Query 023202
Match_columns 286
No_of_seqs 66 out of 68
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 18:05:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgl_A TOLL-interacting protei 99.1 1.4E-10 4.7E-15 85.2 5.9 49 44-92 9-57 (59)
2 2dhy_A CUE domain-containing p 99.0 1E-09 3.5E-14 82.7 7.4 45 45-89 19-63 (67)
3 1p3q_Q VPS9P, vacuolar protein 97.9 3.9E-06 1.3E-10 61.2 1.6 40 45-84 13-52 (54)
4 1otr_A Protein CUE2; protein-p 97.6 7.9E-05 2.7E-09 53.1 4.5 39 46-84 6-44 (49)
5 2di0_A Activating signal coint 96.2 0.0064 2.2E-07 46.4 5.2 39 45-83 14-52 (71)
6 2jee_A YIIU; FTSZ, septum, coi 95.5 0.2 6.7E-06 39.1 10.9 69 160-240 6-74 (81)
7 1vej_A Riken cDNA 4931431F19; 94.9 0.057 1.9E-06 41.2 6.1 54 28-83 10-67 (74)
8 1z96_A DNA-damage, UBA-domain 94.3 0.078 2.7E-06 34.2 4.8 35 45-81 5-39 (40)
9 1vg5_A RSGI RUH-014, rhomboid 94.3 0.13 4.3E-06 39.0 6.6 38 44-83 29-66 (73)
10 2jy5_A Ubiquilin-1; UBA, alter 93.1 0.18 6.1E-06 35.4 5.3 37 45-83 13-50 (52)
11 2knz_A Ubiquilin-4; cytoplasm, 92.0 0.24 8.2E-06 34.8 4.8 36 46-83 13-49 (53)
12 2dah_A Ubiquilin-3; UBA domain 91.9 0.38 1.3E-05 34.2 5.8 38 45-84 10-48 (54)
13 2g3q_A Protein YBL047C; endocy 91.8 0.26 9E-06 32.7 4.6 37 45-83 5-41 (43)
14 2cpw_A CBL-interacting protein 91.1 0.97 3.3E-05 32.9 7.4 37 45-83 20-57 (64)
15 2dae_A KIAA0733 protein; mitog 91.0 0.2 6.7E-06 38.7 3.7 38 46-83 12-49 (75)
16 1ify_A HHR23A, UV excision rep 90.2 0.33 1.1E-05 33.5 4.0 37 45-83 9-45 (49)
17 2bwb_A Ubiquitin-like protein 90.1 0.47 1.6E-05 32.6 4.7 36 46-83 9-45 (46)
18 2ejs_A Autocrine motility fact 89.0 0.71 2.4E-05 33.9 5.2 41 45-86 14-54 (58)
19 1wji_A Tudor domain containing 89.0 0.65 2.2E-05 33.9 5.0 37 45-83 10-46 (63)
20 2dak_A Ubiquitin carboxyl-term 88.9 0.63 2.2E-05 33.5 4.9 37 45-83 10-46 (63)
21 2v71_A Nuclear distribution pr 88.4 7.4 0.00025 34.2 12.2 73 182-271 55-128 (189)
22 2v66_B Nuclear distribution pr 88.3 8.1 0.00028 31.5 11.5 69 185-270 5-74 (111)
23 3hnw_A Uncharacterized protein 88.0 8.1 0.00028 32.0 11.7 98 134-245 33-134 (138)
24 1wr1_B Ubiquitin-like protein 88.0 0.82 2.8E-05 33.0 4.9 36 46-83 19-55 (58)
25 1wj7_A Hypothetical protein (R 87.9 0.71 2.4E-05 37.4 5.0 36 47-83 42-77 (104)
26 2dag_A Ubiquitin carboxyl-term 86.5 3 0.0001 31.1 7.5 38 45-84 10-48 (74)
27 2cp9_A EF-TS, EF-TSMT, elongat 86.5 0.44 1.5E-05 35.5 2.8 41 45-86 10-50 (64)
28 1whc_A RSGI RUH-027, UBA/UBX 3 86.2 2 7E-05 31.1 6.2 37 45-83 10-47 (64)
29 2ekf_A Ancient ubiquitous prot 85.7 1.1 3.6E-05 33.3 4.5 41 45-86 14-54 (61)
30 1veg_A NEDD8 ultimate buster-1 84.8 1.4 4.7E-05 34.2 5.0 37 45-83 30-66 (83)
31 2crn_A Ubash3A protein; compac 83.7 2.4 8.3E-05 30.9 5.7 38 45-84 10-48 (64)
32 3oja_B Anopheles plasmodium-re 83.7 30 0.001 32.6 14.7 58 181-241 507-564 (597)
33 2ekk_A UBA domain from E3 ubiq 83.4 2 6.8E-05 29.0 4.8 36 45-83 10-45 (47)
34 4g3o_A E3 ubiquitin-protein li 83.4 1.9 6.6E-05 31.7 5.0 37 46-83 19-55 (58)
35 1wiv_A UBP14, ubiquitin-specif 82.2 2.2 7.6E-05 31.8 5.1 37 45-83 30-66 (73)
36 2dkl_A Trinucleotide repeat co 81.0 2.4 8.2E-05 32.7 5.0 40 45-86 22-61 (85)
37 2dfs_A Myosin-5A; myosin-V, in 78.4 16 0.00054 38.9 11.8 58 178-241 986-1043(1080)
38 2dai_A Ubadc1, ubiquitin assoc 77.7 3.6 0.00012 31.5 5.1 38 45-84 30-67 (83)
39 1hjb_A Ccaat/enhancer binding 77.0 5.7 0.00019 30.9 6.1 39 188-236 41-79 (87)
40 1ci6_A Transcription factor AT 76.8 4.2 0.00014 29.5 4.9 39 183-231 23-61 (63)
41 2dna_A Unnamed protein product 76.4 2.6 8.9E-05 31.6 3.8 36 47-84 22-58 (67)
42 3oja_B Anopheles plasmodium-re 75.8 26 0.00089 33.0 11.4 18 186-203 505-522 (597)
43 2dq0_A Seryl-tRNA synthetase; 75.6 30 0.001 33.3 12.0 79 163-241 12-96 (455)
44 1dv0_A DNA repair protein HHR2 74.7 1.3 4.4E-05 30.5 1.7 36 46-83 6-41 (47)
45 1vdl_A Ubiquitin carboxyl-term 73.9 5.9 0.0002 30.9 5.3 41 44-84 24-64 (80)
46 2w6b_A RHO guanine nucleotide 73.3 17 0.00057 26.7 7.3 20 188-207 15-34 (56)
47 1hjb_A Ccaat/enhancer binding 72.9 13 0.00045 28.9 7.2 30 178-207 45-74 (87)
48 2lbc_A Ubiquitin carboxyl-term 72.7 4.7 0.00016 32.1 4.7 37 45-83 79-115 (126)
49 1ci6_A Transcription factor AT 72.3 22 0.00076 25.6 7.8 30 177-206 31-60 (63)
50 1ses_A Seryl-tRNA synthetase; 72.1 25 0.00086 33.4 10.4 70 163-241 12-84 (421)
51 1gd2_E Transcription factor PA 71.6 7.9 0.00027 29.0 5.5 24 180-203 47-70 (70)
52 2w83_C C-JUN-amino-terminal ki 71.4 29 0.00099 26.9 8.6 36 210-245 40-75 (77)
53 3qne_A Seryl-tRNA synthetase, 70.9 54 0.0018 32.2 12.6 59 183-241 40-98 (485)
54 1gu4_A CAAT/enhancer binding p 68.9 6 0.0002 30.2 4.3 24 181-204 48-71 (78)
55 1v92_A NSFL1 cofactor P47; 3-h 68.2 7.9 0.00027 25.4 4.4 37 46-83 7-43 (46)
56 2yy0_A C-MYC-binding protein; 66.5 7.7 0.00026 27.6 4.2 28 177-204 20-47 (53)
57 1nkp_B MAX protein, MYC proto- 66.3 14 0.00048 27.4 5.9 42 200-241 40-81 (83)
58 2cwb_A Chimera of immunoglobul 63.5 6.8 0.00023 31.6 3.9 38 45-83 67-104 (108)
59 1wle_A Seryl-tRNA synthetase; 63.4 1.2E+02 0.004 29.8 14.0 29 179-207 73-101 (501)
60 2oqq_A Transcription factor HY 62.9 21 0.00071 24.9 5.7 36 214-269 6-41 (42)
61 1deb_A APC protein, adenomatou 61.8 33 0.0011 24.9 6.8 20 187-206 7-26 (54)
62 4ae4_A Ubiquitin-associated pr 61.7 7.4 0.00025 31.4 3.8 35 47-83 79-113 (118)
63 3tnu_B Keratin, type II cytosk 61.4 60 0.0021 25.8 9.7 26 178-203 31-56 (129)
64 3iox_A AGI/II, PA; alpha helix 59.6 1.4E+02 0.0049 29.8 13.2 72 155-241 22-93 (497)
65 1aip_C EF-TS, elongation facto 59.0 5.4 0.00018 35.3 2.7 27 63-89 21-47 (196)
66 3tnu_A Keratin, type I cytoske 58.5 51 0.0018 26.4 8.3 26 178-203 33-58 (131)
67 1gu4_A CAAT/enhancer binding p 58.0 12 0.00041 28.5 4.2 39 184-232 37-75 (78)
68 1vek_A UBP14, ubiquitin-specif 57.7 17 0.00058 27.7 5.0 37 45-83 30-67 (84)
69 1t2k_D Cyclic-AMP-dependent tr 56.7 19 0.00066 25.4 4.9 20 184-203 23-42 (61)
70 1xb2_B EF-TS, elongation facto 55.8 6.3 0.00021 36.4 2.7 21 63-83 22-42 (291)
71 4emc_A Monopolin complex subun 55.6 83 0.0029 27.8 9.7 52 165-216 7-60 (190)
72 2zxx_A Geminin; coiled-coil, c 55.6 30 0.001 26.8 6.1 30 212-241 25-54 (79)
73 2peq_A ORF134; helix bundle, p 55.5 17 0.00058 30.5 5.1 29 130-167 49-77 (134)
74 4h22_A Leucine-rich repeat fli 54.2 85 0.0029 25.3 11.1 71 165-245 11-82 (103)
75 1oai_A Nuclear RNA export fact 54.0 16 0.00056 26.2 4.2 31 56-86 18-48 (59)
76 2dfs_A Myosin-5A; myosin-V, in 53.9 91 0.0031 33.2 11.4 14 58-71 673-686 (1080)
77 1wgn_A UBAP1, ubiquitin associ 53.2 10 0.00036 28.4 3.1 35 47-83 22-56 (63)
78 2dal_A Protein KIAA0794; FAS a 53.1 23 0.00079 25.3 4.9 38 45-83 16-53 (62)
79 1uii_A Geminin; human, DNA rep 52.9 31 0.0011 27.0 5.9 21 183-203 46-66 (83)
80 2wt7_A Proto-oncogene protein 52.4 27 0.00091 25.0 5.1 38 183-230 23-60 (63)
81 2py8_A Hypothetical protein RB 52.3 44 0.0015 28.4 7.2 29 129-166 48-76 (147)
82 2akf_A Coronin-1A; coiled coil 51.9 18 0.00063 23.7 3.7 22 220-241 5-26 (32)
83 1tr8_A Conserved protein (MTH1 50.2 13 0.00045 29.5 3.5 33 48-81 69-101 (102)
84 1gk7_A Vimentin; intermediate 50.2 31 0.0011 23.1 4.8 21 221-241 6-26 (39)
85 1i84_S Smooth muscle myosin he 49.9 1.4E+02 0.005 31.6 12.2 14 58-71 695-708 (1184)
86 2lva_A Ubiquitin carboxyl-term 53.6 3.8 0.00013 34.4 0.0 44 45-88 19-62 (129)
87 4dzn_A Coiled-coil peptide CC- 47.5 40 0.0014 22.1 4.8 24 181-204 7-30 (33)
88 2dq3_A Seryl-tRNA synthetase; 47.1 25 0.00087 33.3 5.5 61 181-241 35-95 (425)
89 2dzl_A Protein FAM100B; UBA-li 47.1 22 0.00075 26.0 4.0 37 46-83 19-55 (66)
90 1go4_E MAD1 (mitotic arrest de 47.0 1E+02 0.0034 24.6 8.1 27 177-203 13-39 (100)
91 2j5u_A MREC protein; bacterial 46.9 13 0.00045 33.1 3.3 18 212-229 41-58 (255)
92 3e7l_A Transcriptional regulat 46.6 6.3 0.00022 27.4 1.0 26 57-82 18-43 (63)
93 2dam_A ETEA protein; KIAA0887, 46.1 28 0.00097 25.3 4.5 39 45-83 19-57 (67)
94 4ae4_A Ubiquitin-associated pr 45.8 19 0.00064 29.0 3.8 38 45-84 9-46 (118)
95 1dip_A Delta-sleep-inducing pe 45.5 13 0.00044 28.9 2.6 24 181-204 20-43 (78)
96 3ka1_A RBCX protein; chaperone 44.0 1E+02 0.0034 25.7 7.9 30 128-166 47-76 (126)
97 3e21_A HFAF1, FAS-associated f 43.7 27 0.00093 24.1 3.8 36 45-80 6-41 (45)
98 1nkp_B MAX protein, MYC proto- 43.7 70 0.0024 23.5 6.4 32 175-206 46-77 (83)
99 2ooa_A E3 ubiquitin-protein li 43.5 30 0.001 25.0 4.1 40 45-86 12-51 (52)
100 4emc_A Monopolin complex subun 42.7 1.3E+02 0.0043 26.7 8.8 45 192-239 22-66 (190)
101 1jnm_A Proto-oncogene C-JUN; B 42.6 44 0.0015 23.6 4.9 23 181-203 34-56 (62)
102 2cp8_A NEXT to BRCA1 gene 1 pr 42.5 25 0.00087 25.3 3.6 37 47-85 12-49 (54)
103 3ghg_A Fibrinogen alpha chain; 41.9 1.3E+02 0.0046 30.4 9.8 21 221-241 131-151 (562)
104 3na7_A HP0958; flagellar bioge 41.8 1.7E+02 0.006 25.4 10.4 88 150-241 68-156 (256)
105 1a93_B MAX protein, coiled coi 41.6 41 0.0014 22.4 4.2 19 223-241 16-34 (34)
106 1deq_A Fibrinogen (alpha chain 41.6 2E+02 0.0069 28.0 10.7 24 221-244 134-157 (390)
107 1t6f_A Geminin; coiled-coil, c 41.1 35 0.0012 23.1 3.9 25 179-203 10-34 (37)
108 1umq_A Photosynthetic apparatu 40.6 15 0.0005 27.8 2.3 25 58-82 41-65 (81)
109 1uii_A Geminin; human, DNA rep 40.4 99 0.0034 24.1 6.9 30 212-241 37-66 (83)
110 2zxx_A Geminin; coiled-coil, c 40.1 26 0.00089 27.1 3.6 26 179-204 37-62 (79)
111 3mq9_A Bone marrow stromal ant 39.9 2.2E+02 0.0077 26.1 11.9 82 161-248 357-438 (471)
112 1nkp_A C-MYC, MYC proto-oncoge 39.8 88 0.003 23.7 6.6 8 200-207 45-52 (88)
113 3cvf_A Homer-3, homer protein 39.2 1.2E+02 0.004 23.3 7.1 56 185-240 8-64 (79)
114 3hx3_A Retinaldehyde-binding p 38.9 37 0.0013 30.3 4.9 30 55-84 87-116 (316)
115 3vp9_A General transcriptional 38.6 77 0.0026 25.0 6.1 12 230-241 70-81 (92)
116 2wt7_A Proto-oncogene protein 38.0 1.1E+02 0.0036 21.8 7.9 27 180-206 34-60 (63)
117 3k9o_A Ubiquitin-conjugating e 37.4 39 0.0013 28.6 4.7 35 47-83 166-200 (201)
118 2d9s_A CBL E3 ubiquitin protei 37.3 43 0.0015 24.2 4.1 39 45-85 10-48 (53)
119 4dzn_A Coiled-coil peptide CC- 37.1 35 0.0012 22.3 3.3 21 184-204 3-23 (33)
120 2jp7_A MRNA export factor MEX6 35.9 31 0.0011 24.7 3.2 29 56-84 17-45 (57)
121 1nlw_A MAD protein, MAX dimeri 35.8 96 0.0033 23.2 6.1 24 179-202 50-73 (80)
122 3vmx_A Voltage-gated hydrogen 35.8 1.2E+02 0.004 21.6 6.6 38 191-231 5-42 (48)
123 2apl_A Hypothetical protein PG 35.5 48 0.0016 28.6 4.9 37 147-183 27-63 (157)
124 2oqq_A Transcription factor HY 35.2 65 0.0022 22.4 4.6 27 180-206 14-40 (42)
125 3mtu_E Head morphogenesis prot 35.1 1.1E+02 0.0038 23.5 6.4 44 219-272 28-71 (77)
126 2wvr_A Geminin; DNA replicatio 34.5 1E+02 0.0034 27.7 6.9 24 179-202 111-134 (209)
127 4ath_A MITF, microphthalmia-as 34.2 1.3E+02 0.0044 23.3 6.7 42 200-241 32-76 (83)
128 1a5t_A Delta prime, HOLB; zinc 33.9 26 0.0009 30.9 3.2 53 26-84 156-208 (334)
129 2fxo_A Myosin heavy chain, car 33.4 1.8E+02 0.0062 23.1 8.5 54 189-242 68-125 (129)
130 3hhm_B NISH2 P85alpha; PI3KCA, 32.9 1.8E+02 0.0061 27.4 8.8 55 185-239 207-265 (373)
131 1aua_A Phosphatidylinositol tr 32.6 90 0.0031 27.0 6.3 39 46-84 32-76 (296)
132 3jsv_C NF-kappa-B essential mo 32.1 1.9E+02 0.0065 23.0 8.1 43 162-206 11-56 (94)
133 3oja_A Leucine-rich immune mol 32.0 2.3E+02 0.0079 26.1 9.3 21 221-241 428-448 (487)
134 3s9g_A Protein hexim1; cyclin 31.8 2.1E+02 0.007 23.2 10.4 43 163-205 17-59 (104)
135 2avr_X Adhesion A; antiparalle 31.7 2.2E+02 0.0074 23.5 11.9 65 193-265 27-104 (119)
136 2w6b_A RHO guanine nucleotide 31.4 1.5E+02 0.0052 21.6 7.2 35 213-247 16-50 (56)
137 2lbc_A Ubiquitin carboxyl-term 31.2 34 0.0012 27.0 3.1 37 46-84 5-42 (126)
138 2j69_A Bacterial dynamin-like 31.2 2E+02 0.0068 28.6 9.3 53 150-207 331-383 (695)
139 2jn6_A Protein CGL2762, transp 31.2 3 0.0001 30.6 -2.9 27 181-207 64-90 (97)
140 3lss_A Seryl-tRNA synthetase; 31.0 3.9E+02 0.013 26.2 13.0 12 230-241 113-124 (484)
141 2v4h_A NF-kappa-B essential mo 30.7 30 0.001 28.3 2.7 19 181-199 88-106 (110)
142 1ntc_A Protein (nitrogen regul 30.7 9.4 0.00032 28.4 -0.3 26 57-82 50-75 (91)
143 1m1j_B Fibrinogen beta chain; 30.6 4E+02 0.014 26.2 13.3 25 221-245 168-192 (464)
144 2qsf_X RAD23, UV excision repa 29.8 64 0.0022 27.8 4.8 36 46-83 132-167 (171)
145 1nkp_A C-MYC, MYC proto-oncoge 29.7 1.2E+02 0.0042 22.9 5.9 29 176-204 52-80 (88)
146 4fla_A Regulation of nuclear P 29.7 2.4E+02 0.0084 23.5 12.5 49 155-212 67-115 (152)
147 3he5_B Synzip2; heterodimeric 29.6 1.5E+02 0.0051 21.0 6.6 40 185-241 5-44 (52)
148 2j5u_A MREC protein; bacterial 29.5 35 0.0012 30.3 3.1 15 181-195 24-38 (255)
149 2dgc_A Protein (GCN4); basic d 29.3 74 0.0025 22.9 4.4 23 182-204 29-51 (63)
150 1hlo_A Protein (transcription 29.2 65 0.0022 23.6 4.2 22 178-199 59-80 (80)
151 1m1j_C Fibrinogen gamma chain; 28.7 2.9E+02 0.01 26.5 9.6 21 221-241 91-111 (409)
152 1nlw_A MAD protein, MAX dimeri 28.4 88 0.003 23.4 4.8 8 200-207 40-47 (80)
153 3m9b_A Proteasome-associated A 28.4 68 0.0023 29.4 4.9 20 222-241 76-95 (251)
154 2oo9_A E3 ubiquitin-protein li 28.3 69 0.0024 22.6 3.8 35 48-84 8-42 (46)
155 3s4r_A Vimentin; alpha-helix, 28.2 74 0.0025 24.5 4.5 34 222-272 10-43 (93)
156 2yy0_A C-MYC-binding protein; 28.1 1E+02 0.0035 21.7 4.8 28 214-241 19-46 (53)
157 1m1j_B Fibrinogen beta chain; 27.8 4.4E+02 0.015 25.8 11.0 12 130-142 81-92 (464)
158 2ve7_A Kinetochore protein HEC 27.7 80 0.0027 28.9 5.3 52 147-203 161-212 (315)
159 3q8g_A CRAL-TRIO domain-contai 27.4 93 0.0032 27.9 5.6 38 46-83 41-84 (320)
160 1eto_A FIS, factor for inversi 27.1 32 0.0011 26.5 2.2 26 57-82 57-82 (98)
161 3l4f_A RHO guanine nucleotide 26.9 1.2E+02 0.0042 22.4 5.2 25 188-212 12-37 (61)
162 3viq_A SWI5-dependent recombin 26.7 1.7E+02 0.0057 23.8 6.5 49 180-237 4-52 (122)
163 2v4h_A NF-kappa-B essential mo 26.5 2.6E+02 0.009 22.7 9.4 12 230-241 92-103 (110)
164 1kmi_Z CHEZ, chemotaxis protei 26.1 3.3E+02 0.011 23.7 8.8 23 147-169 44-77 (214)
165 2l5g_B Putative uncharacterize 25.6 1.6E+02 0.0056 20.4 5.3 27 216-242 11-37 (42)
166 1xaw_A Occludin; coiled-coil, 25.4 3E+02 0.01 23.1 8.3 22 215-236 117-138 (140)
167 3a7p_A Autophagy protein 16; c 25.3 3.2E+02 0.011 23.3 10.0 30 212-241 94-123 (152)
168 1oqy_A HHR23A, UV excision rep 25.3 32 0.0011 32.4 2.3 37 45-83 169-205 (368)
169 3efg_A Protein SLYX homolog; x 24.9 1.8E+02 0.0061 21.8 5.9 24 222-245 29-52 (78)
170 1c1g_A Tropomyosin; contractIl 24.9 2.6E+02 0.0087 22.1 11.9 10 231-240 86-95 (284)
171 1sxj_B Activator 1 37 kDa subu 24.7 42 0.0014 28.1 2.7 52 34-87 160-215 (323)
172 4aj5_1 SKA3, spindle and kinet 24.6 2.8E+02 0.0094 22.3 9.1 41 175-215 41-88 (101)
173 2oxj_A Hybrid alpha/beta pepti 24.3 1.3E+02 0.0044 20.1 4.3 16 188-203 6-21 (34)
174 1sxj_E Activator 1 40 kDa subu 24.1 30 0.001 29.9 1.6 58 26-88 182-244 (354)
175 2wvr_A Geminin; DNA replicatio 23.6 2.2E+02 0.0077 25.5 7.2 29 178-206 117-145 (209)
176 2chq_A Replication factor C sm 23.1 44 0.0015 27.9 2.5 52 34-87 155-210 (319)
177 1ik9_A DNA repair protein XRCC 22.9 3.8E+02 0.013 23.4 12.0 37 180-216 150-191 (213)
178 1joc_A EEA1, early endosomal a 22.8 2.9E+02 0.0098 21.9 8.0 24 221-244 18-41 (125)
179 1olm_A SEC14-like protein 2; l 22.6 76 0.0026 28.8 4.2 30 55-84 30-59 (403)
180 1r5l_A Alpha-TTP, protein (alp 22.6 85 0.0029 26.3 4.2 28 57-84 30-57 (262)
181 1am9_A Srebp-1A, protein (ster 22.2 2E+02 0.007 21.2 5.8 9 200-208 43-51 (82)
182 3a2a_A Voltage-gated hydrogen 21.5 1.9E+02 0.0066 21.2 5.3 12 218-229 36-47 (58)
183 2l3l_A Tubulin-specific chaper 21.4 2.3E+02 0.0079 22.4 6.3 34 212-245 56-101 (111)
184 2wuj_A Septum site-determining 21.4 56 0.0019 23.0 2.4 18 179-196 37-54 (57)
185 2qho_B E3 ubiquitin-protein li 21.3 2.3E+02 0.0078 20.4 5.5 38 45-82 10-47 (53)
186 2juj_A E3 ubiquitin-protein li 20.7 87 0.003 22.9 3.3 40 45-86 8-47 (56)
187 3s9g_A Protein hexim1; cyclin 20.6 2.5E+02 0.0086 22.7 6.3 38 219-266 49-86 (104)
188 3c3f_A Alpha/beta peptide with 20.3 1.7E+02 0.0059 19.5 4.3 15 188-202 6-20 (34)
189 1deq_A Fibrinogen (alpha chain 20.0 4.5E+02 0.015 25.5 9.0 21 63-83 54-74 (390)
No 1
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=99.08 E-value=1.4e-10 Score=85.18 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=44.7
Q ss_pred ccchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcCcCCCC
Q 023202 44 RSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSADNN 92 (286)
Q Consensus 44 ~~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L~sa~~~ 92 (286)
.+.-+++|+.+||+||+++|+.+|++|++|+|.||..|.++...+..+.
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 4677999999999999999999999999999999999999988776554
No 2
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1e-09 Score=82.65 Aligned_cols=45 Identities=27% Similarity=0.544 Sum_probs=41.9
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcCcC
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGSA 89 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L~sa 89 (286)
...+++|+.+||+||+++|+.+|++||+|+|+||++|.++...+.
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~ 63 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESG 63 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCC
Confidence 467999999999999999999999999999999999999988664
No 3
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=97.87 E-value=3.9e-06 Score=61.21 Aligned_cols=40 Identities=23% Similarity=0.476 Sum_probs=31.0
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
...+..|+.+||+||.+||+.+|+.++.++|+||.+|.++
T Consensus 13 ~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 13 KDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 3568899999999999999999999999999999998765
No 4
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.56 E-value=7.9e-05 Score=53.09 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=36.0
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
+-+..|..+||..+...+..+|+.||+|+|.||..|.+.
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 347889999999999999999999999999999998774
No 5
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.23 E-value=0.0064 Score=46.42 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=37.1
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
++.+.+++.|||++....+.+.|+.+|+|++.+|-.|-+
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 467999999999999999999999999999999999988
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.51 E-value=0.2 Score=39.13 Aligned_cols=69 Identities=28% Similarity=0.346 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 160 RALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 160 RvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~ 239 (286)
-+|+-||.=|-. +-+.+.-++.|+..||++-..|.++|.-++. ..+...+|.++||+-...+|++|+.
T Consensus 6 ElleqLE~KIq~--avdtI~lLqmEieELKekN~~L~~e~~e~~~----------~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 6 EVFEKLEAKVQQ--AIDTITLLQMEIEELKEKNNSLSQEVQNAQH----------QREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666654 3345778899999999999999999876653 2345678899999999999999998
Q ss_pred H
Q 023202 240 L 240 (286)
Q Consensus 240 L 240 (286)
|
T Consensus 74 L 74 (81)
T 2jee_A 74 L 74 (81)
T ss_dssp H
T ss_pred H
Confidence 7
No 7
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.92 E-value=0.057 Score=41.15 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=39.6
Q ss_pred ccCCC---CCCCCCCCCCCccchHHHHHhhCCCC-CHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 28 RCSSS---SPVRFSPPRSSRSHLLDQLAAIFPDM-DNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 28 Rcsss---sp~rf~~p~~~~~~ll~~L~~lFP~m-D~q~le~aLe~cGndlDsAIksL~~ 83 (286)
-||.| +|....||...-+.-|.+|..+ ++ |.+...+||..+++|++.||..|..
T Consensus 10 ~~s~s~~~~~~~~~~pe~~ye~qi~qL~eM--GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 10 ACSQSSQTALPTSLFTEGRYQQELEELKAL--GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp CCCCCCSSCCCCGGGTTTTSHHHHHHHHHH--TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred hcccccCCCCCCCCCchHHHHHHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 46555 2233334433345578999998 54 7899999999999999999999986
No 8
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=94.27 E-value=0.078 Score=34.20 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=31.5
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSL 81 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL 81 (286)
+..|.+|..+ +.++....+||..|++|++.||..|
T Consensus 5 ~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568999998 8999999999999999999999876
No 9
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.25 E-value=0.13 Score=39.04 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=34.2
Q ss_pred ccchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 44 RSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 44 ~~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
.+..|.+|..+ +++.....+||..|++|++.|+..|..
T Consensus 29 ~ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 46688999998 789999999999999999999998875
No 10
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=93.10 E-value=0.18 Score=35.38 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=32.7
Q ss_pred cchHHHHHhhCCCC-CHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDM-DNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~m-D~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+..|.+|..+ +. |.+...+||..||+|++.||..|-.
T Consensus 13 ~~~l~~L~~M--GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 13 QQQLEQLSAM--GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4568999998 78 9999999999999999999998853
No 11
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=92.01 E-value=0.24 Score=34.78 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=31.9
Q ss_pred chHHHHHhhCCCC-CHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 46 HLLDQLAAIFPDM-DNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 46 ~ll~~L~~lFP~m-D~q~le~aLe~cGndlDsAIksL~~ 83 (286)
..|.+|..+ +. |.+...+||..||+|++.||..|-.
T Consensus 13 ~~l~~L~~M--GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 13 QQLEQLNSM--GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHTT--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 357888887 67 9999999999999999999999876
No 12
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.89 E-value=0.38 Score=34.17 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=32.5
Q ss_pred cchHHHHHhhCCCC-CHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 45 SHLLDQLAAIFPDM-DNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 45 ~~ll~~L~~lFP~m-D~q~le~aLe~cGndlDsAIksL~~L 84 (286)
+.-|.+|..+ ++ |.+...+||..|++|++.||..|-..
T Consensus 10 ~~~l~~L~~M--GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 10 QVQLEQLRSM--GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3568999998 56 67788999999999999999999874
No 13
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=91.81 E-value=0.26 Score=32.68 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=31.8
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+..|.+|..+ +.++....+||..||+|++.|+.-|-+
T Consensus 5 e~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 4568888887 788899999999999999999988753
No 14
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.12 E-value=0.97 Score=32.90 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=33.5
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCC-CHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGD-DLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGn-dlDsAIksL~~ 83 (286)
+..|.+|..+ ++++....+||..||| |++.|+.-|-+
T Consensus 20 e~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 20 GSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4679999998 7889999999999998 99999999876
No 15
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.01 E-value=0.2 Score=38.75 Aligned_cols=38 Identities=21% Similarity=0.496 Sum_probs=35.9
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
.+++.|+..||.+...|+...+-+.++++|+.|..|.+
T Consensus 12 qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~q 49 (75)
T 2dae_A 12 QVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQ 49 (75)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHH
Confidence 47899999999999999999999999999999999976
No 16
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.19 E-value=0.33 Score=33.55 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=32.8
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+..|.+|..+ +.++....+||..|++|++.|+.-|-+
T Consensus 9 ~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4568888888 789999999999999999999998865
No 17
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=90.14 E-value=0.47 Score=32.64 Aligned_cols=36 Identities=31% Similarity=0.359 Sum_probs=30.4
Q ss_pred chHHHHHhhCCCC-CHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 46 HLLDQLAAIFPDM-DNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 46 ~ll~~L~~lFP~m-D~q~le~aLe~cGndlDsAIksL~~ 83 (286)
.-|.+|..+ +. |.+...+||..|++|++.||..|-.
T Consensus 9 ~~i~~L~~M--GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 9 HQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 457888887 44 7888899999999999999998853
No 18
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.02 E-value=0.71 Score=33.88 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=36.8
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
.+.+++++.+||+++...+..-|+..| +++..|..+.+=++
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGrl 54 (58)
T 2ejs_A 14 NAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGRI 54 (58)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcCC
Confidence 467899999999999999999999999 99999998877554
No 19
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=88.96 E-value=0.65 Score=33.87 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=33.4
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+..|.+|..+ +++.....+||..|++|++.|+.-|.+
T Consensus 10 ~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4678999988 789999999999999999999999876
No 20
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.93 E-value=0.63 Score=33.46 Aligned_cols=37 Identities=11% Similarity=0.219 Sum_probs=33.5
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+..|.+|..+ +++.....+||..|++|++.|+.-|-+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 10 EDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4678999998 677899999999999999999999987
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.36 E-value=7.4 Score=34.23 Aligned_cols=73 Identities=22% Similarity=0.218 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchh
Q 023202 182 HQENKMLKEQVEALIQENMILKRAVSIQH-ERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVN 260 (286)
Q Consensus 182 ~kEn~~lKeq~~~l~~eN~iLKrAv~IQh-eR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~ 260 (286)
.+-+..|+.++..|..|..-+|.=+.-++ +-.+.......|+.+|+....+|+.+||.|| +.
T Consensus 55 Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLE-----------------q~ 117 (189)
T 2v71_A 55 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE-----------------QA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HH
Confidence 34455566666666666666665443332 2233445567889999999999999999999 88
Q ss_pred hHHHHHHHHHh
Q 023202 261 NYALTMHLKQA 271 (286)
Q Consensus 261 NyaL~~hL~qa 271 (286)
|.-|---.+.+
T Consensus 118 NDdlEr~~R~~ 128 (189)
T 2v71_A 118 NDDLERAKRAT 128 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 88876555544
No 22
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.30 E-value=8.1 Score=31.47 Aligned_cols=69 Identities=22% Similarity=0.211 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHH
Q 023202 185 NKMLKEQVEALIQENMILKRAVSIQH-ERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYA 263 (286)
Q Consensus 185 n~~lKeq~~~l~~eN~iLKrAv~IQh-eR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~Nya 263 (286)
+..|+.+.++|..|.--+|.=+.-++ +-.+..-..+.|+.+|+..-..|+.+||.|| +.|.-
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLE-----------------q~NDD 67 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE-----------------QANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhchH
Confidence 45577777777777777766554433 2233444457899999999999999999999 88888
Q ss_pred HHHHHHH
Q 023202 264 LTMHLKQ 270 (286)
Q Consensus 264 L~~hL~q 270 (286)
|----+-
T Consensus 68 LER~~R~ 74 (111)
T 2v66_B 68 LERAKRA 74 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7654443
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.01 E-value=8.1 Score=31.97 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHH-hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 134 GPEWVELFVREMMSS---SNIDDARARASRALEILEKSICAR-ASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQ 209 (286)
Q Consensus 134 g~eWVEl~V~EM~sA---sd~dDARaRAsRvLEafEKsi~~r-a~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQ 209 (286)
-+..|+-=++||... ..+++-|. +|.+. .-++.--..++++..|+++++.+.+|..-||.=+.--
T Consensus 33 vA~~vd~km~ei~~~~~~~~l~~~r~-----------aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~ 101 (138)
T 3hnw_A 33 VASYINNKITEFNKEESYRRMSAELR-----------TDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAA 101 (138)
T ss_dssp HHHHHHHHHHHHTTCHHHHTSCHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777755 44444332 22222 2344455567788888888888888888887643322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023202 210 HERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWR 245 (286)
Q Consensus 210 heR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~ 245 (286)
+-+++...+|+..|+.-+...|+++..||+.+.
T Consensus 102 ---~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 102 ---QIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234556678888889999999999999996543
No 24
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=87.97 E-value=0.82 Score=33.04 Aligned_cols=36 Identities=31% Similarity=0.359 Sum_probs=31.1
Q ss_pred chHHHHHhhCCCC-CHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 46 HLLDQLAAIFPDM-DNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 46 ~ll~~L~~lFP~m-D~q~le~aLe~cGndlDsAIksL~~ 83 (286)
.-|.+|..+ +. |.+...+||..+++|++.||..|..
T Consensus 19 ~qi~~L~~M--GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 19 HQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 458889988 44 7889999999999999999999865
No 25
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.95 E-value=0.71 Score=37.41 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=31.4
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 47 ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
-|..|..+ .++++.-...||++|++||..||..|.+
T Consensus 42 kVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 42 KVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46667776 6789999999999999999999999876
No 26
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.54 E-value=3 Score=31.12 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=34.1
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCC-CHHHHHHHHhhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGD-DLDSAIRSLNEL 84 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGn-dlDsAIksL~~L 84 (286)
+..|.+|..+ +++.....+||..||| |++.|+.-|.+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 10 ESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5788999998 7789999999999997 899999999884
No 27
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=86.53 E-value=0.44 Score=35.47 Aligned_cols=41 Identities=29% Similarity=0.289 Sum_probs=32.2
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
...|..||.. -+..-.--.+||++|++||+.||.-|..-.+
T Consensus 10 ~~~Vk~LRe~-TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg~ 50 (64)
T 2cp9_A 10 KELLMKLRRK-TGYSFVNCKKALETCGGDLKQAEIWLHKEAQ 50 (64)
T ss_dssp CHHHHHHHHH-HCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHHhH
Confidence 3678888887 3445556779999999999999999987443
No 28
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.21 E-value=2 Score=31.11 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=33.1
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcC-CCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECG-DDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cG-ndlDsAIksL~~ 83 (286)
+..|.+|..+ +++.....+||..|| +|++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 10 LTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 4679999997 778899999999994 899999999987
No 29
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.67 E-value=1.1 Score=33.31 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=37.1
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
.+.+++++.+||++....+..-|+..| +++..|..+.+=++
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr~ 54 (61)
T 2ekf_A 14 ATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGAV 54 (61)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCCC
Confidence 567999999999999999999999999 99999999887555
No 30
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=84.79 E-value=1.4 Score=34.21 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=34.7
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+..|.+|..+ ++++....+||..|++|++-|+.-|-.
T Consensus 30 ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5789999999 899999999999999999999999987
No 31
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=83.73 E-value=2.4 Score=30.88 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=34.1
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCC-CHHHHHHHHhhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGD-DLDSAIRSLNEL 84 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGn-dlDsAIksL~~L 84 (286)
+..|.+|..+ +++.....+||..||| |++.|+.-|-+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 10 PSLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp CSSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 4678999997 7888999999999999 999999999873
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.66 E-value=30 Score=32.63 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+.++.+.+++..+.+.+++..+++++. +.+++|+...+|+..+++.+..-++++.+|.
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEAD---AKQKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhh---hhhcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 333444444444444444444444431 2234444444455555555555555555555
No 33
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.43 E-value=2 Score=28.99 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=30.7
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+..|.+|..+ +.++....+||..|| |++.|+.-|-+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 4678999988 667799999999997 89999998754
No 34
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=83.38 E-value=1.9 Score=31.73 Aligned_cols=37 Identities=14% Similarity=0.322 Sum_probs=32.6
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+.+++++.+||+++...+..-|+..| +++..|..+.+
T Consensus 19 ~Mve~V~~mFPqv~~~~I~~DL~rTg-SVe~TienILe 55 (58)
T 4g3o_A 19 AMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHC-CHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHc
Confidence 56899999999999999999999985 89999987754
No 35
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=82.16 E-value=2.2 Score=31.76 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=33.5
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+..|.+|..+ +++.....+||..||+|++.|+.-|-+
T Consensus 30 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4678999998 678999999999999999999998876
No 36
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=80.98 E-value=2.4 Score=32.67 Aligned_cols=40 Identities=28% Similarity=0.411 Sum_probs=35.0
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
+..|.+|..+ +++++..++||..|++|++.|+.-|-+...
T Consensus 22 ~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 22 SRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKKV 61 (85)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCcC
Confidence 4568899998 778899999999999999999999988544
No 37
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.41 E-value=16 Score=38.94 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=34.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
..++++|+..|+++++.+.+|+..|+... ++.+ ++.+..+.+|+......++|+..||
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~----~~~~--~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWA----DKYK--HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777665442 1111 2333455556666666666666666
No 38
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.72 E-value=3.6 Score=31.47 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=34.6
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
+..|.+|..+ +++.....+||..|++|++.|+.-|-+.
T Consensus 30 e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 30 EAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 5778999998 8889999999999999999999999873
No 39
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=77.04 E-value=5.7 Score=30.95 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 188 LKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQ 236 (286)
Q Consensus 188 lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq 236 (286)
+...++.|.+||..|+.=|. ....|+..|++++.|...+
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~----------~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVE----------QLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCcHH
Confidence 34445555555555543322 2344555555555554443
No 40
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.81 E-value=4.2 Score=29.48 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 183 QENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVS 231 (286)
Q Consensus 183 kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~ 231 (286)
.+...|..+++.|..+|.-|+.=+ +....|+..||+++.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i----------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERA----------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence 355555556666666666555322 223445555565553
No 41
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=76.37 E-value=2.6 Score=31.57 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=30.8
Q ss_pred hHHHHHhh-CCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 47 LLDQLAAI-FPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 47 ll~~L~~l-FP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
-|.+|+.+ | .|.+...+||.+|++|++.||..|...
T Consensus 22 ql~qL~~MGF--~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 22 EMECLQAMGF--VNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 57777776 3 578888999999999999999999883
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.79 E-value=26 Score=33.03 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023202 186 KMLKEQVEALIQENMILK 203 (286)
Q Consensus 186 ~~lKeq~~~l~~eN~iLK 203 (286)
..+++.+..+.+....+.
T Consensus 505 ~~l~~~~~~~~~~~~~~~ 522 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKL 522 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhH
Confidence 344444444444443333
No 43
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=75.61 E-value=30 Score=33.28 Aligned_cols=79 Identities=8% Similarity=0.219 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhh------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 163 EILEKSICARAS------AEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQ 236 (286)
Q Consensus 163 EafEKsi~~ra~------ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq 236 (286)
|.+.+++..|-. -+..-.+-++-..++.+++.|..+.+.+-+.+..--....+.+....|...|+.-+....++
T Consensus 12 ~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (455)
T 2dq0_A 12 ELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENE 91 (455)
T ss_dssp HHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555532 23344455566677777777777766666665431111122223334444555555555555
Q ss_pred HHHHh
Q 023202 237 LRTLE 241 (286)
Q Consensus 237 ~r~LE 241 (286)
++++|
T Consensus 92 ~~~~~ 96 (455)
T 2dq0_A 92 VEELK 96 (455)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55555
No 44
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=74.71 E-value=1.3 Score=30.45 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=30.3
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
..|.+|..+ ++++..+.+||.+||+|.+.|+.-|-+
T Consensus 6 eaI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456777777 788999999999999999999988754
No 45
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=73.93 E-value=5.9 Score=30.88 Aligned_cols=41 Identities=32% Similarity=0.404 Sum_probs=37.7
Q ss_pred ccchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 44 RSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 44 ~~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
...+|.+|+.|----|+++|..||+++..||..|+--|.+=
T Consensus 24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 45689999999999999999999999999999999999873
No 46
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=73.34 E-value=17 Score=26.70 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023202 188 LKEQVEALIQENMILKRAVS 207 (286)
Q Consensus 188 lKeq~~~l~~eN~iLKrAv~ 207 (286)
||-|+..|.+||.-||+++-
T Consensus 15 LkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777664
No 47
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=72.85 E-value=13 Score=28.86 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=26.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAVS 207 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~ 207 (286)
+..+.+||..|+.+++.|..|...||..|.
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455899999999999999999999987764
No 48
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=72.67 E-value=4.7 Score=32.08 Aligned_cols=37 Identities=11% Similarity=0.248 Sum_probs=33.6
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+..|.+|..+ +.+.....+||..||||++.|+.-|-.
T Consensus 79 e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 79 EEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5679999998 778999999999999999999999876
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=72.29 E-value=22 Score=25.59 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=23.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILKRAV 206 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv 206 (286)
..+.+.+||..|+.++..|..|+..||..+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345588888888888888888888888654
No 50
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=72.10 E-value=25 Score=33.38 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhh---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 163 EILEKSICARAS---AEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 163 EafEKsi~~ra~---ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~ 239 (286)
+.+.+++..|-. -+..-.+.++...++.+++.|..+.+.+-+.+.. +.+ .+...|+.-+.+..++|++
T Consensus 12 ~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~---~~~------~~~~~l~~~~~~~~~~~~~ 82 (421)
T 1ses_A 12 EVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPK---APP------EEKEALIARGKALGEEAKR 82 (421)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---SCH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcc------ccHHHHHHHHHHHHHHHHH
Confidence 445555555532 3445556667778888888888887777776654 221 1223344444445555555
Q ss_pred Hh
Q 023202 240 LE 241 (286)
Q Consensus 240 LE 241 (286)
||
T Consensus 83 ~~ 84 (421)
T 1ses_A 83 LE 84 (421)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 51
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=71.65 E-value=7.9 Score=29.01 Aligned_cols=24 Identities=42% Similarity=0.440 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 023202 180 SFHQENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~iLK 203 (286)
.+..||..|++++..|..||..||
T Consensus 47 ~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 47 STTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356777777777777777777664
No 52
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=71.43 E-value=29 Score=26.86 Aligned_cols=36 Identities=31% Similarity=0.268 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023202 210 HERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSWR 245 (286)
Q Consensus 210 heR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~ 245 (286)
-+-..|++....|+..+++.....+++|+.||..++
T Consensus 40 dELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 40 DELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777889999999999999999999996554
No 53
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=70.95 E-value=54 Score=32.23 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 183 QENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 183 kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
++-..++.+++.|..+.+.+.+.+..--....+.++...|...||.-+....++++.+|
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~ 98 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEAD 98 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443322111112333445566666666666666666666
No 54
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=68.92 E-value=6 Score=30.22 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
+.+||..|+.+|+.|..|...||.
T Consensus 48 L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 48 LTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666555554
No 55
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=68.21 E-value=7.9 Score=25.37 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=31.0
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
.++.++..+ -+.++......|+.|+.||+.||..+.+
T Consensus 7 ~~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 7 DALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 467777766 5679999999999999999999987754
No 56
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.50 E-value=7.7 Score=27.56 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=24.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
....++.||..||.+++.|..++.-|++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999888876
No 57
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=66.30 E-value=14 Score=27.36 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 200 MILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 200 ~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
.||+.|+..=..-+.+.+....|+..|++-..+.+.+|..|+
T Consensus 40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777664444444444444555555555555555555543
No 58
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=63.52 E-value=6.8 Score=31.64 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=31.1
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+.-|.+|+.+= -.|.+...+||..|+.|++.||..|..
T Consensus 67 ~~qL~qL~eMG-F~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 67 QPQLQQLRDMG-IQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHHTTT-CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45678888761 136789999999999999999999976
No 59
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=63.36 E-value=1.2e+02 Score=29.80 Aligned_cols=29 Identities=34% Similarity=0.374 Sum_probs=15.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKRAVS 207 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKrAv~ 207 (286)
-.+.++...++.+++.|..+.+.+-+.+.
T Consensus 73 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~ 101 (501)
T 1wle_A 73 ISTWQELRQLREQIRSLEEEKEAVTEAVR 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555554444
No 60
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=62.92 E-value=21 Score=24.87 Aligned_cols=36 Identities=36% Similarity=0.455 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHHH
Q 023202 214 KEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLK 269 (286)
Q Consensus 214 ~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL~ 269 (286)
.++|.+..++++ -.++..++|.||+ ..|+-|+--|+
T Consensus 6 ~eLE~r~k~le~---~naeLEervstLq-----------------~EN~mLRqvl~ 41 (42)
T 2oqq_A 6 SELENRVKDLEN---KNSELEERLSTLQ-----------------NENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHH-----------------HhHHHHHHHhc
Confidence 355555555544 6778889999999 88888776554
No 61
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=61.84 E-value=33 Score=24.91 Aligned_cols=20 Identities=45% Similarity=0.473 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023202 187 MLKEQVEALIQENMILKRAV 206 (286)
Q Consensus 187 ~lKeq~~~l~~eN~iLKrAv 206 (286)
.|-.|++.|..||.-|+|-+
T Consensus 7 QL~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 46678999999999888754
No 62
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=61.71 E-value=7.4 Score=31.41 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=29.0
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 47 ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
.+.+|..+ +.+...+.+||..|+||+|.|+.-|-.
T Consensus 79 ~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 79 LMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 36666665 578999999999999999999988754
No 63
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.44 E-value=60 Score=25.84 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=13.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLK 203 (286)
.+..+.|+..|+.++..|.-|-.-||
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666555554443
No 64
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=59.58 E-value=1.4e+02 Score=29.76 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 155 RARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQ 234 (286)
Q Consensus 155 RaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyq 234 (286)
+..=+.+-+++|+.+.+ .+.+|+.+|...+++.+.|.-.|-...-- +..| +++|...++-++.|+
T Consensus 22 qkana~aka~Ye~~~ae---------~~a~n~~i~aeNeaikkrNa~aka~Ye~~---l~kY---~~dlakY~~~~AeY~ 86 (497)
T 3iox_A 22 QKANADAKAAYEAAVAA---------NNAANAALTAENTAIKKRNADAKADYEAK---LAKY---QADLAKYQKDLADYP 86 (497)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHH
Confidence 33334456666666655 33445555555555555555554433211 1112 334444444455555
Q ss_pred HHHHHHh
Q 023202 235 EQLRTLE 241 (286)
Q Consensus 235 eq~r~LE 241 (286)
.++..-|
T Consensus 87 ~kl~aYe 93 (497)
T 3iox_A 87 VKLKAYE 93 (497)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 65
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=58.97 E-value=5.4 Score=35.28 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=22.5
Q ss_pred HHHHHHHcCCCHHHHHHHHhhhhcCcC
Q 023202 63 LDRALEECGDDLDSAIRSLNELRLGSA 89 (286)
Q Consensus 63 le~aLe~cGndlDsAIksL~~L~L~sa 89 (286)
-.+||++|++|+|.||.-|..--+..+
T Consensus 21 CKkAL~e~~GD~ekAie~LR~kG~akA 47 (196)
T 1aip_C 21 VKRALEDAGWDEEKAVQLLRERGAMKA 47 (196)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCchh
Confidence 468999999999999999998655443
No 66
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.53 E-value=51 Score=26.37 Aligned_cols=26 Identities=23% Similarity=0.042 Sum_probs=9.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLK 203 (286)
.+..+.|+..|+.++..|.-|..-||
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~ 58 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQL 58 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666655555544443
No 67
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=57.95 E-value=12 Score=28.52 Aligned_cols=39 Identities=33% Similarity=0.379 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 184 ENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQ 232 (286)
Q Consensus 184 En~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~q 232 (286)
-...+++.++.|.+||..|+.-|. ....|+..|++++.|
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~----------~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVE----------QLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 345667788889999999886443 346677777776654
No 68
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=57.75 E-value=17 Score=27.68 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=33.3
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcC-CCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECG-DDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cG-ndlDsAIksL~~ 83 (286)
+..|.+|..+ +++.....+||..+| +|++.|+.-|-+
T Consensus 30 e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 30 EEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5789999998 788899999999997 499999999987
No 69
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=56.73 E-value=19 Score=25.39 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023202 184 ENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 184 En~~lKeq~~~l~~eN~iLK 203 (286)
....|..+++.|..+|.-|+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554
No 70
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=55.77 E-value=6.3 Score=36.42 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCHHHHHHHHhh
Q 023202 63 LDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 63 le~aLe~cGndlDsAIksL~~ 83 (286)
-.+||++|++|+|.||.-|..
T Consensus 22 CKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 22 CKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 569999999999999999987
No 71
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=55.63 E-value=83 Score=27.83 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=27.7
Q ss_pred HHHHHHHH--hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 165 LEKSICAR--ASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEY 216 (286)
Q Consensus 165 fEKsi~~r--a~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~ 216 (286)
|-++|-+| .+.-.+++++.||.+|.+|++....|+.-|++=++-..+..+.+
T Consensus 7 YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~ 60 (190)
T 4emc_A 7 YKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKEL 60 (190)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34444443 33345677888888888888877777777766555444444333
No 72
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=55.57 E-value=30 Score=26.77 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 212 RQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 212 R~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
|++.+.+.-+|..+|..-|.+.++.|.+|.
T Consensus 25 RR~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk 54 (79)
T 2zxx_A 25 RRKALYEALKENEKLHKEIEQKDSEIARLR 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555554
No 73
>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A
Probab=55.55 E-value=17 Score=30.48 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=21.9
Q ss_pred CCCChhhHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 023202 130 FQLDGPEWVELFVREMMSSSNIDDARARASRALEILEK 167 (286)
Q Consensus 130 ~p~~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafEK 167 (286)
-+.||..|++.|++|= +.=|.||+++=|-
T Consensus 49 ~l~DGd~fL~~L~~e~---------~~LAlRIM~VRe~ 77 (134)
T 2peq_A 49 PIQESDLYLEAMMLEN---------KELVLRILTVREN 77 (134)
T ss_dssp CTTSHHHHHHHHHTTC---------HHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHhHC---------HHHHHHHHHHHHH
Confidence 3579999999998861 5558999886443
No 74
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=54.21 E-value=85 Score=25.35 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=46.5
Q ss_pred HHHHHHHHhhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023202 165 LEKSICARASAE-AAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETS 243 (286)
Q Consensus 165 fEKsi~~ra~ae-~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~ 243 (286)
|-|++...|-=+ ...++.=+..-||-.++.+-....-|+| ++.++.+|+..+|...+..+.++..|...
T Consensus 11 yrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~R----------e~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 11 YKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRR----------QYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666554432 2344555777777777777776665544 66777777777777777777777777644
Q ss_pred hh
Q 023202 244 WR 245 (286)
Q Consensus 244 ~~ 245 (286)
++
T Consensus 81 L~ 82 (103)
T 4h22_A 81 LK 82 (103)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 75
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=54.01 E-value=16 Score=26.18 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 56 PDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 56 P~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
=+|-.+--.+.|+++|=|++.|++.+.+|.-
T Consensus 18 Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 18 SGMNLEWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp HCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5788899999999999999999999999864
No 76
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=53.87 E-value=91 Score=33.25 Aligned_cols=14 Identities=29% Similarity=0.620 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHcC
Q 023202 58 MDNQILDRALEECG 71 (286)
Q Consensus 58 mD~q~le~aLe~cG 71 (286)
+|..++-.=|.-||
T Consensus 673 fd~~~V~~QLr~~G 686 (1080)
T 2dfs_A 673 FDEKRAVQQLRACG 686 (1080)
T ss_dssp CCHHHHHHHHHTTT
T ss_pred cCHHhhHHHHhhcc
Confidence 56666666666666
No 77
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.19 E-value=10 Score=28.36 Aligned_cols=35 Identities=11% Similarity=0.305 Sum_probs=28.9
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 47 ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
.|+.|-.+ +..++...+||.+||||++.|..-|-.
T Consensus 22 ~V~~LvsM--GFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 22 CVETVVNM--GYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46666655 467888999999999999999998866
No 78
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.14 E-value=23 Score=25.25 Aligned_cols=38 Identities=21% Similarity=0.451 Sum_probs=32.9
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+.+|.++..+ -+.++.....+|+.++.||+.||..+.+
T Consensus 16 ~e~i~qF~~i-Tg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 16 KGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4578888876 5789999999999999999999988765
No 79
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=52.93 E-value=31 Score=26.97 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023202 183 QENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 183 kEn~~lKeq~~~l~~eN~iLK 203 (286)
+||+-|.++++.+-.|+..||
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk 66 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLK 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666665554
No 80
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.45 E-value=27 Score=25.00 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 183 QENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLV 230 (286)
Q Consensus 183 kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv 230 (286)
.....|..+++.|..+|.-|+.-+ .....|+.+|++++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei----------~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEI----------ANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 345666667777777777776543 22345566666655
No 81
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=52.34 E-value=44 Score=28.40 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=21.7
Q ss_pred cCCCChhhHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 023202 129 VFQLDGPEWVELFVREMMSSSNIDDARARASRALEILE 166 (286)
Q Consensus 129 ~~p~~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafE 166 (286)
+-+.||..|++.|++| + +.=|.||+++=|
T Consensus 48 npl~DGd~fL~~Lmre-----~----~~LAlRIMeVR~ 76 (147)
T 2py8_A 48 HSIQNGETFLTELLDE-----N----KELVLRILAVRE 76 (147)
T ss_dssp SCCSSHHHHHHHHHTT-----C----HHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHhh-----C----HHHHHHHHHHHH
Confidence 3457999999999998 2 344888887644
No 82
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=51.87 E-value=18 Score=23.68 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023202 220 SQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 220 ~~E~~~lkqlv~qyqeq~r~LE 241 (286)
..|+..|..+|...|+++.+||
T Consensus 5 ee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888899999999999999
No 83
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=50.24 E-value=13 Score=29.46 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=26.0
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 023202 48 LDQLAAIFPDMDNQILDRALEECGDDLDSAIRSL 81 (286)
Q Consensus 48 l~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL 81 (286)
++-+..- .+.+..-..+||++|++||=.||..|
T Consensus 69 i~lv~~q-~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 69 IELVMNQ-TGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 4555554 37777888999999999999999876
No 84
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=50.23 E-value=31 Score=23.15 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 023202 221 QELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 221 ~E~~~lkqlv~qyqeq~r~LE 241 (286)
.+++.|..-.+-|-+++|.||
T Consensus 6 e~mq~LNdrlAsyidkVR~LE 26 (39)
T 1gk7_A 6 VELQELNDRFANYIDKVRFLE 26 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457888888899999999999
No 85
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=49.94 E-value=1.4e+02 Score=31.57 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHcC
Q 023202 58 MDNQILDRALEECG 71 (286)
Q Consensus 58 mD~q~le~aLe~cG 71 (286)
+|..++-.=|.-||
T Consensus 695 fd~~~V~~QLr~~G 708 (1184)
T 1i84_S 695 LDAHLVLEQLRCNG 708 (1184)
T ss_dssp CCHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhhcC
Confidence 34444444444444
No 86
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=53.59 E-value=3.8 Score=34.40 Aligned_cols=44 Identities=30% Similarity=0.376 Sum_probs=38.3
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcCc
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLGS 88 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L~s 88 (286)
..+|-||+.|=--=|+++|..||.+|..||..|+--|.+=+...
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~~ 62 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKE 62 (129)
Confidence 35789999998888999999999999999999999998854433
No 87
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=47.48 E-value=40 Score=22.08 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
+++|...||..+.+|.-|..-||.
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566666666666666666665554
No 88
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=47.11 E-value=25 Score=33.32 Aligned_cols=61 Identities=20% Similarity=0.360 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+-++...++.+++.|..+.+.+-+.+..--....+.+....|...|+.-+....++++++|
T Consensus 35 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVE 95 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444444432000012233334566666666666666776666
No 89
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.07 E-value=22 Score=25.95 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=32.0
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
.++.++..+ -+-++.....+|+.++.||+.||..+.+
T Consensus 19 ~~i~qF~~i-Tg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLA-AGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 567777766 6789999999999999999999998865
No 90
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.98 E-value=1e+02 Score=24.64 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=12.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLK 203 (286)
...++.+|+..|....++|.+++..|.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 91
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=46.90 E-value=13 Score=33.06 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023202 212 RQKEYEDRSQELHHLKQL 229 (286)
Q Consensus 212 R~~e~e~~~~E~~~lkql 229 (286)
+..+++...+|...|+++
T Consensus 41 ~~~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 41 LESEVADLKKENKDLKES 58 (255)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444445555555554
No 92
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=46.63 E-value=6.3 Score=27.45 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 57 DMDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 57 ~mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
.+..++|..+|+.||.++..|.+.|.
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LG 43 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIG 43 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45789999999999999999988764
No 93
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.12 E-value=28 Score=25.30 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=33.8
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
..+|.++..+=---|+.....+|+.++-||+.||-.+.+
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 457888888765479999999999999999999998876
No 94
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=45.76 E-value=19 Score=29.03 Aligned_cols=38 Identities=11% Similarity=0.266 Sum_probs=32.4
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
..+|.+|..+ +.......+||..||||.+.|+.-|...
T Consensus 9 ~~~v~~l~~M--GFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 9 RQCVETVVNM--GYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 3577888876 5668899999999999999999999875
No 95
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=45.50 E-value=13 Score=28.86 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
++.-++.|-+++..|-.||.+||.
T Consensus 20 LKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 20 LKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555543
No 96
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=43.95 E-value=1e+02 Score=25.72 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=23.6
Q ss_pred ccCCCChhhHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 023202 128 KVFQLDGPEWVELFVREMMSSSNIDDARARASRALEILE 166 (286)
Q Consensus 128 ~~~p~~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafE 166 (286)
.+-+.||..|++.|++| + +.=|.|||++=|
T Consensus 47 ~~~~~DGe~fl~~L~~E-----~----~~LA~RIM~vR~ 76 (126)
T 3ka1_A 47 QESIQDGERYLEALFRE-----Q----PDLGFRILTVRE 76 (126)
T ss_dssp HHCSSCHHHHHHHHHHH-----C----HHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHhh-----C----HHHHHHHHHHHH
Confidence 34568999999999999 1 567889997644
No 97
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=43.68 E-value=27 Score=24.06 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=28.2
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHH
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRS 80 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIks 80 (286)
+.+|+++..+==--|+..-..+||.++-||+.|+-+
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 456777777654444699999999999999999854
No 98
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=43.66 E-value=70 Score=23.47 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=23.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 175 AEAAQSFHQENKMLKEQVEALIQENMILKRAV 206 (286)
Q Consensus 175 ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv 206 (286)
.+-+..+++++..|+++++.|.++|.-|+.-+
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566678888888888888888887776543
No 99
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=43.49 E-value=30 Score=24.96 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=34.2
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
++-+++|-.+ +.|.+-+.+||..++||++-|.--|.+..+
T Consensus 12 ~~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLlef~~ 51 (52)
T 2ooa_A 12 DAKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILREFAF 51 (52)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHhcC
Confidence 4667888877 789999999999999999999998887643
No 100
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=42.68 E-value=1.3e+02 Score=26.67 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 192 VEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 192 ~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~ 239 (286)
+..|..||..|..-+. .|..|.+....+++.|++=+..++.++..
T Consensus 22 V~~L~~En~~L~~ql~---~k~~ei~~L~~ql~sl~~~~~~~~~~~~~ 66 (190)
T 4emc_A 22 VANLVNENFVLSEKLD---TKATEIKQLQKQIDSLNAQVKELKTQTSQ 66 (190)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 4578888888877665 44445555555666666666666665543
No 101
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.56 E-value=44 Score=23.64 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLK 203 (286)
+..||..|+.++..|..|+.-||
T Consensus 34 L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 102
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.47 E-value=25 Score=25.28 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=30.8
Q ss_pred hHHHHHhh-CCCCCHHHHHHHHHHcCCCHHHHHHHHhhhh
Q 023202 47 LLDQLAAI-FPDMDNQILDRALEECGDDLDSAIRSLNELR 85 (286)
Q Consensus 47 ll~~L~~l-FP~mD~q~le~aLe~cGndlDsAIksL~~L~ 85 (286)
.+.+|..+ | .|.+.-.++|..+|.|++.||..|..+.
T Consensus 12 ~L~~L~eMGF--~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 12 LMAHLFEMGF--CDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 56777776 3 3889999999999999999999998753
No 103
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.92 E-value=1.3e+02 Score=30.43 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 023202 221 QELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 221 ~E~~~lkqlv~qyqeq~r~LE 241 (286)
+.++.|+..|..-..+|++||
T Consensus 131 snIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666677777
No 104
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.79 E-value=1.7e+02 Score=25.36 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 023202 150 NIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELH-HLKQ 228 (286)
Q Consensus 150 d~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~-~lkq 228 (286)
+++++++|..+.=+-+ .+|. +....+.+++|...++..+..+-.+-.=+...+.-......+.+....+++ +|..
T Consensus 68 ~i~~~~~ri~~~~~~l-~~v~---~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~ 143 (256)
T 3na7_A 68 TLQDTNAKIASIQKKM-SEIK---SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALE 143 (256)
T ss_dssp HHHHHHHHHHHHHHHH-HHCS---SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHh
Q 023202 229 LVSQYQEQLRTLE 241 (286)
Q Consensus 229 lv~qyqeq~r~LE 241 (286)
+...+.+.+..++
T Consensus 144 ~~~~~~~~~~e~~ 156 (256)
T 3na7_A 144 LESLVENEVKNIK 156 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 105
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=41.61 E-value=41 Score=22.44 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 023202 223 LHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 223 ~~~lkqlv~qyqeq~r~LE 241 (286)
+..||.=-...++|||+||
T Consensus 16 IddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 16 IDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3333333444455555554
No 106
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.56 E-value=2e+02 Score=27.96 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 023202 221 QELHHLKQLVSQYQEQLRTLETSW 244 (286)
Q Consensus 221 ~E~~~lkqlv~qyqeq~r~LE~~~ 244 (286)
+.++.|+..|..-..+|++||-.+
T Consensus 134 ~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666677777777444
No 107
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.12 E-value=35 Score=23.13 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=18.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLK 203 (286)
.++|+|...-.+++.+|..||.-|+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4577777777778888888776654
No 108
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=40.62 E-value=15 Score=27.77 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 58 MDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 58 mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
++.++|..+|+.||.++..|.+.|.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~LG 65 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRLN 65 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 3678999999999999999988764
No 109
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=40.37 E-value=99 Score=24.13 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 212 RQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 212 R~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
|++.+++--+|..+|.+.|.+.+|.|.+|.
T Consensus 37 RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk 66 (83)
T 1uii_A 37 RRKALYEALKENEKLHKEIEQKDNEIARLK 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555555
No 110
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=40.09 E-value=26 Score=27.10 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=20.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
..+|++...+++.+..|..||..||-
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888888754
No 111
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=39.87 E-value=2.2e+02 Score=26.06 Aligned_cols=82 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 161 ALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTL 240 (286)
Q Consensus 161 vLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~L 240 (286)
+-+++++.+.....++.+= +.++++++.++.++..-+.+-.+++.-|+.+.+-+.-+.+++.-.+..---+-||
T Consensus 357 ~~~~~~~vl~G~~t~eeal------~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (471)
T 3mq9_A 357 VRTAVINAASGRQTVDEAL------KDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMAL 430 (471)
T ss_dssp HHHHHHHHHHSSSCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHH------HHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHH
Q ss_pred hhhhhHHH
Q 023202 241 ETSWRLMT 248 (286)
Q Consensus 241 E~~~~~~~ 248 (286)
..+|..++
T Consensus 431 ~~~~~~~~ 438 (471)
T 3mq9_A 431 MASLDAEK 438 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 112
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=39.78 E-value=88 Score=23.67 Aligned_cols=8 Identities=50% Similarity=0.791 Sum_probs=4.8
Q ss_pred HHHHHHHH
Q 023202 200 MILKRAVS 207 (286)
Q Consensus 200 ~iLKrAv~ 207 (286)
.||++|+.
T Consensus 45 ~iL~~A~~ 52 (88)
T 1nkp_A 45 VILKKATA 52 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 46666654
No 113
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=39.19 E-value=1.2e+02 Score=23.28 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 023202 185 NKMLKEQVEALIQENMILKRAVSIQHERQKEYED-RSQELHHLKQLVSQYQEQLRTL 240 (286)
Q Consensus 185 n~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~-~~~E~~~lkqlv~qyqeq~r~L 240 (286)
+..+-++++.+-.+|.-|+.=|.--..+..+... +.+--..||++..+.--+|..|
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL 64 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFEL 64 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3333444444444444444444333333333221 2222344455555555555554
No 114
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=38.94 E-value=37 Score=30.33 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 55 FPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 55 FP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
++..|+..|-+.|.+|..|++.|.+.|.+.
T Consensus 87 ~~~~dD~~LlRFLRarkfdv~kA~~~L~~~ 116 (316)
T 3hx3_A 87 VQEKDSGFFLRFIRARKFNVGRAYELLRGY 116 (316)
T ss_dssp TTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578999999999999999999999998774
No 115
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=38.56 E-value=77 Score=25.02 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHh
Q 023202 230 VSQYQEQLRTLE 241 (286)
Q Consensus 230 v~qyqeq~r~LE 241 (286)
-.+|.|.|..|-
T Consensus 70 Kq~YEeEI~rLr 81 (92)
T 3vp9_A 70 KDAYEEEIKHLK 81 (92)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445666666554
No 116
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.03 E-value=1.1e+02 Score=21.78 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 180 SFHQENKMLKEQVEALIQENMILKRAV 206 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~iLKrAv 206 (286)
.+..||..|+.++..|..|..-||..+
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666665544
No 117
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=37.45 E-value=39 Score=28.65 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=27.7
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 47 ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
.|..|..+ +.|+.-...||..|+.|++.|+..|-.
T Consensus 166 kV~~l~~M--Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 166 KIENLCAM--GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34555554 778888899999999999999988753
No 118
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=37.27 E-value=43 Score=24.23 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=33.5
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELR 85 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~ 85 (286)
++-+.+|-.+ +.|.+-+.+||..++||+|-|.--|.+.-
T Consensus 10 e~~I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 10 SSEIERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4558888887 78999999999999999999998888743
No 119
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=37.06 E-value=35 Score=22.34 Aligned_cols=21 Identities=38% Similarity=0.358 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023202 184 ENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 184 En~~lKeq~~~l~~eN~iLKr 204 (286)
|...||+.+.+|.+|..-||=
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777663
No 120
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=35.90 E-value=31 Score=24.70 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 56 PDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 56 P~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
-.|-.+-=++.|+++|=|++.||..+.++
T Consensus 17 T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 17 TKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 47888999999999999999999999996
No 121
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=35.83 E-value=96 Score=23.18 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=9.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMIL 202 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iL 202 (286)
..++.++..|.+..+.|..+|..|
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 122
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=35.76 E-value=1.2e+02 Score=21.59 Aligned_cols=38 Identities=34% Similarity=0.451 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 191 QVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVS 231 (286)
Q Consensus 191 q~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~ 231 (286)
++.+|..-|--| |-.|||- +.-+.++.||.+.|+.++-
T Consensus 5 ~l~kLKe~n~~L--~~kv~~L-e~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 5 QILRLKQINIQL--ATKIQHL-EFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHH-HHHccHHHHHHHHHHHHHH
Confidence 344444444444 4444443 3445555666666666554
No 123
>2apl_A Hypothetical protein PG0816; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG, U function; 2.01A {Porphyromonas gingivalis} SCOP: a.258.1.1
Probab=35.54 E-value=48 Score=28.60 Aligned_cols=37 Identities=24% Similarity=0.160 Sum_probs=29.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHH
Q 023202 147 SSSNIDDARARASRALEILEKSICARASAEAAQSFHQ 183 (286)
Q Consensus 147 sAsd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~k 183 (286)
-+.|-+=-++||..++++||++|++-...+.++.+..
T Consensus 27 ~a~D~~FI~~Rad~Aa~aYe~A~~~G~~~~~A~e~A~ 63 (157)
T 2apl_A 27 MSGNNPFITARSDEALTAYCDAVAQGFSHPEAESMAS 63 (157)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 3566666789999999999999999888877665544
No 124
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=35.15 E-value=65 Score=22.39 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 180 SFHQENKMLKEQVEALIQENMILKRAV 206 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~iLKrAv 206 (286)
.++.-|..|.+.+--|..||..|+..+
T Consensus 14 ~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 367778889999999999998887654
No 125
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=35.14 E-value=1.1e+02 Score=23.53 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHHHHhh
Q 023202 219 RSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAE 272 (286)
Q Consensus 219 ~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL~qa~ 272 (286)
+..-+|+|+.--.-++..|..||..+..+| ..|-.++-.|.|+-
T Consensus 28 ~~~~~~~~~~~~~~~EKTIDDLEDkL~~eK----------EK~k~i~eeLDqTL 71 (77)
T 3mtu_E 28 RTEALQQLRVNYGSFVSEYNDLEEKVAHAK----------EENLNMHQMLDQTL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHH
Confidence 344577777777788999999998888888 77777777776654
No 126
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=34.47 E-value=1e+02 Score=27.72 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=11.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALIQENMIL 202 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~~eN~iL 202 (286)
..-=+||+-|.++++.+-.|+..|
T Consensus 111 ~eaLeEN~~Lh~~ie~l~eEi~~L 134 (209)
T 2wvr_A 111 YEALKENEKLHKEIEQKDNEIARL 134 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555555555544444433
No 127
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=34.23 E-value=1.3e+02 Score=23.35 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q 023202 200 MILKRAVSIQHERQKEYEDRSQ---ELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 200 ~iLKrAv~IQheR~~e~e~~~~---E~~~lkqlv~qyqeq~r~LE 241 (286)
.|||++|-.=..-+++.+...+ +...|...-.++-..|+.||
T Consensus 32 ~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 32 TILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5888887643333333322222 22233334455666667777
No 128
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=33.92 E-value=26 Score=30.91 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=40.6
Q ss_pred ccccCCCCCCCCCCCCCCccchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 26 R~Rcssssp~rf~~p~~~~~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
|.||. .++|.||. .+.+...|.... .++++.++.+++.+|.|+..|+.-|..+
T Consensus 156 ~SRc~---~~~~~~~~--~~~~~~~L~~~~-~~~~~~~~~l~~~s~G~~r~a~~~l~~~ 208 (334)
T 1a5t_A 156 RSRCR---LHYLAPPP--EQYAVTWLSREV-TMSQDALLAALRLSAGSPGAALALFQGD 208 (334)
T ss_dssp HTTSE---EEECCCCC--HHHHHHHHHHHC-CCCHHHHHHHHHHTTTCHHHHHHTTSSH
T ss_pred hhcce---eeeCCCCC--HHHHHHHHHHhc-CCCHHHHHHHHHHcCCCHHHHHHHhccc
Confidence 45774 46777753 356677788877 7899999999999999999998876654
No 129
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.37 E-value=1.8e+02 Score=23.09 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Q 023202 189 KEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHH----LKQLVSQYQEQLRTLET 242 (286)
Q Consensus 189 Keq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~----lkqlv~qyqeq~r~LE~ 242 (286)
-+..++|+....-|-.-+.--++|..+.++++.++.. |.+-|..+.++|..+|.
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666767777778888888877766654 55567777778877773
No 130
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=32.87 E-value=1.8e+02 Score=27.42 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 023202 185 NKMLKEQVEALIQENMILKRAVSIQHERQKEYEDR----SQELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 185 n~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~----~~E~~~lkqlv~qyqeq~r~ 239 (286)
+.-||.+|+.+..-..-|..-+..|-....+.|.+ .=|+.+|+..-+||.+.|..
T Consensus 207 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~ 265 (373)
T 3hhm_B 207 YDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQ 265 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHH
Confidence 34556666655555555555555555544444432 23666777777777654443
No 131
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=32.55 E-value=90 Score=26.95 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=31.7
Q ss_pred chHHHHHhhC------CCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 46 HLLDQLAAIF------PDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 46 ~ll~~L~~lF------P~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
..|.+|+..+ +.+|+..|-+.|.+|..|++.|.+.|.+-
T Consensus 32 ~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~ 76 (296)
T 1aua_A 32 KALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENC 76 (296)
T ss_dssp HHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4567776543 45899999999999999999999999763
No 132
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=32.07 E-value=1.9e+02 Score=22.95 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 023202 162 LEILEKSICARASAEAAQSFHQENKMLK---EQVEALIQENMILKRAV 206 (286)
Q Consensus 162 LEafEKsi~~ra~ae~~~~~~kEn~~lK---eq~~~l~~eN~iLKrAv 206 (286)
|..-|+++.. .-..+.+++.+..-++ +++..|..+..|.|.=|
T Consensus 11 L~~aEeaL~~--kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF 56 (94)
T 3jsv_C 11 LQQAEEALVA--KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 56 (94)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544 2333455666655555 56666666666666655
No 133
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.97 E-value=2.3e+02 Score=26.10 Aligned_cols=21 Identities=14% Similarity=0.059 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 023202 221 QELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 221 ~E~~~lkqlv~qyqeq~r~LE 241 (286)
.|...+++....+|+++..|+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~ 448 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLA 448 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHH
Confidence 344445677777777777765
No 134
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=31.76 E-value=2.1e+02 Score=23.22 Aligned_cols=43 Identities=19% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 163 EILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRA 205 (286)
Q Consensus 163 EafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrA 205 (286)
++||+.=+++-.-=..+.+=+|...|...++.+-.||.-|++.
T Consensus 17 e~YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~ 59 (104)
T 3s9g_A 17 ETYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLE 59 (104)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655554333334556667888888888887777766654
No 135
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=31.70 E-value=2.2e+02 Score=23.45 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccch
Q 023202 193 EALIQENMILKRAVSIQHER---QKEYEDRSQELH----------HLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQV 259 (286)
Q Consensus 193 ~~l~~eN~iLKrAv~IQheR---~~e~e~~~~E~~----------~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~ 259 (286)
++..++..+...|..--.++ +.+++++-.++. +.++|+.+|++-++.||+..+...-. +
T Consensus 27 qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~i--------I 98 (119)
T 2avr_X 27 ARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAV--------I 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 34556666666666555555 445555554443 45789999999999999888876644 5
Q ss_pred hhHHHH
Q 023202 260 NNYALT 265 (286)
Q Consensus 260 ~NyaL~ 265 (286)
+||..-
T Consensus 99 ~nFe~I 104 (119)
T 2avr_X 99 SDFEKI 104 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 566554
No 136
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=31.36 E-value=1.5e+02 Score=21.62 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 023202 213 QKEYEDRSQELHHLKQLVSQYQEQLRTLETSWRLM 247 (286)
Q Consensus 213 ~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~~~~ 247 (286)
..+..+..+|..+|++-+..=|.--|.||.-+|.+
T Consensus 16 kDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556778888888888888888888666655
No 137
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=31.25 E-value=34 Score=26.98 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=30.0
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCC-CHHHHHHHHhhh
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGD-DLDSAIRSLNEL 84 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGn-dlDsAIksL~~L 84 (286)
..|.+|..+ +.+....++||..||| |++.|+.-|.+.
T Consensus 5 ~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 5 SSVMQLAEM--GFPLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp HHHHHHHTT--SSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456777764 4556889999999998 999999999773
No 138
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=31.16 E-value=2e+02 Score=28.65 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 150 NIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVS 207 (286)
Q Consensus 150 d~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~ 207 (286)
-+.-++.|+.+++..+...|...... ++++...++++++.+..+-.-|++...
T Consensus 331 ~l~~~~~~~~~~~~~l~~~i~~~l~~-----l~~~~~~~~~~l~~~~~~~~~l~~~~~ 383 (695)
T 2j69_A 331 ELRQVRTLARLACNHTREAVARRIPL-----LEQDVNELKKRIDSVEPEFNKLTGIRD 383 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HTSCSHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666655555544332 455666666666666665555544433
No 139
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=31.16 E-value=3 Score=30.60 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVS 207 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~ 207 (286)
..+|++.|+.++..|..||.+||.+..
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~~ 90 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAESCL 90 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888899999999987754
No 140
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=30.99 E-value=3.9e+02 Score=26.16 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHh
Q 023202 230 VSQYQEQLRTLE 241 (286)
Q Consensus 230 v~qyqeq~r~LE 241 (286)
+.+..++|++||
T Consensus 113 ~~~l~~~i~~le 124 (484)
T 3lss_A 113 SKDLSDQVAGLA 124 (484)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444455555555
No 141
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=30.71 E-value=30 Score=28.31 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEALIQEN 199 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN 199 (286)
++.|...|++|++.|.++|
T Consensus 88 l~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 142
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=30.68 E-value=9.4 Score=28.44 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 57 DMDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 57 ~mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
.++.++|..+|+.||.++..|.+.|.
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LG 75 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45788999999999999988887664
No 143
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.57 E-value=4e+02 Score=26.15 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 023202 221 QELHHLKQLVSQYQEQLRTLETSWR 245 (286)
Q Consensus 221 ~E~~~lkqlv~qyqeq~r~LE~~~~ 245 (286)
..++.|+.++.++.++|..||..+.
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778889999999999996553
No 144
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=29.82 E-value=64 Score=27.80 Aligned_cols=36 Identities=11% Similarity=0.304 Sum_probs=31.9
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
.-|..|..+ +.|+..+-.||..|+.|.+.|+..|-+
T Consensus 132 eaI~rL~~m--GF~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 132 QAISRLCEL--GFERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp HHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 458899988 799999999999999999999988764
No 145
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.74 E-value=1.2e+02 Score=22.86 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=20.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 176 EAAQSFHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 176 e~~~~~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
+-++.++.++..+..+++.|.++|..|+.
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777776664
No 146
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=29.71 E-value=2.4e+02 Score=23.46 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 155 RARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHER 212 (286)
Q Consensus 155 RaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR 212 (286)
|..+.++++.||.+..- +..-|..|..+++.-.+=...|..+...|.+.
T Consensus 67 k~~~e~l~~~veeA~~~---------L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~ 115 (152)
T 4fla_A 67 KEAAERLSKTVDEACLL---------LAEYNGRLAAELEDRRQLARMLVEYTQNQKDV 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777766543 44445555555544444444555555555444
No 147
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.56 E-value=1.5e+02 Score=20.97 Aligned_cols=40 Identities=25% Similarity=0.587 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 185 NKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 185 n~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
|.-|+..+.+|.++|--| +| .-|.|..+++..+..|-+||
T Consensus 5 naylrkkiarlkkdnlql--------er---------deqnlekiianlrdeiarle 44 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQL--------ER---------DEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhh--------hh---------hHhhHHHHHHHHHHHHHHHH
Confidence 566788888888888544 33 23455678999999999998
No 148
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=29.45 E-value=35 Score=30.30 Aligned_cols=15 Identities=47% Similarity=0.554 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHH
Q 023202 181 FHQENKMLKEQVEAL 195 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l 195 (286)
+++||+.||+++..|
T Consensus 24 l~~eN~~Lk~e~~~l 38 (255)
T 2j5u_A 24 TYTENQHLKERLEEL 38 (255)
T ss_dssp --CTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555554444433
No 149
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.32 E-value=74 Score=22.91 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023202 182 HQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 182 ~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
+.....|..+++.|..+|.-|+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888877777653
No 150
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.24 E-value=65 Score=23.61 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=9.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEALIQEN 199 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN 199 (286)
+..+++++..|+++++.|.+||
T Consensus 59 I~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444444444444443
No 151
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.66 E-value=2.9e+02 Score=26.50 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 023202 221 QELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 221 ~E~~~lkqlv~qyqeq~r~LE 241 (286)
.|+..|..++....++|+.||
T Consensus 91 ~~~~~~e~~~~~~~~~i~~l~ 111 (409)
T 1m1j_C 91 EEIIRYENTILAHENTIQQLT 111 (409)
T ss_dssp HHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHH
Confidence 334444444444444444444
No 152
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.40 E-value=88 Score=23.38 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=5.2
Q ss_pred HHHHHHHH
Q 023202 200 MILKRAVS 207 (286)
Q Consensus 200 ~iLKrAv~ 207 (286)
.||++|+.
T Consensus 40 ~iL~kA~~ 47 (80)
T 1nlw_A 40 SLLTKAKL 47 (80)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666665
No 153
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.35 E-value=68 Score=29.38 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 023202 222 ELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 222 E~~~lkqlv~qyqeq~r~LE 241 (286)
+++.+++-+.+++++|..|-
T Consensus 76 ~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 76 TLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35555555566666666553
No 154
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=28.28 E-value=69 Score=22.62 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 48 LDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 48 l~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
++.|-.+ +.|.+-+.+||.-+.||++.|-.-|.+.
T Consensus 8 I~~L~s~--Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 8 IENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHT--TBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 4444443 7789999999999999999998888764
No 155
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.20 E-value=74 Score=24.50 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHHHHHHhh
Q 023202 222 ELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTMHLKQAE 272 (286)
Q Consensus 222 E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~hL~qa~ 272 (286)
+++.|.-=.+-|=++||.|| +.|-.|...+++-.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LE-----------------qqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLE-----------------QQNKILLAELEQLK 43 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHh
Confidence 46677777888888888888 77777766655443
No 156
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.10 E-value=1e+02 Score=21.70 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 214 KEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 214 ~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
.|++...+|+..||+=+...++++..|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666665555
No 157
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.78 E-value=4.4e+02 Score=25.82 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=8.2
Q ss_pred CCCChhhHHHHHH
Q 023202 130 FQLDGPEWVELFV 142 (286)
Q Consensus 130 ~p~~g~eWVEl~V 142 (286)
.|+ |=+|.+.|+
T Consensus 81 CPT-tC~l~D~L~ 92 (464)
T 1m1j_B 81 CPT-GCELQTTLL 92 (464)
T ss_dssp EEC-TTHHHHHHH
T ss_pred CCC-ccHHHHHHH
Confidence 444 567888886
No 158
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=27.70 E-value=80 Score=28.86 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=28.5
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023202 147 SSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILK 203 (286)
Q Consensus 147 sAsd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLK 203 (286)
...+.++..+ .+.+.|++... ...+..+++..++.+|+++++.|-++-.-++
T Consensus 161 ~~d~~~~~~~---e~~~~~~~~~n--~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 161 GADSFDEMNA---ELQSKLKDLFN--VDAFKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp TCSCCHHHHH---HHHHHHHHHHT--CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334444443 33344555442 2233466688888888888888855543333
No 159
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=27.37 E-value=93 Score=27.92 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=31.7
Q ss_pred chHHHHHhh------CCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 46 HLLDQLAAI------FPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 46 ~ll~~L~~l------FP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
..|.+|+.. -+..|+..|-|.|.+|.-|++.|++.|.+
T Consensus 41 ~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~ 84 (320)
T 3q8g_A 41 EALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVE 84 (320)
T ss_dssp HHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 346666655 35689999999999999999999999976
No 160
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=27.05 E-value=32 Score=26.46 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 57 DMDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 57 ~mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
.++.++|+.+|+.||.+...|.+.|.
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LG 82 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMG 82 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 34678899999999999999988764
No 161
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=26.94 E-value=1.2e+02 Score=22.42 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH
Q 023202 188 LKEQVEALIQENMILKRAVS-IQHER 212 (286)
Q Consensus 188 lKeq~~~l~~eN~iLKrAv~-IQheR 212 (286)
||-++..|.+||.-+|+.+. +||.|
T Consensus 12 lkDev~eLk~e~k~~k~~le~eqraR 37 (61)
T 3l4f_A 12 LKDEVQELRQDNKKMKKSLEEEQRAR 37 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665553 34433
No 162
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=26.73 E-value=1.7e+02 Score=23.82 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 180 SFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQL 237 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~ 237 (286)
.+.++...|..++..+..+-..||+|+.|-..= +...|..|+..+..==
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~---------~~~eL~~LI~KWr~as 52 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETARKVEAKN---------EDKDLQTLIQKWKNAA 52 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHHH
Confidence 467788889999999999999999998774321 1234555666665433
No 163
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.50 E-value=2.6e+02 Score=22.75 Aligned_cols=12 Identities=42% Similarity=0.443 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHh
Q 023202 230 VSQYQEQLRTLE 241 (286)
Q Consensus 230 v~qyqeq~r~LE 241 (286)
..+|++|++.|.
T Consensus 92 Ke~L~~ql~~Lq 103 (110)
T 2v4h_A 92 KEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445666666665
No 164
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=26.12 E-value=3.3e+02 Score=23.72 Aligned_cols=23 Identities=48% Similarity=0.576 Sum_probs=16.4
Q ss_pred cCCChHHHHHH-----------HHHHHHHHHHHH
Q 023202 147 SSSNIDDARAR-----------ASRALEILEKSI 169 (286)
Q Consensus 147 sAsd~dDARaR-----------AsRvLEafEKsi 169 (286)
.+..+.||+.| |.|+|++.|++.
T Consensus 44 a~~~ipdA~~rL~~Vv~~TE~AA~~iLd~vE~~~ 77 (214)
T 1kmi_Z 44 AAEAIPDARDRLYYVVQMTAQAAERALNSVEASQ 77 (214)
T ss_dssp TTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888 556666666654
No 165
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.64 E-value=1.6e+02 Score=20.37 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023202 216 YEDRSQELHHLKQLVSQYQEQLRTLET 242 (286)
Q Consensus 216 ~e~~~~E~~~lkqlv~qyqeq~r~LE~ 242 (286)
++.-.+|...-++=+..||.+++.||.
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777777778999999999983
No 166
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=25.37 E-value=3e+02 Score=23.07 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023202 215 EYEDRSQELHHLKQLVSQYQEQ 236 (286)
Q Consensus 215 e~e~~~~E~~~lkqlv~qyqeq 236 (286)
.|+-.-..|.|+|++|..|.++
T Consensus 117 Rc~yL~~KLsHIK~lI~~YD~~ 138 (140)
T 1xaw_A 117 HCKQLKSKLSHIKKMVGDYDRQ 138 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 4445567899999999999874
No 167
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.32 E-value=3.2e+02 Score=23.32 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023202 212 RQKEYEDRSQELHHLKQLVSQYQEQLRTLE 241 (286)
Q Consensus 212 R~~e~e~~~~E~~~lkqlv~qyqeq~r~LE 241 (286)
+.+..+..+.|+..|+--+...+++++.|+
T Consensus 94 K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 94 KNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555566666666666667777777
No 168
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=25.26 E-value=32 Score=32.43 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=31.6
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+..|.+|..+ +.+...+.+||..++||+|.|+.-|..
T Consensus 169 ~~~i~~l~~M--Gf~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 169 ETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp HHHHHHHHTT--TCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3457888887 688899999999999999999988854
No 169
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.93 E-value=1.8e+02 Score=21.81 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 023202 222 ELHHLKQLVSQYQEQLRTLETSWR 245 (286)
Q Consensus 222 E~~~lkqlv~qyqeq~r~LE~~~~ 245 (286)
-+..|.+.|.+-|.+|..|+..++
T Consensus 29 tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 29 ALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888888884433
No 170
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=24.90 E-value=2.6e+02 Score=22.08 Aligned_cols=10 Identities=0% Similarity=0.298 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 023202 231 SQYQEQLRTL 240 (286)
Q Consensus 231 ~qyqeq~r~L 240 (286)
..+++++..+
T Consensus 86 ~~~~~~~~~~ 95 (284)
T 1c1g_A 86 ASLNRRIQLF 95 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 171
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.68 E-value=42 Score=28.06 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=37.7
Q ss_pred CCCCCCCCCCccchHHHHHhhC----CCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcC
Q 023202 34 PVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELRLG 87 (286)
Q Consensus 34 p~rf~~p~~~~~~ll~~L~~lF----P~mD~q~le~aLe~cGndlDsAIksL~~L~L~ 87 (286)
.++|.||.. +.....|..++ -.+++..++.+.+.||.|+..|+.-|..+.++
T Consensus 160 ~i~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~ 215 (323)
T 1sxj_B 160 ILRYSKLSD--EDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG 215 (323)
T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EEeecCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 466777532 34445555433 25889999999999999999999999887643
No 172
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=24.55 E-value=2.8e+02 Score=22.34 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=25.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 023202 175 AEAAQSFHQENKMLKEQVEALIQ-------ENMILKRAVSIQHERQKE 215 (286)
Q Consensus 175 ae~~~~~~kEn~~lKeq~~~l~~-------eN~iLKrAv~IQheR~~e 215 (286)
..+-+.+|-|...||.++..++. |..-+-+|-.+-.+|...
T Consensus 41 ~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~ 88 (101)
T 4aj5_1 41 MRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSM 88 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHH
Confidence 33556678888888888877653 344455555555555443
No 173
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.27 E-value=1.3e+02 Score=20.09 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 023202 188 LKEQVEALIQENMILK 203 (286)
Q Consensus 188 lKeq~~~l~~eN~iLK 203 (286)
|...++.|+.+|..|.
T Consensus 6 LE~kVEeLl~~n~~Le 21 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHH
Confidence 4455566666665554
No 174
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.07 E-value=30 Score=29.86 Aligned_cols=58 Identities=19% Similarity=0.411 Sum_probs=41.5
Q ss_pred ccccCCCCCCCCCCCCCCccchHHHHHhhC----CCCC-HHHHHHHHHHcCCCHHHHHHHHhhhhcCc
Q 023202 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIF----PDMD-NQILDRALEECGDDLDSAIRSLNELRLGS 88 (286)
Q Consensus 26 R~Rcssssp~rf~~p~~~~~~ll~~L~~lF----P~mD-~q~le~aLe~cGndlDsAIksL~~L~L~s 88 (286)
|.|| ..++|.||.. +.....|..+. -.++ +..++.+.+.|+.|+-.|+.-|..+.+..
T Consensus 182 ~sR~---~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 182 KSQC---LLIRCPAPSD--SEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNN 244 (354)
T ss_dssp HTTS---EEEECCCCCH--HHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHTT
T ss_pred Hhhc---eEEecCCcCH--HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3466 2466777532 45666666543 2466 88999999999999999999999876643
No 175
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.56 E-value=2.2e+02 Score=25.48 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=24.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 178 AQSFHQENKMLKEQVEALIQENMILKRAV 206 (286)
Q Consensus 178 ~~~~~kEn~~lKeq~~~l~~eN~iLKrAv 206 (286)
-..||+++..|++.+..|..||.-||..+
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999887643
No 176
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=23.07 E-value=44 Score=27.90 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=38.2
Q ss_pred CCCCCCCCCCccchHHHHHhhC----CCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcC
Q 023202 34 PVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNELRLG 87 (286)
Q Consensus 34 p~rf~~p~~~~~~ll~~L~~lF----P~mD~q~le~aLe~cGndlDsAIksL~~L~L~ 87 (286)
.++|.||.. +.....|..++ ..+++..++...+.+|.|+..|+.-|..+.+.
T Consensus 155 ~i~~~~~~~--~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~ 210 (319)
T 2chq_A 155 VFRFKPVPK--EAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI 210 (319)
T ss_dssp EEECCCCCH--HHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred EEEecCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 466777532 44555555443 35799999999999999999999988887654
No 177
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=22.86 E-value=3.8e+02 Score=23.35 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 023202 180 SFHQENKMLKEQVEALIQ-----ENMILKRAVSIQHERQKEY 216 (286)
Q Consensus 180 ~~~kEn~~lKeq~~~l~~-----eN~iLKrAv~IQheR~~e~ 216 (286)
.++.++..|++|++.++. |+.++++=+.+-|+...-.
T Consensus 150 ~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KI 191 (213)
T 1ik9_A 150 RLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKI 191 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 356666777788877764 6778888889888875544
No 178
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.77 E-value=2.9e+02 Score=21.90 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 023202 221 QELHHLKQLVSQYQEQLRTLETSW 244 (286)
Q Consensus 221 ~E~~~lkqlv~qyqeq~r~LE~~~ 244 (286)
+|+..|+.-+.+++.++...++++
T Consensus 18 ~e~~~l~~~~~el~~~l~~~~~~~ 41 (125)
T 1joc_A 18 GEIEKLQTKVLELQRKLDNTTAAV 41 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666655443
No 179
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=22.60 E-value=76 Score=28.85 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 55 FPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 55 FP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
.|..|+..|-+.|.+|..|++.|.+.|.+-
T Consensus 30 l~~~dD~~LlRFLrarkfdv~~A~~~l~~~ 59 (403)
T 1olm_A 30 LPNPDDYFLLRWLRARSFDLQKSEAMLRKH 59 (403)
T ss_dssp SSCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 467999999999999999999999999763
No 180
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=22.57 E-value=85 Score=26.25 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 57 DMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 57 ~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
..|+..|-+.|.+|..|++.|.+.|.+-
T Consensus 30 ~~dd~~LlRFLra~k~dv~~A~~~l~~~ 57 (262)
T 1r5l_A 30 PLTDSFLLRFLRARDFDLDLAWRLLKNY 57 (262)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5799999999999999999999999763
No 181
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=22.21 E-value=2e+02 Score=21.20 Aligned_cols=9 Identities=22% Similarity=0.634 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 023202 200 MILKRAVSI 208 (286)
Q Consensus 200 ~iLKrAv~I 208 (286)
.||+.|+..
T Consensus 43 ~IL~~Ai~Y 51 (82)
T 1am9_A 43 AVLRKAIDY 51 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456666543
No 182
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.54 E-value=1.9e+02 Score=21.19 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 023202 218 DRSQELHHLKQL 229 (286)
Q Consensus 218 ~~~~E~~~lkql 229 (286)
++.||...|..|
T Consensus 36 e~eQEieRL~~L 47 (58)
T 3a2a_A 36 EKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 183
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=21.39 E-value=2.3e+02 Score=22.42 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhhhh
Q 023202 212 RQKEYEDRSQELHHLKQLVS------------QYQEQLRTLETSWR 245 (286)
Q Consensus 212 R~~e~e~~~~E~~~lkqlv~------------qyqeq~r~LE~~~~ 245 (286)
+...+++-..+++.|...|+ +||+.|.+|..++.
T Consensus 56 ~~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~ 101 (111)
T 2l3l_A 56 SVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALA 101 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 55556666777777777765 68999999885553
No 184
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.36 E-value=56 Score=23.03 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=10.7
Q ss_pred HhhHHHHHHHHHHHHHHH
Q 023202 179 QSFHQENKMLKEQVEALI 196 (286)
Q Consensus 179 ~~~~kEn~~lKeq~~~l~ 196 (286)
..+.+||..||++++.|.
T Consensus 37 ~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 37 EIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346667777777766654
No 185
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=21.32 E-value=2.3e+02 Score=20.44 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=35.4
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
++++.+-....|+-..+++-+-|+..+=|+.-|+--|.
T Consensus 10 e~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlL 47 (53)
T 2qho_B 10 EELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLL 47 (53)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHh
Confidence 78999999999999999999999999999999987654
No 186
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=20.67 E-value=87 Score=22.92 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=33.3
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
++-++.|-.+ +.|.+-+.+||.-+.||++.|---|.+.-.
T Consensus 8 e~~Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 8 SSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred hHHHHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 4556666655 789999999999999999999999988644
No 187
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.59 E-value=2.5e+02 Score=22.70 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhccchhhHHHHH
Q 023202 219 RSQELHHLKQLVSQYQEQLRTLETSWRLMTLMFDLVLSNQVNNYALTM 266 (286)
Q Consensus 219 ~~~E~~~lkqlv~qyqeq~r~LE~~~~~~~~~~~~~~~~~~~NyaL~~ 266 (286)
...|-..|+++-.++--+|+.||.-+++.+ ..|-.|..
T Consensus 49 le~e~~rlr~~~~~~~~~v~eLe~everL~----------~ENq~L~~ 86 (104)
T 3s9g_A 49 MEDENNRLRLESKRLDARVRELELELDRLR----------AENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHH----------HHHHHHHH
Confidence 445556667777788889999999888888 77766653
No 188
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.32 E-value=1.7e+02 Score=19.47 Aligned_cols=15 Identities=7% Similarity=0.253 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 023202 188 LKEQVEALIQENMIL 202 (286)
Q Consensus 188 lKeq~~~l~~eN~iL 202 (286)
|..+++.|+.+|..|
T Consensus 6 LEdKVEeLl~~~~~L 20 (34)
T 3c3f_A 6 IEXKLEXILSXLYHX 20 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHH
Confidence 334455555555444
No 189
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.01 E-value=4.5e+02 Score=25.55 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCHHHHHHHHhh
Q 023202 63 LDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 63 le~aLe~cGndlDsAIksL~~ 83 (286)
|...|.+-..||-..|..|++
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~ 74 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRD 74 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 777888888899999999888
Done!