19-46 (49)
331 PF04012 PspA_IM30: PspA/IM30 20.2 6E+02 0.013 22.4 14.0 34 215-248 99-132 (221)
332 PF14197 Cep57_CLD_2: Centroso 20.1 4.1E+02 0.009 20.4 9.1 22 181-202 3-24 (69)
333 KOG1937 Uncharacterized conser 20.1 3.6E+02 0.0078 28.4 7.1 17 178-194 412-428 (521)
334 KOG3759 Uncharacterized RUN do 20.1 7.3E+02 0.016 26.6 9.3 15 227-241 226-240 (621)
335 PF12037 DUF3523: Domain of un 20.0 8.2E+02 0.018 23.8 12.3 20 153-172 32-51 (276)
No 1
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=98.91 E-value=1.9e-08 Score=102.93 Aligned_cols=122 Identities=28% Similarity=0.310 Sum_probs=106.0
Q ss_pred ChhhHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 133 DGPEWVELFVREMMSS-SNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHE 211 (286)
Q Consensus 133 ~g~eWVEl~V~EM~sA-sd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQhe 211 (286)
.|-.+|.-||.|.+.. +...+...|..+.++..|+.+...+..++. ....|..++|..++.|..+...|++++..+++
T Consensus 308 e~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al-~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e 386 (632)
T PF14817_consen 308 EQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREAL-ALELEVAGLKASLNALRSECQRLKEAAAERQE 386 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666555544 457888899999999999998777666544 57779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHHHHhh
Q 023202 212 RQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAE 272 (286)
Q Consensus 212 R~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL~qa~ 272 (286)
...+++.+.|++.+++++|.+||+|||+|. .+||++.+||.+..
T Consensus 387 ~~~~Lq~K~q~I~~frqlv~e~QeqIr~Li-----------------K~Nsaakt~L~q~~ 430 (632)
T PF14817_consen 387 ALRSLQAKWQRILDFRQLVSEKQEQIRALI-----------------KGNSAAKTQLEQSP 430 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhHHHHHHHHhCh
Confidence 999999999999999999999999999999 99999999998754
No 2
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=98.27 E-value=1.8e-06 Score=59.13 Aligned_cols=40 Identities=30% Similarity=0.678 Sum_probs=35.9
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
+..+.+|+.+||++++..|+.+|+++++|+|.||..|.++
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3568999999999999999999999999999999999764
No 3
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=98.22 E-value=2.5e-06 Score=58.48 Aligned_cols=38 Identities=26% Similarity=0.594 Sum_probs=35.5
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
..++.|+.+||++++.+++.+|++|++|++.||..|.+
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 46899999999999999999999999999999998864
No 4
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=97.36 E-value=0.00039 Score=48.86 Aligned_cols=35 Identities=29% Similarity=0.601 Sum_probs=32.9
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 023202 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSL 81 (286)
Q Consensus 47 ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL 81 (286)
.++-|..+||+..+.+||.+|+.||.|+-.||.-+
T Consensus 4 pidiL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 4 PIDILTRVFPHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHHHHHHHCCCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 48999999999999999999999999999999864
No 5
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.84 E-value=0.15 Score=40.54 Aligned_cols=69 Identities=32% Similarity=0.382 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 161 ALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTL 240 (286)
Q Consensus 161 vLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~L 240 (286)
|||-+|.-|.. +-+.+.-+|.|...|||.-..|.+|-. ..||.| +...+|..+||+--..+||+||.|
T Consensus 5 v~ekLE~Kiqq--AvdTI~LLQmEieELKEknn~l~~e~q------~~q~~r----eaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 5 VFEKLEAKVQQ--AIDTITLLQMEIEELKEKNNSLSQEVQ------NAQHQR----EALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHhHHHHH------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544543 345677789999999887777766643 345555 556788999999999999999987
Q ss_pred h
Q 023202 241 E 241 (286)
Q Consensus 241 E 241 (286)
=
T Consensus 73 L 73 (79)
T COG3074 73 L 73 (79)
T ss_pred H
Confidence 3
No 6
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.77 E-value=0.023 Score=37.84 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=30.8
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSL 81 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL 81 (286)
+..|.+|..+ +.++....+||..||+|++.||.-|
T Consensus 3 ~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 3 EEKVQQLMEM--GFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 3568999999 9999999999999999999999865
No 7
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.59 E-value=0.27 Score=44.20 Aligned_cols=68 Identities=28% Similarity=0.388 Sum_probs=53.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMT 248 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~ 248 (286)
+..++-+...|+..++.+..||.+||+.=.-|--....|++-..++ .|++.++.+.||+|-.-+|..+
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~L---pqll~~h~eEvr~Lr~~LR~~q 81 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAEL---PQLLQRHNEEVRVLRERLRKSQ 81 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999987666666677777666555 6677788887877777777666
No 8
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.63 E-value=0.58 Score=37.59 Aligned_cols=69 Identities=30% Similarity=0.404 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 160 RALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 160 RvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~ 239 (286)
-+|+-||.=|-+ +-|.+.-+++|...||++-..|.+|+.-++ +.| +...+|.++||+--..+|++||.
T Consensus 4 EvleqLE~KIqq--AvdtI~LLqmEieELKekn~~L~~e~~~~~------~~r----~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 4 EVFEKLEAKVQQ--AIDTITLLQMEIEELKEKNNSLSQEVQNAQ------HQR----EELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566655544 445678899999999999888888876543 333 44578899999999999999998
Q ss_pred H
Q 023202 240 L 240 (286)
Q Consensus 240 L 240 (286)
|
T Consensus 72 L 72 (79)
T PRK15422 72 L 72 (79)
T ss_pred H
Confidence 7
No 9
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.73 E-value=1.1 Score=34.85 Aligned_cols=62 Identities=40% Similarity=0.460 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 160 RALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 160 RvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~ 239 (286)
.+|+-||.=|.+ +-+...-++.|+..||++...|..+|.-|+. |.++|++--.+++++|+.
T Consensus 4 E~l~~LE~ki~~--aveti~~Lq~e~eeLke~n~~L~~e~~~L~~-----------------en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 4 ELLEQLEEKIQQ--AVETIALLQMENEELKEKNNELKEENEELKE-----------------ENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH
Confidence 356666666654 3345677888888888887777766665543 444445555555555554
Q ss_pred H
Q 023202 240 L 240 (286)
Q Consensus 240 L 240 (286)
|
T Consensus 65 L 65 (72)
T PF06005_consen 65 L 65 (72)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=93.26 E-value=1.8 Score=38.05 Aligned_cols=76 Identities=32% Similarity=0.346 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 023202 159 SRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQH-ERQKEYED-RSQELHHLKQLVSQYQEQ 236 (286)
Q Consensus 159 sRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQh-eR~~e~e~-~~~E~~~lkqlv~qyqeq 236 (286)
=+|||.||.++..+... +-|...|++..+.|..+..- ++...-|- .+..++++ -.+|.+.|..-|++.+++
T Consensus 32 V~vLE~Le~~~~~n~~~------~~e~~~L~~d~e~L~~q~~~-ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e 104 (158)
T PF09744_consen 32 VRVLELLESLASRNQEH------EVELELLREDNEQLETQYER-EKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEE 104 (158)
T ss_pred HHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999888776533 34566777777777766543 22233222 33444443 346777777788888888
Q ss_pred HHHHh
Q 023202 237 LRTLE 241 (286)
Q Consensus 237 ~r~LE 241 (286)
.|.|+
T Consensus 105 ~r~L~ 109 (158)
T PF09744_consen 105 NRQLE 109 (158)
T ss_pred HHHHH
Confidence 88888
No 11
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=92.17 E-value=0.37 Score=31.45 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=29.5
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSL 81 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL 81 (286)
..+.+|..+ +.++.-...||+.||+|++.|+.-|
T Consensus 3 ~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 3 EKIDQLLEM--GFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 357788887 7889999999999999999998765
No 12
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=91.92 E-value=0.42 Score=31.27 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=29.7
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
..+.+|..+ +.+.+....||+.|++|++.|+.-|.
T Consensus 3 ~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 3 EKLEQLLEM--GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 457778876 67799999999999999999998764
No 13
>PF15058 Speriolin_N: Speriolin N terminus
Probab=90.89 E-value=0.35 Score=44.44 Aligned_cols=26 Identities=46% Similarity=0.533 Sum_probs=19.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRA 205 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrA 205 (286)
+.+=.||+.||+|+ +||+||+-||||
T Consensus 15 erLv~ENeeLKKlV-rLirEN~eLksa 40 (200)
T PF15058_consen 15 ERLVRENEELKKLV-RLIRENHELKSA 40 (200)
T ss_pred HHHHhhhHHHHHHH-HHHHHHHHHHHH
Confidence 33446888888877 488888888888
No 14
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.09 E-value=6.1 Score=31.29 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHh----hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 162 LEILEKSICARA----SAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQL 237 (286)
Q Consensus 162 LEafEKsi~~ra----~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~ 237 (286)
.+.+.+++..|. .-+..-.+.++...++.+++.|..+-+.+-+.+..--.-..+.++...|...+|.-+..+.+++
T Consensus 11 ~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 11 PEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777773 2334445667888888888888888888888776655444577788889999999999999999
Q ss_pred HHHhhhh
Q 023202 238 RTLETSW 244 (286)
Q Consensus 238 r~LE~~~ 244 (286)
+.+|..+
T Consensus 91 ~~~e~~l 97 (108)
T PF02403_consen 91 KELEEEL 97 (108)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999443
No 15
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=89.99 E-value=0.6 Score=38.16 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=29.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHER 212 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR 212 (286)
...++|+..|+.++..|..||.|||+|..|=..|
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 3468899999999999999999999999885443
No 16
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.78 E-value=7.9 Score=35.30 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQH---ERQKEYEDRSQELHHLKQLVSQYQEQLRTLET 242 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQh---eR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~ 242 (286)
+++|...||.++..+.++.. .+.-.+|. ++.+...+...|.+.|++-+.+.+.+++.||+
T Consensus 98 le~el~~l~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWN--QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666655533 11111222 23333444566677777777777888887773
No 17
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.36 E-value=15 Score=33.07 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccch
Q 023202 180 SFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQV 259 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~ 259 (286)
...+|...|+.++....++...|+.+-.....-.+++.+...|-..|.|-+.+-+..-..|. =|.+..+.|+---...
T Consensus 66 ~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~--~kf~~~i~evqQk~~~ 143 (201)
T PF13851_consen 66 KAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY--RKFESAIQEVQQKTGL 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555444 1222333343333334
Q ss_pred hhHHHHHHHH
Q 023202 260 NNYALTMHLK 269 (286)
Q Consensus 260 ~NyaL~~hL~ 269 (286)
.|+.|.--|+
T Consensus 144 kn~lLEkKl~ 153 (201)
T PF13851_consen 144 KNLLLEKKLQ 153 (201)
T ss_pred HHHHHHHHHH
Confidence 4554444333
No 18
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=87.33 E-value=4.6 Score=37.19 Aligned_cols=57 Identities=33% Similarity=0.432 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHh
Q 023202 184 ENKMLKEQVEALIQENMILKRAVSIQH-ERQKEYEDRSQEL--------HHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 184 En~~lKeq~~~l~~eN~iLKrAv~IQh-eR~~e~e~~~~E~--------~~lkqlv~qyqeq~r~LE 241 (286)
|+.+||+-.++|..||.=|+-.-.+.- .|||--. ..+|- .-+++-|++|+.+|+.||
T Consensus 56 EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta~vmr~eV~~Y~~KL~eLE 121 (195)
T PF10226_consen 56 EIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTASVMRQEVAQYQQKLKELE 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999998887666553 3554332 23333 335788999999999998
No 19
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=86.72 E-value=5.9 Score=33.12 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q 023202 193 EALIQENMILKRAVS 207 (286)
Q Consensus 193 ~~l~~eN~iLKrAv~ 207 (286)
..|-.+|.+||+||-
T Consensus 8 sKLraQ~~vLKKaVi 22 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVI 22 (102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346678999999997
No 20
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.57 E-value=35 Score=38.40 Aligned_cols=67 Identities=33% Similarity=0.445 Sum_probs=51.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHH---------------------
Q 023202 175 AEAAQSFHQENKMLKEQVEALIQENMILKR------------------AVSIQHERQKE--------------------- 215 (286)
Q Consensus 175 ae~~~~~~kEn~~lKeq~~~l~~eN~iLKr------------------Av~IQheR~~e--------------------- 215 (286)
.|-++.+|.|.++|||.++.|..+--|||- =+-+||.|.||
T Consensus 324 EERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~k 403 (1243)
T KOG0971|consen 324 EERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQK 403 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 455688999999999999999988888874 24577777654
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 216 -YEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 216 -~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
.|.+..|+..|++.-...+.++..+|
T Consensus 404 elE~k~sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 404 ELEKKNSELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788777777777777777
No 21
>PRK11637 AmiB activator; Provisional
Probab=84.40 E-value=40 Score=32.95 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=25.4
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 145 MMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQK 214 (286)
Q Consensus 145 M~sAsd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~ 214 (286)
+.++.++++ ..|++..|.... ....+..+.+...-..|..+...+..+..-|+....-+-..+.
T Consensus 145 Ll~a~~~~~----~~r~~~~l~~i~--~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~ 208 (428)
T PRK11637 145 ILSGEESQR----GERILAYFGYLN--QARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQ 208 (428)
T ss_pred HhcCCChhH----HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666543 334444444322 1233334444443333433333333333333333333333333
No 22
>PHA02047 phage lambda Rz1-like protein
Probab=83.03 E-value=7.8 Score=32.51 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 203 KRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 203 KrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
.|+..|=|++-+.. ...|.+++.-+..||+++..||
T Consensus 26 ~r~~g~~h~~a~~l---a~qLE~a~~r~~~~Q~~V~~l~ 61 (101)
T PHA02047 26 YRALGIAHEEAKRQ---TARLEALEVRYATLQRHVQAVE 61 (101)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888887766 5678888889999999999999
No 23
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=82.88 E-value=2.5 Score=29.03 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=28.5
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 47 ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
.|.++..+- +.++.+-...|+.|+.||+.||..+.+
T Consensus 3 ~i~~F~~iT-g~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 3 KIAQFMSIT-GADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHH--SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 466666666 569999999999999999999988765
No 24
>PLN02678 seryl-tRNA synthetase
Probab=82.73 E-value=20 Score=36.27 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=41.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
.-.+.+|-..++.+++.|..|.+.+-+.+..=..-..+.++...|.++||+-+.+..++++.+|
T Consensus 35 il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~ 98 (448)
T PLN02678 35 VIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAK 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556667777777777777777766654222223445556677777777777777777777
No 25
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=81.90 E-value=12 Score=36.36 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 023202 219 RSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 219 ~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
...++.|++.+..|.++.||.||
T Consensus 96 Leddlsqt~aikeql~kyiReLE 118 (333)
T KOG1853|consen 96 LEDDLSQTHAIKEQLRKYIRELE 118 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999999999
No 26
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=81.62 E-value=14 Score=35.55 Aligned_cols=65 Identities=35% Similarity=0.328 Sum_probs=45.5
Q ss_pred HHHhhHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 170 CARASAEAAQS--------FHQENKMLKEQVEALIQENMILKR----AVSIQHERQKEYEDRSQELHHLKQLVSQYQE 235 (286)
Q Consensus 170 ~~ra~ae~~~~--------~~kEn~~lKeq~~~l~~eN~iLKr----Av~IQheR~~e~e~~~~E~~~lkqlv~qyqe 235 (286)
..|++|+.+.+ +..|.+.|-|.-+.|..||..|.+ .+.-||+--.+++...+||-.|||- -||+-
T Consensus 76 KNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~-~~~~~ 152 (292)
T KOG4005|consen 76 KNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ-QQHNT 152 (292)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH-HHHhh
Confidence 34566555433 344666677777777777777754 5788999999999999999999983 34443
No 27
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.62 E-value=41 Score=30.57 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=39.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 175 AEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHH 225 (286)
Q Consensus 175 ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~ 225 (286)
.+..+.+..|...|+.+++.|...|.-|++-|.-|+....+.+.+..++..
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888888888888888999999888888888887766655543
No 28
>PF15058 Speriolin_N: Speriolin N terminus
Probab=81.37 E-value=3.6 Score=37.99 Aligned_cols=37 Identities=35% Similarity=0.496 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 185 NKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQ 232 (286)
Q Consensus 185 n~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~q 232 (286)
.+.|.+|+++|.+||.=||+-|.. -+|.|.||.++.|
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrL-----------irEN~eLksaL~e 43 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRL-----------IRENHELKSALGE 43 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 356899999999999999998865 3466777777554
No 29
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=81.25 E-value=25 Score=34.94 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=43.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSW 244 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~ 244 (286)
..-.+.++-..|+.+++.|..+.+.+-+.+..-.....+.+....|...||+-+.+..++++++|..+
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777888888877777777754222222444556667777777777777777777333
No 30
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=81.22 E-value=14 Score=36.68 Aligned_cols=66 Identities=36% Similarity=0.484 Sum_probs=48.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH----------HHHHH-------HHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQK--EYEDRSQELHHLKQL----------VSQYQ-------EQLRT 239 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~--e~e~~~~E~~~lkql----------v~qyq-------eq~r~ 239 (286)
+.+|-.|-.|+.|++.-..||+||-+. .||| |.|...|-++.|... |-.|| |.-||
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~-----hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrt 77 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKM-----HRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRT 77 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999885 4666 556666766666543 34566 44577
Q ss_pred HhhhhhHHHH
Q 023202 240 LETSWRLMTL 249 (286)
Q Consensus 240 LE~~~~~~~~ 249 (286)
||..|-|-|.
T Consensus 78 LeRELARaKV 87 (351)
T PF07058_consen 78 LERELARAKV 87 (351)
T ss_pred HHHHHHHhhh
Confidence 7766666663
No 31
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=81.20 E-value=26 Score=31.30 Aligned_cols=102 Identities=15% Similarity=0.247 Sum_probs=55.6
Q ss_pred CCCChhhHHHHHHHHHhcCCChHHHHHHHHHHH---HHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-H
Q 023202 130 FQLDGPEWVELFVREMMSSSNIDDARARASRAL---EILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKR-A 205 (286)
Q Consensus 130 ~p~~g~eWVEl~V~EM~sAsd~dDARaRAsRvL---EafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKr-A 205 (286)
+..+.-+|++++.+-..+.-.+.|-+.+..-=| +...+ ...+..+-..-+......+.++++.|.+.-..+-. .
T Consensus 38 y~~~dl~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~--G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~v 115 (175)
T PRK13182 38 FTEEDLQLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTI--VQNISSVDFEQLEAQLNTITRRLDELERQLQQKADDV 115 (175)
T ss_pred ECHHHHHHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334456899999999999999999988663111 00000 00000011111333333344444444333222222 1
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 206 V---SIQHERQKEYEDRSQELHHLKQLVSQYQE 235 (286)
Q Consensus 206 v---~IQheR~~e~e~~~~E~~~lkqlv~qyqe 235 (286)
| ..||.| |.|+....+++|.|.+++-.+
T Consensus 116 vsYqll~hr~--e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 116 VSYQLLQHRR--EMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred hhHHHHHhHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 2 246765 888888999999888888443
No 32
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.03 E-value=11 Score=38.77 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=31.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+.+.++|+.||++.++|.+...-+.. .||..-..+-.+..+|.++|++-+.+.+.+|..|.
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~--~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQ--QIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777666666553322221 23333333333444555555555555555555555
No 33
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.62 E-value=58 Score=31.25 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023202 220 SQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 220 ~~E~~~lkqlv~qyqeq~r~LE 241 (286)
..|++.++.-+...++|+..|+
T Consensus 112 ~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 112 QEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 34
>KOG4588 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=79.56 E-value=4.4 Score=38.66 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=29.7
Q ss_pred hCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhh
Q 023202 54 IFPDMDNQILDRALEECGDDLDSAIRSLNELR 85 (286)
Q Consensus 54 lFP~mD~q~le~aLe~cGndlDsAIksL~~L~ 85 (286)
+||.||-+++|-+|++.=-++|.+|.-|....
T Consensus 1 Mfp~~Dye~ie~VlranlgavD~tid~llaM~ 32 (267)
T KOG4588|consen 1 MFPYDDYEDIEGVLRANLGAVDRTIDDLLAMF 32 (267)
T ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 69999999999999999889999999988765
No 35
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.04 E-value=27 Score=30.41 Aligned_cols=66 Identities=26% Similarity=0.279 Sum_probs=42.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccc
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQ 258 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~ 258 (286)
.+-++|+..|+++++.+..+...|.- |+..-..|...|.+.+.+-|++|..||
T Consensus 48 En~k~eie~L~~el~~lt~el~~L~~----------EL~~l~sEk~~L~k~lq~~q~kv~eLE----------------- 100 (140)
T PF10473_consen 48 ENSKAEIETLEEELEELTSELNQLEL----------ELDTLRSEKENLDKELQKKQEKVSELE----------------- 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 44566777788888888777766643 333334555556666666777777777
Q ss_pred hhhHHHHHHHHHh
Q 023202 259 VNNYALTMHLKQA 271 (286)
Q Consensus 259 ~~NyaL~~hL~qa 271 (286)
..|..+.-||+-.
T Consensus 101 ~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 101 SLNSSLENLLQEK 113 (140)
T ss_pred HHhHHHHHHHHHH
Confidence 6666666666544
No 36
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=78.67 E-value=8 Score=32.09 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
.+.+..+...||.++..|+.||.-|+.
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999999998875
No 37
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=78.59 E-value=33 Score=33.98 Aligned_cols=62 Identities=26% Similarity=0.392 Sum_probs=34.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQK-E-YEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~-e-~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
-.+.++-..++.+++.|..|.+.+-+.+.. ..+.+ + .+....+...||+-+.++.++++.+|
T Consensus 33 ~~ld~~~r~~~~~~~~l~~erN~~sk~i~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 96 (418)
T TIGR00414 33 IALDDERKKLLSEIEELQAKRNELSKQIGK-AKGQKKDKIEEIKKELKELKEELTELSAALKALE 96 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666677776666655555533 11111 1 34444556666666666666666666
No 38
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=77.78 E-value=58 Score=30.00 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhhHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 023202 159 SRALEILEKSICARASAEAA--QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRS----QELHHLKQLVSQ 232 (286)
Q Consensus 159 sRvLEafEKsi~~ra~ae~~--~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~----~E~~~lkqlv~q 232 (286)
..+.+.|||.|...-..... ...+.+...+....+.+..+-.-+-++|+=.|.|..-+.+-. .-=.-||.-+..
T Consensus 43 ~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~e 122 (207)
T PF05010_consen 43 RKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEE 122 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46889999988885544211 111223333333444455555677888888888866544321 222347888999
Q ss_pred HHHHHHHHh
Q 023202 233 YQEQLRTLE 241 (286)
Q Consensus 233 yqeq~r~LE 241 (286)
|.+.|+..|
T Consensus 123 y~~~l~~~e 131 (207)
T PF05010_consen 123 YEERLKKEE 131 (207)
T ss_pred HHHHHHHHH
Confidence 999999998
No 39
>COG4797 Predicted regulatory domain of a methyltransferase [General function prediction only]
Probab=77.42 E-value=1.8 Score=41.37 Aligned_cols=25 Identities=48% Similarity=0.918 Sum_probs=23.2
Q ss_pred HHhhCC-CCCHHHHHHHHHHcCCCHH
Q 023202 51 LAAIFP-DMDNQILDRALEECGDDLD 75 (286)
Q Consensus 51 L~~lFP-~mD~q~le~aLe~cGndlD 75 (286)
|.+.|| .|++++.|+.+.+||||+=
T Consensus 4 ls~~f~~nm~~~i~E~L~A~~gdD~i 29 (268)
T COG4797 4 LSATFPGNMPEHIEEKLLAECGDDII 29 (268)
T ss_pred hhhhccccCCHHHHHHHHhhcccchh
Confidence 789999 8999999999999999973
No 40
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.38 E-value=26 Score=36.11 Aligned_cols=56 Identities=30% Similarity=0.416 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAV-SIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv-~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~ 239 (286)
+++||+.||++...+-+. +-.|| +.+.+-+++.+....|+++++.++.+.+.|+..
T Consensus 85 l~~eN~~L~~r~~~id~~---i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 85 LKAENERLQKREQSIDQQ---IQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHhhhhHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666666544433222 22333 223333334444455566666666666665543
No 41
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=76.87 E-value=36 Score=29.59 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYED-RSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~-~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+...+..++.+-..+..-|.-|.++ .++-++...++. ..+++.+...+..+.+.+|+.|-
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l-~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~ 88 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVL-LALAKRNEEAQAQLRQQLAQARALLAQREQRIERLK 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555556666554 566666565554 34778888899999999999998
No 42
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=76.40 E-value=9.5 Score=32.02 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=23.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
..+.+.+|...||.++..|+.||.-|+.
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455888999999999999999998864
No 43
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=76.20 E-value=29 Score=33.27 Aligned_cols=101 Identities=19% Similarity=0.365 Sum_probs=62.0
Q ss_pred cCCCChhhHHHHHHHHHhcCCChHHHHHHHHH-H--HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 129 VFQLDGPEWVELFVREMMSSSNIDDARARASR-A--LEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRA 205 (286)
Q Consensus 129 ~~p~~g~eWVEl~V~EM~sAsd~dDARaRAsR-v--LEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrA 205 (286)
.+...|+.--++|=+|+ ++-++|.+|.. - +.-+||+|.+. ..+..++...++.++..+..+..-|..-
T Consensus 128 eit~~GA~LydlL~kE~----~lr~~R~~a~~r~~e~~~iE~~l~~a-----i~~~~~~~~~~~~~l~~l~~de~~Le~K 198 (267)
T PF10234_consen 128 EITQRGASLYDLLGKEV----ELREERQRALARPLELNEIEKALKEA-----IKAVQQQLQQTQQQLNNLASDEANLEAK 198 (267)
T ss_pred HHHHHHHHHHHHHhchH----hHHHHHHHHHcCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999998 56677766654 2 34467777653 4446777777888887777776554322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 206 VSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 206 v~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+ -.|..|+|-..+.|+.|+.+-.-|.+...+||
T Consensus 199 I---ekkk~ELER~qKRL~sLq~vRPAfmdEyEklE 231 (267)
T PF10234_consen 199 I---EKKKQELERNQKRLQSLQSVRPAFMDEYEKLE 231 (267)
T ss_pred H---HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 2 12333554444555555555555555555555
No 44
>PRK02224 chromosome segregation protein; Provisional
Probab=75.44 E-value=99 Score=32.61 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=34.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTL 240 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~L 240 (286)
..++.+...+++++..+.++-..+++-+.--+.+.++++.+.+++..+..-+...++++..+
T Consensus 209 ~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~ 270 (880)
T PRK02224 209 NGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAET 270 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666665555666666555555544444444444444444
No 45
>PRK09039 hypothetical protein; Validated
Probab=75.34 E-value=83 Score=30.55 Aligned_cols=66 Identities=23% Similarity=0.200 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 151 IDDARARASRALEIL--EKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYE 217 (286)
Q Consensus 151 ~dDARaRAsRvLEaf--EKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e 217 (286)
...+..|+...=+.| +|.+.+.+.++ +..++.|+..||+|+..|..+-..++.--.-++.+..+++
T Consensus 111 ~~~~~~~~~~l~~~L~~~k~~~se~~~~-V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 111 GAAAEGRAGELAQELDSEKQVSARALAQ-VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555655543333 33444444453 3446666666666666666666666665555555555554
No 46
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=74.97 E-value=42 Score=26.91 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=62.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 148 SSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLK 227 (286)
Q Consensus 148 Asd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lk 227 (286)
...+++|-.|=.+.|..||++|..|-...... ..+.+.++.|..+..-|-..+--.-.|....+.-+.|+.+
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~~~~~------~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~-- 74 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLERDRKR------DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR-- 74 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH--
Confidence 45789999999999999999999987764322 5567777778888777877777777888888888888754
Q ss_pred HHHHHHHHHHHH
Q 023202 228 QLVSQYQEQLRT 239 (286)
Q Consensus 228 qlv~qyqeq~r~ 239 (286)
-+.-..|.||.
T Consensus 75 -rL~~a~e~Ir~ 85 (89)
T PF13747_consen 75 -RLDSAIETIRA 85 (89)
T ss_pred -HHHHHHHHHHH
Confidence 34444555554
No 47
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=74.79 E-value=17 Score=33.61 Aligned_cols=58 Identities=29% Similarity=0.426 Sum_probs=37.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023202 177 AAQSFHQENKMLKEQVEALIQ-------ENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLET 242 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~-------eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~ 242 (286)
.-+.+..++..|.+++..|.+ |-..|-.++.| ++.+.+.+.|+..|..|.|+|..+-+
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~--------eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT--------EEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666654 34455555544 34566777788888888888877653
No 48
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=74.74 E-value=24 Score=31.69 Aligned_cols=64 Identities=28% Similarity=0.413 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchh
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVN 260 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~ 260 (286)
+.+-|.||++|++.....|.-|. .+++.|.+=+..+++.|..=|..||.+.-.|--.++...+
T Consensus 79 L~qvN~lLReQLEq~~~~N~~L~-----------------~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~ 141 (182)
T PF15035_consen 79 LAQVNALLREQLEQARKANEALQ-----------------EDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHS 141 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 77789999999999999998774 3566666677777777777777888777666666655544
Q ss_pred h
Q 023202 261 N 261 (286)
Q Consensus 261 N 261 (286)
.
T Consensus 142 r 142 (182)
T PF15035_consen 142 R 142 (182)
T ss_pred H
Confidence 3
No 49
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=73.95 E-value=8.6 Score=33.06 Aligned_cols=41 Identities=29% Similarity=0.299 Sum_probs=29.7
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 167 KSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVS 207 (286)
Q Consensus 167 Ksi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~ 207 (286)
|+=.-.|-.|+.+.++.-+..|-++..+|-+||.+||+-+.
T Consensus 58 KtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 58 KTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 33334455566777777788888888888899999988654
No 50
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=73.68 E-value=18 Score=40.97 Aligned_cols=79 Identities=23% Similarity=0.281 Sum_probs=53.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 023202 175 AEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHH-LKQLVSQYQEQLRTLETSWRLMTLMFDL 253 (286)
Q Consensus 175 ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~-lkqlv~qyqeq~r~LE~~~~~~~~~~~~ 253 (286)
+.....+..|.+.|.+||+. |=+.|-. +++++.+|... ++++-..|.|+|+.+|
T Consensus 363 arvirElReEve~lr~qL~~----------ae~~~~~---el~e~l~esekli~ei~~twEEkl~ktE------------ 417 (1714)
T KOG0241|consen 363 ARVIRELREEVEKLREQLEQ----------AEAMKLP---ELKEKLEESEKLIKEITVTWEEKLRKTE------------ 417 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHhh----------hhhccch---HHHHHHHHHHHHHHHHHhHHHHHHHHHH------------
Confidence 43445555666666655543 3333333 44445555544 4677788999999999
Q ss_pred hhccchhhHHHHHHHHHhhhcCCCCCCCCC
Q 023202 254 VLSNQVNNYALTMHLKQAEHSNSIPGRFHP 283 (286)
Q Consensus 254 ~~~~~~~NyaL~~hL~qa~~~~~~~g~~~P 283 (286)
.-|-++.-||..+..+--.+|.|.-
T Consensus 418 -----~in~erq~~L~~~gis~~~sgikv~ 442 (1714)
T KOG0241|consen 418 -----EINQERQAQLESMGISLENSGIKVG 442 (1714)
T ss_pred -----HHHHHHHHHHHHHHHHHhccccccc
Confidence 8899999999998887777777653
No 51
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=73.62 E-value=38 Score=29.93 Aligned_cols=63 Identities=32% Similarity=0.421 Sum_probs=46.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELH-HLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~-~lkqlv~qyqeq~r~LE 241 (286)
+.+.+|.+.|..+++.|..+|.-|..-+.-.+.....++++..++. .++.+...|.+-|+++=
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~ 148 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLK 148 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999998666555555555555555543 56677777777777764
No 52
>PRK03918 chromosome segregation protein; Provisional
Probab=72.95 E-value=1.3e+02 Score=31.61 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=20.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 023202 141 FVREMMSSSNIDDARARASRALEILEKSICA 171 (286)
Q Consensus 141 ~V~EM~sAsd~dDARaRAsRvLEafEKsi~~ 171 (286)
++.++.+....+.+..++..+...++..+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (880)
T PRK03918 150 VVRQILGLDDYENAYKNLGEVIKEIKRRIER 180 (880)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777776666666655444
No 53
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=72.34 E-value=49 Score=26.96 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=38.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
...+..||+...+.+..-...|.-|+..+.+.+.-..+. ++.-+++++-..+++|+||+..
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~---~~~~qq~r~~~e~~~e~ik~~l 87 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQ---QKREQQLRQQSEERRESIKTAL 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777666666777776655443333333 2333455667788888888876
No 54
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.71 E-value=53 Score=34.10 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023202 184 ENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRL 246 (286)
Q Consensus 184 En~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~ 246 (286)
-.+.+.+++..+..+|+.|.. -|--+.+.++++. ..+|..+..|+++|..|+..+|-
T Consensus 390 k~~k~~kel~~~~E~n~~l~k---nq~vw~~kl~~~~---e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 390 KLKKCQKELKEEREENKKLIK---NQDVWRGKLKELE---EREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455555554433 3334444443332 23356678888888888866663
No 55
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=70.58 E-value=3.7 Score=27.99 Aligned_cols=25 Identities=36% Similarity=0.752 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 58 MDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 58 mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
++.++|+.+|+.||.++..|.+.|.
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~Lg 29 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLLG 29 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 4678999999999999999998875
No 56
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.37 E-value=25 Score=37.13 Aligned_cols=61 Identities=26% Similarity=0.333 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
++.|.+.--++++.|..+|.-||.-|..|.-=-.|.+.+++|...|++-|..-+-++..|-
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666667889999999999999999988888999999999999988877666665553
No 57
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.10 E-value=31 Score=29.54 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=31.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
....+..|+..|++++..|..++..|+--++.-...... ++...++..|++=+.+++++|..|.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-EELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666666665555444433332211 1233444444555555555555555
No 58
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=69.74 E-value=88 Score=30.78 Aligned_cols=80 Identities=23% Similarity=0.216 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 161 ALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTL 240 (286)
Q Consensus 161 vLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~L 240 (286)
-++.+++.+.+-... .......|...+..+...|.++-..+|.-+..=.+.+.+|.+..+|++-.+++..+|-.+.+.+
T Consensus 321 q~~~~~~~~~~e~~~-~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~ 399 (458)
T COG3206 321 QLAELRQQIAAELRQ-ILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQEL 399 (458)
T ss_pred HHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443332 2333444667788888888888888888888888888888888888888888888887777776
Q ss_pred h
Q 023202 241 E 241 (286)
Q Consensus 241 E 241 (286)
.
T Consensus 400 ~ 400 (458)
T COG3206 400 S 400 (458)
T ss_pred H
Confidence 6
No 59
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=69.31 E-value=43 Score=26.03 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 187 MLKEQVEALIQENMILKRAVSIQHERQKEYE----DRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 187 ~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e----~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
.|+..++.|.-.|..|-.+..+.|.+-.++- ..+...-.| ++.-+|+++++.++
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~al-rlal~ys~r~~e~~ 59 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATAL-RLALKYSERCKEAY 59 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHH
Confidence 4788899999999999999988887765543 233445555 77889999999998
No 60
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=69.25 E-value=1e+02 Score=32.64 Aligned_cols=45 Identities=31% Similarity=0.401 Sum_probs=37.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQEL 223 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~ 223 (286)
..+++|...|.+++++..++|..|-+...=|-+|..+++.+.+++
T Consensus 90 ~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~ 134 (617)
T PF15070_consen 90 EHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERL 134 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999999988888888888887654443
No 61
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.23 E-value=1.2e+02 Score=32.66 Aligned_cols=77 Identities=23% Similarity=0.342 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 023202 180 SFHQENKMLKEQVEALIQENMI-------LKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFD 252 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~i-------LKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~ 252 (286)
.+..||..||-.++.+.+++.- ++|=+..-+...++++.+..++..|+.-+..-.+.+..||.-+..-+-|..
T Consensus 433 ~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 433 RLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444333 334445555555566666666656555555555555555554444444444
Q ss_pred hhhc
Q 023202 253 LVLS 256 (286)
Q Consensus 253 ~~~~ 256 (286)
|-+|
T Consensus 513 lE~s 516 (652)
T COG2433 513 LELS 516 (652)
T ss_pred hhhc
Confidence 4443
No 62
>PLN02320 seryl-tRNA synthetase
Probab=68.94 E-value=62 Score=33.52 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=33.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
.-.+.++...++.+++.|..|.+-+-+.+.. ..-..+.+....|...||+-+....++++++|
T Consensus 95 l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~ 157 (502)
T PLN02320 95 VLELYENMLALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEEDLVKLT 157 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666677777777766665555533 11111333344455555555555555555555
No 63
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=68.38 E-value=70 Score=26.79 Aligned_cols=89 Identities=26% Similarity=0.306 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--
Q 023202 151 IDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDR----SQELH-- 224 (286)
Q Consensus 151 ~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~----~~E~~-- 224 (286)
+-.-|.|-.+..|.++.-+..-.+. ...++..+..||++++.+.++...++.-..-.....+..+.. ..|++
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d--~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSD--IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355677777777777766553322 223444555555555555554444332222111111111110 12222
Q ss_pred --HHHHHHHHHHHHHHHHh
Q 023202 225 --HLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 225 --~lkqlv~qyqeq~r~LE 241 (286)
.+.+...||.-.+|.-|
T Consensus 121 k~~~~~~~tq~~~e~rkke 139 (151)
T PF11559_consen 121 KNQLQQRKTQYEHELRKKE 139 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 44456667777777777
No 64
>CHL00098 tsf elongation factor Ts
Probab=68.07 E-value=9.1 Score=34.90 Aligned_cols=41 Identities=27% Similarity=0.350 Sum_probs=29.7
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcCc
Q 023202 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGS 88 (286)
Q Consensus 47 ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L~s 88 (286)
++-.||.. -+-.-.--.+||++||+|+|.||.-|..--+..
T Consensus 4 ~ik~LR~~-Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g~~~ 44 (200)
T CHL00098 4 LVKELRDK-TGAGMMDCKKALQEANGDFEKALESLRQKGLAS 44 (200)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhH
Confidence 45566655 334444568999999999999999998854433
No 65
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=67.46 E-value=95 Score=28.40 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023202 213 QKEYEDRSQELHHLKQLV 230 (286)
Q Consensus 213 ~~e~e~~~~E~~~lkqlv 230 (286)
..+++...+|..+|++++
T Consensus 92 ~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 92 LQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333344555555543
No 66
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.38 E-value=1.2e+02 Score=29.12 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVS 207 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~ 207 (286)
+++|...|.++++.|-+|+.-|.+-..
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555544444433
No 67
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=66.78 E-value=22 Score=30.92 Aligned_cols=65 Identities=25% Similarity=0.406 Sum_probs=45.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccc
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQ 258 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~ 258 (286)
..|.+....|+++++.+.......+..+.. |+.+.- ..|+++|-|..+.-+.|| ||
T Consensus 18 ~QLekqi~~l~~kiek~r~n~~drl~siR~-------ye~Ms~--~~l~~llkqLEkeK~~Le---------------~q 73 (129)
T PF15372_consen 18 DQLEKQIIILREKIEKIRGNPSDRLSSIRR-------YEQMSV--ESLNQLLKQLEKEKRSLE---------------NQ 73 (129)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccHHHHH-------HhhccH--HHHHHHHHHHHHHHHHHH---------------HH
Confidence 346677788888888887777776666655 555533 457778888777777777 66
Q ss_pred hhhHHHHHH
Q 023202 259 VNNYALTMH 267 (286)
Q Consensus 259 ~~NyaL~~h 267 (286)
+.+|+++..
T Consensus 74 lk~~e~rLe 82 (129)
T PF15372_consen 74 LKDYEWRLE 82 (129)
T ss_pred HHHHHHHHH
Confidence 777776643
No 68
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=66.35 E-value=1.8e+02 Score=30.78 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=24.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYE 217 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e 217 (286)
...+.++++.+....+.+..|+..|+.-..-+-.|..+++
T Consensus 187 ~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 187 MEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666667777777666665555555555
No 69
>PHA02562 46 endonuclease subunit; Provisional
Probab=66.34 E-value=1.4e+02 Score=29.49 Aligned_cols=64 Identities=9% Similarity=0.224 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023202 180 SFHQENKMLKEQVEALIQENMILKRAVSIQHERQK-EYEDRSQELHHLKQLVSQYQEQLRTLETS 243 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~-e~e~~~~E~~~lkqlv~qyqeq~r~LE~~ 243 (286)
..++++..++.++..+..+-..+++.+.-+-+..+ ..++...|+..+...+.+++.++..|+..
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~ 242 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDE 242 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665555444433322222 23333445555555555666666666533
No 70
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=64.92 E-value=9 Score=29.44 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=21.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 176 EAAQSFHQENKMLKEQVEALIQENMILKRA 205 (286)
Q Consensus 176 e~~~~~~kEn~~lKeq~~~l~~eN~iLKrA 205 (286)
|..+.++.-+..|.++...|..||.+||.-
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556667777777777777888888754
No 71
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=64.77 E-value=1.4e+02 Score=29.51 Aligned_cols=105 Identities=19% Similarity=0.296 Sum_probs=61.5
Q ss_pred ccCCCChhhHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 128 KVFQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVS 207 (286)
Q Consensus 128 ~~~p~~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~ 207 (286)
..+|-.|.-.-|++-+|..-.-....|-+|+--++|+ ||... -++++++.+...++.+|....-+-.-|-- .
T Consensus 70 t~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~-Ekvlk-----~aIq~i~~~~q~~~~~Lnnvasdea~L~~--K 141 (338)
T KOG3647|consen 70 TDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEV-EKVLK-----SAIQAIQVRLQSSRAQLNNVASDEAALGS--K 141 (338)
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHH-HHHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHH--H
Confidence 4567788888888888877666666665555444443 33333 25566777777788777776655444432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 208 IQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 208 IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
|+ .|..|||--.+.+..|..+-.+|-......|
T Consensus 142 ie-rrk~ElEr~rkRle~LqsiRP~~MdEyE~~E 174 (338)
T KOG3647|consen 142 IE-RRKAELERTRKRLEALQSIRPAHMDEYEDCE 174 (338)
T ss_pred HH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 22 3445666655666666555555544443333
No 72
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.75 E-value=87 Score=26.55 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFD 252 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~ 252 (286)
+..+-..+.+.+-+|..+|--++....-=..-.+++++.++...-+-+++.+=-|++..|+.-+.-+|-||.
T Consensus 42 l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 42 LEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555666655544443333444556666666666667777777888888877777776664
No 73
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=63.60 E-value=12 Score=33.91 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=31.9
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcCcC
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSA 89 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L~sa 89 (286)
.++-.||.. -+-.-.--.+||++|++|+|.||.-|..--+..+
T Consensus 6 ~~ik~LR~~-tga~~~~ck~AL~~~~gd~~~A~~~lr~~g~~~a 48 (198)
T PRK12332 6 KLVKELREK-TGAGMMDCKKALEEANGDMEKAIEWLREKGLAKA 48 (198)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHH
Confidence 456677766 3445555789999999999999999998544333
No 74
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=62.70 E-value=1.4e+02 Score=33.73 Aligned_cols=82 Identities=24% Similarity=0.327 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHH--hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHH--HHHHHH
Q 023202 160 RALEILEKSICAR--ASAEAAQSFHQENKMLKEQVEALIQENMILK----------------RAVSIQHERQ--KEYEDR 219 (286)
Q Consensus 160 RvLEafEKsi~~r--a~ae~~~~~~kEn~~lKeq~~~l~~eN~iLK----------------rAv~IQheR~--~e~e~~ 219 (286)
+.|+.+-++..+. -..++.+-+|.||+.|+.|...+..+-.--| |+.+.-+-|. .-.+.-
T Consensus 298 eeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nv 377 (1265)
T KOG0976|consen 298 EELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENV 377 (1265)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555555554432 1245667788888888887766544322111 2222111111 111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023202 220 SQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 220 ~~E~~~lkqlv~qyqeq~r~LE 241 (286)
..|+|.|+.+-+..||||..|-
T Consensus 378 e~elqsL~~l~aerqeQidelK 399 (1265)
T KOG0976|consen 378 EEELQSLLELQAERQEQIDELK 399 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999999999887
No 75
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=62.69 E-value=1.2e+02 Score=27.24 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHH
Q 023202 259 VNNYALTMHLKQ 270 (286)
Q Consensus 259 ~~NyaL~~hL~q 270 (286)
.|.|+|.-|++.
T Consensus 156 DNI~~l~~~~~~ 167 (188)
T PF03962_consen 156 DNIFSLKSYLKK 167 (188)
T ss_pred hhHHHHHHHHHH
Confidence 888999988886
No 76
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=62.53 E-value=21 Score=33.60 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=13.8
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEAL 195 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l 195 (286)
..++++||+.||+++..+
T Consensus 68 ~~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345788999988887776
No 77
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=61.58 E-value=55 Score=25.49 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=20.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLK 203 (286)
...++++|..|++..+.|..||.-||
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34478888888888888888888887
No 78
>PF02341 RcbX: RbcX protein; InterPro: IPR003435 The RbcX protein has been identified as having a possible chaperonin-like function []. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RubisCO in Anabaena sp. (strain CA / ATCC 33047). RbcX has been shown to possess a chaperonin-like function assisting correct folding of RubisCO in Escherichia coli expression studies and is needed for RubisCO to reach its maximal activity [].; PDB: 2PEM_B 2PEI_L 2PEK_A 2Z46_E 2Z44_A 2PEJ_F 2PEN_D 2PEQ_B 2Z45_A 3Q20_A ....
Probab=60.68 E-value=39 Score=28.65 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=22.6
Q ss_pred cCCCChhhHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 023202 129 VFQLDGPEWVELFVREMMSSSNIDDARARASRALEILEK 167 (286)
Q Consensus 129 ~~p~~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafEK 167 (286)
+-+.||..|++.+++| + +.=|.||+++=|-
T Consensus 48 ~~~~DGd~fl~~L~~e-----~----~~LA~RIM~vR~~ 77 (111)
T PF02341_consen 48 NPLQDGDAFLEALMRE-----N----QELALRIMEVREH 77 (111)
T ss_dssp STCSSHHHHHHHHHCC----------HHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHH-----C----HHHHHHHHHHHHH
Confidence 4567999999999998 1 4458999886443
No 79
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=60.59 E-value=1.5e+02 Score=31.37 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=42.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHh
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRS-----------QELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~-----------~E~~~lkqlv~qyqeq~r~LE 241 (286)
...+.+++..|++++..|..++.-|+..+..+.++...+..+. .|...|+.-.++-.++|+.||
T Consensus 152 ~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 152 KEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447788888888888888888888888887777766655433 333344444445555666666
No 80
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=60.34 E-value=50 Score=29.11 Aligned_cols=71 Identities=27% Similarity=0.345 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 159 SRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLR 238 (286)
Q Consensus 159 sRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r 238 (286)
..-|+.+++.+...... ...+..|+..|++.+..+-.+-.-..+++.+ .+-|+..|.--+....++++
T Consensus 101 ~~~l~~l~~~~~~~~~~--l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~----------l~DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 101 NDELQELEKELSEKERR--LAELEAELAQLEEKIKDLEEELKEKNKANEI----------LQDELQALQLQLNMLEEKLR 168 (194)
T ss_dssp -------------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 33444455544443333 3345555555555555555544444444332 33455555555666677777
Q ss_pred HHh
Q 023202 239 TLE 241 (286)
Q Consensus 239 ~LE 241 (286)
.||
T Consensus 169 ~l~ 171 (194)
T PF08614_consen 169 KLE 171 (194)
T ss_dssp HHH
T ss_pred HHH
Confidence 777
No 81
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=60.25 E-value=12 Score=31.81 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=25.2
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 48 LDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 48 l~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
++-+..-+ +.+..-..+||++|++||-.||..|.+
T Consensus 80 I~lv~~q~-gvs~~~A~~AL~~~~gDl~~AI~~L~~ 114 (115)
T PRK06369 80 IELVAEQT-GVSEEEARKALEEANGDLAEAILKLSS 114 (115)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence 34443333 455666789999999999999998753
No 82
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=60.17 E-value=1.3e+02 Score=27.10 Aligned_cols=57 Identities=26% Similarity=0.388 Sum_probs=38.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+..+..||..|.+-|..+..|+.-|++-+. ++++ -...+..+|.-+...+++|+.|+
T Consensus 50 m~ei~~eN~~L~epL~~a~~e~~eL~k~L~-~y~k------dK~~L~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 50 MAEISQENKRLSEPLKKAEEEVEELRKQLK-NYEK------DKQSLQNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788888888887777777654 2333 23346677777777777777777
No 83
>PLN03025 replication factor C subunit; Provisional
Probab=60.15 E-value=50 Score=30.74 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=42.0
Q ss_pred ccccCCCCCCCCCCCCCCccchHHHHHhhC----CCCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 26 R~Rcssssp~rf~~p~~~~~~ll~~L~~lF----P~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
|.||- .++|.+|.. +.+...|..++ =.++++.++..++.||.|+-.||..|.-...
T Consensus 147 ~SRc~---~i~f~~l~~--~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~ 206 (319)
T PLN03025 147 QSRCA---IVRFSRLSD--QEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHS 206 (319)
T ss_pred HHhhh---cccCCCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 44663 578888633 56677777654 3578999999999999999999998874443
No 84
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=59.75 E-value=1.7e+02 Score=29.81 Aligned_cols=118 Identities=23% Similarity=0.250 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH---hhHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHH
Q 023202 150 NIDDARARASRALEILEKSICAR---ASAEAAQS--FHQENKMLKEQVEALIQENMILKRAV---SIQH-ERQKEYEDRS 220 (286)
Q Consensus 150 d~dDARaRAsRvLEafEKsi~~r---a~ae~~~~--~~kEn~~lKeq~~~l~~eN~iLKrAv---~IQh-eR~~e~e~~~ 220 (286)
-+.+=|+||.|+|+.=||-|..= +..++.+. ..-|...||.+.+-+..|+..|.+-+ .+|. ....++.
T Consensus 236 el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~--- 312 (511)
T PF09787_consen 236 ELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLE--- 312 (511)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 35677889999999999988752 22211110 01245566777777777777777665 3333 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHH---hhhhccchhhHHHHHHHHH
Q 023202 221 QELHHLKQLVSQYQEQLRTL---ETSWRLMTLMF---DLVLSNQVNNYALTMHLKQ 270 (286)
Q Consensus 221 ~E~~~lkqlv~qyqeq~r~L---E~~~~~~~~~~---~~~~~~~~~NyaL~~hL~q 270 (286)
.+...+++.+.+++.++..+ |+-+++..--| +-=+.++.+...++.+-+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke 368 (511)
T PF09787_consen 313 GEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKE 368 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 23333444444444444332 65566555433 3344566666666666554
No 85
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=59.68 E-value=28 Score=27.97 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 194 ALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 194 ~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~ 239 (286)
.|+++|.-||. .+.++..|+..|+.++.+++.+|..
T Consensus 2 ~Li~qNk~L~~----------kL~~K~eEI~rLn~lv~sLR~KLiK 37 (76)
T PF11544_consen 2 ELIKQNKELKK----------KLNDKQEEIDRLNILVGSLRGKLIK 37 (76)
T ss_dssp ----HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666766654 4455666777777777777766644
No 86
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=59.52 E-value=9.1 Score=33.68 Aligned_cols=67 Identities=31% Similarity=0.371 Sum_probs=11.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQ----KEYEDRSQELHHLKQLVSQYQEQLRTLETS 243 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~----~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~ 243 (286)
-.+.+..|...|+.++.+|.+||.-|.--.+-=..++ .+....-.|+.||+-++..|++.+...-++
T Consensus 16 ~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~~~~ 86 (181)
T PF09311_consen 16 HLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIESRTA 86 (181)
T ss_dssp HHHHHHHCCHHHHT---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccccccchh
Confidence 4667888999999999999999999987766544444 233344588999999999999888766543
No 87
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=59.18 E-value=1.3e+02 Score=26.82 Aligned_cols=67 Identities=27% Similarity=0.376 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHH
Q 023202 185 NKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYAL 264 (286)
Q Consensus 185 n~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL 264 (286)
...++.++..|..++.-|+.-+.-.-.+....+.+..|..+ .....+++.|.-|- .+|--|
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~--~~~k~~~~ei~~lk-----------------~~~~ql 182 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ--EEEKKHQEEIDFLK-----------------KQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-----------------HHHHHH
Confidence 34555566666666666665555444443333333333322 23455666666666 666666
Q ss_pred HHHHHH
Q 023202 265 TMHLKQ 270 (286)
Q Consensus 265 ~~hL~q 270 (286)
+-+|++
T Consensus 183 ~~~l~~ 188 (189)
T PF10211_consen 183 KAQLEQ 188 (189)
T ss_pred HHHHhc
Confidence 666653
No 88
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=58.89 E-value=1e+02 Score=27.71 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023202 181 FHQENKMLKEQVEALI---QENMILKRAVS------IQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWR 245 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~---~eN~iLKrAv~------IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~ 245 (286)
+-.+-..|+.+++.+. .+...|+.... ||.+ ..+..+..+|..+|++.+..||--+...=+..|
T Consensus 29 Ll~qa~~l~~~i~sm~~y~eei~~l~~~~~~~~~~~l~~E-n~qi~~Lq~EN~eL~~~leEhq~alelIM~KyR 101 (181)
T PF05769_consen 29 LLSQAEALNKQIESMRQYQEEIQELNELSKNRPRAGLQQE-NRQIRQLQQENRELRQSLEEHQSALELIMSKYR 101 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444332 33344444443 4433 122455567777777777777765555544444
No 89
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=58.70 E-value=47 Score=29.89 Aligned_cols=39 Identities=31% Similarity=0.320 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023202 159 SRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 159 sRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLK 203 (286)
-+.|+.|..... ..+.+.+||..|+++++.|.++|.-|.
T Consensus 86 I~fLq~l~~~~~------~~~~~~~e~~~l~~e~~~l~~~~e~Le 124 (161)
T TIGR02894 86 ISFLQNLKTTNP------SDQALQKENERLKNQNESLQKRNEELE 124 (161)
T ss_pred HHHHHHHHhcch------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666653221 233466777777777777766666553
No 90
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=58.38 E-value=1.5e+02 Score=27.29 Aligned_cols=84 Identities=24% Similarity=0.287 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 023202 180 SFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRS------------QELHHLKQLVSQYQEQLRTLETSWRLM 247 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~------------~E~~~lkqlv~qyqeq~r~LE~~~~~~ 247 (286)
.+++-..-+|+-++.+..---.||..+.=--.|.+..+.+- .=...+.++..+++..+..|.+.||.+
T Consensus 94 dl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~ 173 (207)
T PF05010_consen 94 DLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKE 173 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46777777888888877776777777643333333332221 122344668889999999999999999
Q ss_pred HHHHhhhhccchhhHHHHHHHHHhhh
Q 023202 248 TLMFDLVLSNQVNNYALTMHLKQAEH 273 (286)
Q Consensus 248 ~~~~~~~~~~~~~NyaL~~hL~qa~~ 273 (286)
. ..+.+|.--|.|=+.
T Consensus 174 e----------~~~~SLe~~LeQK~k 189 (207)
T PF05010_consen 174 E----------MKVQSLEESLEQKTK 189 (207)
T ss_pred H----------HHHHHHHHHHHHHHH
Confidence 8 888899888887554
No 91
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=58.17 E-value=1.7e+02 Score=27.84 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 180 SFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
--+.|...+|+++..+..+..-+|+-+.-.....++. ..++..++.-..+++++|..+|
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l---~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEEL---EEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777778777777777777776665444444444 4445555666777777777777
No 92
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=57.93 E-value=8.9 Score=36.80 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=29.1
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcCcC
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSA 89 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L~sa 89 (286)
.++-.||.. -+-.----.+||++|++|+|.||.-|..--+..+
T Consensus 6 ~~IK~LRe~-Tgagm~dCKkAL~e~~gDiekAi~~LRkkG~akA 48 (290)
T TIGR00116 6 QLVKELRER-TGAGMMDCKKALTEANGDFEKAIKNLRESGIAKA 48 (290)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhHH
Confidence 345556554 2222233579999999999999999988544333
No 93
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=57.70 E-value=3.7e+02 Score=32.71 Aligned_cols=70 Identities=27% Similarity=0.280 Sum_probs=48.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQL----VSQYQEQLRTLETSWRLMT 248 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkql----v~qyqeq~r~LE~~~~~~~ 248 (286)
..+......++++++.+-++|.-|+.=+.=--.+..+.+...+|++..+.. +.+.|.+|..+|++++.+.
T Consensus 1473 ~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE 1546 (1930)
T KOG0161|consen 1473 QKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEE 1546 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 445556677778888888888888776665556666666666666665544 3446888888888777665
No 94
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=57.55 E-value=14 Score=31.62 Aligned_cols=26 Identities=46% Similarity=0.736 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 57 DMDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 57 ~mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
+.+..-..+||++|++||-.||-.|.
T Consensus 90 gvs~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 90 NVSKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred CcCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 44555677899999999999998774
No 95
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=57.42 E-value=1.2e+02 Score=27.77 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=12.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMIL 202 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iL 202 (286)
.++++||+.||+++..|..++.-+
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666655555554444433
No 96
>PRK09377 tsf elongation factor Ts; Provisional
Probab=56.59 E-value=9.6 Score=36.57 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=29.5
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcCc
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGS 88 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L~s 88 (286)
.++-.||.. -+-.-.--.+||++|++|+|.||.-|..--+..
T Consensus 7 ~~IK~LR~~-Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G~ak 48 (290)
T PRK09377 7 ALVKELRER-TGAGMMDCKKALTEADGDIEKAIEWLRKKGLAK 48 (290)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhh
Confidence 355666655 223334467999999999999999999844333
No 97
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=56.54 E-value=38 Score=31.88 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAV 206 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv 206 (286)
+.+||..|+.+++.|++|+.-|++.+
T Consensus 227 leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 227 LEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554443
No 98
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=56.37 E-value=72 Score=34.56 Aligned_cols=70 Identities=30% Similarity=0.336 Sum_probs=49.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 140 LFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDR 219 (286)
Q Consensus 140 l~V~EM~sAsd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~ 219 (286)
..|+||. |-+|+--+|..|--+.. |+++.|++.+...+|.+.+ +...+
T Consensus 79 r~~~e~~--------RI~~sVs~EL~ele~kr-------qel~seI~~~n~kiEelk~-----------------~i~~~ 126 (907)
T KOG2264|consen 79 RILREQK--------RILASVSLELTELEVKR-------QELNSEIEEINTKIEELKR-----------------LIPQK 126 (907)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHH-----------------HHHHh
Confidence 4466663 66777777776654332 4567777777666665543 44556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023202 220 SQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 220 ~~E~~~lkqlv~qyqeq~r~LE 241 (286)
++||.+||-.++|.|-|++.|-
T Consensus 127 q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 127 QLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 8899999999999999999886
No 99
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=56.24 E-value=36 Score=32.15 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 023202 193 EALIQENMILKRAVSIQHERQKE-YEDRSQELHHLKQLV 230 (286)
Q Consensus 193 ~~l~~eN~iLKrAv~IQheR~~e-~e~~~~E~~~lkqlv 230 (286)
..+.+||.-||+-+.-.+.+++. +++..+|..+||+++
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666554433222222 222455666666543
No 100
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=56.19 E-value=2.5e+02 Score=29.13 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=31.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYED--------RSQELHHLKQLVSQYQEQLRTLETSWR 245 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~--------~~~E~~~lkqlv~qyqeq~r~LE~~~~ 245 (286)
..+.++...+..+.+.+.++-.-++..+.-...+..+.+. ..++..+|+.-+.+++++++..+..++
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544444444333333333322 223344455555555555555554444
No 101
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=55.72 E-value=2.2e+02 Score=28.19 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Q 023202 149 SNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHER---------QKEYEDR 219 (286)
Q Consensus 149 sd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR---------~~e~e~~ 219 (286)
.+++++|+==..-++++|++..+..+.++- -+-...++..-+.||+++..+-+. ..|.++-
T Consensus 225 ~~v~s~re~~d~W~~~ae~~~~e~~~S~ef----------ak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~ 294 (320)
T TIGR01834 225 KPVKTAKALYDLWVIAAEEAYAEVFASEEN----------AKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEA 294 (320)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 445555555455556666555554443321 112344555555566655544443 2455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023202 220 SQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 220 ~~E~~~lkqlv~qyqeq~r~LE 241 (286)
.+.|+.|+.-|.....+|++||
T Consensus 295 ~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 295 HQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666677666
No 102
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.50 E-value=2.3e+02 Score=30.65 Aligned_cols=113 Identities=23% Similarity=0.244 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCChHHHHH---HHHHHHHHHHHHHHHHhhHH----------HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 138 VELFVREMMSSSNIDDARA---RASRALEILEKSICARASAE----------AAQSFHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 138 VEl~V~EM~sAsd~dDARa---RAsRvLEafEKsi~~ra~ae----------~~~~~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
||....+|.-=.|..++++ |..=+-|+++|.+.++-..+ ......++.+.+.+++++|..||..||+
T Consensus 364 vEr~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~~~p~e~~~~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~ 443 (652)
T COG2433 364 VERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKR 443 (652)
T ss_pred HHHhcccccchhhHHHHHHHeecCCcHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444433344455554 33444555555554433111 1133566778888888899999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhhhHHHHHHhh
Q 023202 205 AVSIQHERQKEYEDRSQELHHLKQ----------LVSQYQEQLRTLETSWRLMTLMFDL 253 (286)
Q Consensus 205 Av~IQheR~~e~e~~~~E~~~lkq----------lv~qyqeq~r~LE~~~~~~~~~~~~ 253 (286)
-+-=+- ++.+....++..++. -+.+-++.|.+||..++..+-+.|-
T Consensus 444 ~~ee~k---~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 444 ELEELK---REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664332 233333333333322 2344567777888777777665554
No 103
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=55.31 E-value=23 Score=28.26 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=22.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSI 208 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~I 208 (286)
+.+++||..||+.++.|..|-.-+||-+.|
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qI 32 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQI 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 457889999998888877666666665544
No 104
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=54.89 E-value=1.6e+02 Score=26.32 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 182 HQENKMLKEQVEALIQENMILKRAV 206 (286)
Q Consensus 182 ~kEn~~lKeq~~~l~~eN~iLKrAv 206 (286)
.+++...|+++..+..++.-.+..+
T Consensus 83 ~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 83 RKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333
No 105
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=54.66 E-value=1.3e+02 Score=28.92 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHHHHhhhcCCCCCCCCCCCC
Q 023202 227 KQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAEHSNSIPGRFHPDVF 286 (286)
Q Consensus 227 kqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL~qa~~~~~~~g~~~PDvf 286 (286)
+.++..||++||..|...+..- ...|....-=.+.....-..|+|-.|.|
T Consensus 87 ~~~~~~~q~~vRq~E~~~~~~L----------l~Ly~f~~~~~~~~~l~~~~~~w~~DLF 136 (292)
T PF11981_consen 87 AELVQRLQDAVRQREQQCQQAL----------LALYRFRRDDVQEPELPLLEGRWGQDLF 136 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHhCcccccccccccchhccccccCCC
Confidence 5689999999999995544332 2333322211122222345567767766
No 106
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=54.48 E-value=2.6e+02 Score=28.80 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHH
Q 023202 151 IDDARARASRALE 163 (286)
Q Consensus 151 ~dDARaRAsRvLE 163 (286)
+.+|+..|..+++
T Consensus 27 l~~Ae~eAe~i~k 39 (514)
T TIGR03319 27 LGSAEELAKRIIE 39 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 3456666666553
No 107
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=54.43 E-value=74 Score=27.63 Aligned_cols=19 Identities=47% Similarity=0.569 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023202 189 KEQVEALIQENMILKRAVS 207 (286)
Q Consensus 189 Keq~~~l~~eN~iLKrAv~ 207 (286)
.|.++.+..||..||-|+.
T Consensus 84 dETI~~lk~EN~fLKeAl~ 102 (126)
T PF13118_consen 84 DETIEALKNENRFLKEALY 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3458899999999999874
No 108
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=54.27 E-value=1e+02 Score=24.06 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 023202 221 QELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 221 ~E~~~lkqlv~qyqeq~r~LE 241 (286)
-|+..|+.-+.+|++.|+.++
T Consensus 50 ve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 50 VEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666
No 109
>PRK11637 AmiB activator; Provisional
Probab=54.03 E-value=2.2e+02 Score=27.84 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023202 216 YEDRSQELHHLKQLVSQYQEQLRTLETSW 244 (286)
Q Consensus 216 ~e~~~~E~~~lkqlv~qyqeq~r~LE~~~ 244 (286)
....++++..+..-+.+.+++|.+++..+
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555555555555555555555443
No 110
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=53.90 E-value=1.6e+02 Score=29.15 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=31.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYED 218 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~ 218 (286)
..+++++.+...|++++.+.+--.--...+.-|-.|.++...
T Consensus 12 efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~ 53 (330)
T PF07851_consen 12 EFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKK 53 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888877777777778888888777743
No 111
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=53.74 E-value=1.2e+02 Score=29.74 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHHHHhhh
Q 023202 228 QLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAEH 273 (286)
Q Consensus 228 qlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL~qa~~ 273 (286)
-|++..+|++|.|| -++++|||-- +.||.=+.|.+.+-.
T Consensus 116 ~l~seleeKkrkie----eeR~smDlts---~~~e~~~l~~rk~rr 154 (291)
T KOG4466|consen 116 NLISELEEKKRKIE----EERLSMDLTS---DSMESKPLYTRKLRR 154 (291)
T ss_pred HHHHHHHHHHHHHH----HHHhhhhhcc---cccccchHHhhhccc
Confidence 47899999999999 7888999743 237888888887664
No 112
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=53.12 E-value=2.2e+02 Score=27.55 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhh
Q 023202 182 HQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNN 261 (286)
Q Consensus 182 ~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~N 261 (286)
..|...+|+++..+..++...++=+....++.++.. ..+...+.-..+++++|+.+|.-...-+ -.-...+++
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~---~~I~~~~~~k~e~~~~I~~ae~~~~~~r----~~t~~Ei~~ 275 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELE---SKIEDLTNKKSELNTEIAEAEKKLEQCR----GFTFKEIEK 275 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCHHHHHH
Confidence 447788888888888888888877766666665554 4455556677889999999984221100 011112556
Q ss_pred HHHHHHHHHhhhcC
Q 023202 262 YALTMHLKQAEHSN 275 (286)
Q Consensus 262 yaL~~hL~qa~~~~ 275 (286)
+-.+++.=|..++=
T Consensus 276 Lk~~~~~Le~l~g~ 289 (312)
T smart00787 276 LKEQLKLLQSLTGW 289 (312)
T ss_pred HHHHHHHHHHHhCC
Confidence 66666666665543
No 113
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=52.79 E-value=3.1e+02 Score=29.73 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023202 185 NKMLKEQVEALIQENMILKRAVSIQHERQKEYED--RSQELHHLKQLVSQYQEQLRTLETSWRL 246 (286)
Q Consensus 185 n~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~--~~~E~~~lkqlv~qyqeq~r~LE~~~~~ 246 (286)
....++.++.+.+|..-+|+.+.-+-++.++..+ ..+...+..+++.+.+++++.+...||.
T Consensus 527 ~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 527 LEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444333333222211 1122233345666666666666555553
No 114
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=52.69 E-value=1.9e+02 Score=33.56 Aligned_cols=61 Identities=30% Similarity=0.427 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q 023202 181 FHQENKMLKEQVEALIQENMILKR-AVSIQHERQKEYEDRS----QELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKr-Av~IQheR~~e~e~~~----~E~~~lkqlv~qyqeq~r~LE 241 (286)
..++++.|.+.++.+..+-..|+| =-+|-...+++++++. .+++.|+..|.+|++++.-++
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q 528 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQ 528 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666664 2222222344444332 445566667777777777666
No 115
>KOG3096 consensus Spliceosome-associated coiled-coil protein [Function unknown]
Probab=52.64 E-value=1.5e+02 Score=28.15 Aligned_cols=101 Identities=25% Similarity=0.393 Sum_probs=59.3
Q ss_pred CCChhhHHHHHHHHHhcCCChHHHHHHHHHH--HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 131 QLDGPEWVELFVREMMSSSNIDDARARASRA--LEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSI 208 (286)
Q Consensus 131 p~~g~eWVEl~V~EM~sAsd~dDARaRAsRv--LEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~I 208 (286)
-.|.+-|-|-+-+-|..- .--..|. ||..+| -+++ .+.+-|+.|--+++.+.+|-.-+|..+--
T Consensus 91 r~d~~aW~e~l~ns~aql------Ehq~~r~~NLeLM~k-----~g~e---aw~~~ne~le~~l~~aqkelq~~kk~iq~ 156 (225)
T KOG3096|consen 91 RNDDAAWQESLLNSMAQL------EHQLVRNENLELMSK-----HGEE---AWKQYNEVLEVMLTHAQKELQKTKKLIQD 156 (225)
T ss_pred cchHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHH-----hhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778988887655321 1112222 333333 2232 36677777777777777776666655433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHH
Q 023202 209 QHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHL 268 (286)
Q Consensus 209 QheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL 268 (286)
=| ++..+. |+ +.-++|+.||..|+.+- ++||-..+--
T Consensus 157 vn----------~~RK~~-Q~--~ag~rL~~le~~wvqLv----------~knyeie~a~ 193 (225)
T KOG3096|consen 157 VN----------RQRKHA-QL--TAGERLRELEQKWVQLV----------SKNYEIEVAC 193 (225)
T ss_pred Hh----------HHHHHH-HH--HHHHHHHHHHHHHHHHH----------HhhHHHHHHH
Confidence 33 333221 22 33468999999999988 8999776543
No 116
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=52.14 E-value=1.4e+02 Score=29.60 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 023202 219 RSQELHHLKQLVSQYQEQLRTLET 242 (286)
Q Consensus 219 ~~~E~~~lkqlv~qyqeq~r~LE~ 242 (286)
..+...+|++.+.++++++.+|+.
T Consensus 380 l~~~~~~l~~~~~~l~~~~~~l~~ 403 (451)
T PF03961_consen 380 LKEKKKELKEELKELKEELKELKE 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555553
No 117
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=51.84 E-value=84 Score=28.80 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 188 LKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQL 237 (286)
Q Consensus 188 lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~ 237 (286)
+.+++..|+.|--.|.++|+-.|.|+.+. -+-.-|.+.+|||..-
T Consensus 82 meK~~~~LL~EELkLqe~~A~e~~~~~~~-----~lleAkk~asqYQkEA 126 (176)
T PF06364_consen 82 MEKNFVDLLSEELKLQEAVANENQRRADM-----ALLEAKKMASQYQKEA 126 (176)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 34456668888888999999888876654 3556688999999553
No 118
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.28 E-value=2.4e+02 Score=27.39 Aligned_cols=151 Identities=26% Similarity=0.339 Sum_probs=79.5
Q ss_pred CCHHHHHHHHhhhhcCcCCCCCCCCC-CCcch-hhhhhccccccCCCCCCCCCCCCccccCCCChhhHHHHHHHHHhcCC
Q 023202 72 DDLDSAIRSLNELRLGSADNNLGSVA-GKSDL-AADANAQGVATTNGEVPSPDDPSASKVFQLDGPEWVELFVREMMSSS 149 (286)
Q Consensus 72 ndlDsAIksL~~L~L~sa~~~~~~~~-~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~~g~eWVEl~V~EM~sAs 149 (286)
.|...--|.|..+.||+.-++.-+.- +.+.+ .+...++|. +-.-. ++| ....|-+..+.|-.|+..--
T Consensus 17 sDvE~iSkalQr~aLG~eYnITisSIiPTT~~eIA~raaeGA-DlvlI--ATD-------aD~~GReLA~kf~eeLrg~V 86 (290)
T COG4026 17 SDVEVISKALQRLALGSEYNITISSIIPTTNVEIAKRAAEGA-DLVLI--ATD-------ADRVGRELAEKFFEELRGMV 86 (290)
T ss_pred chHHHHHHHHHHhhhcccceeEEEeeccCchHHHHHHhhccC-CEEEE--eec-------CcchhHHHHHHHHHHHHHhh
Confidence 45666666777788888655421111 11111 133333332 00000 001 12348888888876654211
Q ss_pred ChHHHHHHHHHH------------HHHHHHHHHH---HhhHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 150 NIDDARARASRA------------LEILEKSICA---RASAEAAQ------SFHQENKMLKEQVEALIQENMILKRAVSI 208 (286)
Q Consensus 150 d~dDARaRAsRv------------LEafEKsi~~---ra~ae~~~------~~~kEn~~lKeq~~~l~~eN~iLKrAv~I 208 (286)
. +--|+ ++..+|-+.. ||+-...+ .++.-...+|++++.++.||.-|..-.
T Consensus 87 G------hiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~el-- 158 (290)
T COG4026 87 G------HIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKEL-- 158 (290)
T ss_pred h------hhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 0 11111 3344443333 45544444 566777889999999999987554322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 209 QHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 209 QheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
.+-+.+|++-+.++..|.--.++..|.++.|+
T Consensus 159 -eele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 159 -EELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 23344666666666666666777777777766
No 119
>PLN02939 transferase, transferring glycosyl groups
Probab=51.20 E-value=1.9e+02 Score=32.66 Aligned_cols=54 Identities=26% Similarity=0.407 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 188 LKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 188 lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
|-+++..|..||++||..+..-..-..+..+-..-+-.|..-.+-.+.-||.||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELE 277 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999987655544444443332223333333333444444444
No 120
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=51.17 E-value=27 Score=26.53 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=29.8
Q ss_pred hCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 54 IFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 54 lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
.-=+|-.+--++.||++|=|++.|++.+.+|.-
T Consensus 21 ~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~lk~ 53 (63)
T smart00804 21 AQTGMNAEYSQMCLEDNNWDYERALKNFTELKS 53 (63)
T ss_pred HHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 346899999999999999999999999999874
No 121
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=51.05 E-value=1.4e+02 Score=26.61 Aligned_cols=60 Identities=27% Similarity=0.313 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 180 SFHQENKMLKEQVEALIQENMILKRAVS-----IQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~iLKrAv~-----IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~ 239 (286)
.+..++..|+...+.|..+-.-|+.=.. ..+.++.+......|+.-||+--.|+..+|+.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555444444444443322111 12222222333345666666666666655543
No 122
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=50.60 E-value=1.5e+02 Score=24.72 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 023202 223 LHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 223 ~~~lkqlv~qyqeq~r~LE 241 (286)
...++.+..+|++..+.+.
T Consensus 68 ~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 68 YEELKELESEYQEKEQQQD 86 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555556666655555
No 123
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=49.98 E-value=35 Score=25.12 Aligned_cols=22 Identities=41% Similarity=0.375 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023202 187 MLKEQVEALIQENMILKRAVSI 208 (286)
Q Consensus 187 ~lKeq~~~l~~eN~iLKrAv~I 208 (286)
.||+|++.|..+-.+|..+|++
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555554443
No 124
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=49.86 E-value=3.3e+02 Score=29.92 Aligned_cols=92 Identities=24% Similarity=0.231 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 023202 159 SRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVS----QYQ 234 (286)
Q Consensus 159 sRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~----qyq 234 (286)
+++|..=++.|..-... ......|...|+..|+.+-+||.-||-=|.. .+||++-|+.|...=.+.+. |+.
T Consensus 112 ~~~l~~~~~~i~~l~~~--~~~~e~~~~~l~~~l~~~eken~~Lkye~~~---~~keleir~~E~~~~~~~ae~a~kqhl 186 (769)
T PF05911_consen 112 SKALQEKEKLIAELSEE--KSQAEAEIEDLMARLESTEKENSSLKYELHV---LSKELEIRNEEREYSRRAAEAASKQHL 186 (769)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45677777777663322 1223457788999999999999999987754 46677766666543333322 222
Q ss_pred ---HHHHHHhhhhhHHHHHHhhhh
Q 023202 235 ---EQLRTLETSWRLMTLMFDLVL 255 (286)
Q Consensus 235 ---eq~r~LE~~~~~~~~~~~~~~ 255 (286)
.+|-.||+--||...|.-=-|
T Consensus 187 e~vkkiakLEaEC~rLr~l~rk~l 210 (769)
T PF05911_consen 187 ESVKKIAKLEAECQRLRALVRKKL 210 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 457789998888887765443
No 125
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=49.56 E-value=1.6e+02 Score=27.24 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhhH
Q 023202 162 LEILEKSICARASA 175 (286)
Q Consensus 162 LEafEKsi~~ra~a 175 (286)
|-.|++.|.++-..
T Consensus 103 l~iF~~eI~~~l~~ 116 (301)
T PF14362_consen 103 LKIFEKEIDQKLDE 116 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 56788887776554
No 126
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=49.40 E-value=29 Score=36.85 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 160 RALEILEKSICARASAEAAQSFHQEN-KMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLR 238 (286)
Q Consensus 160 RvLEafEKsi~~ra~ae~~~~~~kEn-~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r 238 (286)
.||.-..+.|..|-+|.+...-+||. .-|+-.|.+|++||.+||+-=+---.|..+++-.++++. +.+=-...|+++|
T Consensus 278 kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k-vpsp~~~~qKk~R 356 (655)
T KOG4343|consen 278 KVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK-VPSPKGRNQKKKR 356 (655)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc-cCCCcccccccch
Confidence 36777778899998887777777776 458888889999999998876666666666654444431 1122233466666
Q ss_pred HHhhh
Q 023202 239 TLETS 243 (286)
Q Consensus 239 ~LE~~ 243 (286)
..=+-
T Consensus 357 kvvai 361 (655)
T KOG4343|consen 357 KVVAI 361 (655)
T ss_pred hhhhH
Confidence 65533
No 127
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=49.37 E-value=1.1e+02 Score=27.96 Aligned_cols=50 Identities=28% Similarity=0.308 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 149 SNIDDARARASRALEILEKSICAR-------ASAEAAQSFHQENKMLKEQVEALIQENMILKRA 205 (286)
Q Consensus 149 sd~dDARaRAsRvLEafEKsi~~r-------a~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrA 205 (286)
+|+.|=- -||.+|||.+.+. .-..++..| ...+|+||-.+|.|-.-||..
T Consensus 101 SDItELD----VvL~~FEk~~~eYkq~ieS~~cr~AI~~F---~~~~keqL~~~i~evq~lK~l 157 (175)
T PF13097_consen 101 SDITELD----VVLSAFEKTALEYKQSIESKICRKAINKF---YSNFKEQLIEMIKEVQELKNL 157 (175)
T ss_pred ccchHHH----HHHHHHHHHHHHHHHhhccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3665543 5899999988763 222233333 356778888888877777654
No 128
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.93 E-value=1.9e+02 Score=25.49 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 183 QENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQ 221 (286)
Q Consensus 183 kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~ 221 (286)
.|.+....-++.+..|...|.=.+...-+|...++.-++
T Consensus 137 ~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 137 EELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444433333
No 129
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=48.69 E-value=96 Score=30.55 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=24.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQ 209 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQ 209 (286)
-..+..|.++|++.+..+..+|.+|+.-++-|
T Consensus 81 Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 81 NKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 34477788888888888888888888766554
No 130
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=48.22 E-value=1.6e+02 Score=24.59 Aligned_cols=62 Identities=21% Similarity=0.364 Sum_probs=44.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
....+..|+..|+..+++|..++.-++|-+....++...... ++..+...+-++.+++..|-
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~---~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK---QLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345566688888888999999999999988888887777644 34444555666666666665
No 131
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=47.62 E-value=1.3e+02 Score=23.32 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 023202 180 SFHQENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~iLK 203 (286)
.++.||..|++++..+..|+.-|+
T Consensus 18 ~L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 18 RLKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777776664
No 132
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.62 E-value=77 Score=25.05 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=31.2
Q ss_pred HHHHHHHHHH---HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 162 LEILEKSICA---RASAEAAQSFHQENKMLKEQVEALIQENMILKRAV 206 (286)
Q Consensus 162 LEafEKsi~~---ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv 206 (286)
|..||+-+-. +..+.-.+.+..++..||.+...+..+|..|+.-+
T Consensus 51 L~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 51 LQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444443322 35555566788888999999999999999887643
No 133
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=47.57 E-value=2.9e+02 Score=29.21 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=22.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 176 EAAQSFHQENKMLKEQVEALIQENMILKRAV 206 (286)
Q Consensus 176 e~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv 206 (286)
+....++.++..|...+..|.+++.+|..-+
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l 533 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESEL 533 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577788888888888888888777444
No 134
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=47.43 E-value=69 Score=26.64 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=19.3
Q ss_pred ChhhHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 023202 133 DGPEWVELFVREMMSSSNIDDARARASRALEILE 166 (286)
Q Consensus 133 ~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafE 166 (286)
.|.++++-||++ .-...+++|..+--+++...
T Consensus 23 k~~k~~~~LVkk--Ge~~~ee~k~~~~e~~~~~~ 54 (118)
T TIGR01837 23 EGSKFFNRLVKE--GELAEKRGQKRFDESVDAAR 54 (118)
T ss_pred HHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHH
Confidence 356677777765 34445666666666665555
No 135
>PRK09039 hypothetical protein; Validated
Probab=47.18 E-value=2.8e+02 Score=26.97 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 184 ENKMLKEQVEALIQENMILKRAVSIQHERQKEY 216 (286)
Q Consensus 184 En~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~ 216 (286)
+...|+.|+++|..+..-|.-++....+|.++.
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~ 170 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRES 170 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555444444433
No 136
>smart00338 BRLZ basic region leucin zipper.
Probab=46.87 E-value=1e+02 Score=22.48 Aligned_cols=19 Identities=42% Similarity=0.380 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023202 185 NKMLKEQVEALIQENMILK 203 (286)
Q Consensus 185 n~~lKeq~~~l~~eN~iLK 203 (286)
...|..++..|..+|.-|+
T Consensus 28 ~~~Le~~~~~L~~en~~L~ 46 (65)
T smart00338 28 IEELERKVEQLEAENERLK 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444
No 137
>PRK00106 hypothetical protein; Provisional
Probab=46.77 E-value=3.7e+02 Score=28.24 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 023202 152 DDARARASRALE 163 (286)
Q Consensus 152 dDARaRAsRvLE 163 (286)
.+|++.|..+++
T Consensus 49 eeAe~eAe~I~k 60 (535)
T PRK00106 49 GKAERDAEHIKK 60 (535)
T ss_pred HHHHHHHHHHHH
Confidence 466777766553
No 138
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=46.60 E-value=4.2e+02 Score=30.43 Aligned_cols=55 Identities=24% Similarity=0.392 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 183 QENKMLKEQVEALIQ-ENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 183 kEn~~lKeq~~~l~~-eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+|++.+.+++..|-. .|.+...+..+|+++... ..+..+|+.-+.+|+++|+.|.
T Consensus 408 ~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i----~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 408 KEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI----EGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433 244555566666665332 2345666777899999999998
No 139
>PHA02562 46 endonuclease subunit; Provisional
Probab=46.59 E-value=2.7e+02 Score=27.49 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 023202 151 IDDARARASRALEILEKSIC 170 (286)
Q Consensus 151 ~dDARaRAsRvLEafEKsi~ 170 (286)
+.++...+..-++-+++.+.
T Consensus 260 l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 260 LNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777754
No 140
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=45.63 E-value=2.1e+02 Score=24.99 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHhh
Q 023202 260 NNYALTMHLKQAE 272 (286)
Q Consensus 260 ~NyaL~~hL~qa~ 272 (286)
-||||...|..|.
T Consensus 83 ~~~ai~~al~~ak 95 (155)
T PF06810_consen 83 KDSAIKSALKGAK 95 (155)
T ss_pred HHHHHHHHHHHcC
Confidence 5778887777654
No 141
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=45.59 E-value=26 Score=30.27 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 59 DNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 59 D~q~le~aLe~cGndlDsAIksL~ 82 (286)
+..=..+||++||.||-.||=+|.
T Consensus 98 sreeA~kAL~e~~GDlaeAIm~L~ 121 (122)
T COG1308 98 SREEAIKALEEAGGDLAEAIMKLT 121 (122)
T ss_pred CHHHHHHHHHHcCCcHHHHHHHhc
Confidence 344467899999999999998874
No 142
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=45.57 E-value=2e+02 Score=32.48 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=43.4
Q ss_pred HhhHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Q 023202 172 RASAEAAQSFHQENKMLKEQV------EALIQENMILKRAVSIQHERQK-----------EYEDRSQELHHLKQLVSQYQ 234 (286)
Q Consensus 172 ra~ae~~~~~~kEn~~lKeq~------~~l~~eN~iLKrAv~IQheR~~-----------e~e~~~~E~~~lkqlv~qyq 234 (286)
|+..++.++-.-|-.-|++-+ .++.+|-.|++|-|...-+-.+ -+..+.-|++.|...++.||
T Consensus 54 rserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q 133 (1265)
T KOG0976|consen 54 RSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQ 133 (1265)
T ss_pred HhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544433333333322 3456666777776654333222 23344567778888999999
Q ss_pred HHHHHHhhhh
Q 023202 235 EQLRTLETSW 244 (286)
Q Consensus 235 eq~r~LE~~~ 244 (286)
+++|.-|+.+
T Consensus 134 ~d~ke~etel 143 (1265)
T KOG0976|consen 134 DDKKENEIEI 143 (1265)
T ss_pred HHHHHHHHHH
Confidence 9999887544
No 143
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=45.34 E-value=2e+02 Score=26.25 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 215 EYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 215 e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+++++..|| |.+=+=|.|||-.||
T Consensus 138 qLe~ke~el---~~~d~fykeql~~le 161 (187)
T PF05300_consen 138 QLEEKEAEL---KKQDAFYKEQLARLE 161 (187)
T ss_pred HHHhhHHHH---HHHHHHHHHHHHHHH
Confidence 344555555 556778999999999
No 144
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.16 E-value=1.2e+02 Score=31.53 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
.|...+.|+++++.|.+|..++++
T Consensus 74 qQ~kasELEKqLaaLrqElq~~sa 97 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNK 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566777788887655555544
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=44.08 E-value=4.1e+02 Score=27.96 Aligned_cols=76 Identities=25% Similarity=0.273 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 159 SRALEILEKSICARASA--EAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQ 236 (286)
Q Consensus 159 sRvLEafEKsi~~ra~a--e~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq 236 (286)
.-.+++..|++..+... .-....++|.+.+||.-..|++.-.+.+.=+.-+.+|.++.- .....-+...|||
T Consensus 370 ~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~------~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 370 SSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEAL------GSKDEKITDLQEQ 443 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 34455555555554432 112445667777776666666666666666666666666552 2222235566677
Q ss_pred HHHH
Q 023202 237 LRTL 240 (286)
Q Consensus 237 ~r~L 240 (286)
||.|
T Consensus 444 lrDl 447 (493)
T KOG0804|consen 444 LRDL 447 (493)
T ss_pred HHhH
Confidence 7654
No 146
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=43.91 E-value=1.9e+02 Score=24.80 Aligned_cols=35 Identities=31% Similarity=0.542 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 197 QENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 197 ~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
++..+|..+-.+|..| +..+|++..||=+-|..||
T Consensus 75 qqQK~~qq~r~~q~Qr----------lk~iK~l~eqflK~le~le 109 (130)
T PF04803_consen 75 QQQKLFQQARIVQNQR----------LKAIKELHEQFLKSLEDLE 109 (130)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 4445565555555555 7777999999999999999
No 147
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=43.71 E-value=57 Score=32.22 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=14.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEALIQEN 199 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN 199 (286)
..++++||+.||+++..|..++
T Consensus 59 y~~L~~EN~~Lk~Ena~L~~~l 80 (337)
T PRK14872 59 ALVLETENFLLKERIALLEERL 80 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777776666665444
No 148
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=43.14 E-value=3.9e+02 Score=27.52 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 023202 151 IDDARARASRALEILEKSICA 171 (286)
Q Consensus 151 ~dDARaRAsRvLEafEKsi~~ 171 (286)
+.+.+.|=.+..+.+++....
T Consensus 80 l~~~~~~l~~~~~~l~~~~~~ 100 (779)
T PRK11091 80 LEESRQRLSRLVAKLEEMRER 100 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554443
No 149
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=43.08 E-value=40 Score=28.93 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=23.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
....+..|...||+++..|+.||..|.=
T Consensus 16 ~l~~l~~el~~lK~~l~~lvEEN~~L~l 43 (114)
T COG4467 16 QLGVLLAELGGLKQHLGSLVEENTALRL 43 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 3456888999999999999999998853
No 150
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=42.89 E-value=3.4e+02 Score=26.71 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=14.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 62 ILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 62 ~le~aLe~cGndlDsAIksL~~L~L 86 (286)
.|++=+.+-...|+.|=+.|.+++.
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666543
No 151
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.82 E-value=1.5e+02 Score=24.14 Aligned_cols=51 Identities=20% Similarity=0.422 Sum_probs=40.5
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccch
Q 023202 209 QHERQKEYEDR------SQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQV 259 (286)
Q Consensus 209 QheR~~e~e~~------~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~ 259 (286)
+..|....|.+ .++++.|+-.++.-...+++|++.++-++-.-||.|-|-+
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~~l 103 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLENEL 103 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555544 3788999999999999999999999999888888876654
No 152
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.71 E-value=3.7e+02 Score=31.31 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhhhhHHH
Q 023202 229 LVSQYQEQLRTLETSWRLMT 248 (286)
Q Consensus 229 lv~qyqeq~r~LE~~~~~~~ 248 (286)
=|.+..+||..|++.++.++
T Consensus 908 kv~~~~~~~~~l~~~i~k~~ 927 (1293)
T KOG0996|consen 908 KVEKINEQLDKLEADIAKLT 927 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 34455566666666666666
No 153
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=42.37 E-value=5.4e+02 Score=28.89 Aligned_cols=6 Identities=33% Similarity=1.038 Sum_probs=3.4
Q ss_pred CCCCCC
Q 023202 277 IPGRFH 282 (286)
Q Consensus 277 ~~g~~~ 282 (286)
+||-+.
T Consensus 514 ~~Gv~G 519 (1163)
T COG1196 514 LPGVYG 519 (1163)
T ss_pred CCCccc
Confidence 666554
No 154
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=42.26 E-value=2.3e+02 Score=28.11 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023202 220 SQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 220 ~~E~~~lkqlv~qyqeq~r~LE 241 (286)
...++.+++...++.+++..|+
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~ 395 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELK 395 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666655
No 155
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.98 E-value=4.1e+02 Score=28.70 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHHHHhh
Q 023202 219 RSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAE 272 (286)
Q Consensus 219 ~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL~qa~ 272 (286)
...|+.+|+.-+.+-+|+++.||...+-+. ++ +--++...-.|-..|.-.+
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~~~~~lr-~~--~~e~~~~~e~L~~aL~amq 600 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELESELQELR-KY--EKESEKDTEVLMSALSAMQ 600 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HhhhhhhHHHHHHHHHHHH
Confidence 356888888888888999999996542111 00 0123344556666665444
No 156
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=41.59 E-value=1.5e+02 Score=27.53 Aligned_cols=60 Identities=25% Similarity=0.366 Sum_probs=34.5
Q ss_pred hHHHHHHHH---HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 151 IDDARARAS---RALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHE 211 (286)
Q Consensus 151 ~dDARaRAs---RvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQhe 211 (286)
+||.|..+- |=-+-|-.-...--.- .....++..+.|....+.|++||..||.....--+
T Consensus 81 LDddRqKgrklarEWQrFGryta~vmr~-eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDe 143 (195)
T PF10226_consen 81 LDDDRQKGRKLAREWQRFGRYTASVMRQ-EVAQYQQKLKELEDKQEELIRENLELKELCLYLDE 143 (195)
T ss_pred cchhHHHhHHHhHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 577777554 4455565544432222 23335666666666677777777777766554433
No 157
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=41.29 E-value=5.8e+02 Score=31.13 Aligned_cols=87 Identities=20% Similarity=0.341 Sum_probs=61.7
Q ss_pred CCChhhHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 131 QLDGPEWVELFVREMMS-SSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQ 209 (286)
Q Consensus 131 p~~g~eWVEl~V~EM~s-Asd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQ 209 (286)
.+.-.+|--.|..+... ...++++|.+...=|+.++..+..-... ...+.+=...|+..++.+.-+..-...+++-.
T Consensus 1356 ~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~--~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~l 1433 (1930)
T KOG0161|consen 1356 NAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAK--NASLEKAKNRLQQELEDLQLDLERSRAAVAAL 1433 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34577898888888776 8889999999999999999988764443 22344444555666666666666666677777
Q ss_pred HHHHHHHHHH
Q 023202 210 HERQKEYEDR 219 (286)
Q Consensus 210 heR~~e~e~~ 219 (286)
...++-++..
T Consensus 1434 e~k~k~f~k~ 1443 (1930)
T KOG0161|consen 1434 EKKQKRFEKL 1443 (1930)
T ss_pred HHHHHHHHHH
Confidence 7777666544
No 158
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.26 E-value=3.1e+02 Score=29.59 Aligned_cols=62 Identities=31% Similarity=0.342 Sum_probs=41.3
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023202 171 ARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLET 242 (286)
Q Consensus 171 ~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~ 242 (286)
+|-.-|.+.++.+|++-|||++..|.. -|+-+-+ -+++| ..+-.+|+......+..|++||-
T Consensus 326 erE~~EeIe~~~ke~kdLkEkv~~lq~---~l~eke~----sl~dl---kehassLas~glk~ds~Lk~leI 387 (654)
T KOG4809|consen 326 ERERLEEIESFRKENKDLKEKVNALQA---ELTEKES----SLIDL---KEHASSLASAGLKRDSKLKSLEI 387 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHH---HHHHHHHHHHhhhhhhhhhHHHH
Confidence 345567778888899999998887765 3444433 33444 33556667777777777777773
No 159
>PHA02067 hypothetical protein
Probab=41.02 E-value=83 Score=29.73 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhhhhHHH
Q 023202 229 LVSQYQEQLRTLETSWRLMT 248 (286)
Q Consensus 229 lv~qyqeq~r~LE~~~~~~~ 248 (286)
|-..|+.+|..|++.+++..
T Consensus 81 L~~aYq~RIaELq~~~~L~~ 100 (221)
T PHA02067 81 LKDLMRDRIIELEIIAELEG 100 (221)
T ss_pred HHHHHHHHHHHHHHhhhhcc
Confidence 56899999999998888875
No 160
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=40.83 E-value=3.4e+02 Score=26.15 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=50.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRL 246 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~ 246 (286)
.-..|.+|..-+-..+..|-+||..+|+-+---+. ..-++..|...+..-+..++.|+..||.-.|-
T Consensus 238 ~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~---~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRa 304 (309)
T PF09728_consen 238 VFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNK---ALIEMAEERQKLEKELEKLKKKIEKLEKLCRA 304 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888888899999999999986654443 33445677777788889999999999944443
No 161
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.86 E-value=4.1e+02 Score=28.15 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWR 245 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~ 245 (286)
+..|....+...+.+.++..|.||++.+-- +...-+..|+.+|..-.+++.+|..-|-
T Consensus 361 ~~~e~~~~~~~~~~le~~~~l~~k~~~lL~-------d~e~ni~kL~~~v~~s~~rl~~L~~qWe 418 (594)
T PF05667_consen 361 LEEELEEKEAENEELEEELKLKKKTVELLP-------DAEENIAKLQALVEASEQRLVELAQQWE 418 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555554422 2223345555566666666666665553
No 162
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.78 E-value=4e+02 Score=26.63 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~ 239 (286)
..++.+.+.+++..+++-+...|.++.-=..-.+-.+...+++...+..+.++..+.+.
T Consensus 354 ~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 412 (503)
T KOG2273|consen 354 AEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRS 412 (503)
T ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Confidence 56788888888888888888888777543333333344455555556666666555544
No 163
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.58 E-value=5.1e+02 Score=28.00 Aligned_cols=68 Identities=28% Similarity=0.333 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhhHHHHH-Hhh
Q 023202 186 KMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHH-----------LKQLVSQYQEQLRTLETSWRLMTLM-FDL 253 (286)
Q Consensus 186 ~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~-----------lkqlv~qyqeq~r~LE~~~~~~~~~-~~~ 253 (286)
+.+|+....|-.|-.-|.+-+..--++..++|...+|++. |--.++--||+=.+||.+|.-||-+ .||
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldL 620 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDL 620 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4577788888888888888887777777777665544444 3344567899999999999888743 444
No 164
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=39.38 E-value=37 Score=28.69 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=14.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQEN 199 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN 199 (286)
+.+++||.+||.+++.|+.-.
T Consensus 82 ~~LeEENNlLklKievLLDML 102 (108)
T cd07429 82 QQLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 347777778877777776543
No 165
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=39.37 E-value=1.8e+02 Score=22.61 Aligned_cols=20 Identities=40% Similarity=0.521 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023202 189 KEQVEALIQENMILKRAVSI 208 (286)
Q Consensus 189 Keq~~~l~~eN~iLKrAv~I 208 (286)
-+++..|+.||.-||-|+.-
T Consensus 5 ~~~l~~LL~EN~~LKealrQ 24 (68)
T PF11577_consen 5 QQQLQELLQENQDLKEALRQ 24 (68)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 45677888888888887754
No 166
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=39.17 E-value=2.1e+02 Score=23.29 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 180 SFHQENKMLKEQVEALIQENMILKRA 205 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~iLKrA 205 (286)
++++++-.+.+++..+..+|.-+|+.
T Consensus 7 ~~~~~~~~l~~~L~~v~~~~l~l~~~ 32 (106)
T PF05837_consen 7 NLQQESRSLQEKLSDVEKKRLRLKRR 32 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555543
No 167
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=38.99 E-value=2.1e+02 Score=23.28 Aligned_cols=35 Identities=29% Similarity=0.513 Sum_probs=19.6
Q ss_pred HhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVE------ALIQENMILKRAVSIQHERQKEYE 217 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~------~l~~eN~iLKrAv~IQheR~~e~e 217 (286)
..+.+|++.|++|++ +..-||.-|+- |..|.+.+.
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~e----e~rrl~~f~ 67 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIRLRE----ELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 446677777776654 34455555543 445555554
No 168
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=38.88 E-value=2.4e+02 Score=23.91 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023202 184 ENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMT 248 (286)
Q Consensus 184 En~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~ 248 (286)
.+..|..|+....+....|+. |++.....+..-..-+.+++..++.++..|+.+.
T Consensus 28 ~~~~LE~qL~~~~~~l~lLq~----------e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 28 RKRALERQLAANLHQLELLQE----------EIEKEEAALERDYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555554444443 3333344444444555666666666666666554
No 169
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=38.87 E-value=2.1e+02 Score=27.44 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHh
Q 023202 230 VSQYQEQLRTLE 241 (286)
Q Consensus 230 v~qyqeq~r~LE 241 (286)
+-|.|.+++.-|
T Consensus 90 IQqLqk~LK~aE 101 (272)
T KOG4552|consen 90 IQQLQKNLKSAE 101 (272)
T ss_pred HHHHHHHHHHHH
Confidence 344444555444
No 170
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=38.86 E-value=2.5e+02 Score=24.04 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 023202 157 RASRALEILEKSICA 171 (286)
Q Consensus 157 RAsRvLEafEKsi~~ 171 (286)
+..+-|+.+++-+.+
T Consensus 92 ~l~~el~~l~~~~~~ 106 (191)
T PF04156_consen 92 QLQEELDQLQERIQE 106 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 171
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=38.80 E-value=1.4e+02 Score=23.21 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 209 QHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 209 QheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
-..|.++.+.+.+++.+|++-.-+-..-++.|+
T Consensus 25 l~~~~~ei~~~d~~le~l~~q~~k~~~~~~~L~ 57 (80)
T PF11488_consen 25 LESRFKEIDSKDKELEELYQQDCKTEMEVKMLE 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888887775555556666666
No 172
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=38.79 E-value=2.3e+02 Score=23.57 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 023202 151 IDDARARASRALEILEKSICARAS 174 (286)
Q Consensus 151 ~dDARaRAsRvLEafEKsi~~ra~ 174 (286)
+++.+.+|..-.+-+|+.+.++..
T Consensus 61 ~~~~~~~~~~~~~~le~~~~~~v~ 84 (118)
T TIGR01837 61 LEQTRDQVQRNWDKLEKAFDERVE 84 (118)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555665555555555555443
No 173
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=38.55 E-value=47 Score=30.74 Aligned_cols=53 Identities=8% Similarity=0.149 Sum_probs=40.7
Q ss_pred ccccCCCCCCCCCCCCCCccchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 26 R~Rcssssp~rf~~p~~~~~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
|.||- .++|.+|.. +.+...|...|+++++..+++++.-||.....|++-+.+
T Consensus 141 ~SRc~---~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~~~a~~~~~~ 193 (313)
T PRK05564 141 KSRCQ---IYKLNRLSK--EEIEKFISYKYNDIKEEEKKSAIAFSDGIPGKVEKFIED 193 (313)
T ss_pred Hhhce---eeeCCCcCH--HHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 77884 677777533 567788888999999999999999999888877765543
No 174
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=38.31 E-value=3.7e+02 Score=28.01 Aligned_cols=98 Identities=19% Similarity=0.244 Sum_probs=67.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 023202 147 SSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYE----DRSQE 222 (286)
Q Consensus 147 sAsd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e----~~~~E 222 (286)
+-...++|+.=..|++++++| +-. +....+....-|..++.+...+.-+.-.+|++|+.|+-....+.. .-.-.
T Consensus 295 ~~GKf~EA~~~~e~Al~I~~~-~~~-~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~n 372 (508)
T KOG1840|consen 295 KQGKFAEAEEYCERALEIYEK-LLG-ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYAN 372 (508)
T ss_pred ccCChHHHHHHHHHHHHHHHH-hhc-cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 346788999999999999999 333 333344556677788888888888888899999988873332222 12245
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH
Q 023202 223 LHHLKQLVSQYQEQLRTLETSWRL 246 (286)
Q Consensus 223 ~~~lkqlv~qyqeq~r~LE~~~~~ 246 (286)
+-.|.+-..+|+|=..-++.++-+
T Consensus 373 l~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 373 LAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHH
Confidence 566667777787777777755543
No 175
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=38.21 E-value=5.3e+02 Score=27.65 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHcCCCHHHHHHH
Q 023202 59 DNQILDRALEECGDDLDSAIRS 80 (286)
Q Consensus 59 D~q~le~aLe~cGndlDsAIks 80 (286)
|-+.|-.+|++-..||..|.|-
T Consensus 63 d~d~lt~lle~k~~dlElaAki 84 (596)
T KOG4360|consen 63 DIDFLTELLEEKRRDLELAAKI 84 (596)
T ss_pred chHHHHHHHhcccchhHHHHHH
Confidence 5568999999999999999874
No 176
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=38.16 E-value=1.1e+02 Score=32.68 Aligned_cols=47 Identities=32% Similarity=0.387 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023202 155 RARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 155 RaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLK 203 (286)
|-|=...++.+|.=+-+--+ .-+.+++||..||.||+.|..||..||
T Consensus 297 RkKKKEy~~~Le~rLq~ll~--Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 297 RKKKKEYMLGLEARLQALLS--ENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 44444566677765554222 245689999999999999999999986
No 177
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=37.95 E-value=29 Score=34.48 Aligned_cols=41 Identities=32% Similarity=0.310 Sum_probs=31.1
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
-++|.+||.-= +-.---..++|++||+|++.|-+-|++=..
T Consensus 47 ~allk~LR~kT-gas~~ncKkALee~~gDl~~A~~~L~k~aq 87 (340)
T KOG1071|consen 47 KALLKKLREKT-GASMVNCKKALEECGGDLVLAEEWLHKKAQ 87 (340)
T ss_pred HHHHHHHHHHc-CCcHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 46788888642 223345789999999999999999988543
No 178
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=37.77 E-value=2.5e+02 Score=23.79 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQL 237 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~ 237 (286)
+.-|...||.++.+|..+..-|..=+.-.-.+..+......++..|++-+...+.+.
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666667777777666666666555555554444444455555444444444433
No 179
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=37.74 E-value=2e+02 Score=24.80 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhH
Q 023202 151 IDDARARASRALEILEKSICARASA 175 (286)
Q Consensus 151 ~dDARaRAsRvLEafEKsi~~ra~a 175 (286)
++|.+.||..-+.-+|+.+-.|...
T Consensus 74 ~~~~~~~~~~~~dklE~~fd~rV~~ 98 (132)
T PF05597_consen 74 VDDVKERATGQWDKLEQAFDERVAR 98 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777776553
No 180
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=37.43 E-value=3.6e+02 Score=25.45 Aligned_cols=131 Identities=19% Similarity=0.294 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 153 DARARASRALEILEKSICARASAEAAQSFHQE--------------NKMLKEQVEALIQENMILKRAVSIQHERQKEYED 218 (286)
Q Consensus 153 DARaRAsRvLEafEKsi~~ra~ae~~~~~~kE--------------n~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~ 218 (286)
.|+.++-.+...||+++..+.+|-.+=.+-++ ..||-.....+..-..--.+|=..+..+...|..
T Consensus 74 ~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ 153 (239)
T PF05276_consen 74 EAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNE 153 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788899999888776544222211 1455444444444444444455555555555555
Q ss_pred HHHHHHHHH---------------------HHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHHHHhhhcCCC
Q 023202 219 RSQELHHLK---------------------QLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAEHSNSI 277 (286)
Q Consensus 219 ~~~E~~~lk---------------------qlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL~qa~~~~~~ 277 (286)
...+++.|. +.+.+-..+|..||..++..|.-+.--|.| ...++=.+|-+.-... ..
T Consensus 154 ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrn-LE~ISeeIH~~R~~~~-~~ 231 (239)
T PF05276_consen 154 AEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRN-LEQISEEIHEQRRRRS-AE 231 (239)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCC-CC
Confidence 555555433 222233344555555555555333333333 2234445677665544 34
Q ss_pred CCCCCCCC
Q 023202 278 PGRFHPDV 285 (286)
Q Consensus 278 ~g~~~PDv 285 (286)
.|..-|-|
T Consensus 232 ~g~~~~~~ 239 (239)
T PF05276_consen 232 SGPREPGV 239 (239)
T ss_pred CCCCCCCC
Confidence 55544443
No 181
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=37.42 E-value=3.3e+02 Score=24.95 Aligned_cols=106 Identities=22% Similarity=0.260 Sum_probs=0.0
Q ss_pred hcCCChHHHHHHHHHHHHHH---HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 146 MSSSNIDDARARASRALEIL---EKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQE 222 (286)
Q Consensus 146 ~sAsd~dDARaRAsRvLEaf---EKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E 222 (286)
....++..+-+-|.++|+.. -=......+.++....+.=....+..+.....+|..|+..+. ++..+| +-.
T Consensus 120 ~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~---~~L~~~---~~k 193 (264)
T PF06008_consen 120 LPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIR---DDLNDY---NAK 193 (264)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHH---HHHHHH---HHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHHHH
Q 023202 223 LHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQ 270 (286)
Q Consensus 223 ~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL~q 270 (286)
|..|+.++.+.+.+++.-+ --|..|.-.|..|.++
T Consensus 194 L~Dl~~~l~eA~~~~~ea~-------------~ln~~n~~~l~~~~~k 228 (264)
T PF06008_consen 194 LQDLRDLLNEAQNKTREAE-------------DLNRANQKNLEDLEKK 228 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHH
No 182
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.34 E-value=1.9e+02 Score=30.47 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=31.5
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
...|+.|..+ +.+.-.-+.|||.-||+.|-|++.|.-
T Consensus 430 ~~~la~Lv~m--GF~e~~A~~ALe~~gnn~~~a~~~L~~ 466 (568)
T KOG2561|consen 430 GISLAELVSM--GFEEGKARSALEAGGNNEDTAQRLLSA 466 (568)
T ss_pred hhhHHHHHHh--ccccchHHHHHHhcCCcHHHHHHHHHH
Confidence 3567888765 678888999999999999999999976
No 183
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=37.27 E-value=14 Score=26.77 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 57 DMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 57 ~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
+|.++--.+.|+++|=|++.||..+.+|.-
T Consensus 12 gmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~ 41 (51)
T PF03943_consen 12 GMNLEWSQKCLEENNWDYERALQNFEELKA 41 (51)
T ss_dssp SS-CCHHHHHHHHTTT-CCHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 677788899999999999999999998764
No 184
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=37.27 E-value=1.5e+02 Score=22.05 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWR 245 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~ 245 (286)
+.+|..-|..+++.+..+-..+..-++-.+--.+.=.+-+.. -+.-+..|++++..|+..+.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~---er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEK---EREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444444333333222222111111 12346677777777775443
No 185
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=37.25 E-value=4.2e+02 Score=27.78 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 023202 182 HQENKMLKEQVEALIQ 197 (286)
Q Consensus 182 ~kEn~~lKeq~~~l~~ 197 (286)
|.....++.|++.+.+
T Consensus 315 hP~v~~l~~qi~~l~~ 330 (754)
T TIGR01005 315 HPRVVAAKSSLADLDA 330 (754)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4444445555544443
No 186
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=37.14 E-value=58 Score=31.87 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHcC
Q 023202 59 DNQILDRALEECG 71 (286)
Q Consensus 59 D~q~le~aLe~cG 71 (286)
+-++++..-++|.
T Consensus 164 ~s~~l~~i~~~C~ 176 (294)
T KOG4571|consen 164 KSTILEEIVRECE 176 (294)
T ss_pred hhHHHHHHHHHHH
Confidence 3456666667776
No 187
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=37.05 E-value=1.4e+02 Score=22.58 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 023202 222 ELHHLKQLVSQYQEQLRTLETSWR 245 (286)
Q Consensus 222 E~~~lkqlv~qyqeq~r~LE~~~~ 245 (286)
-+..|.++|.+-|.+|..|+..++
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888888888883333
No 188
>PRK04195 replication factor C large subunit; Provisional
Probab=36.75 E-value=52 Score=32.69 Aligned_cols=50 Identities=26% Similarity=0.400 Sum_probs=38.0
Q ss_pred CCCCCCCCCCccchHHHHHhhC----CCCCHHHHHHHHHHcCCCHHHHHHHHhhhh
Q 023202 34 PVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELR 85 (286)
Q Consensus 34 p~rf~~p~~~~~~ll~~L~~lF----P~mD~q~le~aLe~cGndlDsAIksL~~L~ 85 (286)
.++|.+|.. ..+...|..++ -.+++.+|+.+.+.||.||-.||..|.-+.
T Consensus 154 ~I~f~~~~~--~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 154 MIEFKRLST--RSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred EEEecCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 577877644 45566666554 247899999999999999999998886643
No 189
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=36.73 E-value=4.6e+02 Score=26.43 Aligned_cols=88 Identities=26% Similarity=0.240 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhH----------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----HHHHHH
Q 023202 156 ARASRALEILEKSICARASAEAAQSFH----------QENKMLKEQVEALIQEN--MILKRAVSIQHER-----QKEYED 218 (286)
Q Consensus 156 aRAsRvLEafEKsi~~ra~ae~~~~~~----------kEn~~lKeq~~~l~~eN--~iLKrAv~IQheR-----~~e~e~ 218 (286)
.|-.|-||--||--.++-+.|...... +|.+.+.+--.+-.++. .+||+-+.-|..| +|+.+.
T Consensus 322 e~kkrqlerqekqeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqkeeek 401 (445)
T KOG2891|consen 322 EIKKRQLERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKEEEK 401 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 455666666666555554444332222 22233222222233344 6888888666544 345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 023202 219 RSQELHHLKQLVSQYQEQLRTLETSWRLM 247 (286)
Q Consensus 219 ~~~E~~~lkqlv~qyqeq~r~LE~~~~~~ 247 (286)
...|.+.+| +.+||++.-|.++++-
T Consensus 402 lk~e~qkik----eleek~~eeedal~~a 426 (445)
T KOG2891|consen 402 LKAEEQKIK----ELEEKIKEEEDALLLA 426 (445)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 556665544 4567777767555543
No 190
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=36.62 E-value=1.3e+02 Score=28.28 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 186 KMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQ 236 (286)
Q Consensus 186 ~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq 236 (286)
..++.++.-|-+||..|++-| +...+|+.+|+++..+|.+.
T Consensus 218 ~e~~~r~~~leken~~lr~~v----------~~l~~el~~~~~~~~~~~~~ 258 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQV----------EQLKKELATLRRLFLQLPKP 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhccc
Confidence 334556777777777776644 23456777777777777654
No 191
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=36.14 E-value=58 Score=30.97 Aligned_cols=45 Identities=29% Similarity=0.468 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 023202 150 NIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQE 198 (286)
Q Consensus 150 d~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~e 198 (286)
+.-|=|| |++++|++.|.+--....+ .+.||-+++++|++.+.++
T Consensus 182 ~~PDP~A-Aa~vve~lnk~~~l~V~td---~L~keAe~i~~~lekl~eq 226 (244)
T COG1938 182 DRPDPRA-AARVVEALNKMLGLNVDTD---KLEKEAEEIEEQLEKLAEQ 226 (244)
T ss_pred CCCChHH-HHHHHHHHHHHhcCccCHH---HHHHHHHHHHHHHHHHHHH
Confidence 3446665 7899999999988777664 4888888888777776553
No 192
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=36.06 E-value=1.6e+02 Score=32.05 Aligned_cols=82 Identities=27% Similarity=0.325 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVS--IQHERQ------------KEYEDRSQELHHLKQLVSQYQEQLRTLETSWRL 246 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~--IQheR~------------~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~ 246 (286)
+.+|....-.-+..+-.+-+.|++||. ++..|+ ++.+....|+-.||-|++-=+|||-||=|-++-
T Consensus 536 ~r~ep~~i~nl~~~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLSTKREQIaTLRTVLKA 615 (717)
T PF09730_consen 536 SRKEPMNIYNLVAIIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLSTKREQIATLRTVLKA 615 (717)
T ss_pred hccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566667777888999996 556555 455566688999999999999999999999999
Q ss_pred HHHHHhhhhccchhhH
Q 023202 247 MTLMFDLVLSNQVNNY 262 (286)
Q Consensus 247 ~~~~~~~~~~~~~~Ny 262 (286)
-|..-...|+|--.-|
T Consensus 616 NKqTAEvALanLKsKY 631 (717)
T PF09730_consen 616 NKQTAEVALANLKSKY 631 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888888888866555
No 193
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=35.98 E-value=4.4e+02 Score=29.03 Aligned_cols=103 Identities=25% Similarity=0.417 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHH---------HHHHHHHHHHHHH----------------hhHHHHHhhHHHHHHHHH
Q 023202 136 EWVELFVREMMSSSNIDDARARAS---------RALEILEKSICAR----------------ASAEAAQSFHQENKMLKE 190 (286)
Q Consensus 136 eWVEl~V~EM~sAsd~dDARaRAs---------RvLEafEKsi~~r----------------a~ae~~~~~~kEn~~lKe 190 (286)
+|++-.+++ ...-++.++.|-. .++.-+|+++... -..+....+++|++.||.
T Consensus 402 e~Lee~l~e--kd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~ 479 (775)
T PF10174_consen 402 ENLEEQLRE--KDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKA 479 (775)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 191 QVEALIQE-------------------------NMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 191 q~~~l~~e-------------------------N~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
.++.|..+ +.-|||+--.=-....+|.....++..++. ...+...|+.||
T Consensus 480 ~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~-~~e~~~r~~~Le 554 (775)
T PF10174_consen 480 KLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRA-NAELRDRIQQLE 554 (775)
T ss_pred HHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CHhhcchHHHHH
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=35.84 E-value=3.3e+02 Score=25.40 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=23.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRS 220 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~ 220 (286)
.+.++.|+..|+.++|.+..+..-++ .-|-++..+.+.+.
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~---~rq~~~y~dld~r~ 102 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVV---ERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 45577777888877777766644332 33444444444443
No 195
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=35.50 E-value=6.4e+02 Score=27.79 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
++.....++.++..+..||..|.+++ .+|-+-..+...+..+...-+.-.+.+|..+|
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~~l---~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~e 147 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSKAL---QEKEKLIAELSEEKSQAEAEIEDLMARLESTE 147 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455667788889999999999987 45655555555555555555555555666666
No 196
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.36 E-value=1.4e+02 Score=23.00 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHH
Q 023202 222 ELHHLKQLVSQYQEQLRTLETSWRLM 247 (286)
Q Consensus 222 E~~~lkqlv~qyqeq~r~LE~~~~~~ 247 (286)
-+..|..+|.+-|.+|..|+..++++
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788999999999988554444
No 197
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.33 E-value=3.2e+02 Score=31.36 Aligned_cols=71 Identities=25% Similarity=0.280 Sum_probs=47.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQ-------------------------------HERQKEYEDRSQELHHLK 227 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQ-------------------------------heR~~e~e~~~~E~~~lk 227 (286)
+++++|.++++..++.|++..--|+|=+.+= -+|-+.+++-..++..|.
T Consensus 399 qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEale 478 (1243)
T KOG0971|consen 399 QKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALE 478 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777776666666655442 234455555556677777
Q ss_pred HHHHHHHHHHHHHhhhhhHHHH
Q 023202 228 QLVSQYQEQLRTLETSWRLMTL 249 (286)
Q Consensus 228 qlv~qyqeq~r~LE~~~~~~~~ 249 (286)
++=.|.+|--+.||.-+|-+--
T Consensus 479 e~~EQL~Esn~ele~DLreEld 500 (1243)
T KOG0971|consen 479 EMNEQLQESNRELELDLREELD 500 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888877776543
No 198
>PF14645 Chibby: Chibby family
Probab=35.06 E-value=45 Score=28.00 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSI 208 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~I 208 (286)
...++..++++..+|..||+.||-=+.|
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIEL 96 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888754333
No 199
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.60 E-value=3.6e+02 Score=24.67 Aligned_cols=52 Identities=13% Similarity=0.074 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 180 SFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
...++...+++.++...++..= -.++++...+|+..++.-+...+.++.++.
T Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~----------L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 115 TWNQRTAEMQQKVAQSDSVING----------LKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666555543333211 233444445666666776666677777776
No 200
>PRK03918 chromosome segregation protein; Provisional
Probab=34.56 E-value=5.7e+02 Score=26.92 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=6.1
Q ss_pred CCccchHHHHH
Q 023202 42 SSRSHLLDQLA 52 (286)
Q Consensus 42 ~~~~~ll~~L~ 52 (286)
+|.+++++++.
T Consensus 34 ~GKStil~ai~ 44 (880)
T PRK03918 34 SGKSSILEAIL 44 (880)
T ss_pred CCHHHHHHHHH
Confidence 34556666654
No 201
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=34.52 E-value=6e+02 Score=27.13 Aligned_cols=32 Identities=41% Similarity=0.511 Sum_probs=17.2
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 023202 185 NKMLKEQVEA-------LIQENMILKRAVSIQHERQKEY 216 (286)
Q Consensus 185 n~~lKeq~~~-------l~~eN~iLKrAv~IQheR~~e~ 216 (286)
|..||+||.. |..+|+-|+-++..-....+++
T Consensus 162 N~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL 200 (617)
T PF15070_consen 162 NRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKEL 200 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 4556666654 4567776666654433333333
No 202
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=34.25 E-value=3.2e+02 Score=27.66 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 195 LIQENMILKRAVSIQHERQK-EYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 195 l~~eN~iLKrAv~IQheR~~-e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+..|-.-||..++-=-||.. .+.+|.++++. .+..+|.+|-.||
T Consensus 274 Hq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E---~~Es~qtRisklE 318 (395)
T PF10267_consen 274 HQNEIYNLKQELASMEEKMAYQSYERARDIWE---VMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHH
Confidence 33444455555443333332 22234444433 5555666666665
No 203
>PF15463 ECM11: Extracellular mutant protein 11
Probab=34.24 E-value=1.6e+02 Score=25.00 Aligned_cols=60 Identities=22% Similarity=0.428 Sum_probs=40.4
Q ss_pred ChhhHHHH---HHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHH
Q 023202 133 DGPEWVEL---FVREMM-SSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQ 197 (286)
Q Consensus 133 ~g~eWVEl---~V~EM~-sAsd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~ 197 (286)
+=.+|.+. |+.+.. -..-|.++|.-=+++-+.||+.|..|+.+ +..+...|.++|+.+..
T Consensus 70 s~~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~ea-----v~~~~~~l~~kL~~mk~ 133 (139)
T PF15463_consen 70 SFDEWEEAGDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEA-----VRAQGEQLDRKLEKMKE 133 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 44566542 343333 23457788888888899999999999887 55666666666666554
No 204
>PRK04863 mukB cell division protein MukB; Provisional
Probab=33.77 E-value=8.7e+02 Score=28.77 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q 023202 229 LVSQYQEQLRTLE 241 (286)
Q Consensus 229 lv~qyqeq~r~LE 241 (286)
-+.+|++.+..|+
T Consensus 412 el~q~qq~i~~Le 424 (1486)
T PRK04863 412 RAIQYQQAVQALE 424 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 205
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=33.67 E-value=5.1e+02 Score=26.10 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
.+.++..|+.|+..+..+..--+..+.- .+......+.++.+-+.+++.|+..|+
T Consensus 65 ~~~~~~~L~~ql~~~~~~~~~~~~~l~~------~~~~~~~~l~~~e~~~~~l~~q~~~Lq 119 (390)
T PRK10920 65 QTATNDALANQLTALQKAQESQKQELEG------ILKQQAKALDQANRQQAALAKQLDELQ 119 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888887776654322211111 111112234444445555666666665
No 206
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=33.62 E-value=72 Score=33.03 Aligned_cols=47 Identities=28% Similarity=0.376 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 187 MLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 187 ~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
.-|.++..-.. |.|+-+-+.+|- ||..++-.+.+ ++..||.||+++|
T Consensus 351 ~~k~e~~~k~s-Nvi~eKt~Lrqk-rq~A~e~~n~k------~~~ey~~qL~~~E 397 (521)
T COG5296 351 ACKDEVHPKRS-NVIHEKTELRQK-RQRAIELKNKK------AAMEYQRQLEEIE 397 (521)
T ss_pred HHHHhcCccch-hHHHHHHHHHHH-HHHHHHccCHH------HHHHHHHHHHHHH
Confidence 33445544444 888888888874 66666555444 5999999999999
No 207
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=33.51 E-value=3.6e+02 Score=27.53 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=17.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 175 AEAAQSFHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 175 ae~~~~~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
.|..+.-|+|...||-|-+.|+.+-.-..-
T Consensus 91 ~es~~e~q~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 91 RESVEERQQESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344455666777777776666655444444
No 208
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.34 E-value=4e+02 Score=28.57 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHH
Q 023202 230 VSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALT 265 (286)
Q Consensus 230 v~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~ 265 (286)
...|+++++.++ |||-++-..|+-|.
T Consensus 283 ~~e~rk~v~k~~----------~l~q~~~~~~~eL~ 308 (613)
T KOG0992|consen 283 TTEKRKAVKKRD----------DLIQSRKQVSFELE 308 (613)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 456777777766 66666666666554
No 209
>PRK04325 hypothetical protein; Provisional
Probab=33.28 E-value=1.6e+02 Score=22.85 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHH
Q 023202 222 ELHHLKQLVSQYQEQLRTLETSWRLM 247 (286)
Q Consensus 222 E~~~lkqlv~qyqeq~r~LE~~~~~~ 247 (286)
-+..|..+|.+-|.+|..|+..++.+
T Consensus 24 tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 24 LIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788999999999998444443
No 210
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=33.21 E-value=1.1e+02 Score=23.83 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023202 215 EYEDRSQELHHLKQLVSQYQEQ 236 (286)
Q Consensus 215 e~e~~~~E~~~lkqlv~qyqeq 236 (286)
+.+...+|++.++.++.+.+..
T Consensus 51 e~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 51 EVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666665543
No 211
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=33.00 E-value=81 Score=32.85 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH---------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 023202 183 QENKMLKEQVEALIQENMILKRAVSIQHERQKE-----------YE---------DRSQELHHLKQLVSQYQEQLRTLET 242 (286)
Q Consensus 183 kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e-----------~e---------~~~~E~~~lkqlv~qyqeq~r~LE~ 242 (286)
.+++.|+.||.+|.++-.-|+..++-|+.---- -. --+.+++++||-|+..+=|+..||.
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l~d 104 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESLED 104 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHHhh
Confidence 456677777777777777777777766652210 00 0145677788888888999999996
Q ss_pred hhh
Q 023202 243 SWR 245 (286)
Q Consensus 243 ~~~ 245 (286)
+|.
T Consensus 105 a~~ 107 (514)
T PF11336_consen 105 AAE 107 (514)
T ss_pred HHh
Confidence 654
No 212
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=32.85 E-value=6.1e+02 Score=26.69 Aligned_cols=74 Identities=23% Similarity=0.421 Sum_probs=35.3
Q ss_pred HHHHHHhhHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 023202 167 KSICARASAEAAQSFHQ-----------ENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHH-------LKQ 228 (286)
Q Consensus 167 Ksi~~ra~ae~~~~~~k-----------En~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~-------lkq 228 (286)
|+.|+|.-|+.-..-|| |...|++.-++|+.|-.- --+-+|---.....|++.+||.. ...
T Consensus 336 qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETA-ATiSAIEAMKnAhrEEmeRELeKsqSvnsdvea 414 (593)
T KOG4807|consen 336 QATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETA-ATISAIEAMKNAHREEMERELEKSQSVNSDVEA 414 (593)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHhhhccccChHH
Confidence 56677766632222222 445555555555544321 11223333333344455555532 334
Q ss_pred HHHHHHHHHHHHh
Q 023202 229 LVSQYQEQLRTLE 241 (286)
Q Consensus 229 lv~qyqeq~r~LE 241 (286)
|-.||++.+..+.
T Consensus 415 LRrQyleelqsvq 427 (593)
T KOG4807|consen 415 LRRQYLEELQSVQ 427 (593)
T ss_pred HHHHHHHHHHHHH
Confidence 5667877775444
No 213
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=32.69 E-value=3.3e+02 Score=24.66 Aligned_cols=27 Identities=26% Similarity=0.211 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023202 222 ELHHLKQLVSQYQEQLRTLETSWRLMT 248 (286)
Q Consensus 222 E~~~lkqlv~qyqeq~r~LE~~~~~~~ 248 (286)
-+..+|+.|-+.|.++-.||.-++...
T Consensus 40 ~v~gik~~V~~L~aRV~alE~~l~dq~ 66 (204)
T PF00517_consen 40 TVWGIKQGVKQLQARVLALERYLKDQQ 66 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhHHHHHHHhhhHH
Confidence 355889999999999999995444443
No 214
>PRK04863 mukB cell division protein MukB; Provisional
Probab=32.60 E-value=9e+02 Score=28.63 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhhhH
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHH--------------LKQLVSQYQEQLRTLETSWRL 246 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~--------------lkqlv~qyqeq~r~LE~~~~~ 246 (286)
+..|...+++++..+..+..-+..++..+..+...|+...+++.. |+..+.+|++++..++..+..
T Consensus 381 leeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~e 460 (1486)
T PRK04863 381 NEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLS 460 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666566555666777777777777655544443 344445666666666654443
No 215
>PRK12704 phosphodiesterase; Provisional
Probab=32.23 E-value=5.9e+02 Score=26.37 Aligned_cols=11 Identities=36% Similarity=0.510 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q 023202 152 DDARARASRAL 162 (286)
Q Consensus 152 dDARaRAsRvL 162 (286)
.+|+..|..++
T Consensus 34 ~~Ae~eAe~I~ 44 (520)
T PRK12704 34 KEAEEEAKRIL 44 (520)
T ss_pred HHHHHHHHHHH
Confidence 56666666655
No 216
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.19 E-value=4.5e+02 Score=24.95 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=22.0
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHH---HhhHHHHHhhHHHHHHHHHHHHHH
Q 023202 147 SSSNIDDARARASRALEILEKSICA---RASAEAAQSFHQENKMLKEQVEAL 195 (286)
Q Consensus 147 sAsd~dDARaRAsRvLEafEKsi~~---ra~ae~~~~~~kEn~~lKeq~~~l 195 (286)
.+.|-++|..-|-.+++..|..|.. +...++..-++++...++++++..
T Consensus 138 ~~~dP~~A~~ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~a 189 (362)
T TIGR01010 138 TAFDAEEAQKINQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNAT 189 (362)
T ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444443332 222333333444444444444443
No 217
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=31.81 E-value=2.7e+02 Score=25.29 Aligned_cols=52 Identities=27% Similarity=0.295 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 023202 153 DARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQEN---MILKRAVSI 208 (286)
Q Consensus 153 DARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN---~iLKrAv~I 208 (286)
-+.++|-.+|++|-+.|...-.. ..+.+ ...|+...+.|.+-. ..+.+++..
T Consensus 4 Gs~~~ai~al~~L~~~i~~~~~~-~~~el---~~~L~~~~~~L~~arP~~~~l~n~v~~ 58 (282)
T PF01008_consen 4 GSPAIAIAALEALRQVISDSKAT-TVQEL---IEELRKAAKRLIKARPTSVSLGNAVRR 58 (282)
T ss_dssp SHHHHHHHHHHHHHHHHHHCHCS-SHHHH---HHHHHHHHHHHHTSSTS-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcCCC-CHHHH---HHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 46789999999999988875432 22334 344555555554422 244555443
No 218
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=31.68 E-value=4.7e+02 Score=25.03 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhh
Q 023202 190 EQVEALIQENMILKRAVSIQHERQKEYEDRS--QELHHLKQLVSQYQEQLRTLETSWR 245 (286)
Q Consensus 190 eq~~~l~~eN~iLKrAv~IQheR~~e~e~~~--~E~~~lkqlv~qyqeq~r~LE~~~~ 245 (286)
.+|..|+.+..-+|+++..||....++=.+. .||. .+=.+|++-.+..|++-+
T Consensus 98 ~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t~~eve---K~Kk~Y~~~c~~~e~AR~ 152 (237)
T cd07685 98 SKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTTQQDIE---KLKSQYRSLAKDSAQAKR 152 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999988654322 3454 455689998888886544
No 219
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.55 E-value=4e+02 Score=25.76 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhh
Q 023202 176 EAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVL 255 (286)
Q Consensus 176 e~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~ 255 (286)
...++++.|...|-.|++.+ ++..++...|+.++++-+.+|+.+|..|+..++
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~-----------------~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~---------- 97 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEI-----------------QSKIDELQKEIDQSKAEIKKLQKEIAELKENIV---------- 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_pred ccchhhHHHHHHHHHhhhcCCCCCC
Q 023202 256 SNQVNNYALTMHLKQAEHSNSIPGR 280 (286)
Q Consensus 256 ~~~~~NyaL~~hL~qa~~~~~~~g~ 280 (286)
..|-.|.-.+|-++.++.-.++
T Consensus 98 ---~r~~~l~~raRAmq~nG~~t~Y 119 (265)
T COG3883 98 ---ERQELLKKRARAMQVNGTATSY 119 (265)
T ss_pred ---HHHHHHHHHHHHHHHcCChhHH
No 220
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=31.48 E-value=5.2e+02 Score=25.50 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=52.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 176 EAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 176 e~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
-++--+.+.....+..+++|..|-.-.|..+.+==+|..+...-..=+++|+.-+.-|.+||..||
T Consensus 250 kGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELe 315 (336)
T PF05055_consen 250 KGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELE 315 (336)
T ss_pred hccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344445677788888999999999999998887777776544444457888889999999999999
No 221
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.45 E-value=3.6e+02 Score=28.34 Aligned_cols=17 Identities=53% Similarity=0.702 Sum_probs=12.2
Q ss_pred HHHHHHHHHHH--------HHHHHh
Q 023202 225 HLKQLVSQYQE--------QLRTLE 241 (286)
Q Consensus 225 ~lkqlv~qyqe--------q~r~LE 241 (286)
.|.|++.|||| +||.||
T Consensus 147 ~lEq~leqeqef~vnKlm~ki~Kle 171 (552)
T KOG2129|consen 147 PLEQLLEQEQEFFVNKLMNKIRKLE 171 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45689999994 566665
No 222
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=31.38 E-value=71 Score=30.66 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=38.7
Q ss_pred ccccccCCCCCCCCCCCCCCccchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 023202 24 SKRIRCSSSSPVRFSPPRSSRSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSL 81 (286)
Q Consensus 24 sKR~Rcssssp~rf~~p~~~~~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL 81 (286)
+=|+||- .++|.||.. +..+..|...+|..++.-+..++.-++.....|++-+
T Consensus 152 TI~SRc~---~~~~~~~~~--~~~~~~L~~~~~~~~~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 152 TIKSRCQ---QQACPLPSN--EESLQWLQQALPESDERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred HHHhhce---eeeCCCcCH--HHHHHHHHHhcccCChHHHHHHHHHcCCCHHHHHHHH
Confidence 5688995 577877633 5667778887877777777777888888887777654
No 223
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=31.37 E-value=4.8e+02 Score=25.11 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=9.5
Q ss_pred HHHHHHHcCCCHHHHHHHHhhh
Q 023202 63 LDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 63 le~aLe~cGndlDsAIksL~~L 84 (286)
|++=|++-..+|+.|=+.|..+
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~f 197 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAY 197 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 224
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=31.17 E-value=1.3e+02 Score=33.52 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHHHHhhh
Q 023202 202 LKRAVSIQHERQKEY-EDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAEH 273 (286)
Q Consensus 202 LKrAv~IQheR~~e~-e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL~qa~~ 273 (286)
+.|++.||-++.++. +..+-+...-...|...-|+++.|| .+-.-|..||++|+.
T Consensus 193 ~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq-----------------~a~~el~~~l~~ae~ 248 (966)
T KOG4286|consen 193 VTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQ-----------------EATDELDLKLRQAEV 248 (966)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHH-----------------HHHHHHHHhhhHHHh
Confidence 678999999998754 4455555555556777777888888 677778888888875
No 225
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=31.08 E-value=4.3e+02 Score=27.53 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=49.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhh
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQ----ELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLV 254 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~----E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~ 254 (286)
+++..|++.|-++++.+.+++..|--.+.--..+..+..++.- |-...+.-+-+.|+.+++||+-.+.-.--.|.
T Consensus 186 ~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldk- 264 (447)
T KOG2751|consen 186 KNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDK- 264 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH-
Confidence 4556677777777777777777776655444443333332221 11111111233456677777443322211221
Q ss_pred hccchhhHHHHHHHHHhhhc
Q 023202 255 LSNQVNNYALTMHLKQAEHS 274 (286)
Q Consensus 255 ~~~~~~NyaL~~hL~qa~~~ 274 (286)
-+-.|+...+||..-..+-
T Consensus 265 -L~ktNv~n~~F~I~~~G~f 283 (447)
T KOG2751|consen 265 -LRKTNVFNATFHIWHDGEF 283 (447)
T ss_pred -HHhhhhhhheeeEeecccc
Confidence 1236788888887765543
No 226
>PRK00736 hypothetical protein; Provisional
Probab=31.07 E-value=1.9e+02 Score=22.11 Aligned_cols=26 Identities=4% Similarity=0.188 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHH
Q 023202 222 ELHHLKQLVSQYQEQLRTLETSWRLM 247 (286)
Q Consensus 222 E~~~lkqlv~qyqeq~r~LE~~~~~~ 247 (286)
-+..|..+|.+-|.+|..|+..++++
T Consensus 20 tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 20 TIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888999998888554444
No 227
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.00 E-value=2e+02 Score=23.61 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 180 SFHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
.++++...++++++.+.++|.-|++
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666555544
No 228
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.64 E-value=1.9e+02 Score=30.19 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=12.0
Q ss_pred ChhhHHHHHHHHHhcCCChHHHH
Q 023202 133 DGPEWVELFVREMMSSSNIDDAR 155 (286)
Q Consensus 133 ~g~eWVEl~V~EM~sAsd~dDAR 155 (286)
|=..-|+..+.+|-+-+-+.+..
T Consensus 53 ~~~~vV~~~FddkVnqSALteqQ 75 (475)
T PRK13729 53 DMTGVVDTTFDDKVRQHATTEMQ 75 (475)
T ss_pred CccceecchhHHHHHHHHHHHHH
Confidence 33446777777773333333333
No 229
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=30.60 E-value=3.1e+02 Score=29.99 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023202 214 KEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMT 248 (286)
Q Consensus 214 ~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~ 248 (286)
-|.+...-|+...||.-...+||||.||..++..|
T Consensus 336 ~E~~vLrgElea~kqak~Klee~i~elEEElk~~k 370 (832)
T KOG2077|consen 336 CEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAK 370 (832)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567888888888899999999998777654
No 230
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=30.47 E-value=42 Score=32.81 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCHHHHHHHHhhhhcCcCCC
Q 023202 63 LDRALEECGDDLDSAIRSLNELRLGSADN 91 (286)
Q Consensus 63 le~aLe~cGndlDsAIksL~~L~L~sa~~ 91 (286)
-.+||++++.|||.||+-|..--+..+..
T Consensus 23 CKkAL~E~~Gd~EkAie~LR~kG~akA~K 51 (296)
T COG0264 23 CKKALEEANGDIEKAIEWLREKGIAKAAK 51 (296)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhchHhhhh
Confidence 46899999999999999999965555443
No 231
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=30.23 E-value=7.7e+02 Score=27.07 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHhhhcCCCCCCCC
Q 023202 259 VNNYALTMHLKQAEHSNSIPGRFH 282 (286)
Q Consensus 259 ~~NyaL~~hL~qa~~~~~~~g~~~ 282 (286)
..+|-|-+||-.+.....++|.-+
T Consensus 111 ~~~~~l~~~la~~~~~~~t~~~~~ 134 (698)
T KOG0978|consen 111 RRSNKLNKHLAEALEHLNTYGNGN 134 (698)
T ss_pred HHHHHHHHHHHHHhccCCCCCCcc
Confidence 556779999999987766666543
No 232
>PRK09458 pspB phage shock protein B; Provisional
Probab=30.22 E-value=90 Score=25.01 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 023202 219 RSQELHHLKQLVSQYQEQLRTLET 242 (286)
Q Consensus 219 ~~~E~~~lkqlv~qyqeq~r~LE~ 242 (286)
-.+.|++|-......+++|.|||.
T Consensus 40 d~~~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 40 EQQRLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888899999999993
No 233
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.09 E-value=3.7e+02 Score=23.68 Aligned_cols=54 Identities=22% Similarity=0.315 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023202 192 VEALIQENMILKRAVSI---QHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWR 245 (286)
Q Consensus 192 ~~~l~~eN~iLKrAv~I---QheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~ 245 (286)
++.|+.-+..|+.++.. +.++++......+|+..|..-+.++..+|.+.+..|.
T Consensus 4 ~~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~ 60 (188)
T PF10018_consen 4 AEDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELR 60 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666543 3334444555556666666666666666666664443
No 234
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.91 E-value=7.5e+02 Score=26.88 Aligned_cols=11 Identities=0% Similarity=0.133 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 023202 229 LVSQYQEQLRT 239 (286)
Q Consensus 229 lv~qyqeq~r~ 239 (286)
++.+.+++++.
T Consensus 578 ~l~~a~~~~~~ 588 (782)
T PRK00409 578 AIKEAKKEADE 588 (782)
T ss_pred HHHHHHHHHHH
Confidence 34444443333
No 235
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=29.89 E-value=2.7e+02 Score=26.11 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHh
Q 023202 220 SQELHHLKQLVSQYQEQLRTLETSWRL-MTLMFD 252 (286)
Q Consensus 220 ~~E~~~lkqlv~qyqeq~r~LE~~~~~-~~~~~~ 252 (286)
..|.++.++-+++.|.+.+.+..+.++ ..+.||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~F~ 140 (239)
T TIGR03789 107 EAEYQQAQVHLETLQQDQQQLLEELALGMNVQFR 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCcceeeC
Confidence 333344444444444444444434333 344454
No 236
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=29.60 E-value=70 Score=31.03 Aligned_cols=55 Identities=24% Similarity=0.395 Sum_probs=41.1
Q ss_pred ccccccCCCCCCCCCCCCCCccchHHHHHhhCCC--CCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 24 SKRIRCSSSSPVRFSPPRSSRSHLLDQLAAIFPD--MDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 24 sKR~Rcssssp~rf~~p~~~~~~ll~~L~~lFP~--mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
.=|.||. .++|.|+.. +.+.+.|....+. +++..+..+++.+|.+.-.||.-|+.
T Consensus 187 tIrSRc~---~i~l~pl~~--~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 187 TIRSRCQ---PISLKPLDD--DELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred HHHhhcc---EEEecCCCH--HHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4577884 677887633 5666777665544 66999999999999999999987754
No 237
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=29.57 E-value=2.3e+02 Score=25.18 Aligned_cols=43 Identities=30% Similarity=0.399 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023202 206 VSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMT 248 (286)
Q Consensus 206 v~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~ 248 (286)
|.|=-.=.+||+...+||..+|..|.++-+++..||..-|...
T Consensus 19 f~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR 61 (159)
T PF05384_consen 19 FEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQAR 61 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444578888888999999999999999999986555444
No 238
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=29.49 E-value=1e+03 Score=28.17 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=51.2
Q ss_pred HHHHHhcCCChHHH---HHHHHHHHHHHHHHHHHHhhHHH-HH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 141 FVREMMSSSNIDDA---RARASRALEILEKSICARASAEA-AQ-----SFHQENKMLKEQVEALIQENMILKRAVSIQHE 211 (286)
Q Consensus 141 ~V~EM~sAsd~dDA---RaRAsRvLEafEKsi~~ra~ae~-~~-----~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQhe 211 (286)
+|++|.....+++= .+.+..+..-|+..|...-..+. .+ -.|++++...+++.....++.-|++-|.=--+
T Consensus 443 l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~e 522 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEE 522 (1317)
T ss_pred hhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877776542 22222344444544444322211 11 14567777777888888888888876654433
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 023202 212 RQKEYEDRSQELHHL---KQLVSQYQEQLRT 239 (286)
Q Consensus 212 R~~e~e~~~~E~~~l---kqlv~qyqeq~r~ 239 (286)
..+.. .+.++++ .+=|.+-+.++.+
T Consensus 523 ele~~---q~~~~~~~~~~~kv~~~rk~le~ 550 (1317)
T KOG0612|consen 523 ELEDA---QKKNDNAADSLEKVNSLRKQLEE 550 (1317)
T ss_pred HHHHH---HHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333 4444443 3334444444443
No 239
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=29.32 E-value=4.9e+02 Score=26.43 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023202 220 SQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 220 ~~E~~~lkqlv~qyqeq~r~LE 241 (286)
.++..||..=+.+|+.+++.||
T Consensus 61 a~~i~~lqkkL~~y~~~l~ele 82 (395)
T PF10267_consen 61 AQTIAQLQKKLEQYHKRLKELE 82 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999
No 240
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=29.26 E-value=1.1e+02 Score=22.51 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHH
Q 023202 225 HLKQLVSQYQEQLRTLETSWRLMT 248 (286)
Q Consensus 225 ~lkqlv~qyqeq~r~LE~~~~~~~ 248 (286)
.|||=|.-.|+||+.|+.++..-+
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777778888875554443
No 241
>PRK04132 replication factor C small subunit; Provisional
Probab=29.13 E-value=55 Score=35.90 Aligned_cols=58 Identities=24% Similarity=0.349 Sum_probs=44.0
Q ss_pred ccccccCCCCCCCCCCCCCCccchHHHHHhhCC----CCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 24 SKRIRCSSSSPVRFSPPRSSRSHLLDQLAAIFP----DMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 24 sKR~Rcssssp~rf~~p~~~~~~ll~~L~~lFP----~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
+=|.||- .++|.||.. +.+...|..+.. .++++.+..+...|+.|+-.||..|..+..
T Consensus 676 tIrSRC~---~i~F~~ls~--~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~ 737 (846)
T PRK04132 676 PIQSRCA---IFRFRPLRD--EDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAA 737 (846)
T ss_pred HHhhhce---EEeCCCCCH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3467884 678888632 466677776543 378999999999999999999999877543
No 242
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=29.11 E-value=3.1e+02 Score=22.24 Aligned_cols=88 Identities=11% Similarity=0.194 Sum_probs=61.7
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 143 REMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQE 222 (286)
Q Consensus 143 ~EM~sAsd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E 222 (286)
+-.+.|+|+++.+.-..++-.+.+.|-... +.....-..|.+..++-+..|+.+-..++.+|. .-.+++..++
T Consensus 15 k~~~~a~~~~e~~~~l~~m~~~a~~ak~~~--P~~~~~d~~~~~~Y~~Gl~~li~~id~a~~~~~-----~G~l~~AK~~ 87 (103)
T PF07361_consen 15 KQAAKADDAAEMKTALDKMRAAAEDAKQGK--PPKLEGDSAEVKDYQEGLDKLIDQIDKAEALAE-----AGKLDEAKAA 87 (103)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHHTTTS---GGGTTTSHHHHHHHHHHHHHHHHHHHHHHHHH-----TTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhhcC--CccccccchHHHHHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHH
Confidence 445689999999988777777777665543 322222344667788888888888888777664 3456666778
Q ss_pred HHHHHHHHHHHHHHH
Q 023202 223 LHHLKQLVSQYQEQL 237 (286)
Q Consensus 223 ~~~lkqlv~qyqeq~ 237 (286)
+..|..+-.+|-+..
T Consensus 88 l~~l~~lR~eyHkk~ 102 (103)
T PF07361_consen 88 LKKLDDLRKEYHKKF 102 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhc
Confidence 888888888887654
No 243
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=28.89 E-value=9.5e+02 Score=27.75 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=56.3
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHH-HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 023202 146 MSSSNIDDARARASRALEILEKSICA-RASAEAAQSFHQENKMLKEQVEALIQENMILK--------RAVSIQHERQKEY 216 (286)
Q Consensus 146 ~sAsd~dDARaRAsRvLEafEKsi~~-ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLK--------rAv~IQheR~~e~ 216 (286)
|.|+.++.-+.==+++-+.++.+-.. ...++....++++.+.+++.+..+-+--.+.. =|.+-=.+..++|
T Consensus 204 mkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql 283 (1074)
T KOG0250|consen 204 MKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQL 283 (1074)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544443333333333332211 11233344566666666666553333222222 2455556788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023202 217 EDRSQELHHLKQLVSQYQEQLRTLETSW 244 (286)
Q Consensus 217 e~~~~E~~~lkqlv~qyqeq~r~LE~~~ 244 (286)
.+...+..+.++-++.|++.++......
T Consensus 284 ~~~~~~i~~~qek~~~l~~ki~~~~~k~ 311 (1074)
T KOG0250|consen 284 NNQEEEIKKKQEKVDTLQEKIEEKQGKI 311 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999998888333
No 244
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=28.79 E-value=4.3e+02 Score=26.07 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023202 187 MLKEQVEALIQENMILKR 204 (286)
Q Consensus 187 ~lKeq~~~l~~eN~iLKr 204 (286)
.|-.+++.|.+.|.-||+
T Consensus 252 ~l~ge~~~Le~rN~~LK~ 269 (294)
T KOG4571|consen 252 ALLGELEGLEKRNEELKD 269 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555543
No 245
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.60 E-value=2.1e+02 Score=23.78 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHHHHhhh
Q 023202 220 SQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAEH 273 (286)
Q Consensus 220 ~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL~qa~~ 273 (286)
..++..||+.+.+.-|.=.+|. ..|..|+-+|.+..+
T Consensus 21 ~~~~~~LK~~~~~l~EEN~~L~-----------------~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 21 LEELEELKKQLQELLEENARLR-----------------IENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhc
Confidence 4455555666666556666666 666666666665543
No 246
>PRK09087 hypothetical protein; Validated
Probab=28.47 E-value=54 Score=29.47 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=43.5
Q ss_pred cccccCCCCCCCCCCCCCCccchHHHHHhhC----CCCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 25 KRIRCSSSSPVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 25 KR~Rcssssp~rf~~p~~~~~~ll~~L~~lF----P~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
=|.||...-.+++.+|. .++...-|+..| -.+++++++-.++.++.|+-+++.-|+.|..
T Consensus 138 L~SRl~~gl~~~l~~pd--~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~ 201 (226)
T PRK09087 138 LKSRLKAATVVEIGEPD--DALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDR 201 (226)
T ss_pred HHHHHhCCceeecCCCC--HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 35577655556666653 244555565555 3689999999999999999999998888743
No 247
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.43 E-value=6.4e+02 Score=25.62 Aligned_cols=110 Identities=19% Similarity=0.186 Sum_probs=58.6
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 023202 146 MSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYED------- 218 (286)
Q Consensus 146 ~sAsd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~------- 218 (286)
+.....++-|.|+-..++-+-+-...-...+ +.+..-...|++.+++|-++-..|+....|-...-.|..+
T Consensus 211 visa~~eklR~r~eeeme~~~aeq~slkRt~--EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~ 288 (365)
T KOG2391|consen 211 VISAVREKLRRRREEEMERLQAEQESLKRTE--EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEA 288 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcC
Confidence 3345677888888877776544333322111 1233333444444555555555555555554443333111
Q ss_pred ------HHHHHHHHHHHHHHHHH------HHHHHhhhhhHHHHHHhhhhcc
Q 023202 219 ------RSQELHHLKQLVSQYQE------QLRTLETSWRLMTLMFDLVLSN 257 (286)
Q Consensus 219 ------~~~E~~~lkqlv~qyqe------q~r~LE~~~~~~~~~~~~~~~~ 257 (286)
..-+.---||+|.-|.+ -|+.|+.++|+--+-||-.|.+
T Consensus 289 ~~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~ 339 (365)
T KOG2391|consen 289 LDIDEAIECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVIDLDQYLRH 339 (365)
T ss_pred CCchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHH
Confidence 11223345788888754 4567888888877777765543
No 248
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.39 E-value=3.8e+02 Score=22.99 Aligned_cols=64 Identities=16% Similarity=0.284 Sum_probs=32.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+.+|++-|..|..+|+.+...-.-+|.++..=+.+....+..++.++.|-.=+.+..+.+++..
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555455544444444444444444444444444443
No 249
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=28.37 E-value=62 Score=29.69 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhhh
Q 023202 61 QILDRALEECGDDLDSAIRSLNELR 85 (286)
Q Consensus 61 q~le~aLe~cGndlDsAIksL~~L~ 85 (286)
+-+.++|++||.++.+..|.||-.|
T Consensus 145 EhIqrvl~e~~~NiSeTARrL~MHR 169 (182)
T COG4567 145 EHIQRVLEECEGNISETARRLNMHR 169 (182)
T ss_pred HHHHHHHHHhCCCHHHHHHHhhhhH
Confidence 4689999999999999999998653
No 250
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=28.08 E-value=4.9e+02 Score=28.49 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=13.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHhh
Q 023202 62 ILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 62 ~le~aLe~cGndlDsAIksL~~ 83 (286)
.|-..|+++-..|+.+-.-|.+
T Consensus 283 ~L~~~L~e~Q~qLe~a~~als~ 304 (717)
T PF09730_consen 283 SLLSNLQESQKQLEHAQGALSE 304 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777665544443
No 251
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=28.06 E-value=5.9e+02 Score=25.05 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=47.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQ-------HERQKE--------------YEDRSQELHHLKQLVSQYQEQ 236 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQ-------heR~~e--------------~e~~~~E~~~lkqlv~qyqeq 236 (286)
.+.++.......+++..+.++..-|+.|+.=- |.|... +.....|+++|+.-+...+++
T Consensus 260 k~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~ 339 (384)
T PF03148_consen 260 KNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEK 339 (384)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666667777777766422 333221 123458999999999999999
Q ss_pred HHHHhhhhhHH
Q 023202 237 LRTLETSWRLM 247 (286)
Q Consensus 237 ~r~LE~~~~~~ 247 (286)
|...|++++..
T Consensus 340 L~~a~~~l~~L 350 (384)
T PF03148_consen 340 LDEAEASLQKL 350 (384)
T ss_pred HHHHHHHHHHH
Confidence 99999877654
No 252
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.91 E-value=1.1e+03 Score=27.93 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHH
Q 023202 184 ENKMLKEQVEALIQENMILKRAVSI--QHERQKEYEDRSQELHHL-----K-QLVSQYQEQLRTL 240 (286)
Q Consensus 184 En~~lKeq~~~l~~eN~iLKrAv~I--QheR~~e~e~~~~E~~~l-----k-qlv~qyqeq~r~L 240 (286)
+..-|+.|+..+-. .++|+.+-+ +.++++..++..+|+..+ | +.+.+||-+|.++
T Consensus 835 ~~~~l~~~i~~~E~--~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i 897 (1293)
T KOG0996|consen 835 LIEYLESQIAELEA--AVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEI 897 (1293)
T ss_pred HHHHHHHHHHHHHH--HhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 33444444444333 366666533 344455566666777776 4 7777777777654
No 253
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.91 E-value=7.2e+02 Score=26.02 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=42.2
Q ss_pred ccccCCCCCCCCCCCCCCccchHHHHHhhC----CCCCHHHHHHHHHHcCCCHHHHHHHHhhhh
Q 023202 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELR 85 (286)
Q Consensus 26 R~Rcssssp~rf~~p~~~~~~ll~~L~~lF----P~mD~q~le~aLe~cGndlDsAIksL~~L~ 85 (286)
|.||- .++|.++.. +.+...|..++ -.+++..++.+.+.+|.|+..|+..|..+.
T Consensus 167 ~SRc~---~~~f~~Ls~--~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 167 LSRCI---QLHLKHISQ--ADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred HHhee---eEEeCCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 66783 567777533 45666777654 368999999999999999999999998764
No 254
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.82 E-value=7.8e+02 Score=28.57 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 193 EALIQENMILKRAVSIQHERQKEYEDRS 220 (286)
Q Consensus 193 ~~l~~eN~iLKrAv~IQheR~~e~e~~~ 220 (286)
++-.++|..+.+-+..||.+.+++++..
T Consensus 460 ~rq~~e~e~~~q~ls~~~Q~~~et~el~ 487 (1195)
T KOG4643|consen 460 SRQSLENEELDQLLSLQDQLEAETEELL 487 (1195)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777777888888777776543
No 255
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.79 E-value=6e+02 Score=25.08 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=17.4
Q ss_pred ChhhHHHHHHHHHhcCCChHHHHHH
Q 023202 133 DGPEWVELFVREMMSSSNIDDARAR 157 (286)
Q Consensus 133 ~g~eWVEl~V~EM~sAsd~dDARaR 157 (286)
|=-|=||-+|=.+.+-.|+....++
T Consensus 97 dYLE~vEdii~nL~~~~d~~~te~~ 121 (309)
T TIGR00570 97 DYLEEVEDIVYNLTNNIDLENTKKK 121 (309)
T ss_pred HHHHHHHHHHHHhhcCCcHHHHHHH
Confidence 3445688888888888887655544
No 256
>PRK01156 chromosome segregation protein; Provisional
Probab=27.78 E-value=7.8e+02 Score=26.35 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=13.6
Q ss_pred CCCCCCccchHHHHHh-hCCC
Q 023202 38 SPPRSSRSHLLDQLAA-IFPD 57 (286)
Q Consensus 38 ~~p~~~~~~ll~~L~~-lFP~ 57 (286)
++-++|.+++++++.- +|..
T Consensus 30 G~NGsGKSsileAI~~aL~g~ 50 (895)
T PRK01156 30 GKNGAGKSSIVDAIRFALFTD 50 (895)
T ss_pred CCCCCCHHHHHHHHHHHHcCC
Confidence 3345668889999874 7754
No 257
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=27.60 E-value=1.8e+02 Score=24.05 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHH---HHHhhhhccchhhH
Q 023202 223 LHHLKQLVSQYQEQLRTLETSWRLMT---LMFDLVLSNQVNNY 262 (286)
Q Consensus 223 ~~~lkqlv~qyqeq~r~LE~~~~~~~---~~~~~~~~~~~~Ny 262 (286)
|.+|+.+-+.+-.|+..|+..+..|. -....|+.|..|-.
T Consensus 16 L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~ 58 (103)
T PF08654_consen 16 LKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVF 58 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHH
Confidence 45555666788888999988777775 46778888887543
No 258
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=27.50 E-value=3.2e+02 Score=21.86 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 215 EYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 215 e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
++..+..+++..-+-+.+-.++|..||
T Consensus 53 ~l~~k~~~l~~~l~~Id~Ie~~V~~LE 79 (99)
T PF10046_consen 53 DLNQKYEELQPYLQQIDQIEEQVTELE 79 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455555555555
No 259
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.48 E-value=7.1e+02 Score=25.77 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=38.4
Q ss_pred CCCCCCCCCccchHHHHHhhC----CCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcC
Q 023202 35 VRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELRLG 87 (286)
Q Consensus 35 ~rf~~p~~~~~~ll~~L~~lF----P~mD~q~le~aLe~cGndlDsAIksL~~L~L~ 87 (286)
++|.++. ...+...|..++ =.+++..++.+.+.||.|+..|+.-|..|.+.
T Consensus 174 i~f~~l~--~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y 228 (585)
T PRK14950 174 FDFHRHS--VADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATT 228 (585)
T ss_pred eeCCCCC--HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4565532 245666666653 24899999999999999999999999988663
No 260
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=27.46 E-value=1.1e+02 Score=27.02 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 176 EAAQSFHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 176 e~~~~~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
...+.+.+|+.+|..||+.|..||.-+.+
T Consensus 74 ~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 74 QQKHELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 261
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.43 E-value=2.5e+02 Score=20.45 Aligned_cols=23 Identities=43% Similarity=0.413 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023202 182 HQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 182 ~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
......|..++..|..+|..|+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777764
No 262
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=27.36 E-value=4.9e+02 Score=23.90 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHH
Q 023202 151 IDDARARASRALEI 164 (286)
Q Consensus 151 ~dDARaRAsRvLEa 164 (286)
+.+||.+|.++++.
T Consensus 46 l~~Ar~eA~~Ii~~ 59 (255)
T TIGR03825 46 LEKAEAEAAQIIEQ 59 (255)
T ss_pred HHHHHHHHHHHHHH
Confidence 56788888888764
No 263
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=27.09 E-value=3.9e+02 Score=26.47 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=35.2
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 172 RASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 172 ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~ 239 (286)
|--.+.+++++.+-+.||+|.+...+--+||-+-+ ..+.||.+.++--|..|..|..-
T Consensus 104 rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rl----------A~kEQEmqe~~sqi~~lK~qq~P 161 (330)
T KOG2991|consen 104 RLLSDDITNLKESEEKLKQQQQEAARRENILVMRL----------ATKEQEMQECTSQIQYLKQQQQP 161 (330)
T ss_pred chhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhCc
Confidence 33455677888888888888877776655654433 33455555555555555444443
No 264
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=27.03 E-value=2.8e+02 Score=27.58 Aligned_cols=42 Identities=31% Similarity=0.503 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 192 VEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQY 233 (286)
Q Consensus 192 ~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qy 233 (286)
.-.|.+||.-||+-++....+...|++..+|...|+.+..+|
T Consensus 59 y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~~~ 100 (337)
T PRK14872 59 ALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILSPY 100 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344555555555555555555555666566665555555444
No 265
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.95 E-value=5.6e+02 Score=27.21 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhh
Q 023202 182 HQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNN 261 (286)
Q Consensus 182 ~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~N 261 (286)
.+|...|++++..+..+-.-+. .+++....++.++..-+.+.+....+||..+++.+-++|| |.+-.+|
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~----------~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~l-L~d~e~n 395 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELE----------AEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVEL-LPDAEEN 395 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHH
Confidence 4455555555555544433222 2222333445555555666666677777777777777777 4443444
Q ss_pred H
Q 023202 262 Y 262 (286)
Q Consensus 262 y 262 (286)
-
T Consensus 396 i 396 (594)
T PF05667_consen 396 I 396 (594)
T ss_pred H
Confidence 3
No 266
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=26.89 E-value=76 Score=26.82 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 182 HQENKMLKEQVEALIQENMILKRA 205 (286)
Q Consensus 182 ~kEn~~lKeq~~~l~~eN~iLKrA 205 (286)
..|...||++...|.+||+.||==
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklK 94 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLK 94 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888888999999999843
No 267
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=26.84 E-value=5.2e+02 Score=26.03 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 023202 224 HHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 224 ~~lkqlv~qyqeq~r~LE 241 (286)
..|.+-+.+.+++|..|+
T Consensus 148 ~~~~~~~~~~~~~l~~l~ 165 (525)
T TIGR02231 148 REAERRIRELEKQLSELQ 165 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444555555555555
No 268
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=26.69 E-value=9.8e+02 Score=27.14 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023202 221 QELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 221 ~E~~~lkqlv~qyqeq~r~ 239 (286)
+++..+...+.+.+++...
T Consensus 469 ~~~~~~~~~~~~a~~~~~~ 487 (1201)
T PF12128_consen 469 EQLEQADKRLEQAQEQQNQ 487 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333
No 269
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=26.52 E-value=9.8e+02 Score=27.12 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023202 185 NKMLKEQVEALIQENMILKRAVSIQH-------ERQKEYEDRS-QELHHLKQLVSQYQEQLRTLETSWRLMT 248 (286)
Q Consensus 185 n~~lKeq~~~l~~eN~iLKrAv~IQh-------eR~~e~e~~~-~E~~~lkqlv~qyqeq~r~LE~~~~~~~ 248 (286)
....++....+..+-.-++..+.... ++...|++.. .++...-.-+.+|+.++..|+..+..+|
T Consensus 301 ~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt 372 (1201)
T PF12128_consen 301 EDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLT 372 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555544 4445554322 2222222223455555555554444433
No 270
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=26.29 E-value=3.1e+02 Score=30.10 Aligned_cols=81 Identities=27% Similarity=0.238 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHhhhhccc
Q 023202 182 HQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQ---LRTLETSWRLMTLMFDLVLSNQ 258 (286)
Q Consensus 182 ~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq---~r~LE~~~~~~~~~~~~~~~~~ 258 (286)
+|.+..+|++++.|..|- +..|-.=|+++|....|...|++++-+-... .|.|-.++--|---.==+||..
T Consensus 225 ~K~~vs~~e~i~~LQeE~------l~tQ~kYQreLErlEKENkeLr~lll~kd~k~i~~kklKkSLIDMYSEVLD~Ls~Y 298 (980)
T KOG0447|consen 225 QKRKVSDKEKIDQLQEEL------LHTQLKYQRILERLEKENKELRKLVLQKDDKGIHHRKLKKSLIDMYSEVLDVLSDY 298 (980)
T ss_pred HhhhhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566777777777776663 2334444556666666666667666554332 2333322222211111134555
Q ss_pred hhhHHHHHHH
Q 023202 259 VNNYALTMHL 268 (286)
Q Consensus 259 ~~NyaL~~hL 268 (286)
..-|...-||
T Consensus 299 D~sYnt~DhL 308 (980)
T KOG0447|consen 299 DASYNTQDHL 308 (980)
T ss_pred cccccccccC
Confidence 6666666665
No 271
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.29 E-value=1.1e+02 Score=23.59 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 023202 221 QELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 221 ~E~~~lkqlv~qyqeq~r~LE 241 (286)
.|+.-||.-+...++++..||
T Consensus 14 EEVevLK~~I~eL~~~n~~Le 34 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLE 34 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356777777888888888888
No 272
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=26.19 E-value=2.5e+02 Score=25.10 Aligned_cols=20 Identities=5% Similarity=0.072 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 023202 222 ELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 222 E~~~lkqlv~qyqeq~r~LE 241 (286)
++..++.-+...+.++..++
T Consensus 110 ~~~~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 110 AVEAAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444
No 273
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.10 E-value=4.2e+02 Score=22.73 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=51.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSW 244 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~ 244 (286)
..+..++..+-+++..|.+-|..|-.=|..-.++.++......+.....+-+.+++.+|..||..+
T Consensus 24 K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeel 89 (143)
T PF12718_consen 24 KQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEEL 89 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHH
Confidence 346667777888888899999998888888888888888877777777777778888888877433
No 274
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=26.00 E-value=92 Score=28.19 Aligned_cols=50 Identities=32% Similarity=0.444 Sum_probs=36.4
Q ss_pred CCCCCCCCCCccchHHHHHhhCC----CCCHHHHHHHHHHcCCCHHHHHHHHhhhh
Q 023202 34 PVRFSPPRSSRSHLLDQLAAIFP----DMDNQILDRALEECGDDLDSAIRSLNELR 85 (286)
Q Consensus 34 p~rf~~p~~~~~~ll~~L~~lFP----~mD~q~le~aLe~cGndlDsAIksL~~L~ 85 (286)
.++|.||.. ..+...|..++. .+++..++...+.||.|+..++..|..+.
T Consensus 178 ~v~~~~~~~--~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 178 PLFFRAPTD--DELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA 231 (337)
T ss_pred EEEecCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 356666532 455555655433 58899999999999999999998887644
No 275
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=25.90 E-value=1.1e+02 Score=27.14 Aligned_cols=57 Identities=28% Similarity=0.284 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023202 192 VEALIQENMILKRAVSIQHERQKEYEDR-SQELHHLKQLVSQYQEQLRTLETSWRLMT 248 (286)
Q Consensus 192 ~~~l~~eN~iLKrAv~IQheR~~e~e~~-~~E~~~lkqlv~qyqeq~r~LE~~~~~~~ 248 (286)
.++|+.+-.-|.|+++.++-|.++-... ..-.+.|.+=+.+|+|-.|+|.+-.+-..
T Consensus 72 aEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erRL~~mi~~~e 129 (173)
T PF07445_consen 72 AEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERRLLAMIQERE 129 (173)
T ss_pred HHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888999999999988877552 24566777888999999999985444433
No 276
>PRK00295 hypothetical protein; Provisional
Probab=25.67 E-value=2.7e+02 Score=21.26 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHH
Q 023202 223 LHHLKQLVSQYQEQLRTLETSWRLM 247 (286)
Q Consensus 223 ~~~lkqlv~qyqeq~r~LE~~~~~~ 247 (286)
+..|..+|.+=|.+|..|+..++.+
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888888888444443
No 277
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.52 E-value=1.2e+02 Score=23.91 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 023202 219 RSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 219 ~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
-.+.+++|-+-....+|+|.+||
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE 62 (75)
T TIGR02976 40 DQALLQELYAKADRLEERIDTLE 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777888999999999
No 278
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=25.44 E-value=8.3e+02 Score=25.89 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023202 219 RSQELHHLKQLVSQYQEQLRTLETSW 244 (286)
Q Consensus 219 ~~~E~~~lkqlv~qyqeq~r~LE~~~ 244 (286)
..+.+.+|..-+.+++.|+..||+.+
T Consensus 383 ~~~~l~~le~~l~~~~~~~~~L~~~~ 408 (656)
T PRK06975 383 LDSQFAQLDGKLADAQSAQQALEQQY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888888888888554
No 279
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.29 E-value=1.9e+02 Score=21.05 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMIL 202 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iL 202 (286)
+++|...|+.+++.+..+|.-|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L 43 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEEL 43 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 280
>PRK14011 prefoldin subunit alpha; Provisional
Probab=25.28 E-value=1.1e+02 Score=26.57 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 023202 219 RSQELHHLKQLVSQYQEQLRTLETSWRLMTLM 250 (286)
Q Consensus 219 ~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~ 250 (286)
+++|++++--.+.+|++|+..|.+++...+.+
T Consensus 1 ~~~elq~~~~~l~~~~~qie~L~~si~~L~~a 32 (144)
T PRK14011 1 MNEELQNQFMALEVYNQQVQKLQEELSSIDMM 32 (144)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 281
>PHA02047 phage lambda Rz1-like protein
Probab=24.83 E-value=3.1e+02 Score=23.27 Aligned_cols=32 Identities=31% Similarity=0.328 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHER 212 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR 212 (286)
-|+|.+.|+.|++.+...-.-+-+.|.--|.|
T Consensus 32 ~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 32 AHEEAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888999999998876665555566555555
No 282
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=24.48 E-value=2.2e+02 Score=29.00 Aligned_cols=25 Identities=44% Similarity=0.582 Sum_probs=17.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLK 203 (286)
+-..+++||..||-++++| ||..||
T Consensus 40 EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 40 ENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred HhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 3345777788888888887 555554
No 283
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=24.46 E-value=8.2e+02 Score=25.51 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=8.2
Q ss_pred HHHHHHHhhhhhHHHHHH
Q 023202 234 QEQLRTLETSWRLMTLMF 251 (286)
Q Consensus 234 qeq~r~LE~~~~~~~~~~ 251 (286)
.||++.|+.+-.+++.-|
T Consensus 98 ~ek~~~l~~~~~~L~~~F 115 (475)
T PRK10361 98 DDKIRQMINSEQRLSEQF 115 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555554444444333
No 284
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=24.34 E-value=5.8e+02 Score=23.74 Aligned_cols=58 Identities=26% Similarity=0.492 Sum_probs=32.0
Q ss_pred HHhhHHHHHHH-------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKML-------KEQVEALIQENMILKRAV----SIQHERQKEYEDRSQELHHLKQLVSQYQE 235 (286)
Q Consensus 178 ~~~~~kEn~~l-------Keq~~~l~~eN~iLKrAv----~IQheR~~e~e~~~~E~~~lkqlv~qyqe 235 (286)
++.|+.||..| |.+...|..+|.-|++=| ++=..|-....++.+....|++.|..|.-
T Consensus 104 i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~ 172 (193)
T PF14662_consen 104 IETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRS 172 (193)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455555443 444445555666666655 22334455555666666777776666653
No 285
>PF08989 DUF1896: Domain of unknown function (DUF1896); InterPro: IPR015082 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 2APL_A.
Probab=24.30 E-value=1.6e+02 Score=26.16 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=25.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHH
Q 023202 148 SSNIDDARARASRALEILEKSICARASAEAAQSFHQ 183 (286)
Q Consensus 148 Asd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~k 183 (286)
+.|-+=-++||..+.++||.+|.+.-....++.+..
T Consensus 27 ~~d~~fI~~Rad~Aa~aYe~A~~~G~~~~~A~e~A~ 62 (144)
T PF08989_consen 27 AGDTEFIEERADMAAEAYEQAVRSGYSHDEAEEIAM 62 (144)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHHHT--HHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 445555688999999999999999888776554433
No 286
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=24.29 E-value=2.2e+02 Score=27.07 Aligned_cols=10 Identities=40% Similarity=0.554 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 023202 220 SQELHHLKQL 229 (286)
Q Consensus 220 ~~E~~~lkql 229 (286)
.+|.++||.+
T Consensus 96 ~~EN~~Lr~l 105 (284)
T COG1792 96 EEENKRLKEL 105 (284)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 287
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=24.15 E-value=6.7e+02 Score=24.39 Aligned_cols=19 Identities=5% Similarity=0.143 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhhhhH
Q 023202 228 QLVSQYQEQLRTLETSWRL 246 (286)
Q Consensus 228 qlv~qyqeq~r~LE~~~~~ 246 (286)
.+-.+|+.+|..|+.|+..
T Consensus 188 ~ak~~~~~~I~rL~~AL~I 206 (325)
T PRK15471 188 VAQEQKDLRIKQIQEALQY 206 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556777788888855443
No 288
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=24.13 E-value=1.1e+03 Score=26.68 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 218 DRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 218 ~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+...++..|...+..+..++..+|
T Consensus 443 ~~~~~~~~l~~~~~~~~~~~~~~~ 466 (1163)
T COG1196 443 ELNEELEELEEQLEELRDRLKELE 466 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 289
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.09 E-value=6.8e+02 Score=24.42 Aligned_cols=84 Identities=19% Similarity=0.318 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 155 RARASRALEILEKSICARASAE-AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQY 233 (286)
Q Consensus 155 RaRAsRvLEafEKsi~~ra~ae-~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qy 233 (286)
|..=.-|=|-|-|++...|-=+ ...++.-+..-||..|+.+-....-|+|=+. +..++++-..+...-|+--+..+
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~---eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR---EKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677788888888766532 2344556777777777777777666665442 22223322222333344445555
Q ss_pred HHHHHHHh
Q 023202 234 QEQLRTLE 241 (286)
Q Consensus 234 qeq~r~LE 241 (286)
+++|+..+
T Consensus 160 re~L~~rd 167 (302)
T PF09738_consen 160 REQLKQRD 167 (302)
T ss_pred HHHHHHHH
Confidence 55555554
No 290
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=23.62 E-value=1.1e+02 Score=29.85 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=40.9
Q ss_pred cccccCCCCCCCCCCCCCCccchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 25 KRIRCSSSSPVRFSPPRSSRSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 25 KR~Rcssssp~rf~~p~~~~~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
=|.||. .++|.|+. .+.....|...++..+...+..++.-||.+.-.|+.-+..
T Consensus 188 i~SRc~---~i~l~~l~--~~~i~~~L~~~~~~~~~~~~~~l~~~s~Gsp~~Al~ll~~ 241 (365)
T PRK07471 188 IRSRCR---KLRLRPLA--PEDVIDALAAAGPDLPDDPRAALAALAEGSVGRALRLAGG 241 (365)
T ss_pred hhccce---EEECCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 477784 67787763 3567778888888888777788888999999988877653
No 291
>PLN02939 transferase, transferring glycosyl groups
Probab=23.42 E-value=4.3e+02 Score=29.96 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=17.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q 023202 175 AEAAQSFHQENKMLKEQVEALIQEN 199 (286)
Q Consensus 175 ae~~~~~~kEn~~lKeq~~~l~~eN 199 (286)
.++...+++||..||+-++.|..+-
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAEL 249 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445667888888888888776553
No 292
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=23.39 E-value=7.3e+02 Score=24.52 Aligned_cols=22 Identities=41% Similarity=0.431 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHcCCCHHHHHHH
Q 023202 59 DNQILDRALEECGDDLDSAIRS 80 (286)
Q Consensus 59 D~q~le~aLe~cGndlDsAIks 80 (286)
|-..+-+.||+-+.||.-|.+.
T Consensus 63 Didavt~lLeEkerDLelaA~i 84 (306)
T PF04849_consen 63 DIDAVTRLLEEKERDLELAARI 84 (306)
T ss_pred hHHHHHHHHHHHhhhHHHHHHH
Confidence 5567889999999999888765
No 293
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=23.38 E-value=1.1e+02 Score=32.39 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=44.6
Q ss_pred ccccCCCCCCCCCCCCCCccchHHHHHhhC---C-CCCHHHHHHHHHHcCCCHHHHHHHHhhhhcCc
Q 023202 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIF---P-DMDNQILDRALEECGDDLDSAIRSLNELRLGS 88 (286)
Q Consensus 26 R~Rcssssp~rf~~p~~~~~~ll~~L~~lF---P-~mD~q~le~aLe~cGndlDsAIksL~~L~L~s 88 (286)
|.||- .++|.++.. ..+...|..++ . .+++..++.+.+.||.|+..|+.-|..|....
T Consensus 167 ~SRcq---~ieF~~Ls~--~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~ 228 (605)
T PRK05896 167 ISRCQ---RYNFKKLNN--SELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFK 228 (605)
T ss_pred Hhhhh---hcccCCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhc
Confidence 55774 567777533 45666777654 3 58999999999999999999999999976643
No 294
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.36 E-value=6e+02 Score=24.19 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 023202 160 RALEILEKSICARASAEA---AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDR-------SQELHHLKQL 229 (286)
Q Consensus 160 RvLEafEKsi~~ra~ae~---~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~-------~~E~~~lkql 229 (286)
-+|+.+|+-+.----+++ ...++.++..|...++.|-.+-.--+.-+..++.......+. .........+
T Consensus 161 vLL~~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~ 240 (259)
T PF08657_consen 161 VLLRGAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDED 240 (259)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHH
Confidence 678888887766543332 233445555555555555554444444444444443333211 0011123345
Q ss_pred HHHHHHHHHHHhhhhh
Q 023202 230 VSQYQEQLRTLETSWR 245 (286)
Q Consensus 230 v~qyqeq~r~LE~~~~ 245 (286)
+.+=.+.||+||+-+|
T Consensus 241 I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 241 IRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666777888884443
No 295
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=23.20 E-value=3.4e+02 Score=21.45 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHh
Q 023202 227 KQLVSQYQEQLRTLE 241 (286)
Q Consensus 227 kqlv~qyqeq~r~LE 241 (286)
|.=+.--+.+||.|.
T Consensus 63 K~DLd~i~krir~lk 77 (88)
T PF10241_consen 63 KKDLDYIFKRIRSLK 77 (88)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 296
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=23.19 E-value=27 Score=36.07 Aligned_cols=55 Identities=36% Similarity=0.505 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhh
Q 023202 190 EQVEALIQENMILKRAVSIQHERQKEYEDRS--QELHHLKQLVSQYQEQLRTLETSWR 245 (286)
Q Consensus 190 eq~~~l~~eN~iLKrAv~IQheR~~e~e~~~--~E~~~lkqlv~qyqeq~r~LE~~~~ 245 (286)
.+++..-+|...||.=+.+=|.+..|||-+- || ++...|+.|||..|..=|.-||
T Consensus 369 ~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QE-qqt~Kll~qyq~RLedSE~RLr 425 (495)
T PF12004_consen 369 KEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQE-QQTQKLLLQYQARLEDSEERLR 425 (495)
T ss_dssp ----------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhhhHHHHH
Confidence 3455577788889988999999999998743 44 3557789999977665554444
No 297
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.03 E-value=5.5e+02 Score=28.80 Aligned_cols=93 Identities=26% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q 023202 160 RALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYE---------DRSQELHHLKQLV 230 (286)
Q Consensus 160 RvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e---------~~~~E~~~lkqlv 230 (286)
|++--+|.+|.---+--..-+++-|+.-- +.-|-.||.-|+|=++|-+.+.+|.| +-+=||-.|+-|=
T Consensus 360 RLitEvE~cislLPav~g~tniq~EIALA---~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN 436 (861)
T PF15254_consen 360 RLITEVEACISLLPAVSGSTNIQVEIALA---MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLN 436 (861)
T ss_pred HHHHHHHHHHHhhhhhhccccchhhhHhh---hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHH
Q 023202 231 SQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALT 265 (286)
Q Consensus 231 ~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~ 265 (286)
--+|.||.....++.+.. ..|--|.
T Consensus 437 ~~Lq~ql~es~k~~e~lq----------~kneell 461 (861)
T PF15254_consen 437 MSLQNQLQESLKSQELLQ----------SKNEELL 461 (861)
T ss_pred HHHHHHHHHHHHhHHHHH----------HhHHHHH
No 298
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.01 E-value=1.5e+02 Score=23.56 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 023202 220 SQELHHLKQLVSQYQEQLRTLET 242 (286)
Q Consensus 220 ~~E~~~lkqlv~qyqeq~r~LE~ 242 (286)
.+.|++|-+-....+|+|.|||+
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777788889999999993
No 299
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=23.00 E-value=7.4e+02 Score=25.45 Aligned_cols=60 Identities=28% Similarity=0.396 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 182 HQENKMLKEQVE--ALIQENMI-LKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 182 ~kEn~~lKeq~~--~l~~eN~i-LKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
..|...+..|.. .+.+||.. +++-..++-.-+.++....+++..+.+-++..|++++++=
T Consensus 62 ~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is 124 (391)
T COG2959 62 TQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATIS 124 (391)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 334444444444 34444444 4555555555555555555555555555555566665554
No 300
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.96 E-value=4.2e+02 Score=28.65 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=12.5
Q ss_pred HHHHHcCCCHHHHHHHHhh
Q 023202 65 RALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 65 ~aLe~cGndlDsAIksL~~ 83 (286)
+.|.+.++-++.-||+|..
T Consensus 496 ~~l~~~~~sF~~~Ik~lL~ 514 (717)
T PF10168_consen 496 KPLAESPPSFEKHIKSLLQ 514 (717)
T ss_pred cccccccchHHHHHHHHhc
Confidence 3445567778888887643
No 301
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=22.95 E-value=1.4e+02 Score=28.70 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=32.6
Q ss_pred ccccccCCCCCCCCCCCCCCccchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 24 SKRIRCSSSSPVRFSPPRSSRSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 24 sKR~Rcssssp~rf~~p~~~~~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
+=|+||- .++|.+|.. +.....|..-+ ++++.-+..++.-+|++...|++-+.
T Consensus 154 TIrSRCq---~~~~~~~~~--~~~~~~L~~~~-~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 154 TLRSRCR---LHYLAPPPE--QYALTWLSREV-TMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred HHHhccc---cccCCCCCH--HHHHHHHHHcc-CCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 4588995 566776522 33444565544 36666666777777777777765553
No 302
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=22.85 E-value=80 Score=28.18 Aligned_cols=27 Identities=26% Similarity=0.683 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHcC--CCHHHHHHHHhhhh
Q 023202 59 DNQILDRALEECG--DDLDSAIRSLNELR 85 (286)
Q Consensus 59 D~q~le~aLe~cG--ndlDsAIksL~~L~ 85 (286)
+|.|+|.+|.+|- |||-.|||-|.-+.
T Consensus 83 ~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 83 SPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5899999999995 89999999987764
No 303
>PRK04406 hypothetical protein; Provisional
Probab=22.73 E-value=3.8e+02 Score=20.95 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHH
Q 023202 222 ELHHLKQLVSQYQEQLRTLETSWRLM 247 (286)
Q Consensus 222 E~~~lkqlv~qyqeq~r~LE~~~~~~ 247 (286)
-+..|..+|.+-|.+|..|+..++++
T Consensus 26 tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 26 TIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788889999999888555444
No 304
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=22.73 E-value=9.3e+02 Score=26.45 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 182 HQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDR 219 (286)
Q Consensus 182 ~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~ 219 (286)
++++..|.+....|-.++.=||-.+..+|-+...++++
T Consensus 495 ~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq 532 (698)
T KOG0978|consen 495 NQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQ 532 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666665543
No 305
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=22.68 E-value=4e+02 Score=29.35 Aligned_cols=56 Identities=30% Similarity=0.417 Sum_probs=37.2
Q ss_pred hHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 174 SAEAAQSFHQENK----MLKEQVEALIQENMILKRAVS------IQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 174 ~ae~~~~~~kEn~----~lKeq~~~l~~eN~iLKrAv~------IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
..+.++.+|.|.. ..+..||+|-+||..||+-|. |.|.|.| |-|++-|-|=+..|-
T Consensus 231 ~~e~i~~LQeE~l~tQ~kYQreLErlEKENkeLr~lll~kd~k~i~~kklK------------kSLIDMYSEVLD~Ls 296 (980)
T KOG0447|consen 231 DKEKIDQLQEELLHTQLKYQRILERLEKENKELRKLVLQKDDKGIHHRKLK------------KSLIDMYSEVLDVLS 296 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccchhhHHHHHH------------HHHHHHHHHHHHHHh
Confidence 3445567777753 234558999999999996653 3333322 357888888888775
No 306
>smart00338 BRLZ basic region leucin zipper.
Probab=22.39 E-value=3.1e+02 Score=19.90 Aligned_cols=24 Identities=8% Similarity=0.284 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 218 DRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 218 ~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+...+++.|.......+.++..|+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777777777777777
No 307
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.17 E-value=88 Score=30.35 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=40.5
Q ss_pred CCCCCCCCCCccchHHHHHhhC----CCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcC
Q 023202 34 PVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELRLG 87 (286)
Q Consensus 34 p~rf~~p~~~~~~ll~~L~~lF----P~mD~q~le~aLe~cGndlDsAIksL~~L~L~ 87 (286)
.++|.++.. +.+...|..++ -.+++..++...+.+|.|+..|+.-|..|.+-
T Consensus 180 ~v~f~~l~~--~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 180 RFNFKRIPL--EEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAF 235 (397)
T ss_pred HhhcCCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 466777532 45566666665 46999999999999999999999999987653
No 308
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=22.15 E-value=4.2e+02 Score=28.02 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 023202 151 IDDARARASRALEILEKSICA 171 (286)
Q Consensus 151 ~dDARaRAsRvLEafEKsi~~ 171 (286)
+.....+--+-++.+|.-|..
T Consensus 515 Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 515 LERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455666667777766654
No 309
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=22.04 E-value=30 Score=36.28 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023202 215 EYEDRSQELHHLKQLVSQYQEQLRTLETSW 244 (286)
Q Consensus 215 e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~ 244 (286)
.+|+..+-...++--+..|..||-.||..+
T Consensus 350 ~LEeel~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 350 MLEEELKKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444555555555555443
No 310
>PRK00846 hypothetical protein; Provisional
Probab=21.93 E-value=4.2e+02 Score=21.16 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHH
Q 023202 223 LHHLKQLVSQYQEQLRTLETSWRLM 247 (286)
Q Consensus 223 ~~~lkqlv~qyqeq~r~LE~~~~~~ 247 (286)
+..|.+.|.+.|.+|..|...++++
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRHL 53 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888444433
No 311
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=21.90 E-value=6e+02 Score=23.69 Aligned_cols=55 Identities=35% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhH
Q 023202 188 LKEQVEALIQENMILKR-----AVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNY 262 (286)
Q Consensus 188 lKeq~~~l~~eN~iLKr-----Av~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~Ny 262 (286)
|+.++++|..|-..+++ +..+.+||..=.++ |.=|-.||.|| +-||
T Consensus 136 l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eE--------KekVi~YQkQL---------------------Q~nY 186 (202)
T PF06818_consen 136 LRREVERLRAELQRERQRREEQRSSFEQERRTWQEE--------KEKVIRYQKQL---------------------QQNY 186 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---------------------HHHH
Q ss_pred HHHHHHHHh
Q 023202 263 ALTMHLKQA 271 (286)
Q Consensus 263 aL~~hL~qa 271 (286)
.=.||-.++
T Consensus 187 vqMy~rn~~ 195 (202)
T PF06818_consen 187 VQMYQRNQA 195 (202)
T ss_pred HHHHHHHHH
No 312
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=21.82 E-value=2e+02 Score=26.80 Aligned_cols=12 Identities=50% Similarity=0.612 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHh
Q 023202 230 VSQYQEQLRTLE 241 (286)
Q Consensus 230 v~qyqeq~r~LE 241 (286)
.+-|-||+-.||
T Consensus 103 daf~Ke~larlE 114 (192)
T KOG4083|consen 103 DAFYKEQLARLE 114 (192)
T ss_pred HHHHHHHHHHHH
Confidence 444555555555
No 313
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=21.81 E-value=1.3e+03 Score=28.30 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 023202 149 SNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAV-SIQHERQKEYEDRSQELHHLK 227 (286)
Q Consensus 149 sd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv-~IQheR~~e~e~~~~E~~~lk 227 (286)
..+++=|.|.--+++.++- +.......+..|+..||+.+...-+.+.=|+.-+ ..|..+++..+....+.+.+.
T Consensus 1285 ~e~~~wK~R~q~L~~k~k~-----~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt 1359 (1822)
T KOG4674|consen 1285 EENDRWKQRNQDLLEKYKD-----SDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLT 1359 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999888888653 2233344455566666666664444444443322 344666667777777888877
Q ss_pred HHHHHHHHHHHHHhhhhhHHH
Q 023202 228 QLVSQYQEQLRTLETSWRLMT 248 (286)
Q Consensus 228 qlv~qyqeq~r~LE~~~~~~~ 248 (286)
.-+.|...-...|+++|+-..
T Consensus 1360 ~~~~ql~~~~~rL~~~~~e~~ 1380 (1822)
T KOG4674|consen 1360 KELEQLEDLKTRLAAALSEKN 1380 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888887543
No 314
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=21.71 E-value=1.2e+02 Score=30.47 Aligned_cols=58 Identities=29% Similarity=0.424 Sum_probs=44.6
Q ss_pred ccccCCCCCCCCCCCCCCccchHHHHHhhC----CCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcCc
Q 023202 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELRLGS 88 (286)
Q Consensus 26 R~Rcssssp~rf~~p~~~~~~ll~~L~~lF----P~mD~q~le~aLe~cGndlDsAIksL~~L~L~s 88 (286)
..||+ -.||.+- ..+..++.|+.|= =+||+..+..+++-||+||-.||--|-+|.+..
T Consensus 177 ~SRC~---KfrFk~L--~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~g 238 (346)
T KOG0989|consen 177 VSRCQ---KFRFKKL--KDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLG 238 (346)
T ss_pred HhhHH---HhcCCCc--chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccC
Confidence 44664 3567663 2345677777764 479999999999999999999999999998843
No 315
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=21.66 E-value=6.8e+02 Score=23.52 Aligned_cols=88 Identities=22% Similarity=0.352 Sum_probs=60.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 149 SNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLK-----------EQVEALIQENMILKRAVSIQHERQKEYE 217 (286)
Q Consensus 149 sd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lK-----------eq~~~l~~eN~iLKrAv~IQheR~~e~e 217 (286)
..+.+||.++.-+-.+|+.+|..|+.. |+|...|= +..-.|.+.-..+.+++.-=.+...+.|
T Consensus 46 ~~l~~~r~~~~~aK~~Y~~ai~~Rs~s------QrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE 119 (207)
T PF05546_consen 46 DELEAARQEVREAKAAYDDAIQQRSSS------QREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAE 119 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 467899999999999999999999876 44444332 2345577777777777777777777777
Q ss_pred HHHHHHHH--HHHHHHHHHH------HHHHHhh
Q 023202 218 DRSQELHH--LKQLVSQYQE------QLRTLET 242 (286)
Q Consensus 218 ~~~~E~~~--lkqlv~qyqe------q~r~LE~ 242 (286)
...++.+. .+.++..|-| +||.+=|
T Consensus 120 ~~~e~~~~~L~~~Il~RYHEEQiWSDKIRr~ST 152 (207)
T PF05546_consen 120 EKVEEAFDDLMRAILTRYHEEQIWSDKIRRAST 152 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 66544432 3456677754 4666654
No 316
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=21.56 E-value=1.9e+02 Score=30.22 Aligned_cols=16 Identities=31% Similarity=0.706 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 023202 219 RSQELHHLKQLVSQYQ 234 (286)
Q Consensus 219 ~~~E~~~lkqlv~qyq 234 (286)
+..++.+|.+||.||.
T Consensus 124 QAakIeQLNrLVqQyK 139 (488)
T PF06548_consen 124 QAAKIEQLNRLVQQYK 139 (488)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3344455555555554
No 317
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.38 E-value=4.9e+02 Score=21.81 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhhhHHHHHHhh
Q 023202 188 LKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQ--------------LVSQYQEQLRTLETSWRLMTLMFDL 253 (286)
Q Consensus 188 lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkq--------------lv~qyqeq~r~LE~~~~~~~~~~~~ 253 (286)
+=+-|....+--..+|.++.-.+..+.+|+...+.+...+. -|...+++|..+|......+.-|+.
T Consensus 91 ~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~ 170 (218)
T cd07596 91 LLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEE 170 (218)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555554444433322 2444445555555555444444443
No 318
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=21.19 E-value=2.3e+02 Score=22.31 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHh
Q 023202 230 VSQYQEQLRTLE 241 (286)
Q Consensus 230 v~qyqeq~r~LE 241 (286)
+.+.++||=.+|
T Consensus 18 L~~lE~qIy~~E 29 (80)
T PF09340_consen 18 LAALEKQIYDKE 29 (80)
T ss_pred HHHHHHHHHHHH
Confidence 444455555555
No 319
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=21.13 E-value=8.3e+02 Score=25.75 Aligned_cols=45 Identities=29% Similarity=0.353 Sum_probs=23.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQEL 223 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~ 223 (286)
+.++.|...|-||.-.---||..|-+|+---..-...|+..+|||
T Consensus 424 qsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQEL 468 (593)
T KOG4807|consen 424 QSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQEL 468 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 445555555555555555577777777654332233343333443
No 320
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.08 E-value=3.5e+02 Score=22.79 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023202 220 SQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 220 ~~E~~~lkqlv~qyqeq~r~LE 241 (286)
..|+..||+.|.+.-|.=.+|+
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~ 42 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALR 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555
No 321
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=21.04 E-value=9.9e+02 Score=26.43 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 212 RQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 212 R~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
-+.|.++-++....||+++.|-|-.+-+|+
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345666667777788888888888877777
No 322
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=20.84 E-value=1.4e+03 Score=26.76 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=18.8
Q ss_pred HHHHHHHHhhHHHH-HhhHHHHHHHHHHHHHHHHHHHH
Q 023202 165 LEKSICARASAEAA-QSFHQENKMLKEQVEALIQENMI 201 (286)
Q Consensus 165 fEKsi~~ra~ae~~-~~~~kEn~~lKeq~~~l~~eN~i 201 (286)
||..|..+.--+-. +++.++++.|.+.+..+.+.+.=
T Consensus 396 ~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~e 433 (1195)
T KOG4643|consen 396 YEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAE 433 (1195)
T ss_pred HHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHH
Confidence 44555554443322 33555666666666555555543
No 323
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=20.81 E-value=8.2e+02 Score=24.17 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhh-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 150 NIDDARARASRALEILEKSICARAS-AEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEY 216 (286)
Q Consensus 150 d~dDARaRAsRvLEafEKsi~~ra~-ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~ 216 (286)
.+++|....+.+=+.+.+-...... -+.+..+.-+..-|+..+..+..||-=|..-+.+=++.|..+
T Consensus 207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L 274 (306)
T PF04849_consen 207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQL 274 (306)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544443333221 122333444445555555556666655555554444444433
No 324
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.80 E-value=3.2e+02 Score=19.40 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 218 DRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 218 ~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+..+++..|..-..+.+.+|..|+
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555554
No 325
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=20.51 E-value=3.5e+02 Score=22.48 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 192 VEALIQENMILKRAVSIQHERQKEY 216 (286)
Q Consensus 192 ~~~l~~eN~iLKrAv~IQheR~~e~ 216 (286)
.-.-+.=.+-++|+-+|+.+|.+.+
T Consensus 63 y~EClh~~Ke~~R~~aI~kqR~K~~ 87 (96)
T PF10200_consen 63 YYECLHHTKEMKRMRAIRKQRDKQI 87 (96)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3334444566788889998887765
No 326
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=20.41 E-value=3.4e+02 Score=25.34 Aligned_cols=75 Identities=16% Similarity=0.323 Sum_probs=41.4
Q ss_pred hhHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023202 173 ASAEAAQSFHQEN---KMLKEQVEALIQENMILKRAVSIQH---ERQKEYED-RSQELHHLKQLVSQYQEQLRTLETSWR 245 (286)
Q Consensus 173 a~ae~~~~~~kEn---~~lKeq~~~l~~eN~iLKrAv~IQh---eR~~e~e~-~~~E~~~lkqlv~qyqeq~r~LE~~~~ 245 (286)
++.++..+||.|| ....+-|+-|.+.-.|.-+-..-|- -+|..++- -..|++.|+--+..|+|+++.|....+
T Consensus 24 ssq~v~~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s 103 (201)
T KOG4603|consen 24 SSQDVFGNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCS 103 (201)
T ss_pred chHHHHHHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4455666677776 3445556666666665544443332 23333332 225666666666777777776665444
Q ss_pred HH
Q 023202 246 LM 247 (286)
Q Consensus 246 ~~ 247 (286)
-+
T Consensus 104 ~v 105 (201)
T KOG4603|consen 104 YV 105 (201)
T ss_pred HH
Confidence 43
No 327
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=20.34 E-value=3.8e+02 Score=22.11 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHHHH
Q 023202 220 SQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQ 270 (286)
Q Consensus 220 ~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL~q 270 (286)
.+.+..||..+..|+........ -..-.++|.+|=|.|--|+.+
T Consensus 28 ~~kl~~l~~~~~~~~~~~~~~~~-------d~e~yl~nPlnaF~LIrRl~~ 71 (134)
T PF08336_consen 28 QEKLDTLKRFLDEMKREHEKAKS-------DPEEYLSNPLNAFSLIRRLHQ 71 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-------chhhhhhcHHHHHHHHHHHHH
Confidence 34466666666666666554441 122367899999999888653
No 328
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=20.31 E-value=6.6e+02 Score=22.89 Aligned_cols=9 Identities=0% Similarity=0.423 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 023202 231 SQYQEQLRT 239 (286)
Q Consensus 231 ~qyqeq~r~ 239 (286)
.+++++|..
T Consensus 163 ~~l~~ei~~ 171 (176)
T PF12999_consen 163 EELEKEIQA 171 (176)
T ss_pred HHHHHHHHH
Confidence 333333333
No 329
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=20.21 E-value=6.4e+02 Score=22.65 Aligned_cols=37 Identities=32% Similarity=0.509 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 192 VEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 192 ~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+..|.+||.-|+-++. ||+ ..|.-+.+.|++|+..|-
T Consensus 72 i~~Lq~EN~eL~~~le-------Ehq------~alelIM~KyReq~~~l~ 108 (181)
T PF05769_consen 72 IRQLQQENRELRQSLE-------EHQ------SALELIMSKYREQMSQLM 108 (181)
T ss_pred HHHHHHHHHHHHHHHH-------HHH------HHHHHHHHHHHHHHHHHH
Confidence 4567788887776653 331 123336777777777664
No 330
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=20.18 E-value=1e+02 Score=22.78 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=19.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 023202 142 VREMMSSSNIDDARARASRALEILEKSICA 171 (286)
Q Consensus 142 V~EM~sAsd~dDARaRAsRvLEafEKsi~~ 171 (286)
..||...--+.- .=|.+||+-|.|+|.+
T Consensus 19 LDeli~~~~I~p--~La~kVL~~FDksi~~ 46 (49)
T PF02268_consen 19 LDELIQEGKITP--QLAMKVLEQFDKSINE 46 (49)
T ss_dssp HHHHHHTTSS-H--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCH--HHHHHHHHHHHHHHHH
Confidence 345555555543 4589999999999986
No 331
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.16 E-value=6e+02 Score=22.35 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023202 215 EYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMT 248 (286)
Q Consensus 215 e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~ 248 (286)
..+...+++..+...+.+...+|+.||.-+.-++
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555556666666666665555554
No 332
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.15 E-value=4.1e+02 Score=20.45 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMIL 202 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iL 202 (286)
+..|+..|++++..+.+.|.+-
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~ 24 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVH 24 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665543
No 333
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.11 E-value=3.6e+02 Score=28.45 Aligned_cols=17 Identities=6% Similarity=0.233 Sum_probs=9.6
Q ss_pred HHhhHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEA 194 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~ 194 (286)
...+|||...+.+++.+
T Consensus 412 treLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 412 TRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35566666555555543
No 334
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=20.10 E-value=7.3e+02 Score=26.55 Aligned_cols=15 Identities=47% Similarity=0.640 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHh
Q 023202 227 KQLVSQYQEQLRTLE 241 (286)
Q Consensus 227 kqlv~qyqeq~r~LE 241 (286)
.|||+|.+-||+.||
T Consensus 226 eQLV~QLkTQItDLE 240 (621)
T KOG3759|consen 226 EQLVDQLKTQITDLE 240 (621)
T ss_pred HHHHHHHHHHHHHHH
Confidence 489999999999999
No 335
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=20.04 E-value=8.2e+02 Score=23.84 Aligned_cols=20 Identities=40% Similarity=0.439 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023202 153 DARARASRALEILEKSICAR 172 (286)
Q Consensus 153 DARaRAsRvLEafEKsi~~r 172 (286)
.|=.||+++|.-|++|-.+.
T Consensus 32 ~aLERaAkAlrel~~S~~Ak 51 (276)
T PF12037_consen 32 EALERAAKALRELNSSPHAK 51 (276)
T ss_pred HHHHHHHHHHHHHhcChhHH
Confidence 35567888887777776553
Done!