BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023203
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c
OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1
Length = 353
Score = 312 bits (800), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/286 (56%), Positives = 205/286 (71%), Gaps = 11/286 (3%)
Query: 1 MDLDDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCD 60
MDLDDFRS++ AGVDVWTFIDTAILVASLDY ELK RRD IVERLYAT +A++CRNCD
Sbjct: 1 MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD 60
Query: 61 FGNGVVDVNKEISRGQHDEVKAAQQASPSTPHSVNGDDDI-----DIENDNDIIDPYGGL 115
FG G I R + V + + ++++ ++E+D+D DP+ GL
Sbjct: 61 FGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDF-DPFAGL 119
Query: 116 FDDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN 175
FDDEQK I+EIKE LEDPD SE++L++LLQ+L DMDITF+AL+ETDIGRHVN++RKH SN
Sbjct: 120 FDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSN 179
Query: 176 DVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMM-DGDSPQQKIPQNGN-HQVPDFAYS 233
+VR+L K LV+KWK+ VDEWVK NQPG+L +++ D DSP QK NG+ QVPDF YS
Sbjct: 180 NVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYS 239
Query: 234 PNPHNGSSGSDKNN--SEPERKSKQ-APLPRKEALSSRPPQSASPA 276
P P NG S S KN+ +EPERK + AP PR+E+ S P SP+
Sbjct: 240 PVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPS 285
>sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b
OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1
Length = 436
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 21/212 (9%)
Query: 3 LDDFRSILKTAG-VDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCDF 61
LD +R + G D++ ID AI+VA+ D + K RRDKI E L+ +C +RC CD
Sbjct: 7 LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLF-SCRVNRCVGCDH 65
Query: 62 GNGVVDVNKEISRGQH----------DEVKAAQQASPSTPHSVNGDDDIDIENDNDIIDP 111
V + E +RG ++ + A + S +S GD++ + N D
Sbjct: 66 LELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIV--SNYTFDE 123
Query: 112 YGGLFDDEQ------KRILEIKE-HLEDPDQSEDALIDLLQSLADMDITFKALKETDIGR 164
L D+ + K + IKE L D+ L+D L+ L M + LK T+IG+
Sbjct: 124 AEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIGK 183
Query: 165 HVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWV 196
VN LRKHSS+ +R+L K L+ +WK++VD+WV
Sbjct: 184 AVNGLRKHSSDKIRQLAKTLIAEWKELVDQWV 215
>sp|F4J4Y5|MD26A_ARATH Probable mediator of RNA polymerase II transcription subunit 26a
OS=Arabidopsis thaliana GN=MED26A PE=2 SV=1
Length = 580
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 23/208 (11%)
Query: 1 MDLDDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCD 60
+ LD +R + D++ ID AI+VA+ D+ E K R D+I E L+ +C SRC CD
Sbjct: 8 VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF-SCKVSRCIGCD 66
Query: 61 FGNGVVDVNKEISRGQHDEVKAAQQASPSTPHSVNGDDDIDIENDNDIIDPYGGLFDDEQ 120
+ E+S + +G + E + +D
Sbjct: 67 --------HLELSIAGDEAAVEIVGVGGGGDRGDSGVATGEGEEASVSVD---------- 108
Query: 121 KRILEIKEHLEDPDQSEDA-LIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRK 179
++ I++ L + D +D+ L++ L+ L M ++ LK+T+IG+ VN LR+HSS+ + K
Sbjct: 109 -EVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISK 167
Query: 180 LVKHLVRKWKDIVDEWVKLNQPGELASS 207
L K L +WK +VD+W +N P E+A +
Sbjct: 168 LAKTLFAEWKRLVDQW--MNTPEEMAGT 193
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 24/172 (13%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN- 175
++E RI + E + ++E AL DLL+ L ++ + L+ T IG VN +RKH SN
Sbjct: 4 EEELLRIAKKLEKMVARKKTEGAL-DLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNK 62
Query: 176 DVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSPQQKIPQNGNHQVPDFA-YSP 234
+V L K L+R WK ++D S A G+ ++++ + D + + P
Sbjct: 63 EVVALAKVLIRNWKQLLD------------SPATPKGEKGEERVKAKKKEKGLDCSDWKP 110
Query: 235 NPHNGSSGSDKNNSEPERKSKQAPLPRKEALSSRPPQSASPAAPHSVQVSSS 286
+ + S P +K + P R++++ S+ ++SP P + +SS
Sbjct: 111 ---------ETSLSPPRKKRVEEPKDRRDSVDSKSSATSSPKRPSMERSNSS 153
>sp|A5PKE4|TEAN2_BOVIN Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Bos taurus GN=TCEANC2
PE=2 SV=1
Length = 208
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 12/103 (11%)
Query: 110 DPYGGLFD----DEQKRILEI------KEHLEDPDQSEDALIDLLQSLADMDITFKALKE 159
DP G ++ + KR++ I K LE PDQS++ L++ L+ L + + LK
Sbjct: 19 DPGGKIYKQATIESLKRVVVIEDIKRWKTMLELPDQSKENLVEALRELKKKIPSREVLKS 78
Query: 160 TDIGRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQPG 202
T IG VN++R+HS ++V L + + +W+ +++ V N+P
Sbjct: 79 TKIGHTVNKMRQHSDSEVACLAREVYTEWRTFIEKHV--NRPS 119
>sp|Q96MN5|TEAN2_HUMAN Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Homo sapiens GN=TCEANC2
PE=1 SV=1
Length = 208
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 127 KEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVR 186
K LE PDQ+++ L++ LQ L + + LK T IG VN++RKHS ++V L + +
Sbjct: 46 KTMLELPDQTKENLVEALQELKKKIPSREVLKSTRIGHTVNKMRKHSDSEVASLAREVYT 105
Query: 187 KWKDIVDE 194
+WK ++
Sbjct: 106 EWKTFTEK 113
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 135 QSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
+S + +DLL+ L M IT L+ T +G VN LRK SS+ +V L K L++ WK ++D
Sbjct: 22 KSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLD 81
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 135 QSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
+S + +DLL+ L M +T L+ T +G VN LRK SS+ +V L K L++ WK ++D
Sbjct: 22 KSAEGAMDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLLD 81
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 116 FDDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN 175
+DE RI + + + + AL DLL+ L ++ +T + L+ T IG VN LRK S++
Sbjct: 1 MEDEVVRIAKKMDKMVQKKNAAGAL-DLLKELKNIPMTLELLQSTRIGMSVNALRKQSTD 59
Query: 176 -DVRKLVKHLVRKWKDIVD 193
+V L K L++ WK ++D
Sbjct: 60 EEVTSLAKSLIKSWKKLLD 78
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN- 175
++E RI + + +E A+ DLL+ L +M IT L+ T +G VN LRK SS+
Sbjct: 4 EEEIARIARRLDKMVTRKNAEGAM-DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDE 62
Query: 176 DVRKLVKHLVRKWKDIVD 193
++ L K L++ WK ++D
Sbjct: 63 ELIALAKSLIKSWKKLLD 80
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN- 175
++E RI + + +E A+ DLL+ L +M IT L+ T +G VN LRK SS+
Sbjct: 4 EEEIARIARRLDKMVTRKNAEGAM-DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDE 62
Query: 176 DVRKLVKHLVRKWKDIVD 193
++ L K L++ WK ++D
Sbjct: 63 ELIALAKSLIKSWKKLLD 80
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 116 FDDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN 175
++E RI + E + ++E AL DLL+ L ++ + L+ T IG VN +RKH S+
Sbjct: 3 LEEELLRIAKKLEKMVSRKKTEGAL-DLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSD 61
Query: 176 -DVRKLVKHLVRKWKDIVD 193
+V L K L++ WK ++D
Sbjct: 62 KEVVSLAKVLIKNWKRLLD 80
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 116 FDDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN 175
+DE RI + + + + AL DLL+ L ++ +T + L+ T IG VN +RK S++
Sbjct: 1 MEDEVVRIAKKMDKMVQKKNAAGAL-DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTD 59
Query: 176 -DVRKLVKHLVRKWKDIVD 193
+V L K L++ WK ++D
Sbjct: 60 EEVTSLAKSLIKSWKKLLD 78
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
++E RI + + +D +DLL++L ++I L +T IG VN+LRK S +D
Sbjct: 4 EEEVFRIQKKMSKMASDGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSSKDD 63
Query: 177 -VRKLVKHLVRKWKDIV 192
V L K L++ WK +
Sbjct: 64 EVIALAKTLIKNWKRFL 80
>sp|Q90YY5|MED26_XENLA Mediator of RNA polymerase II transcription subunit 26 OS=Xenopus
laevis GN=med26 PE=2 SV=1
Length = 597
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 139 ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
A+++++ SL IT +AL+ET +G+ +N +RK +SN D+ K K L+R W+ +++
Sbjct: 30 AVLEVISSLEKYPITKEALEETRLGKLINDVRKKTSNEDLAKRAKKLLRNWQKLIE 85
>sp|Q8R2M0|TEAN2_MOUSE Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Mus musculus GN=Tceanc2
PE=2 SV=2
Length = 207
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 127 KEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVR 186
K LE PDQ+++ L+ LQ L + + L+ T IG VN++R+HS +V L K +
Sbjct: 45 KTMLELPDQTKENLVAALQELKKKMPSREVLRSTRIGHAVNKMRRHSDPEVAGLAKEVYT 104
Query: 187 KWKDIVDE 194
+WK +++
Sbjct: 105 EWKTFIEK 112
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 123 ILEIKEHLEDPDQSEDAL--IDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRK 179
++ I + ++ Q ++A +DLL+ L ++ +T + L+ T IG VN +RK S++ +V
Sbjct: 5 VIRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTS 64
Query: 180 LVKHLVRKWKDIVD 193
L K L++ WK ++D
Sbjct: 65 LAKSLIKSWKKLLD 78
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 141 IDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
+DLL+ L ++ +T + L+ T IG VN +RK S++ +V L K L++ WK ++D
Sbjct: 25 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLD 78
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 119 EQKRILEIKEHLED--PDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN- 175
+++ +L I + LE ++ + +DLL+ L ++ + L+ T IG VN +RKH S+
Sbjct: 3 QEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDK 62
Query: 176 DVRKLVKHLVRKWKDIVD 193
+V L K L++ WK ++D
Sbjct: 63 EVVSLAKVLIKNWKRLLD 80
>sp|Q9VCP0|ELOA1_DROME Transcription elongation factor B polypeptide 3 OS=Drosophila
melanogaster GN=EloA PE=1 SV=1
Length = 643
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 126 IKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLV 185
I++H ED E L+ + L ++ I F+ L+ET IG+ VN LRK S +V K LV
Sbjct: 18 IEKHGED----EQRLLHCITKLFNLPIKFEHLQETGIGKTVNALRK-ISGEVGVAAKTLV 72
Query: 186 RKWKDIV 192
KWK +V
Sbjct: 73 TKWKAMV 79
>sp|Q7TN02|MED26_MOUSE Mediator of RNA polymerase II transcription subunit 26 OS=Mus
musculus GN=Med26 PE=2 SV=1
Length = 588
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 139 ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
A+++++ SL IT +AL+ET +G+ +N +RK + N ++ K K L+R W+ +++
Sbjct: 30 AVLEVISSLERYPITKEALEETRLGKLINDVRKKTKNEELAKRAKRLLRSWQKLIE 85
>sp|O95402|MED26_HUMAN Mediator of RNA polymerase II transcription subunit 26 OS=Homo
sapiens GN=MED26 PE=1 SV=2
Length = 600
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 139 ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
A+++++ SL IT +AL+ET +G+ +N +RK + N ++ K K L+R W+ +++
Sbjct: 30 AVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIE 85
>sp|Q5XIC7|TEAN2_RAT Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Rattus norvegicus
GN=Tceanc2 PE=2 SV=1
Length = 207
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 130 LEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWK 189
LE P+Q+++ L+ LQ L + + L+ T IG VN++R+HS +V L K + +WK
Sbjct: 48 LELPEQTKENLVAALQELKKKIPSREVLRSTRIGHAVNKVRRHSDPEVAGLAKEVYTEWK 107
Query: 190 DIVD 193
++
Sbjct: 108 TFIE 111
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 121 KRILEIKEHLEDPDQSEDALIDLLQSL-ADMDITFKALKETDIGRHVNQLRKHSSNDVRK 179
K +L ++LE ++ A++++L L + T K L+ET +G VN+ +K ++ ++ K
Sbjct: 4 KEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISK 63
Query: 180 LVKHLVRKWKDIVDE 194
LVK ++ WKD +++
Sbjct: 64 LVKKMISSWKDAINK 78
>sp|Q90YL3|MED26_DANRE Mediator of RNA polymerase II transcription subunit 26 OS=Danio
rerio GN=med26 PE=2 SV=2
Length = 589
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 139 ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
A++D++ +L IT +AL+ET +G+ +N +RK + + D+ K K L+R W+ +++
Sbjct: 30 AVLDVITNLEKYPITKEALEETRLGKLINDVRKKTKDEDLAKRAKKLLRNWQKLIE 85
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 123 ILEIKEHLEDP--DQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKL 180
I++ +E LE D D ++ L++ + IT LK TDIG+ V +LR H +
Sbjct: 4 IIKCREQLEKAIKDGEFDKALECLKNAKNFKITKDLLKSTDIGKSVGKLRAHKDIGISSQ 63
Query: 181 VKHLVRKWK 189
K L+ KWK
Sbjct: 64 SKELIDKWK 72
>sp|A5PK23|MED26_BOVIN Mediator of RNA polymerase II transcription subunit 26 OS=Bos
taurus GN=MED26 PE=2 SV=1
Length = 599
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 139 ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
A+ +++ SL IT +AL+ET +G+ +N +RK + N ++ K K L+R W+ +++
Sbjct: 30 AVQEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIE 85
>sp|B0UYI1|TEAN2_DANRE Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Danio rerio GN=tceanc2
PE=3 SV=1
Length = 210
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 130 LEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKW 188
LE P Q ++ +I+ L+ L + + LK T IG VN LRKHS + +++ L K + + W
Sbjct: 48 LELPGQPKENMIEALKELDKKVPSREVLKSTRIGHTVNNLRKHSDDPEIKSLAKEVYKHW 107
Query: 189 KDIVDE 194
+ ++E
Sbjct: 108 RTFIEE 113
>sp|Q9V4F9|MED26_DROME Mediator of RNA polymerase II transcription subunit 26
OS=Drosophila melanogaster GN=MED26 PE=1 SV=2
Length = 1483
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 11/99 (11%)
Query: 120 QKRILEIKEHLEDP-DQSED-----ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHS 173
Q I E+ HL DQ+ D A++ ++ +L IT + L+ T + +++NQLR+ +
Sbjct: 3 QIEIQELTTHLSQALDQNYDVVNMDAVLCVICALEGTTITKEQLEATRLAKYINQLRRRT 62
Query: 174 SND-VRKLVKHLVRKWKDIV----DEWVKLNQPGELASS 207
N+ + + K L++KW+++V L P +++SS
Sbjct: 63 KNEHLARRAKSLLKKWREMVGIQQTATENLAHPSQISSS 101
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 35/140 (25%)
Query: 143 LLQSLADMDITFKALKETDIGRHVNQLRKHSSND-VRKLVKHLVRKWKDIVDEWVKLNQP 201
LL L+ + ++ + +++T+IG VN +RK ++D V K K++++ WK++VD
Sbjct: 31 LLDQLSKIPMSIEIIQKTNIGIKVNMMRKKVTDDAVAKRAKNIIKDWKNVVDG------- 83
Query: 202 GELASSAMMDGDSPQQKIPQNGNHQVPDFAYSPNPHNGSSGSDKNNSEPERKSKQAPLPR 261
S + DG +P K H S + ++PE+K +AP R
Sbjct: 84 ---KSKSQDDGGAPPAK-----------------KHRKESVEE---AKPEKKKIEAPYKR 120
Query: 262 KEALSSRP---PQSASPAAP 278
E SSRP Q AS + P
Sbjct: 121 PEP-SSRPEIVAQFASASFP 139
>sp|Q29CV2|MED26_DROPS Mediator of RNA polymerase II transcription subunit 26
OS=Drosophila pseudoobscura pseudoobscura GN=MED26 PE=3
SV=2
Length = 1602
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 120 QKRILEIKEHLEDP-DQSED-----ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHS 173
Q +I ++ HL DQ+ D A++ ++ +L IT + L+ T + +++NQLR+ +
Sbjct: 3 QNQIQQLTSHLSQALDQNYDVVNMDAVLSVICALEGTTITKEQLEATRLAKYINQLRRRT 62
Query: 174 SND-VRKLVKHLVRKWKDIV 192
N+ + + K L++ W+++V
Sbjct: 63 KNEHLARRAKSLLKMWREMV 82
>sp|Q9C8K1|BGL36_ARATH Putative myrosinase 6 OS=Arabidopsis thaliana GN=TGG6 PE=5 SV=2
Length = 484
Score = 38.1 bits (87), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 161 DIGRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSP 215
D R + +L K + +D + + L +++ D V W+ LNQP LA DG P
Sbjct: 146 DFRRRIWRLLKPTYSDFKNYAELLFQRFGDRVKFWITLNQPYSLAVKGYGDGQYP 200
>sp|Q63187|ELOA1_RAT Transcription elongation factor B polypeptide 3 OS=Rattus
norvegicus GN=Tceb3 PE=1 SV=1
Length = 773
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 152 ITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLN-----QPGELAS 206
IT L ET +G+ VN RKH V + LV +WK +V V+ N Q E ++
Sbjct: 38 ITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLVP--VERNNEAEDQDFEKSN 93
Query: 207 SAMMDGDSPQQKIPQNGNHQ 226
S D PQQ+ GN+Q
Sbjct: 94 SRKRPRDVPQQEEEAEGNYQ 113
>sp|Q14241|ELOA1_HUMAN Transcription elongation factor B polypeptide 3 OS=Homo sapiens
GN=TCEB3 PE=1 SV=2
Length = 798
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 152 ITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWKDIV 192
IT L ET +G+ VN LRKH V + LV +WK +V
Sbjct: 64 ITVDILAETGVGKTVNSLRKH--EHVGSFARDLVAQWKKLV 102
>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus
GN=Pkd1l3 PE=2 SV=2
Length = 2201
Score = 33.9 bits (76), Expect = 1.6, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 205 ASSAMMDG--DSPQQKIPQNGNHQVPDFAYSPNPHNGSSGSDKNNSEPERKSK----QAP 258
ASS+ G D+P P G P S +P G+S + +NS P+ S+ +P
Sbjct: 352 ASSSPPQGTLDTPSSSSPPQGTSDTPA---SSSPPQGTSETPASNSPPQGTSETPGFSSP 408
Query: 259 LPRKEA--LSSRPPQ--SASPAAPHSVQVSS 285
A +SS PPQ S +PA+ QV+S
Sbjct: 409 PQVTTATLVSSSPPQVTSETPASSSPTQVTS 439
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 123 ILEIKEHLEDPDQSE--DALIDLLQSLADMDI-TFKALKETDIGRHVNQLRKHSSNDVRK 179
I K LE Q + + +I+++ L + + T + LKET +G V +LR H + V +
Sbjct: 6 IRSAKAALEKAIQGKNIETIINIMTRLKNEVVATEELLKETRLGLVVGKLRSHPNEKVGE 65
Query: 180 LVKHLVRKWK 189
+ +V+KWK
Sbjct: 66 QAREIVKKWK 75
>sp|O35964|SH3G1_RAT Endophilin-A2 OS=Rattus norvegicus GN=Sh3gl1 PE=1 SV=1
Length = 368
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 4 DDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCDF-- 61
DDFR + K VD+ + +LV +++Y R K+ + I + +N +
Sbjct: 31 DDFREMEKK--VDITSKAVAEVLVRTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQ 88
Query: 62 -----GNGVVDVNKEISRGQHDEVKAAQQASPSTPHSVNGDDDIDIENDNDIIDPYGGLF 116
G +V KE+ G+ + A A S D +DIE + IDP L
Sbjct: 89 SEGLLGECMVRHGKELG-GESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLC 147
Query: 117 DDEQKRILEIKEHLE 131
D + K EI+ HL+
Sbjct: 148 DKDLK---EIQHHLK 159
>sp|Q8CB77|ELOA1_MOUSE Transcription elongation factor B polypeptide 3 OS=Mus musculus
GN=Tceb3 PE=1 SV=3
Length = 773
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 152 ITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWKDIV 192
IT L ET +G+ VN RKH V + LV +WK +V
Sbjct: 38 ITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLV 76
>sp|Q62419|SH3G1_MOUSE Endophilin-A2 OS=Mus musculus GN=Sh3gl1 PE=1 SV=1
Length = 368
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 4 DDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCDF-- 61
DDF+ + K VDV + +LV +++Y R K+ + I + +N +
Sbjct: 31 DDFKDMEKK--VDVTSKAVAEVLVRTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQ 88
Query: 62 -----GNGVVDVNKEISRGQHDEVKAAQQASPSTPHSVNGDDDIDIENDNDIIDPYGGLF 116
G +V KE+ G+ + A A S D +DIE + IDP L
Sbjct: 89 SEGLLGECMVRHGKELG-GESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLC 147
Query: 117 DDEQKRILEIKEHLE 131
D + K EI+ HL+
Sbjct: 148 DKDLK---EIQHHLK 159
>sp|Q9I352|HEMTB_PSEAE Bacteriohemerythrin OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=PA1673 PE=3 SV=1
Length = 153
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 115 LFDDEQKRILEIKEHLEDPDQSED--ALIDLLQSLADMDITFKALKET 160
+ D++ KRI+E+ HL D Q ++ A+ ++++ L D ++ A +ET
Sbjct: 16 VIDNQHKRIVEMINHLHDAQQGKEHAAIAEVIEELVDYTLSHFAFEET 63
>sp|Q02KG3|HEMTB_PSEAB Bacteriohemerythrin OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=PA14_42860 PE=3 SV=1
Length = 153
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 115 LFDDEQKRILEIKEHLEDPDQSED--ALIDLLQSLADMDITFKALKET 160
+ D++ KRI+E+ HL D Q ++ A+ ++++ L D ++ A +ET
Sbjct: 16 VIDNQHKRIVEMINHLHDAQQGKEHAAIAEVIEELVDYTLSHFAFEET 63
>sp|B7UV48|HEMTB_PSEA8 Bacteriohemerythrin OS=Pseudomonas aeruginosa (strain LESB58)
GN=PLES_36541 PE=3 SV=1
Length = 153
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 115 LFDDEQKRILEIKEHLEDPDQSED--ALIDLLQSLADMDITFKALKET 160
+ D++ KRI+E+ HL D Q ++ A+ ++++ L D ++ A +ET
Sbjct: 16 VIDNQHKRIVEMINHLHDAQQGKEHAAIAEVIEELVDYTLSHFAFEET 63
>sp|Q2KJA1|SH3G1_BOVIN Endophilin-A2 OS=Bos taurus GN=SH3GL1 PE=2 SV=1
Length = 368
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 4 DDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCDF-- 61
DDF+ + K VDV + T +L +++Y R K+ + I + +N +
Sbjct: 31 DDFKEMEKK--VDVTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQ 88
Query: 62 -----GNGVVDVNKEISRGQHDEVKAAQQASPSTPHSVNGDDDIDIENDNDIIDPYGGLF 116
G ++ KE+ G+ + A A S D +DIE + IDP L
Sbjct: 89 SEGLLGECMIRHGKELG-GESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLC 147
Query: 117 DDEQKRILEIKEHLE 131
D + K EI+ HL+
Sbjct: 148 DKDLK---EIQHHLK 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,069,883
Number of Sequences: 539616
Number of extensions: 5313747
Number of successful extensions: 18267
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 18083
Number of HSP's gapped (non-prelim): 298
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)