Query 023203
Match_columns 286
No_of_seqs 157 out of 433
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:06:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wjt_A Transcription elongatio 99.8 6.2E-20 2.1E-24 148.2 3.0 78 120-197 11-91 (103)
2 1pqv_S STP-alpha, transcriptio 99.7 1.8E-16 6.1E-21 148.2 9.0 79 120-198 3-82 (309)
3 2xpp_A IWS1, ECU08_0440; trans 98.0 5.1E-06 1.7E-10 70.6 4.6 69 124-192 64-138 (145)
4 3nfq_A Transcription factor IW 97.8 1.4E-05 4.8E-10 69.6 4.0 56 136-191 95-152 (170)
5 2b4j_C PC4 and SFRS1 interacti 95.5 0.032 1.1E-06 44.6 6.7 69 125-193 14-84 (98)
6 1z9e_A PC4 and SFRS1 interacti 94.6 0.044 1.5E-06 45.7 5.3 68 126-193 15-84 (127)
7 1nwd_B GAD, glutamate decarbox 31.8 27 0.00093 21.6 2.0 15 182-196 12-26 (28)
8 1x5b_A Signal transducing adap 31.2 67 0.0023 26.7 5.1 22 172-193 107-128 (163)
9 1ich_A TNF-1, tumor necrosis f 28.8 18 0.0006 29.3 1.0 40 3-50 25-64 (112)
10 2i7u_A Four-alpha-helix bundle 23.8 52 0.0018 23.6 2.6 24 176-199 3-26 (62)
11 3zyq_A Hepatocyte growth facto 23.1 63 0.0022 28.1 3.6 65 122-193 46-121 (226)
12 1juq_A ADP-ribosylation factor 22.8 65 0.0022 27.1 3.5 21 173-193 111-131 (171)
No 1
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=99.77 E-value=6.2e-20 Score=148.22 Aligned_cols=78 Identities=32% Similarity=0.565 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCC--CCCHHHHHHHHHHhhcCCCcHHHhhccCccccchhhhcC-CCHHHHHHHHHHHHHHHHHHHHhh
Q 023203 120 QKRILEIKEHLEDP--DQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKH-SSNDVRKLVKHLVRKWKDIVDEWV 196 (286)
Q Consensus 120 ~~EV~rIKk~Ld~~--~~sed~llelLr~L~~l~iT~dlLksT~IGkaVN~LRKH-~s~~I~~LAk~LV~kWK~~V~e~~ 196 (286)
++||++|++.|++. ..+.+.++++|++|+.++||+++|++|+||++||+|||| ++++|+.+|+.||++||++|..+.
T Consensus 11 e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~v~~~~ 90 (103)
T 1wjt_A 11 EEELLRIAKKLEKMVSRKKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPR 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999998874 345678999999999999999999999999999999999 789999999999999999999865
Q ss_pred h
Q 023203 197 K 197 (286)
Q Consensus 197 ~ 197 (286)
+
T Consensus 91 ~ 91 (103)
T 1wjt_A 91 T 91 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 2
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=99.65 E-value=1.8e-16 Score=148.17 Aligned_cols=79 Identities=29% Similarity=0.529 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHh-hcCCCcHHHhhccCccccchhhhcCCCHHHHHHHHHHHHHHHHHHHHhhhc
Q 023203 120 QKRILEIKEHLEDPDQSEDALIDLLQSL-ADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKL 198 (286)
Q Consensus 120 ~~EV~rIKk~Ld~~~~sed~llelLr~L-~~l~iT~dlLksT~IGkaVN~LRKH~s~~I~~LAk~LV~kWK~~V~e~~~~ 198 (286)
++||++|++.|++...+.+.++++|++| +.++||+++|++|+||++||+||||.+++|+.+|+.||++||++|..+...
T Consensus 3 ~~el~~~~~~L~k~~~~~~~~l~~L~~L~~~~~it~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK~~v~~~~~~ 82 (309)
T 1pqv_S 3 SKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKDAINKNKRS 82 (309)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4689999999999667889999999999 999999999999999999999999999999999999999999999998654
No 3
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=97.98 E-value=5.1e-06 Score=70.64 Aligned_cols=69 Identities=32% Similarity=0.380 Sum_probs=55.9
Q ss_pred HHHHHHhCCC-C---CCHHHHHHHHHHhhcCCCcHHHhhccCccccchhhhcCCC--HHHHHHHHHHHHHHHHHH
Q 023203 124 LEIKEHLEDP-D---QSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSS--NDVRKLVKHLVRKWKDIV 192 (286)
Q Consensus 124 ~rIKk~Ld~~-~---~sed~llelLr~L~~l~iT~dlLksT~IGkaVN~LRKH~s--~~I~~LAk~LV~kWK~~V 192 (286)
..|+.-|+-. + .+..---.+|+.|..|||+.+.|+.++|||+|.-|.||+. ++++++|+.||.+|...+
T Consensus 64 ~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi 138 (145)
T 2xpp_A 64 DEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEV 138 (145)
T ss_dssp HHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHHHH
Confidence 3444455531 2 2455557788889999999999999999999999999976 799999999999998765
No 4
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=97.78 E-value=1.4e-05 Score=69.63 Aligned_cols=56 Identities=25% Similarity=0.421 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHhhcCCCcHHHhhccCccccchhhhcCCC--HHHHHHHHHHHHHHHHH
Q 023203 136 SEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSS--NDVRKLVKHLVRKWKDI 191 (286)
Q Consensus 136 sed~llelLr~L~~l~iT~dlLksT~IGkaVN~LRKH~s--~~I~~LAk~LV~kWK~~ 191 (286)
+..---.+|+.|..|||+.+.|+.++|||+|.-|.||+. ++++.+|..||.+|..-
T Consensus 95 ~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsRp 152 (170)
T 3nfq_A 95 SFEIQKSLFAALNDLPVKTEHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRP 152 (170)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHCCCCHHHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHHH
Confidence 344456778888899999999999999999999999976 78999999999999543
No 5
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=95.52 E-value=0.032 Score=44.64 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=55.0
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhcCCCcHHHhh-ccCccccchhhhcC-CCHHHHHHHHHHHHHHHHHHH
Q 023203 125 EIKEHLEDPDQSEDALIDLLQSLADMDITFKALK-ETDIGRHVNQLRKH-SSNDVRKLVKHLVRKWKDIVD 193 (286)
Q Consensus 125 rIKk~Ld~~~~sed~llelLr~L~~l~iT~dlLk-sT~IGkaVN~LRKH-~s~~I~~LAk~LV~kWK~~V~ 193 (286)
.|+..|--...+...++++|..|..|++|.-+|+ .+.+=-++.+||+. .+..|++.|..|+.+.|.++.
T Consensus 14 ~ik~~L~~~~~Dv~kcl~~L~~l~~l~~T~~mL~rnpe~V~t~kklRry~g~q~Ir~kA~~iY~kfK~~f~ 84 (98)
T 2b4j_C 14 EIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFL 84 (98)
T ss_dssp HHHHHTCTTSCCHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHccCCCCHHHHHHHHHHHhcccccHHHHhhChHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHh
Confidence 3444444334578999999999999999999665 55688899999886 569999999999999999885
No 6
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=94.61 E-value=0.044 Score=45.74 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=55.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhcCCCcHHHhh-ccCccccchhhhcC-CCHHHHHHHHHHHHHHHHHHH
Q 023203 126 IKEHLEDPDQSEDALIDLLQSLADMDITFKALK-ETDIGRHVNQLRKH-SSNDVRKLVKHLVRKWKDIVD 193 (286)
Q Consensus 126 IKk~Ld~~~~sed~llelLr~L~~l~iT~dlLk-sT~IGkaVN~LRKH-~s~~I~~LAk~LV~kWK~~V~ 193 (286)
|+..|--...+...++++|..|..|++|.-+|+ .+.|=-++.+||+. .|..|++.|..|+.+.|.++.
T Consensus 15 Ik~~L~v~~~Dv~kCl~~Leel~~l~vT~~mL~Rnpe~V~TlkklRrY~gnq~Ir~kA~~iY~kFK~lf~ 84 (127)
T 1z9e_A 15 IKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFL 84 (127)
T ss_dssp HHHHTCGGGCCHHHHHHHHHHHHHSCCCHHHHGGGHHHHHHHHHHTTCTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHccccccHHHHhhChHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 333343223578899999999999999999666 55688899999886 568999999999999999996
No 7
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=31.82 E-value=27 Score=21.58 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhh
Q 023203 182 KHLVRKWKDIVDEWV 196 (286)
Q Consensus 182 k~LV~kWK~~V~e~~ 196 (286)
-.+|..||+.|++..
T Consensus 12 lemitawkkfveekk 26 (28)
T 1nwd_B 12 LEMITAWKKFVEEKK 26 (28)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhh
Confidence 578999999998764
No 8
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=31.19 E-value=67 Score=26.72 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 023203 172 HSSNDVRKLVKHLVRKWKDIVD 193 (286)
Q Consensus 172 H~s~~I~~LAk~LV~kWK~~V~ 193 (286)
..+..|+..+..||..|...+.
T Consensus 107 ~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 107 KAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999998764
No 9
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=28.79 E-value=18 Score=29.29 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=31.9
Q ss_pred hhHHHHHHHhcCCchHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhh
Q 023203 3 LDDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYAT 50 (286)
Q Consensus 3 ld~wR~ff~~~g~dI~~~ID~AI~VAA~D~p~elR~RRD~IvErL~~a 50 (286)
.++|+.|.|..| +=|+-|..+-.|||..+| +...|+|..=
T Consensus 25 ~~~WK~~aRkLG-----Lse~~Id~Ie~~~~r~l~---Eq~yqmLr~W 64 (112)
T 1ich_A 25 PLRWKEFVKRLG-----LSDHEIDRLELQNGRCLR---EAQYSMLATW 64 (112)
T ss_dssp STTHHHHHHHHT-----CCHHHHHHHHHHCCSCHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHcC-----CCHHHHHHHHHHCcCChH---HHHHHHHHHH
Confidence 468999999999 778899988888876554 6677777653
No 10
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=23.81 E-value=52 Score=23.59 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Q 023203 176 DVRKLVKHLVRKWKDIVDEWVKLN 199 (286)
Q Consensus 176 ~I~~LAk~LV~kWK~~V~e~~~~~ 199 (286)
+++.-|..|+..||++.++..+.-
T Consensus 3 klreeaaklfeewkklaeeaakll 26 (62)
T 2i7u_A 3 KLREEAAKLFEEWKKLAEEAAKLL 26 (62)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999998876653
No 11
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.08 E-value=63 Score=28.10 Aligned_cols=65 Identities=15% Similarity=0.336 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhcC-----------CCcHHHhhccCccccchhhhcCCCHHHHHHHHHHHHHHHH
Q 023203 122 RILEIKEHLEDPDQSEDALIDLLQSLADM-----------DITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWKD 190 (286)
Q Consensus 122 EV~rIKk~Ld~~~~sed~llelLr~L~~l-----------~iT~dlLksT~IGkaVN~LRKH~s~~I~~LAk~LV~kWK~ 190 (286)
-+..|+++|.. .+....+-+|.-|..+ -.+.+.|.. +-+. +.+..+..|+..+..||..|..
T Consensus 46 a~ral~krl~~--~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~--l~~l---~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVND--KNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEE--LKDL---LKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHH--HHHH---HHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHH--HHHH---hccCCCHHHHHHHHHHHHHHHH
Confidence 35567778874 3444444444433321 233444322 2122 2345678999999999999998
Q ss_pred HHH
Q 023203 191 IVD 193 (286)
Q Consensus 191 ~V~ 193 (286)
.+.
T Consensus 119 ~f~ 121 (226)
T 3zyq_A 119 AFR 121 (226)
T ss_dssp HTT
T ss_pred HhC
Confidence 764
No 12
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=22.81 E-value=65 Score=27.07 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 023203 173 SSNDVRKLVKHLVRKWKDIVD 193 (286)
Q Consensus 173 ~s~~I~~LAk~LV~kWK~~V~ 193 (286)
.+..|+..+..||..|...+.
T Consensus 111 ~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 111 VSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp SCHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHHHcC
Confidence 458999999999999998764
Done!