BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023203
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WJT|A Chain A, Solution Structure Of The N-Terminal Domain I Of Mouse
Transcription Elongation Factor S-Ii Protein 3
Length = 103
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 116 FDDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN 175
++E RI + E + ++E AL DLL+ L ++ + L+ T IG VN +RKH S+
Sbjct: 10 LEEELLRIAKKLEKMVSRKKTEGAL-DLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSD 68
Query: 176 -DVRKLVKHLVRKWKDIVD 193
+V L K L++ WK ++D
Sbjct: 69 KEVVSLAKVLIKNWKRLLD 87
>pdb|1PQV|S Chain S, Rna Polymerase Ii-Tfiis Complex
Length = 309
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 121 KRILEIKEHLEDPDQSEDALIDLLQSL-ADMDITFKALKETDIGRHVNQLRKHSSNDVRK 179
K +L ++LE ++ A++++L L + T K L+ET +G VN+ +K ++ ++ K
Sbjct: 4 KEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISK 63
Query: 180 LVKHLVRKWKDIVDE 194
LVK ++ WKD +++
Sbjct: 64 LVKKMISSWKDAINK 78
>pdb|1EO0|A Chain A, Conserved Domain Common To Transcription Factors Tfiis,
Elongin A, Crsp70
Length = 77
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 121 KRILEIKEHLEDPDQSEDALIDLLQSL-ADMDITFKALKETDIGRHVNQLRKHSSNDVRK 179
K +L ++LE ++ A++++L L + T K L+ET +G VN+ +K ++ ++ K
Sbjct: 4 KEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISK 63
Query: 180 LVKHLVRKWKDIVD 193
LVK ++ WKD ++
Sbjct: 64 LVKKMISSWKDAIN 77
>pdb|2GAC|B Chain B, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|D Chain D, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GL9|B Chain B, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
pdb|2GL9|D Chain D, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
Length = 144
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 163 GRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSPQQKIPQN 222
GR Q K + + K+V + KDI ++ LN+ GE + + DG + Q
Sbjct: 74 GRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQDGFNFAVH-DQK 132
Query: 223 GNH-QVPDFA 231
GN + P FA
Sbjct: 133 GNRLETPGFA 142
>pdb|1AYY|B Chain B, Glycosylasparaginase
pdb|1AYY|D Chain D, Glycosylasparaginase
pdb|2GAW|B Chain B, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|D Chain D, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
Length = 144
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 163 GRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSPQQKIPQN 222
GR Q K + + K+V + KDI ++ LN+ GE + + DG + Q
Sbjct: 74 GRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQDGFNFAVH-DQK 132
Query: 223 GNH-QVPDFA 231
GN + P FA
Sbjct: 133 GNRLETPGFA 142
>pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 163 GRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSPQQKIPQN 222
GR Q K + + K+V + KDI ++ LN+ GE + + DG + +
Sbjct: 225 GRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQDGFNFAVHDQKG 284
Query: 223 GNHQVPDFA 231
+ P FA
Sbjct: 285 NRLETPGFA 293
>pdb|3LJQ|A Chain A, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
pdb|3LJQ|C Chain C, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
Length = 299
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 163 GRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSPQQKIPQN 222
GR Q K + + K+V + KDI ++ LN+ GE + + DG + +
Sbjct: 229 GRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQDGFNFAVHDQKG 288
Query: 223 GNHQVPDFA 231
+ P FA
Sbjct: 289 NRLETPGFA 297
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 163 GRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSPQQKIPQN 222
GR Q K + + K+V + KDI ++ LN+ GE + + DG + +
Sbjct: 225 GRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQDGFNFAVHDQKG 284
Query: 223 GNHQVPDFA 231
+ P FA
Sbjct: 285 NRLETPGFA 293
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 163 GRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSPQQKIPQN 222
GR Q K + + K+V + KDI ++ LN+ GE + + DG + +
Sbjct: 225 GRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQDGFNFAVHDQKG 284
Query: 223 GNHQVPDFA 231
+ P FA
Sbjct: 285 NRLETPGFA 293
>pdb|1P4K|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4K|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4V|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
pdb|1P4V|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
Length = 295
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 163 GRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSPQQKIPQN 222
GR Q K + + K+V + KDI ++ LN+ GE + + DG + +
Sbjct: 225 GRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQDGFNFAVHDQKG 284
Query: 223 GNHQVPDFA 231
+ P FA
Sbjct: 285 NRLETPGFA 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,877,556
Number of Sequences: 62578
Number of extensions: 309310
Number of successful extensions: 704
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 14
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)