BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023204
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 291 bits (744), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 175/265 (66%), Gaps = 12/265 (4%)
Query: 24 FYKDFDITWGDGRAKMLNNGDLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGT 83
F +++ TW K N G+ + L LDK +G+GFQSK YL+G MQ+KLVPG+SAGT
Sbjct: 17 FGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGT 76
Query: 84 VTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAADFHTY 143
VTA+YL S S DEIDFEFLGN +G PY L TNVFT GKGDREQ+ +LWFDP +FH Y
Sbjct: 77 VTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYY 136
Query: 144 SILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDW 203
S+LWN IVF VD PIR FKN + +GV FP NQPM+IYSSLWNADDWATRGGL KTDW
Sbjct: 137 SVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDW 196
Query: 204 THAPFTASYRNFNAEACVWXXXXXXXXXXXXXXXXXXXXWFS----QELDSTNQSRLKWV 259
+ APF ASYR+F+ + C W+ Q+LD+ RL WV
Sbjct: 197 SKAPFIASYRSFHIDGC-------EASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWV 249
Query: 260 QKNYMIYNYCADTKRFPQGLPAECR 284
++ Y IYNYC D R+P +P EC+
Sbjct: 250 RQKYTIYNYCTDRSRYP-SMPPECK 273
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 126/242 (52%), Gaps = 18/242 (7%)
Query: 46 LTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKS----PGSTWDEIDF 101
LT+ LD SGSGF+S N Y G +KL G +AG +T++YL + PG DEID
Sbjct: 63 LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKH-DEIDI 121
Query: 102 EFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPI 161
EFLG + G PYTL TNVF G GDRE + HLWFDP D+H Y+I W P I+F VD PI
Sbjct: 122 EFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPI 181
Query: 162 REFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNAEACV 221
R + P +P+ +Y S+W+A WAT G K D+ + PF Y +F +C
Sbjct: 182 RRYPRKSDATFPL---RPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCT 238
Query: 222 WXXXXXXXXXXXXXXXXXXXXWFSQELDSTNQSRLKWVQKNYMIYNYCADTKRFPQGLPA 281
+L + ++WVQKNYM+YNYC D R L
Sbjct: 239 VEAASSCNPASVSPYG---------QLSQQQVAAMEWVQKNYMVYNYCDDPTR-DHTLTP 288
Query: 282 EC 283
EC
Sbjct: 289 EC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 126/242 (52%), Gaps = 18/242 (7%)
Query: 46 LTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKS----PGSTWDEIDF 101
LT+ LD SGSGF+S N Y G +KL G +AG +T++YL + PG DEID
Sbjct: 40 LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKH-DEIDI 98
Query: 102 EFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPI 161
EFLG + G PYTL TNVF G GDRE + HLWFDP D+H Y+I W P I+F VD PI
Sbjct: 99 EFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPI 158
Query: 162 REFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNAEACV 221
R + P +P+ +Y S+W+A WAT G K D+ + PF Y +F +C
Sbjct: 159 RRYPRKSDATFPL---RPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCT 215
Query: 222 WXXXXXXXXXXXXXXXXXXXXWFSQELDSTNQSRLKWVQKNYMIYNYCADTKRFPQGLPA 281
+L + ++WVQKNYM+YNYC D R L
Sbjct: 216 VEAASSCNPASVSPYG---------QLSQQQVAAMEWVQKNYMVYNYCDDPTR-DHTLTP 265
Query: 282 EC 283
EC
Sbjct: 266 EC 267
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 126/247 (51%), Gaps = 23/247 (9%)
Query: 46 LTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKS----PGSTWDEIDF 101
LT+ LD SGSGF+S N Y G +KL G +AG +T++YL + PG DEID
Sbjct: 39 LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKH-DEIDI 97
Query: 102 EFLGNLSGDPYTLHTNVFTNGKGD-----REQQFHLWFDPAADFHTYSILWNPQRIVFSV 156
EFLG + G PYTL TNVF G GD RE + HLWFDP D+H Y+I W P I+F V
Sbjct: 98 EFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFDPTQDYHNYAIYWTPSEIIFFV 157
Query: 157 DGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFN 216
D PIR + P +PM +Y S+W+A WAT G K D+ + PF Y +F
Sbjct: 158 DDVPIRRYPRKSDATFPL---RPMWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFK 214
Query: 217 AEACVWXXXXXXXXXXXXXXXXXXXXWFSQELDSTNQSRLKWVQKNYMIYNYCADTKRFP 276
+C +L + ++WVQKNYM+YNYC D R
Sbjct: 215 LGSCTVEAASSCNPASVSPYG---------QLSQQQVAAMEWVQKNYMVYNYCDDPTR-D 264
Query: 277 QGLPAEC 283
L EC
Sbjct: 265 HTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 126/247 (51%), Gaps = 23/247 (9%)
Query: 46 LTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKS----PGSTWDEIDF 101
LT+ LD SGSGF+S N Y G +KL G +AG +T++YL + PG DEID
Sbjct: 42 LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKH-DEIDI 100
Query: 102 EFLGNLSGDPYTLHTNVFTNGKGD-----REQQFHLWFDPAADFHTYSILWNPQRIVFSV 156
EFLG + G PYTL TNVF G GD RE + HLWFDP D+H Y+I W P I+F V
Sbjct: 101 EFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFDPTQDYHNYAIYWTPSEIIFFV 160
Query: 157 DGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFN 216
D PIR + P +P+ +Y S+W+A WAT G K D+ + PF Y +F
Sbjct: 161 DDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFK 217
Query: 217 AEACVWXXXXXXXXXXXXXXXXXXXXWFSQELDSTNQSRLKWVQKNYMIYNYCADTKRFP 276
+C +L + ++WVQKNYM+YNYC D R
Sbjct: 218 LGSCTVEAASSCNPASVSPYG---------QLSQQQVAAMEWVQKNYMVYNYCDDPTR-D 267
Query: 277 QGLPAEC 283
L EC
Sbjct: 268 HTLTPEC 274
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 29/190 (15%)
Query: 20 SAGNFYKDFD-------ITWGDGRAKMLNNGD----LLTLSLDKASGSGFQSKNEYLYGK 68
+ G+FY+ F+ W M + G+ L + S +K G G QS Y YG
Sbjct: 2 TGGSFYEPFNNYNTGLWQKWAFDHVSMTSLGEMRLSLTSPSYNKFDGGGNQSVQTYGYGL 61
Query: 69 IDMQLKLVPGNSAGTVTAYYLKS---PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGD 125
++ +K P + G V+A+Y + G+ WDEID EFLG D + N +TNG G+
Sbjct: 62 YEVNMK--PAKNVGIVSAFYTSTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGVGN 116
Query: 126 REQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSS 185
E+ +L FD A +HTY+ W P I + VDG + K++ + +P P +IY S
Sbjct: 117 HEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQIP---QTPGKIYMS 169
Query: 186 LW---NADDW 192
LW D+W
Sbjct: 170 LWAGAGVDEW 179
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 22/175 (12%)
Query: 28 FDITWGDGRAKMLNNGDL---LTLS-LDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGT 83
F+ TW N+G L LT S +K + ++S N Y YG ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 84 VTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAADF 140
V++++ + G+ WDEID EFLG D + N +TNG G E+ L FD + F
Sbjct: 88 VSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 141 HTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA---DDW 192
HTY+ W P I + VDG K++ + +P + P +I +LWN DDW
Sbjct: 145 HTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 22/175 (12%)
Query: 28 FDITWGDGRAKMLNNGDL---LTLS-LDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGT 83
F+ TW N+G L LT S +K + ++S N Y YG ++ +K P + G
Sbjct: 28 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 85
Query: 84 VTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAADF 140
V++++ + G+ WDEID EFLG D + N +TNG G E+ L FD + F
Sbjct: 86 VSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGF 142
Query: 141 HTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA---DDW 192
HTY+ W P I + VDG K++ + +P + P +I +LWN DDW
Sbjct: 143 HTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 190
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 24/176 (13%)
Query: 28 FDITWGDGRAKMLNNGDLLTLSLDKASGSGF-----QSKNEYLYGKIDMQLKLVPGNSAG 82
F+ TW M + G++ LSL S + F +S Y YG ++ +K P + G
Sbjct: 30 FNCTWRANNVSMTSLGEM-RLSLTSPSYNKFDCGENRSVQTYGYGLYEVNMK--PAKNVG 86
Query: 83 TVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAAD 139
V++++ + G+ WDEID EFLG D + N +TNG G+ E+ +L FD A
Sbjct: 87 IVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGVGNHEKIVNLGFDAANS 143
Query: 140 FHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA---DDW 192
+HTY+ W P I + VDG + K++ + +P P +I +LWN D+W
Sbjct: 144 YHTYAFDWQPNSIKWYVDG----QLKHTATTQIP---QTPGKIMMNLWNGAGVDEW 192
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 22/175 (12%)
Query: 28 FDITWGDGRAKMLNNGDL---LTLS-LDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGT 83
F+ TW N+G L LT S +K + ++S N Y YG ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 84 VTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAADF 140
V++++ + G+ WD+ID +FLG D + N +TNG G E+ L FD + F
Sbjct: 88 VSSFFTYTGPAHGTQWDQIDIQFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 141 HTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA---DDW 192
HTY+ W P I + VDG K++ + +P + P +I +LWN DDW
Sbjct: 145 HTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 18/141 (12%)
Query: 58 FQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTL 114
++S N Y YG ++ +K P + G V++++ + G+ WDEID EFLG D +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 115 HTNVFTNGKGDREQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPF 174
N +TNG G E+ L FD + FHTY+ W P I + VDG K++ + +P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 175 PKNQPMRIYSSLWNA---DDW 192
+ P +I +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 18/141 (12%)
Query: 58 FQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTL 114
++S N Y YG ++ +K P + G V++++ + G+ WDEID EFLG D +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 115 HTNVFTNGKGDREQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPF 174
N +TNG G E+ L FD + FHTY+ W P I + VDG K++ + +P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 175 PKNQPMRIYSSLWNA---DDW 192
+ P +I +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 18/141 (12%)
Query: 58 FQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTL 114
++S N Y YG ++ +K P + G V++++ + G+ WDEID EFLG D +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 115 HTNVFTNGKGDREQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPF 174
N +TNG G E+ L FD + FHTY+ W P I + VDG K++ + +P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 175 PKNQPMRIYSSLWNA---DDW 192
+ P +I +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 24/176 (13%)
Query: 28 FDITWGDGRAKMLNNGDLLTLSLDKASGSGF-----QSKNEYLYGKIDMQLKLVPGNSAG 82
F+ TW M + G++ L+L + + F +S Y YG ++++K P + G
Sbjct: 54 FNCTWRANNVSMTSLGEM-RLALTSPAYNKFDCGENRSVQTYGYGLYEVRMK--PAKNTG 110
Query: 83 TVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAAD 139
V++++ + G+ WDEID EFLG D + N +TNG G+ E+ L FD A
Sbjct: 111 IVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGAGNHEKIVDLGFDAANA 167
Query: 140 FHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA---DDW 192
+HTY+ W P I + VDG + K++ + +P P +I +LWN D+W
Sbjct: 168 YHTYAFDWQPNSIKWYVDG----QLKHTATNQIP---TTPGKIMMNLWNGTGVDEW 216
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 19/175 (10%)
Query: 24 FYKDFDITWGDGRAKMLNNGDLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGT 83
++ ++I DG + D+ + S A G+ +++++++ YG Q+++ P + G
Sbjct: 51 IWRAYNIELKDGILNLSITDDMPSSSKPYA-GAEYRTRDKFGYGL--YQVRMKPAKNPGI 107
Query: 84 VTAYYLKS---PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAADF 140
V++++ + G+ WDEID EFLG D + N +TN G+ E + L FD + DF
Sbjct: 108 VSSFFTYTGPVHGTPWDEIDIEFLGK---DTTKVQFNYYTNSAGNHEYIYDLRFDASEDF 164
Query: 141 HTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLW---NADDW 192
H Y+ W P I + VDG + ++ + I V P +I ++W D+W
Sbjct: 165 HIYAFNWQPNYIAWLVDGEEV--YRAYDDIPV-----HPGKIMLNIWPGIGVDEW 212
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 93 GSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAADFHTYSILWNPQRI 152
G+ WDEID EFLG D + N +TNG G E+ L FD + FHTY+ W P I
Sbjct: 17 GTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYI 73
Query: 153 VFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA---DDW 192
+ VDG K++ + +P + P +I +LWN DDW
Sbjct: 74 KWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 109
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 48 LSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDF 101
+S+ SG+ + EY YGK + ++K+ ++GTV++ +L GS W E+D
Sbjct: 2 VSMKDFSGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDI 59
Query: 102 EFLGNLSGDPYTLHTNVFTNGKG-DREQQFHLWFDPAAD--FHTYSILWNPQRIVFSVDG 158
E LG P + +N+ T G + + H PAAD FHTY + W P + ++VDG
Sbjct: 60 EVLGK---SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 159 TPIREFKNSE 168
+R+ + +
Sbjct: 117 QEVRKTEGGQ 126
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Query: 54 SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 107
SG+ + E YGK + ++K+ ++GTV++ +L GS W E+D E LG
Sbjct: 5 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 108 SGDPYTLHTNVFTNGKG-DREQQFHLWFDPAAD--FHTYSILWNPQRIVFSVDGTPIREF 164
+P + +N+ T G + + H PAAD FHTY + W P + ++VDG +R+
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 119
Query: 165 KNSE 168
+ +
Sbjct: 120 EGGQ 123
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Query: 54 SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 107
SG+ + E YGK + ++K+ ++GTV++ +L GS W E+D E LG
Sbjct: 6 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 62
Query: 108 SGDPYTLHTNVFTNGKGDREQQF-HLWFDPAAD--FHTYSILWNPQRIVFSVDGTPIREF 164
+P + +N+ T G ++ H PAAD FHTY + W P + ++VDG +R+
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 120
Query: 165 KNSE 168
+ +
Sbjct: 121 EGGQ 124
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 54 SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 107
SG+ + E YGK + ++K+ ++GTV++ L GS W E+D E LG
Sbjct: 6 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGK- 62
Query: 108 SGDPYTLHTNVFTNGKG-DREQQFHLWFDPAAD--FHTYSILWNPQRIVFSVDGTPIREF 164
+P + +N+ T G + + H PAAD FHTY + W P + ++VDG +R+
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 120
Query: 165 KNSE 168
+ +
Sbjct: 121 EGGQ 124
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 48 LSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDF 101
+S SG+ + E YGK + + K ++GTV++ +L GS W E+D
Sbjct: 2 VSAKDFSGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDI 59
Query: 102 EFLGNLSGDPYTLHTNVFTNGKG-DREQQFHLWFDPAAD--FHTYSILWNPQRIVFSVDG 158
E LG +P + +N+ T G + + H PAAD FHTY + W P + ++VDG
Sbjct: 60 EVLGK---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 159 TPIREFKNSE 168
+R+ + +
Sbjct: 117 QEVRKTEGGQ 126
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 54 SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 107
SG+ + E YGK + + K ++GTV++ +L GS W E+D E LG
Sbjct: 5 SGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 108 SGDPYTLHTNVFTNGKG-DREQQFHLWFDPAAD--FHTYSILWNPQRIVFSVDGTPIREF 164
+P + +N+ T G + + H PAAD FHTY + W P + ++VDG +R+
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 119
Query: 165 KNSE 168
+ +
Sbjct: 120 EGGQ 123
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 34 DGRAK--MLNNGDLLTLSLDKASGS------GFQSKNEYLYGKIDMQLKLVPGNSAGTVT 85
D RA + NG+L+ + +A G Q+K + YG+++ +++ G G
Sbjct: 47 DSRANSALDGNGNLVITARQEADGGYTSARLTTQNKVQPQYGRVEASIQIPRGQ--GIWP 104
Query: 86 AYYLKS---PGSTW-DEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDP----- 136
A+++ P + W D + + + N+ +P+ +H ++ G E + P
Sbjct: 105 AFWMLGADFPNTPWPDSGEIDIMENIGREPHLVHGSLHGPGYFGGEPLTGSYMHPQGWSF 164
Query: 137 AADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDW 192
A FHT+++ W P I +SVDG + + ++++ G P+ +QP + ++ DW
Sbjct: 165 ADTFHTFAVDWRPGSITWSVDGVAYQTYTSADTRGNPWVFDQPFFMILNVAVGGDW 220
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 28 FDITWGDGRAKMLNNGDL---LTLS-LDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGT 83
F+ TW N+G L LT S +K + ++S N Y YG ++ +K P + G
Sbjct: 118 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 175
Query: 84 VTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNG 122
V++++ + G+ WDEID EFLG D + N +TNG
Sbjct: 176 VSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNG 214
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 124 GDREQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIY 183
G E+ L FD + FHTY+ W P I + VDG K++ + +P + P +I
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIM 54
Query: 184 SSLWNA---DDW 192
+LWN DDW
Sbjct: 55 MNLWNGTGVDDW 66
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 59 QSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKS---PGSTWDEI-DFEFLGNLSGDPYTL 114
Q K + YG+I+ ++++ G G A+++ PG+ W + + + N+ +P+ +
Sbjct: 76 QGKYQPQYGRIEARIQIPRGQ--GIWPAFWMLGGSFPGTPWPSSGEIDIMENVGFEPHRV 133
Query: 115 HTNVFTNGKGDREQQFHLWFDP-----AADFHTYSILWNPQRIVFSVDG 158
H V G ++ P A FHT+++ W P I + VDG
Sbjct: 134 HGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITWFVDG 182
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 98 EIDF-EFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAA------DFHTYSILWNPQ 150
EID EFLG+ +P T+H V G + + P DFH + I+W P
Sbjct: 137 EIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPD 193
Query: 151 RIVFSVDGTPIREF--KNSESIGVPFPKNQPMRIYSSL 186
+I + VDGT E + E++G + ++P I +L
Sbjct: 194 KIKWYVDGTFYHEVTKEQVEAMGYEWVFDKPFYIILNL 231
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 13/84 (15%)
Query: 96 WDEIDFEFLGNLSG---DPYTLHTNVFTNGK----------GDREQQFHLWFDPAADFHT 142
+ EID L S + LH V NGK +HL FDP DFHT
Sbjct: 135 YSEIDVVELTQKSAVRESDHDLHNIVVKNGKPTWXRPGSFPQTNHNGYHLPFDPRNDFHT 194
Query: 143 YSILWNPQRIVFSVDGTPIREFKN 166
Y + +I + VDG + E N
Sbjct: 195 YGVNVTKDKITWYVDGEIVGEKDN 218
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 29/190 (15%)
Query: 36 RAKMLN---NGDLLTLSLDKASGSGFQ---------SKNEYLYGKIDMQLKLVPGNSAGT 83
RA++ N G +L + + S G + K + YG+ +++ +L G GT
Sbjct: 43 RARIENARVGGGVLIIEARRESYEGREYTSARLVTRGKASWTYGRFEIRARLPSGR--GT 100
Query: 84 VTAYYL----KSPGSTW----DEIDF-EFLG-NLSGDPYTLHTNVFTNGKGDREQQFHLW 133
A ++ ++ GS + EID E +G N T+HT + + G +
Sbjct: 101 WPAIWMLPDRQTYGSAYWPDNGEIDIAEHVGFNPDVVHGTVHTKAYNHLLGTQRGGSIRV 160
Query: 134 FDPAADFHTYSILWNPQRIVFSVDGT-----PIREFKNSESIGVPFPKNQPMRIYSSLWN 188
DFH Y+I W P+ I + VD + P N E+ +P +QP + ++
Sbjct: 161 PTARTDFHVYAIEWTPEEIRWFVDDSLYYRFPNERLTNPEADWRHWPFDQPFHLIMNIAV 220
Query: 189 ADDWATRGGL 198
W + G+
Sbjct: 221 GGTWGGQQGV 230
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 59 QSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGS----TWDEIDF-EFLGNLSGDPYT 113
+ K E YGKI+++ KL G + G T EID E LG+ + Y
Sbjct: 89 EGKFEIKYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTVYG 148
Query: 114 LHTNVFTNGKGDREQQFHL---WFDPAADFHTYSILWNPQRIVFSVDG 158
+G +HL D + DFH +SI W+ + + VDG
Sbjct: 149 TAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDG 196
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 59 QSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGS----TWDEIDF-EFLGNLSGDPYT 113
+ K E YGKI+++ KL G + G T EID E LG+ + Y
Sbjct: 97 EGKFEIKYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTVYG 156
Query: 114 LHTNVFTNGKGDREQQFHL---WFDPAADFHTYSILWNPQRIVFSVDG 158
+G +HL D + DFH +SI W+ + + VDG
Sbjct: 157 TAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDG 204
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 57 GFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHT 116
GF ++ E L ++ ++ P +TA+Y + G DE + E+L ++ D
Sbjct: 144 GFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYL-KIAQDLEMYGV 202
Query: 117 NVFT--NGKG 124
N FT N KG
Sbjct: 203 NYFTIRNKKG 212
>pdb|2KSN|A Chain A, Solution Structure Of The N-Terminal Domain Of Dc-UbpUBTD2
Length = 137
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 165 KNSESIGVPFPKNQPMRIYSSLWNADDWATRGGL-VKTD--WTHAP 207
+NSE GV +NQP++ W +D T G L K D W AP
Sbjct: 5 ENSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAP 50
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 192 WATRGGLVKTDWTHAPFTASYRNFNAEACVW 222
+ T GG + WT AP SYR F + + VW
Sbjct: 205 YTTSGGKIPIRWT-APEAISYRKFTSASDVW 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,036,055
Number of Sequences: 62578
Number of extensions: 385715
Number of successful extensions: 776
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 38
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)