Query 023202
Match_columns 286
No_of_seqs 66 out of 68
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 18:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023202.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023202hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 98.3 4.7E-07 3.4E-11 65.3 5.2 43 45-87 10-52 (59)
2 d1mn3a_ a.5.2.4 (A:) Vacuolar 98.2 6.2E-07 4.5E-11 63.7 4.1 39 46-84 14-52 (54)
3 d2di0a1 a.5.2.4 (A:8-70) Activ 95.8 0.0063 4.6E-07 43.9 5.2 39 45-83 7-45 (63)
4 d1vg5a_ a.5.2.1 (A:) Rhomboid 89.7 0.93 6.7E-05 32.2 8.2 38 44-83 29-66 (73)
5 d1xb2b1 a.5.2.2 (B:56-111) Elo 89.2 0.11 8.2E-06 36.2 2.7 37 47-84 7-43 (56)
6 d1aipc1 a.5.2.2 (C:2-53) Elong 87.1 0.19 1.4E-05 34.6 2.7 23 62-84 19-41 (52)
7 d1efub3 a.5.2.2 (B:1-54) Elong 86.5 0.21 1.5E-05 34.6 2.7 40 46-86 6-45 (54)
8 d1wjia_ a.5.2.1 (A:) Tudor dom 86.1 1.2 8.8E-05 30.6 6.7 37 45-83 10-46 (63)
9 d2daha1 a.5.2.1 (A:8-48) Ubiqu 82.9 0.62 4.5E-05 30.4 3.7 35 48-83 6-40 (41)
10 d1wgna_ a.5.2.1 (A:) Ubiquitin 80.9 0.55 4E-05 32.7 3.1 37 45-83 20-56 (63)
11 d1seta1 a.2.7.1 (A:1-110) Sery 80.6 8.2 0.0006 27.9 11.3 77 163-241 12-91 (110)
12 d1v92a_ a.5.2.3 (A:) NSFL1 (p9 80.4 1.1 8.2E-05 29.2 4.4 38 45-83 6-43 (46)
13 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 78.8 1.1 7.9E-05 30.4 3.9 35 48-83 12-46 (50)
14 d2py8a1 a.280.1.1 (A:2-121) Ru 76.6 1.8 0.00013 33.9 5.3 29 129-166 47-75 (120)
15 d2bwba1 a.5.2.1 (A:328-371) DS 75.3 1.4 0.0001 29.1 3.6 34 48-82 9-42 (44)
16 d1oqya1 a.5.2.1 (A:160-200) DN 74.7 0.55 4E-05 30.3 1.4 35 45-81 5-39 (41)
17 d2peoa1 a.280.1.1 (A:1-115) Ru 74.0 3.3 0.00024 32.0 6.1 29 130-167 48-76 (115)
18 d1veja1 a.5.2.1 (A:8-68) 49314 73.1 1.7 0.00012 30.5 3.8 35 47-82 25-59 (61)
19 d1wiva_ a.5.2.1 (A:) Ubiquitin 72.7 1.9 0.00014 30.5 4.1 37 45-83 30-66 (73)
20 d1otra_ a.5.2.4 (A:) Protein C 70.5 2.9 0.00021 27.9 4.3 38 45-82 5-42 (49)
21 d2peqa1 a.280.1.1 (A:2-109) Ru 67.9 3.5 0.00026 31.5 5.0 30 129-167 47-76 (108)
22 d1vdla_ a.5.2.1 (A:) Ubiquitin 67.7 8.8 0.00064 28.0 6.9 42 44-85 24-65 (80)
23 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 67.2 6.8 0.0005 26.0 5.8 37 45-83 13-50 (51)
24 d1umqa_ a.4.1.12 (A:) Photosyn 67.0 1.4 0.00011 29.7 2.3 25 58-82 20-44 (60)
25 d2onda1 a.118.8.7 (A:242-549) 58.7 33 0.0024 26.9 9.6 35 130-172 199-233 (308)
26 d1whca_ a.5.2.1 (A:) UBA/UBX 3 57.8 8.7 0.00063 26.2 5.0 37 45-83 10-47 (64)
27 d1sxjd2 c.37.1.20 (D:26-262) R 53.7 3.1 0.00022 31.9 2.3 54 26-84 156-213 (237)
28 d2onda1 a.118.8.7 (A:242-549) 52.9 31 0.0022 27.1 8.5 40 135-174 9-48 (308)
29 d1sxjb1 a.80.1.1 (B:231-322) R 47.3 40 0.0029 23.3 8.5 73 59-175 2-75 (92)
30 d1nkpa_ a.38.1.1 (A:) Myc prot 45.4 31 0.0023 23.8 6.6 40 200-239 45-84 (88)
31 d1njfa_ c.37.1.20 (A:) delta p 40.9 9.8 0.00072 29.9 3.5 54 25-83 162-219 (239)
32 d2g3qa1 a.5.2.1 (A:1339-1381) 40.8 16 0.0012 23.9 3.9 37 45-83 5-41 (43)
33 d1nkpb_ a.38.1.1 (B:) Max prot 40.7 31 0.0023 23.5 5.9 38 200-237 40-77 (83)
34 d2crna1 a.5.2.1 (A:8-58) Suppr 40.1 25 0.0018 22.9 4.9 37 46-84 4-41 (51)
35 d1sxjb2 c.37.1.20 (B:7-230) Re 39.8 7.1 0.00052 30.1 2.4 54 26-84 149-206 (224)
36 d1etxa_ a.4.1.12 (A:) FIS prot 38.6 7.6 0.00056 27.8 2.2 27 56-82 47-73 (89)
37 d1ntca_ a.4.1.12 (A:) DNA-bind 36.5 3.1 0.00023 29.4 -0.3 29 54-82 47-75 (91)
38 d1g2ha_ a.4.1.12 (A:) Transcri 36.0 13 0.00098 24.7 3.1 28 54-82 17-44 (61)
39 d1olma1 a.5.3.1 (A:1-75) Super 35.1 18 0.0013 24.4 3.7 29 55-83 30-58 (75)
40 d1r5la1 a.5.3.1 (A:25-90) Alph 34.9 28 0.002 23.4 4.6 27 58-84 23-49 (66)
41 d1ivsa1 a.2.7.3 (A:797-862) Va 34.8 47 0.0035 21.8 5.9 61 181-244 2-62 (66)
42 d1oaia_ a.5.2.3 (A:) FG-bindin 34.5 24 0.0017 23.8 4.2 33 56-88 18-50 (59)
43 d2apla1 a.258.1.1 (A:2-150) Hy 33.6 26 0.0019 28.1 4.9 36 147-182 26-61 (149)
44 d1wj7a1 a.5.2.1 (A:8-98) Ubiqu 33.0 12 0.00084 28.0 2.5 21 63-83 50-70 (91)
45 d2p90a1 c.56.8.1 (A:6-274) Hyp 31.7 45 0.0033 27.0 6.3 55 149-207 201-255 (269)
46 d2k0bx1 a.5.2.1 (X:1-52) Seque 29.8 17 0.0012 24.7 2.6 24 59-82 25-48 (52)
47 d1nkpa_ a.38.1.1 (A:) Myc prot 29.3 76 0.0055 21.7 6.4 30 177-206 53-82 (88)
48 d1sxjc2 c.37.1.20 (C:12-238) R 27.7 14 0.00099 28.2 2.1 53 26-83 147-203 (227)
49 d1qvra2 c.37.1.20 (A:149-535) 27.3 98 0.0071 26.8 8.2 22 32-53 44-65 (387)
50 d1nlwa_ a.38.1.1 (A:) Mad prot 26.5 62 0.0045 21.7 5.4 28 177-204 48-75 (79)
51 d1b0nb_ a.34.1.1 (B:) SinI ant 26.1 26 0.0019 21.2 2.8 13 134-146 4-16 (31)
52 d1sxje2 c.37.1.20 (E:4-255) Re 23.5 21 0.0015 27.1 2.6 57 26-87 179-240 (252)
53 d1h2vc3 a.118.1.14 (C:481-790) 23.5 91 0.0066 26.7 7.1 56 185-240 212-281 (310)
54 d1zela1 a.4.5.83 (A:1-82) Hypo 22.3 20 0.0014 25.7 2.0 16 69-84 43-58 (82)
55 d1lvfa_ a.47.2.1 (A:) Syntaxin 22.3 1.3E+02 0.0092 21.4 6.7 52 191-242 50-101 (106)
56 d1nkpb_ a.38.1.1 (B:) Max prot 21.8 1.1E+02 0.008 20.5 6.4 30 177-206 48-77 (83)
57 d1am9a_ a.38.1.1 (A:) SREBP-1a 21.1 1.1E+02 0.0083 20.5 6.0 29 200-228 43-71 (80)
58 d1u5pa2 a.7.1.1 (A:1772-1872) 20.7 98 0.0071 20.2 5.4 11 136-146 12-22 (101)
59 d1auaa1 a.5.3.1 (A:4-96) N-ter 20.7 51 0.0037 23.4 4.1 38 46-83 32-75 (93)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.27 E-value=4.7e-07 Score=65.32 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=39.3
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcC
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRLG 87 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L~ 87 (286)
+..+..|+.+||+||+.+|+.+|++|+.++|.||..|.++.-.
T Consensus 10 Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Msd~ 52 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence 4569999999999999999999999999999999999886543
No 2
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.18 E-value=6.2e-07 Score=63.69 Aligned_cols=39 Identities=23% Similarity=0.468 Sum_probs=36.2
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
..+..|+.+||+||..||+.+|++||.++|.||.+|.++
T Consensus 14 e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~M 52 (54)
T d1mn3a_ 14 DTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 357889999999999999999999999999999999765
No 3
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.83 E-value=0.0063 Score=43.89 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=37.1
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
++++.+.+.+|||+...++.+.|+..|+|.+.+|-.|-+
T Consensus 7 ~s~I~qV~Dl~PdLG~GFi~~~L~~Y~~n~E~vI~~lLe 45 (63)
T d2di0a1 7 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 45 (63)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 467999999999999999999999999999999999988
No 4
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=89.67 E-value=0.93 Score=32.23 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=33.6
Q ss_pred ccchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 44 RSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 44 ~~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
.+..|.+|..+ +.+.+...+||+.|++|++.||.-|.+
T Consensus 29 ~ee~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~Ll~ 66 (73)
T d1vg5a_ 29 SEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHh--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35678999888 578999999999999999999999876
No 5
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=89.17 E-value=0.11 Score=36.23 Aligned_cols=37 Identities=32% Similarity=0.342 Sum_probs=26.3
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 47 ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
+|-+||..= +-.---..+||++||+|+|.||.-|..-
T Consensus 7 lvk~LRe~T-ga~~~dcKkAL~e~~gD~ekA~e~Lrkk 43 (56)
T d1xb2b1 7 LLMKLRRKT-GYSFINCKKALETCGGDLKQAESWLHKQ 43 (56)
T ss_dssp HHHHHHHHH-CCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455555442 2223346799999999999999999863
No 6
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=87.07 E-value=0.19 Score=34.57 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhh
Q 023202 62 ILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 62 ~le~aLe~cGndlDsAIksL~~L 84 (286)
-..+||++||+|||.||.-|...
T Consensus 19 dcKkAL~e~~gD~ekA~e~Lr~~ 41 (52)
T d1aipc1 19 DVKRALEDAGWDEEKAVQLLRER 41 (52)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 35799999999999999999874
No 7
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=86.50 E-value=0.21 Score=34.57 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=28.0
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhhc
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELRL 86 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~L 86 (286)
.+|-+||..= +..---..+||++||+|+|.||.-|..--+
T Consensus 6 ~~iK~LR~~T-gag~~dCKkAL~e~~gD~ekA~e~Lr~kG~ 45 (54)
T d1efub3 6 SLVKELRERT-GAGMMDCKKALTEANGDIELAIENMRKSGA 45 (54)
T ss_dssp HHHHHHHHHH-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHHHhH
Confidence 4555565542 222333679999999999999999987543
No 8
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.15 E-value=1.2 Score=30.60 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=34.2
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+..|.+|-.+ +.+.....+||..|+||++.|+.-|-+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~~wL~~ 46 (63)
T d1wjia_ 10 EKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4678999988 899999999999999999999999988
No 9
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.91 E-value=0.62 Score=30.38 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=27.4
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 48 LDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 48 l~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+++|+.+ =-.|.+.--+||..+|-|++.||+.|..
T Consensus 6 L~~L~~M-GF~d~~~Ni~AL~~t~Gdv~~Aie~Ll~ 40 (41)
T d2daha1 6 LEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ 40 (41)
T ss_dssp HHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5666665 1246778889999999999999999864
No 10
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=80.85 E-value=0.55 Score=32.70 Aligned_cols=37 Identities=11% Similarity=0.298 Sum_probs=32.4
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+..|.+|..+ +.++....+||..||||++.|+.-|-.
T Consensus 20 e~~v~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~Lls 56 (63)
T d1wgna_ 20 RQCVETVVNM--GYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5678888887 557899999999999999999999877
No 11
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=80.61 E-value=8.2 Score=27.91 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhh---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 163 EILEKSICARAS---AEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 163 EafEKsi~~ra~---ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~ 239 (286)
+.|.+++..|-. -+..-.+.++...++.+++.|..+.+.+-+-|.. . ...+.++.-.|...|+.-+..+.+++++
T Consensus 12 e~v~~~l~~R~~~~~ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k-~-~~~~~~~l~~~~k~lk~~i~~le~~~~~ 89 (110)
T d1seta1 12 EVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPK-A-PPEEKEALIARGKALGEEAKRLEEALRE 89 (110)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666655532 2334456667777888888888877766655542 1 1223344456777777777777777777
Q ss_pred Hh
Q 023202 240 LE 241 (286)
Q Consensus 240 LE 241 (286)
+|
T Consensus 90 ~~ 91 (110)
T d1seta1 90 KE 91 (110)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 12
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=80.36 E-value=1.1 Score=29.24 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=33.5
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+.+|.++..+ -+.++..-...|+.|+.||+.||..+-+
T Consensus 6 ~~lI~qF~~i-Tg~~~~~A~~~Le~~~w~Le~Ai~~yfe 43 (46)
T d1v92a_ 6 QDALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHH-HCcCHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 4688888886 7899999999999999999999987654
No 13
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=78.84 E-value=1.1 Score=30.41 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=28.7
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 48 LDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 48 l~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
|.+|+.+ =-.|.+.--+||+.||-|+.+||+.|.+
T Consensus 12 L~qL~~M-GF~d~~~Ni~AL~~t~GdV~~Aie~Ll~ 46 (50)
T d2dnaa1 12 MECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKS 46 (50)
T ss_dssp HHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5667765 2347888889999999999999999875
No 14
>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]}
Probab=76.57 E-value=1.8 Score=33.86 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=20.8
Q ss_pred cCCCChhhHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 023202 129 VFQLDGPEWVELFVREMMSSSNIDDARARASRALEILE 166 (286)
Q Consensus 129 ~~p~~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafE 166 (286)
+-+.||..|++.|++| ..+ =|.||+++=|
T Consensus 47 ~~~~DGd~fl~~L~~e---~~~------lAlRIm~vRe 75 (120)
T d2py8a1 47 HSIQNGETFLTELLDE---NKE------LVLRILAVRE 75 (120)
T ss_dssp SCCSSHHHHHHHHHTT---CHH------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhh---CHH------HHHHHHHHHH
Confidence 3456899999999986 222 2888887644
No 15
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=75.29 E-value=1.4 Score=29.05 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=27.5
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 48 LDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 48 l~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
|.+|+.+ =-.|.+.--+||+.||-|+.+||+.|-
T Consensus 9 L~qL~~M-GF~d~~~Ni~AL~~t~GdV~~Aie~Ll 42 (44)
T d2bwba1 9 LRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 42 (44)
T ss_dssp HHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHh
Confidence 5666654 235788888999999999999999875
No 16
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.67 E-value=0.55 Score=30.30 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=28.6
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSL 81 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL 81 (286)
+..|.+|-.+ +.++....+||..|+||++.||.-|
T Consensus 5 e~~i~~L~~M--GF~~~~a~~AL~~~~~N~e~A~~~L 39 (41)
T d1oqya1 5 ETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYL 39 (41)
T ss_dssp HHHHHHHHTT--TCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 3456677665 5788999999999999999999765
No 17
>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]}
Probab=73.97 E-value=3.3 Score=31.99 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=20.7
Q ss_pred CCCChhhHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 023202 130 FQLDGPEWVELFVREMMSSSNIDDARARASRALEILEK 167 (286)
Q Consensus 130 ~p~~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafEK 167 (286)
-+.||..|++.|++| . +.=|-||+++=|-
T Consensus 48 ~~~DGd~~l~~L~~e---~------~~lA~RIm~vR~~ 76 (115)
T d2peoa1 48 KVQDGEKYIEELFLE---K------PDLALRIMTVREH 76 (115)
T ss_dssp --CCHHHHHHHHHHH---C------HHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhh---C------HHHHHHHHHHHHH
Confidence 356899999999998 2 2238888886554
No 18
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=73.08 E-value=1.7 Score=30.49 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=28.6
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 47 LLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 47 ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
=|.+|+.+ =-.|.+.--+||..||.|+..||+.|.
T Consensus 25 QL~qL~eM-GF~d~~~Nl~AL~~t~Gdv~~Aie~Ll 59 (61)
T d1veja1 25 ELEELKAL-GFANRDANLQALVATDGDIHAAIEMLL 59 (61)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 37778776 224788888999999999999999885
No 19
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=72.66 E-value=1.9 Score=30.51 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=32.9
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+..|.+|-.+ +.+.+...+||..||||++.||.-|-+
T Consensus 30 ~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~Av~~Lls 66 (73)
T d1wiva_ 30 QSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4678888887 578999999999999999999998876
No 20
>d1otra_ a.5.2.4 (A:) Protein Cue2 (hypothetical protein YKL090W) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=70.48 E-value=2.9 Score=27.85 Aligned_cols=38 Identities=32% Similarity=0.385 Sum_probs=33.3
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
++-+.-|-.+||.+..--|.-.|-+.+||||-.|--|.
T Consensus 5 esklsilmdmfpaisksklqvhllennndldltiglll 42 (49)
T d1otra_ 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLL 42 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhheehhhccCCcccceeeeee
Confidence 34578899999999999999999999999999997654
No 21
>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002 [TaxId: 32049]}
Probab=67.90 E-value=3.5 Score=31.53 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=22.3
Q ss_pred cCCCChhhHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 023202 129 VFQLDGPEWVELFVREMMSSSNIDDARARASRALEILEK 167 (286)
Q Consensus 129 ~~p~~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafEK 167 (286)
+-+.||..|++.|++| + +.=|.||+++=|-
T Consensus 47 ~~~~DGd~~l~~L~~e-----~----~~lA~RIm~vR~~ 76 (108)
T d2peqa1 47 HPIQESDLYLEAMMLE-----N----KELVLRILTVREN 76 (108)
T ss_dssp SCTTSHHHHHHHHHTT-----C----HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhh-----C----HHHHHHHHHHHHH
Confidence 3457999999999998 2 2338899886554
No 22
>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=67.72 E-value=8.8 Score=28.04 Aligned_cols=42 Identities=31% Similarity=0.397 Sum_probs=38.4
Q ss_pred ccchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhhhh
Q 023202 44 RSHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNELR 85 (286)
Q Consensus 44 ~~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~L~ 85 (286)
.-.+|.+|+.|=--=|+++|..||.++..||..|+-.|.+=+
T Consensus 24 qQ~lLNQLrEITGIqD~q~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T d1vdla_ 24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhcCCCHHHHHHHHhcCC
Confidence 457899999999999999999999999999999999998743
No 23
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.24 E-value=6.8 Score=25.97 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=32.1
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCC-CHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGD-DLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGn-dlDsAIksL~~ 83 (286)
++.|.+|..+ +.+....++||..+|| |++.|+.-|-+
T Consensus 13 ~~~l~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~~WLl~ 50 (51)
T d2cpwa1 13 GSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFS 50 (51)
T ss_dssp CCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence 4678999987 6889999999999999 99999987754
No 24
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=67.05 E-value=1.4 Score=29.67 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 58 MDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 58 mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
+..+.|.++|+.||.++..|.+.|.
T Consensus 20 ~Er~~I~~aL~~~~gn~~~aA~~LG 44 (60)
T d1umqa_ 20 VRWEHIQRIYEMCDRNVSETARRLN 44 (60)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHC
Confidence 4788999999999999999999875
No 25
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=58.66 E-value=33 Score=26.90 Aligned_cols=35 Identities=6% Similarity=-0.009 Sum_probs=24.3
Q ss_pred CCCChhhHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 023202 130 FQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICAR 172 (286)
Q Consensus 130 ~p~~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafEKsi~~r 172 (286)
.|.++.-|+..+--|. .-.|++.|| .+||++|...
T Consensus 199 ~p~~~~~w~~y~~~~~-~~g~~~~aR-------~~fe~ai~~~ 233 (308)
T d2onda1 199 YGDIPEYVLAYIDYLS-HLNEDNNTR-------VLFERVLTSG 233 (308)
T ss_dssp HTTCHHHHHHHHHHHH-TTCCHHHHH-------HHHHHHHHSS
T ss_pred hhhhHHHHHHHHHHHH-HcCChHHHH-------HHHHHHHHhC
Confidence 5677888888775555 445666544 5899988764
No 26
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=57.79 E-value=8.7 Score=26.25 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.3
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCC-CHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGD-DLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGn-dlDsAIksL~~ 83 (286)
+..|.+|..+ +++....++||..||| +++.|+.-|.+
T Consensus 10 ~~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~Wl~~ 47 (64)
T d1whca_ 10 LTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4678999886 7889999999999998 89999999988
No 27
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=53.66 E-value=3.1 Score=31.88 Aligned_cols=54 Identities=30% Similarity=0.457 Sum_probs=40.2
Q ss_pred ccccCCCCCCCCCCCCCCccchHHHHHhhCC----CCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIFP----DMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 26 R~Rcssssp~rf~~p~~~~~~ll~~L~~lFP----~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
|.||. -++|.+|.. +.+...|..++. .+|+++|+.+.+.|+.|+-.||..|...
T Consensus 156 ~sr~~---~i~f~~~~~--~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~~~ 213 (237)
T d1sxjd2 156 ASQCS---KFRFKALDA--SNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSA 213 (237)
T ss_dssp HHHSE---EEECCCCCH--HHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHT
T ss_pred cchhh---hhccccccc--cccchhhhhhhhhhcCcCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44662 367887633 566777777644 6899999999999999999999766543
No 28
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=52.93 E-value=31 Score=27.08 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 023202 135 PEWVELFVREMMSSSNIDDARARASRALEILEKSICARAS 174 (286)
Q Consensus 135 ~eWVEl~V~EM~sAsd~dDARaRAsRvLEafEKsi~~ra~ 174 (286)
.-|.+.+-=|+.+-.+.+|...--.||..+||+++.....
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~ 48 (308)
T d2onda1 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH 48 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCC
Confidence 3488887779998888888888788999999999998655
No 29
>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.29 E-value=40 Score=23.29 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHcCCCHHHHHHHHhhhhcCcCCCCCCCCCCCcchhhhhhccccccCCCCCCCCCCCCccccCCCChhhHH
Q 023202 59 DNQILDRALEECGDDLDSAIRSLNELRLGSADNNLGSVAGKSDLAADANAQGVATTNGEVPSPDDPSASKVFQLDGPEWV 138 (286)
Q Consensus 59 D~q~le~aLe~cGndlDsAIksL~~L~L~sa~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~~g~eWV 138 (286)
+|+.++++|..| +++.|++.+.++-... | .++.++|
T Consensus 2 ~P~~I~~il~~~--~f~~a~~~l~~~l~~~---------------------G---------------------ys~~DIi 37 (92)
T d1sxjb1 2 HPLIVKKMLLAS--NLEDSIQILRTDLWKK---------------------G---------------------YSSIDIV 37 (92)
T ss_dssp CHHHHHHHHSCS--SHHHHHHHHHHTTTTT---------------------T---------------------CCHHHHH
T ss_pred CHHHHHHHHHhC--CHHHHHHHHHHHHHHc---------------------C---------------------CCHHHHH
Confidence 588899999766 7999999998853211 1 2478999
Q ss_pred HHHHHHHhcCCChHH-HHHHHHHHHHHHHHHHHHHhhH
Q 023202 139 ELFVREMMSSSNIDD-ARARASRALEILEKSICARASA 175 (286)
Q Consensus 139 El~V~EM~sAsd~dD-ARaRAsRvLEafEKsi~~ra~a 175 (286)
..|.+...+..+++| .|.+=.+.+--.|.-+..-+..
T Consensus 38 ~~l~~~i~~~~~~~e~~k~~il~~la~~~~rl~~G~~e 75 (92)
T d1sxjb1 38 TTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGT 75 (92)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999998778765 5677777777777777776655
No 30
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.44 E-value=31 Score=23.81 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 200 MILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRT 239 (286)
Q Consensus 200 ~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~ 239 (286)
.||+.|+..=..-+++.+....++..|++-..+++.+|..
T Consensus 45 ~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 84 (88)
T d1nkpa_ 45 VILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555554433333333333333333344333334444333
No 31
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=40.87 E-value=9.8 Score=29.93 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=39.3
Q ss_pred cccccCCCCCCCCCCCCCCccchHHHHHhh----CCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 25 KRIRCSSSSPVRFSPPRSSRSHLLDQLAAI----FPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 25 KR~Rcssssp~rf~~p~~~~~~ll~~L~~l----FP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
=|.||. -++|.+|.. ..+...|..+ -+.+|++.++.....|+.|+-.||..|..
T Consensus 162 i~SRc~---~i~~~~~~~--~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~ 219 (239)
T d1njfa_ 162 ILSRCL---QFHLKALDV--EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 219 (239)
T ss_dssp HHTTSE---EEECCCCCH--HHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred Hhhhhc---ccccccCcH--HHhhhHHHHHHhhhccCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 355774 466777532 4555555554 36899999999999999999999987754
No 32
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=40.82 E-value=16 Score=23.92 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=29.5
Q ss_pred cchHHHHHhhCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 45 SHLLDQLAAIFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 45 ~~ll~~L~~lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
+.-|..|-.+ +.+++-..+||+.|+-|+++|.-.|.+
T Consensus 5 ~~ai~eL~~M--GF~e~~A~~AL~k~~wnleaAtN~LLd 41 (43)
T d2g3qa1 5 SLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3445666555 678899999999999999999988764
No 33
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.73 E-value=31 Score=23.54 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 200 MILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQL 237 (286)
Q Consensus 200 ~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~ 237 (286)
.||+.|+..=+.-+.+.....+++..|++-..+.+.+|
T Consensus 40 ~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l 77 (83)
T d1nkpb_ 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554433333333333333333333333333333
No 34
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.14 E-value=25 Score=22.86 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=32.0
Q ss_pred chHHHHHhhCCCCCHHHHHHHHHHcCC-CHHHHHHHHhhh
Q 023202 46 HLLDQLAAIFPDMDNQILDRALEECGD-DLDSAIRSLNEL 84 (286)
Q Consensus 46 ~ll~~L~~lFP~mD~q~le~aLe~cGn-dlDsAIksL~~L 84 (286)
..|.+|..+ +++....++||..+|| ++..|+.-|.+.
T Consensus 4 ~~v~~L~~M--GF~~~~a~~Al~~t~n~~ve~A~~Wl~~h 41 (51)
T d2crna1 4 SLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDH 41 (51)
T ss_dssp SSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHCCCCHHHHHHHHHHc
Confidence 568888876 6889999999999987 999999998873
No 35
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.76 E-value=7.1 Score=30.06 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=37.8
Q ss_pred ccccCCCCCCCCCCCCCCccchHHHHHhh----CCCCCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAI----FPDMDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 26 R~Rcssssp~rf~~p~~~~~~ll~~L~~l----FP~mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
|.||. -++|.+|.. +.+...|..+ =-.++++.++.+...|+.|+-.||..|-..
T Consensus 149 ~sr~~---~i~~~~~~~--~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~ 206 (224)
T d1sxjb2 149 QSQCA---ILRYSKLSD--EDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 206 (224)
T ss_dssp HTTSE---EEECCCCCH--HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH---Hhhhcccch--hhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44663 367888633 4444444421 226799999999999999999999888653
No 36
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=38.57 E-value=7.6 Score=27.77 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 56 PDMDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 56 P~mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
..++.++|+.||+.||.+.-.|.+.|.
T Consensus 47 ~e~E~~~i~~aL~~~~gn~~~aA~~LG 73 (89)
T d1etxa_ 47 AEVEQPLLDMVMQYTRGNATRAALMMG 73 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHC
Confidence 347888999999999999999998874
No 37
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=36.45 E-value=3.1 Score=29.36 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=24.0
Q ss_pred hCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 54 IFPDMDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 54 lFP~mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
+...++..+|+.||+.||.++-.|.+.|.
T Consensus 47 ~~~~~E~~lI~~aL~~~~Gn~~~AA~~LG 75 (91)
T d1ntca_ 47 AQPELERTLLTTALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHC
Confidence 33456788999999999999999988774
No 38
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=35.98 E-value=13 Score=24.67 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=20.7
Q ss_pred hCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 54 IFPDMDNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 54 lFP~mD~q~le~aLe~cGndlDsAIksL~ 82 (286)
+--.++.++|+.+|+.||| ...|.+.|.
T Consensus 17 ~~~~~Er~~I~~aL~~~gn-~~~aA~~Lg 44 (61)
T d1g2ha_ 17 IIGFYEAQVLKLFYAEYPS-TRKLAQRLG 44 (61)
T ss_dssp SCSHHHHHHHHHHHHHSCS-HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCC-HHHHHHHHC
Confidence 3344578999999999986 566766653
No 39
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.12 E-value=18 Score=24.39 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 55 FPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 55 FP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
-|..|+..|-+.|.++.-|++.|.+.|.+
T Consensus 30 ~~~~dd~~LlRFLrAr~fdv~kA~~ml~~ 58 (75)
T d1olma1 30 LPNPDDYFLLRWLRARSFDLQKSEAMLRK 58 (75)
T ss_dssp SSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778999999999999999999999976
No 40
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.85 E-value=28 Score=23.40 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHHhhh
Q 023202 58 MDNQILDRALEECGDDLDSAIRSLNEL 84 (286)
Q Consensus 58 mD~q~le~aLe~cGndlDsAIksL~~L 84 (286)
+|++.|-+.|-+|..|++.|.+-|.+.
T Consensus 23 ~dD~~LlrFLRarkf~~~ka~~~l~~y 49 (66)
T d1r5la1 23 LTDSFLLRFLRARDFDLDLAWRLLKNY 49 (66)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 689999999999999999999888764
No 41
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=34.84 E-value=47 Score=21.81 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023202 181 FHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLETSW 244 (286)
Q Consensus 181 ~~kEn~~lKeq~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~~~ 244 (286)
+.+|...|...++.+..+-..+..-+.-..-..+.=++-+. .-++-+..|+.++..|+.++
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~---~~k~kl~~~~~~~~~l~~~l 62 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVE---AEEARLKENLEQAERIREAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777766666665544433332222222122 22445677778887777444
No 42
>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.55 E-value=24 Score=23.82 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcCc
Q 023202 56 PDMDNQILDRALEECGDDLDSAIRSLNELRLGS 88 (286)
Q Consensus 56 P~mD~q~le~aLe~cGndlDsAIksL~~L~L~s 88 (286)
=+|-.+--++.||+.|=|++.||..+.+|.-.+
T Consensus 18 T~mn~e~s~~cLe~~~Wd~~~A~~~F~~l~~~~ 50 (59)
T d1oaia_ 18 SGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKG 50 (59)
T ss_dssp HCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Confidence 478888999999999999999999999886533
No 43
>d2apla1 a.258.1.1 (A:2-150) Hypothetical protein PG0816 {Porphyromonas gingivalis [TaxId: 837]}
Probab=33.61 E-value=26 Score=28.05 Aligned_cols=36 Identities=25% Similarity=0.162 Sum_probs=28.6
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhH
Q 023202 147 SSSNIDDARARASRALEILEKSICARASAEAAQSFH 182 (286)
Q Consensus 147 sAsd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~ 182 (286)
.|.|..=-++||.++.++||+++.+-...+.++.+.
T Consensus 26 ~a~D~~FI~~Rad~Aa~aYe~A~~~G~~~~~a~e~A 61 (149)
T d2apla1 26 MSGNNPFITARSDEALTAYCDAVAQGFSHPEAESMA 61 (149)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 356666678999999999999999988887655433
No 44
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.03 E-value=12 Score=27.98 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=17.6
Q ss_pred HHHHHHHcCCCHHHHHHHHhh
Q 023202 63 LDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 63 le~aLe~cGndlDsAIksL~~ 83 (286)
+.=||-.|.+|++.||-.|.+
T Consensus 50 ~~~ALhDcn~D~~~AIn~lLE 70 (91)
T d1wj7a1 50 CVIALHDCNGDVNRAINVLLE 70 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHhcCCccHHHHHHHHHh
Confidence 456889999999999988876
No 45
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=31.74 E-value=45 Score=27.02 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 149 SNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVS 207 (286)
Q Consensus 149 sd~dDARaRAsRvLEafEKsi~~ra~ae~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv~ 207 (286)
.+..|.|| |..+|++++|.+-=...- ..+.+|-...+++++.++++|.=++.-|.
T Consensus 201 ~~~pdP~A-A~~lL~~l~~~~gl~id~---~~L~e~Ae~~e~~i~~l~e~~~e~~~~v~ 255 (269)
T d2p90a1 201 SASPYPAA-TLKLLQSIADSADLNLPL---LALERDAEKVHRQLMEQTEESSEIQRVVG 255 (269)
T ss_dssp TTSCCHHH-HHHHHHHHHHHHTCCCCC---HHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCCCCHHH-HHHHHHHHHHHHCCCCCh---HHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 45567777 667899999976433322 33677777777777777777665555443
No 46
>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.83 E-value=17 Score=24.66 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHcCCCHHHHHHHHh
Q 023202 59 DNQILDRALEECGDDLDSAIRSLN 82 (286)
Q Consensus 59 D~q~le~aLe~cGndlDsAIksL~ 82 (286)
+-.-|-+.|+.++.||..|+..+.
T Consensus 25 eGGWLt~LL~skn~dI~~aLD~iq 48 (52)
T d2k0bx1 25 EGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp SSSCHHHHHHHTTSCHHHHHHHTT
T ss_pred cchHHHHHHHHcCCCHHHHHHHHh
Confidence 345688999999999999998765
No 47
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.33 E-value=76 Score=21.66 Aligned_cols=30 Identities=20% Similarity=0.177 Sum_probs=17.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILKRAV 206 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv 206 (286)
-++.+++++..|+++++.|.++|..|...+
T Consensus 53 yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l 82 (88)
T d1nkpa_ 53 YILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666655555554433
No 48
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.66 E-value=14 Score=28.16 Aligned_cols=53 Identities=15% Similarity=0.325 Sum_probs=36.5
Q ss_pred ccccCCCCCCCCCCCCCCccchHHHHHhhC----CCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIF----PDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 26 R~Rcssssp~rf~~p~~~~~~ll~~L~~lF----P~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
|.||. -++|.+|.. +.+...|..+. =..+++.++.+.+.|+.|+-.||-.|..
T Consensus 147 ~sr~~---~i~~~~~~~--~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~Gd~R~ain~Lq~ 203 (227)
T d1sxjc2 147 LSQCT---RFRFQPLPQ--EAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQS 203 (227)
T ss_dssp HTTSE---EEECCCCCH--HHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTT
T ss_pred HHHHh---hhccccccc--cccccccccccccccccCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 55664 456777532 45555555432 1478999999999999999999866654
No 49
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=27.29 E-value=98 Score=26.76 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCccchHHHHHh
Q 023202 32 SSPVRFSPPRSSRSHLLDQLAA 53 (286)
Q Consensus 32 ssp~rf~~p~~~~~~ll~~L~~ 53 (286)
++|+=-++|+-++.++++.|..
T Consensus 44 ~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEECCCCCCHHHHHHHHHH
Confidence 3566666666666666665543
No 50
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.50 E-value=62 Score=21.71 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=19.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILKR 204 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLKr 204 (286)
-+..++.++..|+++.+.|..++..|++
T Consensus 48 yI~~L~~~~~~l~~~~~~L~~~~~~L~~ 75 (79)
T d1nlwa_ 48 HIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777766665
No 51
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=26.14 E-value=26 Score=21.15 Aligned_cols=13 Identities=46% Similarity=0.787 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHh
Q 023202 134 GPEWVELFVREMM 146 (286)
Q Consensus 134 g~eWVEl~V~EM~ 146 (286)
..||||++|.---
T Consensus 4 dqewvelmveake 16 (31)
T d1b0nb_ 4 DQEWVELMVEAKE 16 (31)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3589999986433
No 52
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.53 E-value=21 Score=27.13 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=38.0
Q ss_pred ccccCCCCCCCCCCCCCCccchHHHHHhhC-----CCCCHHHHHHHHHHcCCCHHHHHHHHhhhhcC
Q 023202 26 RIRCSSSSPVRFSPPRSSRSHLLDQLAAIF-----PDMDNQILDRALEECGDDLDSAIRSLNELRLG 87 (286)
Q Consensus 26 R~Rcssssp~rf~~p~~~~~~ll~~L~~lF-----P~mD~q~le~aLe~cGndlDsAIksL~~L~L~ 87 (286)
|.||. -++|.||.. ..+...|..++ +--.+++++.+...|+.|+-.||..|-.+.+.
T Consensus 179 ~sR~~---~i~~~~~~~--~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~~~~ 240 (252)
T d1sxje2 179 KSQCL---LIRCPAPSD--SEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN 240 (252)
T ss_dssp HTTSE---EEECCCCCH--HHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHT
T ss_pred hcchh---eeeecccch--hhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Confidence 55773 467877633 44555555443 33346788999999988999999877665553
No 53
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.53 E-value=91 Score=26.68 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 023202 185 NKMLKEQVEALIQENM-----ILKRAVSIQHERQKEYEDRS---------QELHHLKQLVSQYQEQLRTL 240 (286)
Q Consensus 185 n~~lKeq~~~l~~eN~-----iLKrAv~IQheR~~e~e~~~---------~E~~~lkqlv~qyqeq~r~L 240 (286)
.+++++.+++...|.+ |++|-+.|--++...+|... -=+..||++.-+|-+++...
T Consensus 212 ~e~~~~~Le~a~~eqk~Lfl~i~q~Fv~iLse~l~~~e~~~~~~~~~W~~~~~grlk~~~~~y~~~~~~~ 281 (310)
T d1h2vc3 212 IERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQY 281 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHTHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888854 89999999888876665422 12345677777777665543
No 54
>d1zela1 a.4.5.83 (A:1-82) Hypothetical protein Rv2827c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.31 E-value=20 Score=25.65 Aligned_cols=16 Identities=56% Similarity=0.939 Sum_probs=14.1
Q ss_pred HcCCCHHHHHHHHhhh
Q 023202 69 ECGDDLDSAIRSLNEL 84 (286)
Q Consensus 69 ~cGndlDsAIksL~~L 84 (286)
-||.|-|+||+-|..+
T Consensus 43 gcgrdpdsairelrri 58 (82)
T d1zela1 43 GCGRDPDSAIRELRRI 58 (82)
T ss_dssp TCCCCHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHh
Confidence 4999999999998765
No 55
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.30 E-value=1.3e+02 Score=21.43 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023202 191 QVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLET 242 (286)
Q Consensus 191 q~~~l~~eN~iLKrAv~IQheR~~e~e~~~~E~~~lkqlv~qyqeq~r~LE~ 242 (286)
-++.+..+-.-|.+||.|=+.--..|.--..|+..=|+.|..++.+|...+.
T Consensus 50 ~l~siewdL~dLe~av~~ve~np~kf~l~~~ei~~Rr~fi~~~~~~I~~~~~ 101 (106)
T d1lvfa_ 50 NLRSIEWDLEDLDETISIVEANPRKFNLDATELSIRKAFITSTRQIVRDMKD 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSGGGGTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444677787765432233433457888889999999999999883
No 56
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.85 E-value=1.1e+02 Score=20.53 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=18.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 177 AAQSFHQENKMLKEQVEALIQENMILKRAV 206 (286)
Q Consensus 177 ~~~~~~kEn~~lKeq~~~l~~eN~iLKrAv 206 (286)
-+..+++++..|.++++.|.++|..|...+
T Consensus 48 yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l 77 (83)
T d1nkpb_ 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667766766666666665543
No 57
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.14 E-value=1.1e+02 Score=20.47 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023202 200 MILKRAVSIQHERQKEYEDRSQELHHLKQ 228 (286)
Q Consensus 200 ~iLKrAv~IQheR~~e~e~~~~E~~~lkq 228 (286)
.||..|+..=+.-+++.+...+|...|++
T Consensus 43 ~iL~~a~~yI~~L~~~~~~L~~e~~~lk~ 71 (80)
T d1am9a_ 43 AVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555554433333333333334433333
No 58
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.70 E-value=98 Score=20.16 Aligned_cols=11 Identities=9% Similarity=0.187 Sum_probs=5.6
Q ss_pred hHHHHHHHHHh
Q 023202 136 EWVELFVREMM 146 (286)
Q Consensus 136 eWVEl~V~EM~ 146 (286)
.|+.-.-..|.
T Consensus 12 ~Wl~e~~~~l~ 22 (101)
T d1u5pa2 12 SWIKEKKLLVS 22 (101)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 46665544443
No 59
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.67 E-value=51 Score=23.36 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=30.2
Q ss_pred chHHHHHh------hCCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 023202 46 HLLDQLAA------IFPDMDNQILDRALEECGDDLDSAIRSLNE 83 (286)
Q Consensus 46 ~ll~~L~~------lFP~mD~q~le~aLe~cGndlDsAIksL~~ 83 (286)
..|.+|+. +-+..|...|-+.|.++.-|++.|++.|.+
T Consensus 32 ~~L~elr~~l~~~~~~~~~DD~~llRfLrAr~fd~~~a~~ml~~ 75 (93)
T d1auaa1 32 KALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFEN 75 (93)
T ss_dssp HHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 34566655 334468899999999999999999999976
Done!