Query 023204
Match_columns 286
No_of_seqs 285 out of 1769
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 3.1E-83 6.8E-88 586.2 34.6 260 21-286 24-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 2.1E-81 4.5E-86 570.4 33.2 256 21-283 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 3E-43 6.6E-48 310.3 25.3 175 31-219 13-201 (203)
4 cd02175 GH16_lichenase lichena 100.0 7.2E-38 1.6E-42 277.5 25.1 173 29-218 26-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 8.1E-35 1.8E-39 251.1 19.2 174 26-216 3-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 6.1E-33 1.3E-37 243.7 24.0 171 30-218 25-210 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 5.4E-33 1.2E-37 253.3 22.1 177 34-218 57-257 (258)
8 cd08023 GH16_laminarinase_like 100.0 3.7E-32 8E-37 243.8 22.7 178 30-218 33-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 3E-30 6.5E-35 236.2 21.7 170 34-218 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 4.1E-30 8.9E-35 238.1 19.3 181 31-218 37-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 1.5E-29 3.3E-34 230.8 20.5 180 31-218 42-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 100.0 6.9E-28 1.5E-32 226.9 19.5 138 54-193 100-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 1.2E-27 2.7E-32 224.3 18.6 134 55-190 98-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 2.4E-24 5.3E-29 203.8 19.3 155 30-193 74-242 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 3.1E-20 6.6E-25 128.9 4.1 44 240-283 5-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.6 5.6E-15 1.2E-19 144.1 14.8 189 34-232 160-465 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.6 1E-14 2.2E-19 134.3 14.1 153 36-193 43-251 (293)
18 smart00560 LamGL LamG-like jel 94.8 1.8 3.8E-05 35.1 14.6 70 136-222 59-130 (133)
19 PF13385 Laminin_G_3: Concanav 93.8 1.8 3.9E-05 34.3 11.9 66 137-220 84-149 (157)
20 PF06439 DUF1080: Domain of Un 91.8 2.6 5.7E-05 35.5 10.8 102 53-167 41-156 (185)
21 smart00210 TSPN Thrombospondin 90.5 5 0.00011 34.5 11.3 88 68-165 55-144 (184)
22 smart00159 PTX Pentraxin / C-r 86.8 21 0.00045 31.3 17.5 73 137-220 89-163 (206)
23 cd00152 PTX Pentraxins are pla 85.4 24 0.00052 30.7 17.3 74 136-220 88-163 (201)
24 PF09264 Sial-lect-inser: Vibr 84.3 1.9 4E-05 37.8 4.8 101 51-165 14-121 (198)
25 PF10287 DUF2401: Putative TOS 83.8 5.6 0.00012 36.0 7.8 77 68-150 102-207 (235)
26 cd00110 LamG Laminin G domain; 80.8 27 0.00058 27.8 16.2 86 64-164 19-106 (151)
27 PF14099 Polysacc_lyase: Polys 70.0 46 0.001 29.0 9.6 51 135-189 149-204 (224)
28 KOG1834 Calsyntenin [Extracell 69.7 29 0.00062 36.2 8.9 52 137-193 441-492 (952)
29 PF09224 DUF1961: Domain of un 66.1 30 0.00065 31.0 7.4 60 138-217 159-218 (218)
30 smart00282 LamG Laminin G doma 63.0 35 0.00076 26.9 6.9 28 137-164 61-88 (135)
31 PF02210 Laminin_G_2: Laminin 62.9 66 0.0014 24.5 9.7 75 137-219 53-127 (128)
32 PF02973 Sialidase: Sialidase, 57.6 1.3E+02 0.0029 26.4 13.2 133 62-221 30-176 (190)
33 PF00354 Pentaxin: Pentaxin fa 46.1 2E+02 0.0043 25.0 9.6 70 137-217 83-154 (195)
34 PF11948 DUF3465: Protein of u 44.2 36 0.00077 28.2 3.9 24 34-57 34-57 (131)
35 cd06482 ACD_HspB10 Alpha cryst 37.7 50 0.0011 25.1 3.7 55 32-86 19-73 (87)
36 cd06526 metazoan_ACD Alpha-cry 36.8 78 0.0017 23.3 4.6 53 32-87 18-70 (83)
37 cd00070 GLECT Galectin/galacto 32.2 1.6E+02 0.0034 23.5 6.0 49 117-166 56-105 (127)
38 KOG4352 Fas-mediated apoptosis 30.8 89 0.0019 26.6 4.3 37 127-164 92-128 (187)
39 cd06470 ACD_IbpA-B_like Alpha- 27.8 96 0.0021 23.3 3.8 46 32-78 22-71 (90)
40 PF00337 Gal-bind_lectin: Gala 22.9 2.2E+02 0.0047 22.6 5.3 49 117-166 61-110 (133)
41 COG0071 IbpA Molecular chapero 22.7 2.2E+02 0.0048 23.3 5.4 47 32-78 61-111 (146)
42 PF07691 PA14: PA14 domain; I 22.4 1.2E+02 0.0026 24.0 3.7 29 136-165 57-85 (145)
43 PF06832 BiPBP_C: Penicillin-B 21.6 1.1E+02 0.0024 22.7 3.1 34 151-186 44-77 (89)
44 cd06464 ACD_sHsps-like Alpha-c 21.5 1.4E+02 0.0031 21.2 3.7 57 32-88 18-77 (88)
45 PF00054 Laminin_G_1: Laminin 20.7 3.4E+02 0.0074 21.4 6.0 29 137-165 52-80 (131)
46 KOG0674 Calreticulin [Posttran 20.6 7.7E+02 0.017 23.8 10.4 24 140-163 170-194 (406)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=3.1e-83 Score=586.19 Aligned_cols=260 Identities=56% Similarity=1.061 Sum_probs=240.5
Q ss_pred cccccccceeeeeCCCeEEecCCCEEEEEEcCCCcceEEEcccEEeEEEEEEEEecCCCCCccEEEEEEecCCCCCCeEE
Q 023204 21 AGNFYKDFDITWGDGRAKMLNNGDLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEID 100 (286)
Q Consensus 21 ~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~~p~~~EID 100 (286)
...|.++|.++|+.+|+.+.++|+.|+|+||+.+|++|+||+.|+||+||||||+|+|+++|+||||||++.++.++|||
T Consensus 24 ~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~~~~dEID 103 (291)
T PLN03161 24 EADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTGSRHDEID 103 (291)
T ss_pred cccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCCCCCCeEE
Confidence 56899999999999999998888889999999999999999999999999999999988899999999999777899999
Q ss_pred EEEcCCCCCCCeEEEeeeecCCCCCcceeeecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeccCCCCCCCCCCCCc
Q 023204 101 FEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPM 180 (286)
Q Consensus 101 ~E~lG~~~g~~~~~qtnv~~~g~~~~~~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm 180 (286)
|||||+++++++++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..+.+||+++||
T Consensus 104 iEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~pM 183 (291)
T PLN03161 104 FEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQGM 183 (291)
T ss_pred EEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999887778899998999
Q ss_pred EEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEeeeecCCC--CCCCCCCCCCCCCCCCcccc----cCCCHHHHH
Q 023204 181 RIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNAEACVWSNG--KSSCASNSASSTSSNGAWFS----QELDSTNQS 254 (286)
Q Consensus 181 ~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~~c~~~~~--~~~c~~~~~~~~~~~~~~~~----~~l~~~~~~ 254 (286)
+|++|||+|++|||+||++||||+++||+|.|++|++++|.++++ ...|...+ ...||+ ++|+++|++
T Consensus 184 ~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~------~~~~~~~~~~~~l~~~~~~ 257 (291)
T PLN03161 184 RVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPT------PSNWWTSPSYSQLTNAQLT 257 (291)
T ss_pred EEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCC------ccccccCccccCCCHHHHH
Confidence 999999999999999999999999999999999999999987643 23686421 235765 489999999
Q ss_pred HHHHHhhcCeEEecccCCCCCCCCCCCCCCCC
Q 023204 255 RLKWVQKNYMIYNYCADTKRFPQGLPAECRTS 286 (286)
Q Consensus 255 ~~~~~~~~~~~y~yc~d~~r~~~~~~~ec~~~ 286 (286)
+|+|||+||||||||+|++|||+++||||.++
T Consensus 258 ~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 258 QMKKVRDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred HHHHHHhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 99999999999999999999998789999764
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=2.1e-81 Score=570.37 Aligned_cols=256 Identities=56% Similarity=1.111 Sum_probs=238.6
Q ss_pred cccccccceeeeeCCCeEEecCCCEEEEEEcCCCcceEEEcccEEeEEEEEEEEecCCCCCccEEEEEEecCC-CCCCeE
Q 023204 21 AGNFYKDFDITWGDGRAKMLNNGDLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPG-STWDEI 99 (286)
Q Consensus 21 ~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~~-p~~~EI 99 (286)
+..|.++|.++|+++|+++.++|+.|+|+||+.+|++|.||+.|+||+||||||+|+|+++|+||||||++++ |.++||
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~EI 82 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDEI 82 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCeE
Confidence 4579999999999999999988999999999999999999999999999999999998778999999999986 889999
Q ss_pred EEEEcCCCCCCCeEEEeeeecCCCCCcceeeecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeccCCCCCCCCCCCC
Q 023204 100 DFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQP 179 (286)
Q Consensus 100 D~E~lG~~~g~~~~~qtnv~~~g~~~~~~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~P 179 (286)
|||+||+.+|+++++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..+.+||+++|
T Consensus 83 D~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 162 (263)
T cd02176 83 DFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQP 162 (263)
T ss_pred EEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccce
Confidence 99999999999999999999999989999999999999999999999999999999999999999998777889999899
Q ss_pred cEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEeeeecCCCCCCCCCCCCCCCCCCCcccc----cCCCHHHHHH
Q 023204 180 MRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNAEACVWSNGKSSCASNSASSTSSNGAWFS----QELDSTNQSR 255 (286)
Q Consensus 180 m~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~~c~~~~~~~~c~~~~~~~~~~~~~~~~----~~l~~~~~~~ 255 (286)
|+|++|||+||+|||+||++|+||+++||+|.|++|+|++|.+++....|..+. ...||+ ++|+++|+++
T Consensus 163 m~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ 236 (263)
T cd02176 163 MGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSC------TEDWWNGSTYQQLSANQQRA 236 (263)
T ss_pred EEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCC------ccccccccccccCCHHHHHH
Confidence 999999999999999999999999999999999999999999776555665421 134665 4899999999
Q ss_pred HHHHhhcCeEEecccCCCCCCCCCCCCC
Q 023204 256 LKWVQKNYMIYNYCADTKRFPQGLPAEC 283 (286)
Q Consensus 256 ~~~~~~~~~~y~yc~d~~r~~~~~~~ec 283 (286)
|+|||+||||||||.|++|||. +||||
T Consensus 237 ~~~~~~~~~~y~yC~d~~r~~~-~p~ec 263 (263)
T cd02176 237 MEWVRRNYMVYDYCDDRKRYPV-PPPEC 263 (263)
T ss_pred HHHHHHCCEEEecCCCCCcCCC-CcCCC
Confidence 9999999999999999999996 89999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=3e-43 Score=310.32 Aligned_cols=175 Identities=33% Similarity=0.635 Sum_probs=152.2
Q ss_pred eeeCCCeEEecCCCEEEEEEcCC-CcceEEEcccEEeEEEEEEEEecCCCCCccEEEEEEecCCCCCCeEEEEEcCCCCC
Q 023204 31 TWGDGRAKMLNNGDLLTLSLDKA-SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSG 109 (286)
Q Consensus 31 ~w~~~nv~~~~~G~~l~L~ld~~-sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~~p~~~EID~E~lG~~~g 109 (286)
+...+++.+.. ..|.|+|++. +|++|.|++.|+||+||||||+|.+ +|+||||||+++ .++|||||++|+
T Consensus 13 ~~~~~~~~~~~--~~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G~--- 83 (203)
T cd02183 13 TVTSGTVDYDD--DGASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVGG--- 83 (203)
T ss_pred EecCCcEeECC--CeEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecCC---
Confidence 44578888763 3499999887 7999999999999999999999998 799999999987 579999999996
Q ss_pred CCeEEEeeeecCCCC---CcceeeecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeccCC-CCCCCCCCCCcEEEEe
Q 023204 110 DPYTLHTNVFTNGKG---DREQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNSES-IGVPFPKNQPMRIYSS 185 (286)
Q Consensus 110 ~~~~~qtnv~~~g~~---~~~~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~-~g~~~P~~~Pm~l~ln 185 (286)
++..+|+|++.++.. ++.+.+.++++++++||+|+|+|+|++|+|||||++++++++.+. .+..||. +||+|++|
T Consensus 84 ~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~-~P~~l~ln 162 (203)
T cd02183 84 DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQ-TPMRLQIG 162 (203)
T ss_pred CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCC-CCcEEEEE
Confidence 567899999977654 345667788898899999999999999999999999999987542 3567996 99999999
Q ss_pred eeeCCC---------ccCCCCccccCCCCCCeEEEEeEEEEee
Q 023204 186 LWNADD---------WATRGGLVKTDWTHAPFTASYRNFNAEA 219 (286)
Q Consensus 186 lw~gg~---------Wat~GG~~~~d~~~~Pf~~~~~~~~v~~ 219 (286)
+|+||+ || ||+ +||+.+||.|.|++|+|..
T Consensus 163 ~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~~ 201 (203)
T cd02183 163 IWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVTD 201 (203)
T ss_pred EecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEEe
Confidence 999985 99 786 8999999999999999854
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=7.2e-38 Score=277.51 Aligned_cols=173 Identities=32% Similarity=0.642 Sum_probs=146.5
Q ss_pred eeeeeCCCeEEecCCCEEEEEEcCC-------CcceEEEcccEEeEEEEEEEEecCCCCCccEEEEEEecC---CCCCCe
Q 023204 29 DITWGDGRAKMLNNGDLLTLSLDKA-------SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP---GSTWDE 98 (286)
Q Consensus 29 ~~~w~~~nv~~~~~G~~l~L~ld~~-------sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~---~p~~~E 98 (286)
..+|.++|+.+. +| .|+|++.+. ++++|.|+.+|+||+||||||+|.+ +|+|+||||++. +..++|
T Consensus 26 ~~~~~~~nv~v~-~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~E 101 (212)
T cd02175 26 NCTWSADNVEFS-DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDE 101 (212)
T ss_pred eeeEccccEEEE-CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCE
Confidence 357889999997 45 488888543 4789999999999999999999987 799999999974 245799
Q ss_pred EEEEEcCCCCCCCeEEEeeeecCCCCCcceeeecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeccCCCCCCCCCCC
Q 023204 99 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQ 178 (286)
Q Consensus 99 ID~E~lG~~~g~~~~~qtnv~~~g~~~~~~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~ 178 (286)
||||++|++ +..+|+|+|.++.+.....+.+++++.++||+|+|+|+|++|+|||||+++++++..+ ..+|. +
T Consensus 102 IDiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~-~ 174 (212)
T cd02175 102 IDIEFLGKD---TTKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPD-T 174 (212)
T ss_pred EEEEEccCC---CCEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCC-C
Confidence 999999974 4568889888877666666778889899999999999999999999999999998643 35786 9
Q ss_pred CcEEEEeeeeCC---CccCCCCccccCCCCCCeEEEEeEEEEe
Q 023204 179 PMRIYSSLWNAD---DWATRGGLVKTDWTHAPFTASYRNFNAE 218 (286)
Q Consensus 179 Pm~l~lnlw~gg---~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 218 (286)
||+|++|+|.|+ +|+ |. +|. .+|+.|+|++||+.
T Consensus 175 p~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 175 PGKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CcEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 999999999985 598 54 566 89999999999984
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=8.1e-35 Score=251.08 Aligned_cols=174 Identities=37% Similarity=0.681 Sum_probs=148.8
Q ss_pred ccceeeeeCCCeEEecCCCEEEEEEcC-----CCcceEEEcccEEeEEEEEEEEecCCCCCccEEEEEEecC--CCCCCe
Q 023204 26 KDFDITWGDGRAKMLNNGDLLTLSLDK-----ASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP--GSTWDE 98 (286)
Q Consensus 26 ~~f~~~w~~~nv~~~~~G~~l~L~ld~-----~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~--~p~~~E 98 (286)
+.+.++|+++||.+.+ |..|.|++++ .++++|.|++.++||+||+|||++.+ +|+|+||||.+. ++.++|
T Consensus 3 ~~~~~~~~~~nv~~~~-g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~E 79 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVED-GGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGGE 79 (185)
T ss_dssp CTEEEEETCCGEEEET-TSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTEE
T ss_pred CceEEeeCCCcEEEcC-CCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchhh
Confidence 5688999999999975 4569999977 57899999999999999999998877 799999999763 478999
Q ss_pred EEEEEcCCCCCCCeEEEeeeecCCCCCc--ceeeecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeccCCCCCCCCC
Q 023204 99 IDFEFLGNLSGDPYTLHTNVFTNGKGDR--EQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPK 176 (286)
Q Consensus 99 ID~E~lG~~~g~~~~~qtnv~~~g~~~~--~~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~ 176 (286)
||||++|++. ..+++++|..+.+.. ..++.+.+++.++||+|+|+|+|++|+|||||++++++......+..+|.
T Consensus 80 IDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGNDP---TQVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTST---TEEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhccccc---cceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 9999999854 459999999888765 45667788999999999999999999999999999999987654446887
Q ss_pred CCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEE
Q 023204 177 NQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFN 216 (286)
Q Consensus 177 ~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~ 216 (286)
..||+|.+++|.+++|++..| .|++|+||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 789999999999999985555 46677765
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=6.1e-33 Score=243.67 Aligned_cols=171 Identities=37% Similarity=0.587 Sum_probs=142.0
Q ss_pred eeeeCCCeEEecCCCEEEEEEcCC------CcceEEE-cccEEeEEEEEEEEecCCCCCccEEEEEEecCC---CCCCeE
Q 023204 30 ITWGDGRAKMLNNGDLLTLSLDKA------SGSGFQS-KNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPG---STWDEI 99 (286)
Q Consensus 30 ~~w~~~nv~~~~~G~~l~L~ld~~------sGs~i~S-k~~~~YG~~eariKlp~g~s~G~~~AFwl~~~~---p~~~EI 99 (286)
..|.++|+.+.++|. |.|++.+. ++++|.| ++.|+||+||+|||++.+ .|+|+||||++.+ +..+||
T Consensus 25 ~~~~~~nv~~~~~G~-L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~EI 101 (210)
T cd00413 25 MTNSPNNVYVENDGG-LTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGEI 101 (210)
T ss_pred EEECccCEEEeCCCe-EEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCeE
Confidence 567899999976464 88888543 5789999 999999999999999987 7999999999975 679999
Q ss_pred EEEEcCCCCCCCeEEEeeeecCCCC-----CcceeeecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeccCCCCCCC
Q 023204 100 DFEFLGNLSGDPYTLHTNVFTNGKG-----DREQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPF 174 (286)
Q Consensus 100 D~E~lG~~~g~~~~~qtnv~~~g~~-----~~~~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~ 174 (286)
|||++|++ +..+++++|..+.+ .....+.+++++.++||+|+|+|+|+.|+|||||++++++.+. .
T Consensus 102 DiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------~ 172 (210)
T cd00413 102 DIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------V 172 (210)
T ss_pred EEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------C
Confidence 99999974 45688888876543 2233455666678999999999999999999999999998753 6
Q ss_pred CCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEe
Q 023204 175 PKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNAE 218 (286)
Q Consensus 175 P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 218 (286)
|. +||+|+||+|.+++|++. .+....|..|.|++|||.
T Consensus 173 p~-~p~~i~ln~~~~~~~~~~-----~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 173 PD-DPMNIILNLWSDGGWWWG-----GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred CC-CCcEEEEEEEECCCCccc-----CCCCCCCcEEEEEEEEEC
Confidence 76 999999999999998822 244688999999999973
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=5.4e-33 Score=253.33 Aligned_cols=177 Identities=23% Similarity=0.254 Sum_probs=134.9
Q ss_pred CCCeEEecCCCEEEEEEcCC-----------CcceEEEcccEEeEEEEEEEEecCCCCCccEEEEEEecC-CCCCCeEE-
Q 023204 34 DGRAKMLNNGDLLTLSLDKA-----------SGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP-GSTWDEID- 100 (286)
Q Consensus 34 ~~nv~~~~~G~~l~L~ld~~-----------sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~-~p~~~EID- 100 (286)
++|+.+. +|. |.|++.+. ++++|.||+.++||+||||||+|.+ +.+|||||++. ++.++|||
T Consensus 57 ~~nv~v~-~G~-L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~---~~~pAfW~~~~~~~~~gEIDI 131 (258)
T cd02178 57 ADNVSVE-DGN-LVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL---PMSSAFWLLSDTKDSTTEIDI 131 (258)
T ss_pred cCCeEEE-CCE-EEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC---CccceEEEccCCCCCCCcEEh
Confidence 5677775 564 88888543 3578999999999999999999976 35899999996 46899999
Q ss_pred EEEcCCCC--CCCeEEEeeeecCCCC-----Cc---ceeeecCCCCCCCcEEEEEEEc-CCeEEEEECCeeEEEEeccCC
Q 023204 101 FEFLGNLS--GDPYTLHTNVFTNGKG-----DR---EQQFHLWFDPAADFHTYSILWN-PQRIVFSVDGTPIREFKNSES 169 (286)
Q Consensus 101 ~E~lG~~~--g~~~~~qtnv~~~g~~-----~~---~~~~~l~fdp~~dfHtY~i~Wt-p~~I~fyVDg~~vr~~~~~~~ 169 (286)
||++|... ..+..+|+++|..+.+ .+ ...+...++++++||+|+|+|+ |++|+|||||++++++++.+.
T Consensus 132 ~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~~ 211 (258)
T cd02178 132 LEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSEI 211 (258)
T ss_pred hhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCccc
Confidence 89999763 2245788887643221 11 1234455667899999999999 999999999999999987543
Q ss_pred CCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEe
Q 023204 170 IGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNAE 218 (286)
Q Consensus 170 ~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 218 (286)
...+|+++||+|+||+++|| |+...+.. ..-...|..|.||+|||.
T Consensus 212 -~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 212 -TDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred -CcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEEe
Confidence 33567789999999999998 98321121 223456999999999985
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=3.7e-32 Score=243.75 Aligned_cols=178 Identities=26% Similarity=0.460 Sum_probs=140.7
Q ss_pred eeeeCCCeEEecCCCEEEEEEcCC----------CcceEEE--cccEEeEEEEEEEEecCCCCCccEEEEEEecCC----
Q 023204 30 ITWGDGRAKMLNNGDLLTLSLDKA----------SGSGFQS--KNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPG---- 93 (286)
Q Consensus 30 ~~w~~~nv~~~~~G~~l~L~ld~~----------sGs~i~S--k~~~~YG~~eariKlp~g~s~G~~~AFwl~~~~---- 93 (286)
..+.++|+.+. +|. |.|+..+. ++++|.| ++.|+||+||||||+|.+ +|++|||||++..
T Consensus 33 ~~~~~~nv~v~-~G~-L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYVE-DGN-LVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEEE-CCE-EEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 35677899885 564 88887432 3578999 899999999999999988 7999999999863
Q ss_pred --CCCCeEE-EEEcCCCCCCCeEEEeeeecCCCC----CcceeeecCC-CCCCCcEEEEEEEcCCeEEEEECCeeEEEEe
Q 023204 94 --STWDEID-FEFLGNLSGDPYTLHTNVFTNGKG----DREQQFHLWF-DPAADFHTYSILWNPQRIVFSVDGTPIREFK 165 (286)
Q Consensus 94 --p~~~EID-~E~lG~~~g~~~~~qtnv~~~g~~----~~~~~~~l~f-dp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~ 165 (286)
|..+||| ||++|+. +..+++++|..+.. .....+.+.. ++.++||+|+|+|+|++|+|||||+++++++
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 5679999 7999974 45788888877653 2233455544 6789999999999999999999999999998
Q ss_pred ccCCCC-CCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEe
Q 023204 166 NSESIG-VPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNAE 218 (286)
Q Consensus 166 ~~~~~g-~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 218 (286)
+..... ..+|+++||+|+||++++++|+ |.. ......|..|.||+|||.
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRVY 235 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEEC
Confidence 754321 2356679999999999999999 431 233567889999999984
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=3e-30 Score=236.25 Aligned_cols=170 Identities=26% Similarity=0.348 Sum_probs=126.6
Q ss_pred CCCeEEecCCCEEEEEEcCC-------------------CcceEEEcccEEeEEEEEEEEecC-CCCCccEEEEEEecC-
Q 023204 34 DGRAKMLNNGDLLTLSLDKA-------------------SGSGFQSKNEYLYGKIDMQLKLVP-GNSAGTVTAYYLKSP- 92 (286)
Q Consensus 34 ~~nv~~~~~G~~l~L~ld~~-------------------sGs~i~Sk~~~~YG~~eariKlp~-g~s~G~~~AFwl~~~- 92 (286)
++|+.+. +|. |.|++.+. +++++.||.+|+|||||||||+++ + .|+||||||+++
T Consensus 43 ~~Nv~v~-dG~-L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVIS-NGI-LELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEEe-CCE-EEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 4677664 575 88887432 457889999999999999999865 5 799999999984
Q ss_pred --------CCCCCeEE-EEEcCCC---CCCC----eEEEeeeecCCCCC--c--------ceeeecCCCCCCCcEEEEEE
Q 023204 93 --------GSTWDEID-FEFLGNL---SGDP----YTLHTNVFTNGKGD--R--------EQQFHLWFDPAADFHTYSIL 146 (286)
Q Consensus 93 --------~p~~~EID-~E~lG~~---~g~~----~~~qtnv~~~g~~~--~--------~~~~~l~fdp~~dfHtY~i~ 146 (286)
+|.++||| ||.+|.. .+++ ..+|++++.++.+. + .+.+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 46789999 8888753 1222 34666555554321 1 12456778999999999999
Q ss_pred EcCCeEEEEECCeeEEEEeccCCCCCCCCCCCCcEEEEeeeeCC---------CccCCCCccccCCCCCCeEEEEeEEEE
Q 023204 147 WNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNAD---------DWATRGGLVKTDWTHAPFTASYRNFNA 217 (286)
Q Consensus 147 Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg---------~Wat~GG~~~~d~~~~Pf~~~~~~~~v 217 (286)
|+|++|+|||||++++++.+. +.. +||.|.+++-... .|+ |+. .+.+.+|-.|+||+|||
T Consensus 199 W~~~~i~~yvDg~~~~~~~~~------~w~-~~~~~~~~~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv 267 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPNK------YWH-RPMNVTLSLGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRV 267 (269)
T ss_pred EeCCEEEEEECCEEEEEEcCC------ccc-cccEEeeccccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEE
Confidence 999999999999999998742 333 7888888875433 244 443 34568899999999998
Q ss_pred e
Q 023204 218 E 218 (286)
Q Consensus 218 ~ 218 (286)
.
T Consensus 268 ~ 268 (269)
T cd02177 268 W 268 (269)
T ss_pred e
Confidence 5
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.97 E-value=4.1e-30 Score=238.06 Aligned_cols=181 Identities=20% Similarity=0.195 Sum_probs=125.5
Q ss_pred eeeCCCeEEecCCCEEEEEEcC-------CCcceEEE--cccEEeEEEEEEEEecCC-CCCccEEEEEEecC--------
Q 023204 31 TWGDGRAKMLNNGDLLTLSLDK-------ASGSGFQS--KNEYLYGKIDMQLKLVPG-NSAGTVTAYYLKSP-------- 92 (286)
Q Consensus 31 ~w~~~nv~~~~~G~~l~L~ld~-------~sGs~i~S--k~~~~YG~~eariKlp~g-~s~G~~~AFwl~~~-------- 92 (286)
.+.++|+.+. +|. |.|++.+ .++++|.| |+.|+||+||||||||.+ ...|+||||||+++
T Consensus 37 ~Y~~~nv~v~-~G~-L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~~ 114 (295)
T cd02180 37 WYDPDAVTTI-NGS-LRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYLA 114 (295)
T ss_pred EecCcCeEec-CCe-EEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccccc
Confidence 4556888774 565 7887753 25688998 788999999999999974 23799999999984
Q ss_pred -----CCC------CCeEE-EEEcCCCCC-CCe---EEE----------------eeeecC------CC-CCcce-ee--
Q 023204 93 -----GST------WDEID-FEFLGNLSG-DPY---TLH----------------TNVFTN------GK-GDREQ-QF-- 130 (286)
Q Consensus 93 -----~p~------~~EID-~E~lG~~~g-~~~---~~q----------------tnv~~~------g~-~~~~~-~~-- 130 (286)
+|. .+||| ||.+|.+.. ... ++| ..+|.. .. ++..+ ..
T Consensus 115 ~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 194 (295)
T cd02180 115 TTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAISC 194 (295)
T ss_pred cccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccccc
Confidence 353 49999 999985430 111 111 111211 00 11111 01
Q ss_pred --ecCC----CCCCCcEEEEEEEcC-----CeEEEEECCeeEEEEeccCCC------CCCCCCCCCcEEEEeeeeCCCcc
Q 023204 131 --HLWF----DPAADFHTYSILWNP-----QRIVFSVDGTPIREFKNSESI------GVPFPKNQPMRIYSSLWNADDWA 193 (286)
Q Consensus 131 --~l~f----dp~~dfHtY~i~Wtp-----~~I~fyVDg~~vr~~~~~~~~------g~~~P~~~Pm~l~lnlw~gg~Wa 193 (286)
.++. ...++||+|+|+|+| ++|+|||||+++++++..... ...+| ++||+|+||+++||+|+
T Consensus 195 ~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w~ 273 (295)
T cd02180 195 VTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNFQ 273 (295)
T ss_pred ccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEeccccC
Confidence 1111 125789999999999 899999999999999865311 12345 49999999999999998
Q ss_pred CCCCccccCCCCCCeEEEEeEEEEe
Q 023204 194 TRGGLVKTDWTHAPFTASYRNFNAE 218 (286)
Q Consensus 194 t~GG~~~~d~~~~Pf~~~~~~~~v~ 218 (286)
|. +.+-...|..|+||+|||.
T Consensus 274 ---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 274 ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred ---CC-CcccCCCCCEEEEEEEEEE
Confidence 42 1344667999999999995
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.97 E-value=1.5e-29 Score=230.76 Aligned_cols=180 Identities=14% Similarity=0.159 Sum_probs=125.2
Q ss_pred eeeCCCeEEecCCCEEEEEEcCC-----CcceEEEcccE--Ee----EEEEEEEEecCCC---CCccEEEEEEecC----
Q 023204 31 TWGDGRAKMLNNGDLLTLSLDKA-----SGSGFQSKNEY--LY----GKIDMQLKLVPGN---SAGTVTAYYLKSP---- 92 (286)
Q Consensus 31 ~w~~~nv~~~~~G~~l~L~ld~~-----sGs~i~Sk~~~--~Y----G~~eariKlp~g~---s~G~~~AFwl~~~---- 92 (286)
+.+++|+.+..+|. |.|+..+. ++++|.|+.++ .| |+||||||+|.+. ..|+||||||++.
T Consensus 42 ~~~~~n~~v~~dG~-L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNGT-LQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCCe-EEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 45568998865675 77877443 45788886654 33 4899999999741 3699999999985
Q ss_pred ----CCCCCeEE-EEEcCCCCCCCeEEEeeeecCC-CC--Cccee-ee-cCCCCCCCcEEEEEEEcC-----CeEEEEEC
Q 023204 93 ----GSTWDEID-FEFLGNLSGDPYTLHTNVFTNG-KG--DREQQ-FH-LWFDPAADFHTYSILWNP-----QRIVFSVD 157 (286)
Q Consensus 93 ----~p~~~EID-~E~lG~~~g~~~~~qtnv~~~g-~~--~~~~~-~~-l~fdp~~dfHtY~i~Wtp-----~~I~fyVD 157 (286)
+|..+||| ||..|.. +...++ +|... .+ ..+.. .. ....+.++||+|+|+|++ ++|+||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~~---~~~~~t-~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvD 196 (259)
T cd02182 121 NGTNWPACGELDIMENVNGL---STGYGT-LHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLD 196 (259)
T ss_pred CCCCCCccceeeeeeccCCC---CceEEE-EeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEEC
Confidence 36779999 9999864 333333 44322 11 11111 10 011234799999999997 99999999
Q ss_pred CeeEEEEeccCCC---CCCCCCCCCcEEEEeeeeCCCccCCCCccc-cCCCCCCeEEEEeEEEEe
Q 023204 158 GTPIREFKNSESI---GVPFPKNQPMRIYSSLWNADDWATRGGLVK-TDWTHAPFTASYRNFNAE 218 (286)
Q Consensus 158 g~~vr~~~~~~~~---g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~-~d~~~~Pf~~~~~~~~v~ 218 (286)
|+++++++..... ..+.|+++||+|+||+++||+|+ |... ..-...|..|.||+|||.
T Consensus 197 G~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~---~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 197 GVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP---GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred CEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC---CCCCcccccCCCceEEEEEEEEe
Confidence 9999999864221 12234569999999999999998 3211 112457899999999985
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=6.9e-28 Score=226.91 Aligned_cols=138 Identities=21% Similarity=0.243 Sum_probs=104.9
Q ss_pred CcceEEE--cccEEeEEEEEEEEecCCCCCccEEEEEEecC------CCCCCeEE-EEEcCCCCCCC-------eEEEee
Q 023204 54 SGSGFQS--KNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP------GSTWDEID-FEFLGNLSGDP-------YTLHTN 117 (286)
Q Consensus 54 sGs~i~S--k~~~~YG~~eariKlp~g~s~G~~~AFwl~~~------~p~~~EID-~E~lG~~~g~~-------~~~qtn 117 (286)
++++|.| |++|+|||||+|||||.| .|+||||||++. +|..+||| ||.+|+..... ..++..
T Consensus 100 ~Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~t 177 (330)
T cd08024 100 MSARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGST 177 (330)
T ss_pred EEEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEE
Confidence 3567888 788999999999999998 699999999985 47789999 99999754221 245555
Q ss_pred eecCCCCC----cce---eeecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeccC-------------------CCC
Q 023204 118 VFTNGKGD----REQ---QFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNSE-------------------SIG 171 (286)
Q Consensus 118 v~~~g~~~----~~~---~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~-------------------~~g 171 (286)
+|...... +.. ......+..++||+|+|+|+|++|+|||||+++++++... ..+
T Consensus 178 lH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~ 257 (330)
T cd08024 178 LHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGG 257 (330)
T ss_pred EEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccC
Confidence 66432211 111 1112235568899999999999999999999999998521 112
Q ss_pred CCCCCCCCcEEEEeeeeCCCcc
Q 023204 172 VPFPKNQPMRIYSSLWNADDWA 193 (286)
Q Consensus 172 ~~~P~~~Pm~l~lnlw~gg~Wa 193 (286)
...|+++|+||+|||++||.|.
T Consensus 258 ~~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 258 KMAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred cCCCCCCCEEEEEEEEecCCCC
Confidence 4579999999999999999886
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.95 E-value=1.2e-27 Score=224.25 Aligned_cols=134 Identities=19% Similarity=0.227 Sum_probs=98.6
Q ss_pred cceEEE--cccEEeEEEEEEEEecCCCCCccEEEEEEecCC-------CCCCeEE-EEEcCCCC----CC---CeEEEee
Q 023204 55 GSGFQS--KNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPG-------STWDEID-FEFLGNLS----GD---PYTLHTN 117 (286)
Q Consensus 55 Gs~i~S--k~~~~YG~~eariKlp~g~s~G~~~AFwl~~~~-------p~~~EID-~E~lG~~~----g~---~~~~qtn 117 (286)
+++|.| +++|+|||+|+|||||.| .|+||||||++.+ |..+||| ||.+|+.. |. ..++|..
T Consensus 98 Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g 175 (321)
T cd02179 98 SARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGG 175 (321)
T ss_pred eeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEcc
Confidence 577888 578999999999999999 6999999999862 5689999 99999852 11 0133333
Q ss_pred eecCCCC-Ccce---eeecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEeccCC----------------CCCCCCCC
Q 023204 118 VFTNGKG-DREQ---QFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNSES----------------IGVPFPKN 177 (286)
Q Consensus 118 v~~~g~~-~~~~---~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~----------------~g~~~P~~ 177 (286)
.+..... .+.. ......+.+++||+|+|+|+|++|+|||||+++++++.... .....|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD 255 (321)
T cd02179 176 PVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFD 255 (321)
T ss_pred cccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCC
Confidence 3322111 1110 11112345789999999999999999999999999986321 12356999
Q ss_pred CCcEEEEeeeeCC
Q 023204 178 QPMRIYSSLWNAD 190 (286)
Q Consensus 178 ~Pm~l~lnlw~gg 190 (286)
+|++|+|||++||
T Consensus 256 ~~FyliLNlAVGG 268 (321)
T cd02179 256 KEFYLSLGVGVGG 268 (321)
T ss_pred CCeEEEEEEEecC
Confidence 9999999999988
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.4e-24 Score=203.83 Aligned_cols=155 Identities=27% Similarity=0.448 Sum_probs=128.8
Q ss_pred eeeeCCCeEEecCCCEEEEEEcC-------CCcceEEEccc--EEeEEEEEEEEecCCCCCccEEEEEEecC----CCCC
Q 023204 30 ITWGDGRAKMLNNGDLLTLSLDK-------ASGSGFQSKNE--YLYGKIDMQLKLVPGNSAGTVTAYYLKSP----GSTW 96 (286)
Q Consensus 30 ~~w~~~nv~~~~~G~~l~L~ld~-------~sGs~i~Sk~~--~~YG~~eariKlp~g~s~G~~~AFwl~~~----~p~~ 96 (286)
..|..+++.+..+| .|.|.+++ +++++++|..+ |+||++|+|||++.+ .|+|+||||++. +..+
T Consensus 74 ~~w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~wp 150 (355)
T COG2273 74 LTWYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGWP 150 (355)
T ss_pred cceeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCCC
Confidence 46777777776544 58887753 46788998666 999999999999976 899999999985 3567
Q ss_pred CeEEEEEcCCCCCCCeEEEeeeecCCCCCcceeeecCC-CCCCCcEEEEEEEcCCeEEEEECCeeEEEEeccCCCCCCCC
Q 023204 97 DEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWF-DPAADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFP 175 (286)
Q Consensus 97 ~EID~E~lG~~~g~~~~~qtnv~~~g~~~~~~~~~l~f-dp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P 175 (286)
+|||+|++|+... +..+|+|.+.++.++.+....+++ +..++||+|+++|.++.|+|||||++++++... ...|
T Consensus 151 ~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~~~ 225 (355)
T COG2273 151 DEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DYIP 225 (355)
T ss_pred cceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----ccCc
Confidence 9999999997542 356999999998887777777777 888999999999999999999999999999854 2347
Q ss_pred CCCCcEEEEeeeeCCCcc
Q 023204 176 KNQPMRIYSSLWNADDWA 193 (286)
Q Consensus 176 ~~~Pm~l~lnlw~gg~Wa 193 (286)
. .||++++|+|.++.+.
T Consensus 226 ~-~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 226 Q-IPFYVLVNLWMGGYAG 242 (355)
T ss_pred C-CcceeEEeecccCccC
Confidence 7 9999999999998765
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.80 E-value=3.1e-20 Score=128.87 Aligned_cols=44 Identities=50% Similarity=1.240 Sum_probs=36.5
Q ss_pred CCcccccC---CCHHHHHHHHHHhhcCeEEecccCCCCCCCCCCCCC
Q 023204 240 NGAWFSQE---LDSTNQSRLKWVQKNYMIYNYCADTKRFPQGLPAEC 283 (286)
Q Consensus 240 ~~~~~~~~---l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~~~ec 283 (286)
...||++. |+++|+++|+|||+||||||||.|++|||.++|+||
T Consensus 5 ~~~w~~~~~~~L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 5 SKSWWNQPYAQLSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TTSGGCSCCCS--HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CcccccCcccCCCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 35688865 999999999999999999999999999998679999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.62 E-value=5.6e-15 Score=144.14 Aligned_cols=189 Identities=23% Similarity=0.335 Sum_probs=123.8
Q ss_pred CCCeEEecCCCEEEEEEcCC-------CcceEEE--cccEEeEEEEEEEEecCC-CCCccEEEEEEecC-----------
Q 023204 34 DGRAKMLNNGDLLTLSLDKA-------SGSGFQS--KNEYLYGKIDMQLKLVPG-NSAGTVTAYYLKSP----------- 92 (286)
Q Consensus 34 ~~nv~~~~~G~~l~L~ld~~-------sGs~i~S--k~~~~YG~~eariKlp~g-~s~G~~~AFwl~~~----------- 92 (286)
++.|.. .+| .|.|++++. .++.++| |+-|+-|++|++++||.. +..|+|||||++++
T Consensus 160 p~~vtt-~~G-~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast~ 237 (504)
T PF03935_consen 160 PDAVTT-ENG-SLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGASTD 237 (504)
T ss_pred CCCcEe-eCC-EEEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccccC
Confidence 455544 355 488888653 3566777 788889999999999854 36799999999975
Q ss_pred --C------------C---------------------------------CCCeEE-EEEcCCCCC-C---CeEEEeee--
Q 023204 93 --G------------S---------------------------------TWDEID-FEFLGNLSG-D---PYTLHTNV-- 118 (286)
Q Consensus 93 --~------------p---------------------------------~~~EID-~E~lG~~~g-~---~~~~qtnv-- 118 (286)
+ | .-.||| ||....... . ...+|..-
T Consensus 238 g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~d 317 (504)
T PF03935_consen 238 GMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPFD 317 (504)
T ss_pred ceecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeecccc
Confidence 0 0 014999 997754221 0 11233211
Q ss_pred ------------ecCCC-------CCccee-ee----c---CC--CCCCCcEEEEEEEcCC-----eEEEEECCeeEEEE
Q 023204 119 ------------FTNGK-------GDREQQ-FH----L---WF--DPAADFHTYSILWNPQ-----RIVFSVDGTPIREF 164 (286)
Q Consensus 119 ------------~~~g~-------~~~~~~-~~----l---~f--dp~~dfHtY~i~Wtp~-----~I~fyVDg~~vr~~ 164 (286)
|.... |+.-|+ +. + ++ ....+||+|++||.|. .|+|+|||+++.++
T Consensus 318 ~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti 397 (504)
T PF03935_consen 318 IWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTI 397 (504)
T ss_pred cCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEEE
Confidence 10000 011111 11 1 12 1237899999999874 89999999999999
Q ss_pred eccCC------CCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCC--CCeEEEEeEEEEeeeecCCCCCCCCCC
Q 023204 165 KNSES------IGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTH--APFTASYRNFNAEACVWSNGKSSCASN 232 (286)
Q Consensus 165 ~~~~~------~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~--~Pf~~~~~~~~v~~c~~~~~~~~c~~~ 232 (286)
..... ....+|. .||+|++|+....+|+ . +||.+ +|..|.||+|||..=. +...-.|.+.
T Consensus 398 ~a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~----~--vd~~~L~FP~~M~IDYVRVYQ~~-~~~~vgCDP~ 465 (504)
T PF03935_consen 398 NAEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFG----Y--VDWNHLCFPATMRIDYVRVYQPE-DAINVGCDPP 465 (504)
T ss_pred EhhhcCCCCCcCccccCc-CCceeeeccccccccC----c--cccccccccceEEEeEEEEeccC-CCCeeeeCCC
Confidence 86532 1235787 9999999999999996 2 56654 6889999999997642 1123568754
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.61 E-value=1e-14 Score=134.31 Aligned_cols=153 Identities=25% Similarity=0.353 Sum_probs=100.2
Q ss_pred CeEEecCCCEEEEEEcCCC---------cceEEEcccEEeEEEEEEE-EecCCCCCccEEEEEEecC-CCCCCeEE-EEE
Q 023204 36 RAKMLNNGDLLTLSLDKAS---------GSGFQSKNEYLYGKIDMQL-KLVPGNSAGTVTAYYLKSP-GSTWDEID-FEF 103 (286)
Q Consensus 36 nv~~~~~G~~l~L~ld~~s---------Gs~i~Sk~~~~YG~~eari-Klp~g~s~G~~~AFwl~~~-~p~~~EID-~E~ 103 (286)
.+.+ .+| .|.|.+|..+ +++|.||++|.+|++|+|+ |||.+ .|+||||||++. +|..+||| ||.
T Consensus 43 L~~v-~~g-~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~ 118 (293)
T cd02181 43 LAYV-NSG-NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEG 118 (293)
T ss_pred CeEe-eCC-eEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCCCCCCCcEEEEec
Confidence 3444 345 4888886532 4689999999999999998 99987 799999999986 69999999 999
Q ss_pred cCCCCCCCeEEEee----eecCC--CC-------------C--------cceeeecCCCCCCCcEEEEEEEcCCeEEEEE
Q 023204 104 LGNLSGDPYTLHTN----VFTNG--KG-------------D--------REQQFHLWFDPAADFHTYSILWNPQRIVFSV 156 (286)
Q Consensus 104 lG~~~g~~~~~qtn----v~~~g--~~-------------~--------~~~~~~l~fdp~~dfHtY~i~Wtp~~I~fyV 156 (286)
++.......++||. +-..+ .+ + ....+-..|+ ..+=-+|+++|+.+.|..+.
T Consensus 119 vn~~~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWf 197 (293)
T cd02181 119 VNLQTSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWF 197 (293)
T ss_pred cCCCCceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEE
Confidence 98644333456652 11110 00 0 0011222344 35568999999999998665
Q ss_pred C---CeeEEEEeccCC------CCCCCCC--------CCCcEEEEeeeeCCCcc
Q 023204 157 D---GTPIREFKNSES------IGVPFPK--------NQPMRIYSSLWNADDWA 193 (286)
Q Consensus 157 D---g~~vr~~~~~~~------~g~~~P~--------~~Pm~l~lnlw~gg~Wa 193 (286)
- .+|--....... +-..||. -++++|++|+=-=|+||
T Consensus 198 f~R~~iP~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 198 FPRGSIPADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred ecCCCCCcccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 2 222211111110 1123442 17899999999999999
No 18
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=94.82 E-value=1.8 Score=35.15 Aligned_cols=70 Identities=10% Similarity=0.145 Sum_probs=45.1
Q ss_pred CCCCcEEEEEEEcC--CeEEEEECCeeEEEEeccCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEe
Q 023204 136 PAADFHTYSILWNP--QRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYR 213 (286)
Q Consensus 136 p~~dfHtY~i~Wtp--~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~ 213 (286)
+...||...+.++. .+|++||||+++.+.... ..+...|+.+-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 34789999999998 799999999988654321 1122234333211111 11 12358999999
Q ss_pred EEEEeeeec
Q 023204 214 NFNAEACVW 222 (286)
Q Consensus 214 ~~~v~~c~~ 222 (286)
.++|..++.
T Consensus 122 evriy~~aL 130 (133)
T smart00560 122 EVRVYNRAL 130 (133)
T ss_pred EEEEecccc
Confidence 999988753
No 19
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=93.76 E-value=1.8 Score=34.34 Aligned_cols=66 Identities=11% Similarity=0.265 Sum_probs=39.5
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeeEEEEeccCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEE
Q 023204 137 AADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFN 216 (286)
Q Consensus 137 ~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~ 216 (286)
...||..++.|....+.+||||+++.+...... ...+...+ +. .|... ....+|...++.++
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~--~~~~~~~~--~~----iG~~~----------~~~~~~~g~i~~~~ 145 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN--ISLNSNGP--LF----IGGSG----------GGSSPFNGYIDDLR 145 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEESS--SSTTSCCE--EE----ESS-S----------TT--B-EEEEEEEE
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccCC--cCCCCcce--EE----EeecC----------CCCCceEEEEEEEE
Confidence 489999999999999999999998865433211 01111122 21 22221 23578899999999
Q ss_pred Eeee
Q 023204 217 AEAC 220 (286)
Q Consensus 217 v~~c 220 (286)
|...
T Consensus 146 i~~~ 149 (157)
T PF13385_consen 146 IYNR 149 (157)
T ss_dssp EESS
T ss_pred EECc
Confidence 8654
No 20
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=91.84 E-value=2.6 Score=35.46 Aligned_cols=102 Identities=18% Similarity=0.321 Sum_probs=55.8
Q ss_pred CCcceEEEcccEEeEEEEEEEEecCCCCCccEEEEEEecC-------CCCCCeEEEEEcCCCCCCCeEEEeeeecCCCCC
Q 023204 53 ASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAYYLKSP-------GSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGD 125 (286)
Q Consensus 53 ~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~-------~p~~~EID~E~lG~~~g~~~~~qtnv~~~g~~~ 125 (286)
..++-+.++..|.=..+++.+|+.++ | -.++++-.. ....-|+.+.--+.. .......+.
T Consensus 41 ~~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~---------~~~~~~~G~ 107 (185)
T PF06439_consen 41 SGGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGG---------TGLPNSTGS 107 (185)
T ss_dssp SSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTC---------STTTTSTTS
T ss_pred CCcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCc---------cCCCCccce
Confidence 34566888888888899999998544 2 344444332 022334443322111 000011111
Q ss_pred cc------eee-ecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEecc
Q 023204 126 RE------QQF-HLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKNS 167 (286)
Q Consensus 126 ~~------~~~-~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~ 167 (286)
.. ... ....-+..+||++.|.-..++|+.+|||++|.+++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 108 LYDEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp BTTTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred EEEeccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 00 000 1112246899999999999999999999999998754
No 21
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=90.48 E-value=5 Score=34.53 Aligned_cols=88 Identities=16% Similarity=0.219 Sum_probs=49.7
Q ss_pred EEEEEEEecCCCCCccEEEEEEecCCCCCCeEEEEEcCCCCCCCeEEEeeeecCCCCCcceeeecC-CC-CCCCcEEEEE
Q 023204 68 KIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLW-FD-PAADFHTYSI 145 (286)
Q Consensus 68 ~~eariKlp~g~s~G~~~AFwl~~~~p~~~EID~E~lG~~~g~~~~~qtnv~~~g~~~~~~~~~l~-fd-p~~dfHtY~i 145 (286)
.+.+.+|..+. ..|+.-++.-. + ...++-++.-|. + ..+. ++..+..+..+..... .+ ....||..++
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~-~--~~~~l~v~l~g~---~-~~~~--~~~~~~~g~~~~~~f~~~~l~dg~WH~lal 124 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA-Q--NVRQFGLEVDGR---A-NTLL--LRYQGVDGKQHTVSFRNLPLADGQWHKLAL 124 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC-C--CcEEEEEEEeCC---c-cEEE--EEECCCCCcEEEEeecCCccccCCceEEEE
Confidence 46677776543 35555554432 1 333454555443 1 2233 2222332222322211 11 2478999999
Q ss_pred EEcCCeEEEEECCeeEEEEe
Q 023204 146 LWNPQRIVFSVDGTPIREFK 165 (286)
Q Consensus 146 ~Wtp~~I~fyVDg~~vr~~~ 165 (286)
.+..+.|++|||++++.+..
T Consensus 125 ~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 125 SVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEeCCEEEEEECCcccccee
Confidence 99999999999999987764
No 22
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=86.81 E-value=21 Score=31.28 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=42.2
Q ss_pred CCCcEEEEEEEcC--CeEEEEECCeeEEEEeccCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeE
Q 023204 137 AADFHTYSILWNP--QRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRN 214 (286)
Q Consensus 137 ~~dfHtY~i~Wtp--~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~ 214 (286)
..+||...+.|+. ..+.+||||+++. ...-..+..++. +-.|+|.- ..+.+ ||. .+ ....|.-.++.
T Consensus 89 ~g~W~hvc~tw~~~~g~~~lyvnG~~~~--~~~~~~g~~i~~--~G~lvlGq-~qd~~---gg~--f~-~~~~f~G~i~~ 157 (206)
T smart00159 89 DGKWHHICTTWESSSGIAELWVDGKPGV--RKGLAKGYTVKP--GGSIILGQ-EQDSY---GGG--FD-ATQSFVGEIGD 157 (206)
T ss_pred CCceEEEEEEEECCCCcEEEEECCEEcc--cccccCCcEECC--CCEEEEEe-cccCC---CCC--CC-CCcceeEEEee
Confidence 4789999999974 4699999999862 111112222222 22344433 12222 232 23 34568888888
Q ss_pred EEEeee
Q 023204 215 FNAEAC 220 (286)
Q Consensus 215 ~~v~~c 220 (286)
|+|-.-
T Consensus 158 v~iw~~ 163 (206)
T smart00159 158 LNMWDS 163 (206)
T ss_pred eEEecc
Confidence 888554
No 23
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=85.38 E-value=24 Score=30.67 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=42.4
Q ss_pred CCCCcEEEEEEEc--CCeEEEEECCeeEEEEeccCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEe
Q 023204 136 PAADFHTYSILWN--PQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYR 213 (286)
Q Consensus 136 p~~dfHtY~i~Wt--p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~ 213 (286)
....||...+.|+ ...+.+||||+++.+-. -..+..++. ...|.|.-- ...+ ||. .+ ....|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~~--~g~l~lG~~-q~~~---gg~--~~-~~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVGP--GGSIILGQE-QDSY---GGG--FD-ATQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEECC--CCeEEEeec-ccCC---CCC--CC-CCcceEEEEc
Confidence 4578999999998 45699999999875432 111222222 122333211 0111 333 23 2457888888
Q ss_pred EEEEeee
Q 023204 214 NFNAEAC 220 (286)
Q Consensus 214 ~~~v~~c 220 (286)
.|+|..-
T Consensus 157 ~v~iw~~ 163 (201)
T cd00152 157 DVNMWDS 163 (201)
T ss_pred eeEEEcc
Confidence 8887543
No 24
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=84.29 E-value=1.9 Score=37.76 Aligned_cols=101 Identities=25% Similarity=0.363 Sum_probs=53.1
Q ss_pred cCCCcceEEEcccE---EeE-EEEEEEEecCCCCCccEEEEEEecCCCCCCeEEEEEcCCCCCCCeEEEeeeecCCCCCc
Q 023204 51 DKASGSGFQSKNEY---LYG-KIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDR 126 (286)
Q Consensus 51 d~~sGs~i~Sk~~~---~YG-~~eariKlp~g~s~G~~~AFwl~~~~p~~~EID~E~lG~~~g~~~~~qtnv~~~g~~~~ 126 (286)
.-..|+++-|++.- .+| +....+|+..| |..+-.+--+. ..--++|-.-. .|+ |-.+++ |.+.+
T Consensus 14 ~gw~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~--~r~l~~lsvn~--sG~---LvA~L~--g~ss~ 81 (198)
T PF09264_consen 14 AGWGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGS--KRYLPILSVNE--SGS---LVAELE--GQSSN 81 (198)
T ss_dssp EETTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESS--EEEEEEEEE-T--TS----EEEEET--TS-S-
T ss_pred eccccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCc--eEEEEEEEEcC--CCC---EEEEEe--cCCCc
Confidence 33677888775542 356 68888888776 55555544332 11111111111 111 111111 11111
Q ss_pred ceeeecC-CCCCCCcEEEEEEEcC--CeEEEEECCeeEEEEe
Q 023204 127 EQQFHLW-FDPAADFHTYSILWNP--QRIVFSVDGTPIREFK 165 (286)
Q Consensus 127 ~~~~~l~-fdp~~dfHtY~i~Wtp--~~I~fyVDg~~vr~~~ 165 (286)
.-+.+. +| -.+||.|.|.-.| ..-.|||||++|++..
T Consensus 82 -~~~~~~~~d-i~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 82 -TLLATTGAD-IHGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp -EEEE-CHHH-HCSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred -EEEeccccc-ccceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 112222 22 3589999999987 8899999999999853
No 25
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=83.84 E-value=5.6 Score=36.02 Aligned_cols=77 Identities=18% Similarity=0.308 Sum_probs=47.6
Q ss_pred EEEEEEEecCCC-----CCccEEEEEEecC---------------C-CCCCeEE-EEEcCCCCCCCeEEEeeeec-CCC-
Q 023204 68 KIDMQLKLVPGN-----SAGTVTAYYLKSP---------------G-STWDEID-FEFLGNLSGDPYTLHTNVFT-NGK- 123 (286)
Q Consensus 68 ~~eariKlp~g~-----s~G~~~AFwl~~~---------------~-p~~~EID-~E~lG~~~g~~~~~qtnv~~-~g~- 123 (286)
-|-.+.+||... ...=.||+||+.. + ..++|+| ||.|... +. .+.+.+|. +|.
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCcc
Confidence 367777888731 2356899999975 1 3689999 9999763 33 45555554 332
Q ss_pred -----CCcceeeecCCCCCCCcEEEEEEEcCC
Q 023204 124 -----GDREQQFHLWFDPAADFHTYSILWNPQ 150 (286)
Q Consensus 124 -----~~~~~~~~l~fdp~~dfHtY~i~Wtp~ 150 (286)
++...-+. -|++..-++++.++.+
T Consensus 179 ~~~~g~G~~~yf~---RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDYFK---RPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCccc---CCCCCCeEEEEEEcCC
Confidence 11111111 2567888888888643
No 26
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=80.79 E-value=27 Score=27.84 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=48.2
Q ss_pred EEeEEEEEEEEecCCCCCccEEEEEEecCCCCCCeEEEEEcCCCCCCCeEEEeeeecCCCCCcceeeecC--CCCCCCcE
Q 023204 64 YLYGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLW--FDPAADFH 141 (286)
Q Consensus 64 ~~YG~~eariKlp~g~s~G~~~AFwl~~~~p~~~EID~E~lG~~~g~~~~~qtnv~~~g~~~~~~~~~l~--fdp~~dfH 141 (286)
-....+++++|.... .|+. |++-+. ...+-+-+|... | .+...+.. + .....+... .+ ...||
T Consensus 19 ~~~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~---g---~l~~~~~~-g--~~~~~~~~~~~v~-dg~Wh 83 (151)
T cd00110 19 RTRLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELED---G---RLVLRYDL-G--SGSLVLSSKTPLN-DGQWH 83 (151)
T ss_pred cceeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEEC---C---EEEEEEcC-C--cccEEEEccCccC-CCCEE
Confidence 345567777776654 4654 233222 234555566653 2 23322222 2 122233322 22 46899
Q ss_pred EEEEEEcCCeEEEEECCeeEEEE
Q 023204 142 TYSILWNPQRIVFSVDGTPIREF 164 (286)
Q Consensus 142 tY~i~Wtp~~I~fyVDg~~vr~~ 164 (286)
...|.+....++++|||.++.+.
T Consensus 84 ~v~i~~~~~~~~l~VD~~~~~~~ 106 (151)
T cd00110 84 SVSVERNGRSVTLSVDGERVVES 106 (151)
T ss_pred EEEEEECCCEEEEEECCccEEee
Confidence 99999999999999999854433
No 27
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=69.98 E-value=46 Score=29.03 Aligned_cols=51 Identities=12% Similarity=0.366 Sum_probs=34.7
Q ss_pred CCCCCcEEEEE--EEcC---CeEEEEECCeeEEEEeccCCCCCCCCCCCCcEEEEeeeeC
Q 023204 135 DPAADFHTYSI--LWNP---QRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA 189 (286)
Q Consensus 135 dp~~dfHtY~i--~Wtp---~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~g 189 (286)
.+...||.+.| .|.+ ..|..++||+++..+.... .++.....++-+.|.-.
T Consensus 149 ~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~ 204 (224)
T PF14099_consen 149 VERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRS 204 (224)
T ss_dssp S-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEH
T ss_pred cCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECC
Confidence 34588999986 5765 5699999999999887632 13323566777777653
No 28
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=69.73 E-value=29 Score=36.17 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=37.9
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeeEEEEeccCCCCCCCCCCCCcEEEEeeeeCCCcc
Q 023204 137 AADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWA 193 (286)
Q Consensus 137 ~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wa 193 (286)
..+||.|.+.-+--.++.||||+...-..-. ..||- .|.++-..|=+|-=|.
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwpl-Hpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWPL-HPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec----cCCcc-CcccccceeEEeeecc
Confidence 3789999999986669999999854322111 34777 6777777777777787
No 29
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=66.15 E-value=30 Score=30.96 Aligned_cols=60 Identities=27% Similarity=0.419 Sum_probs=37.8
Q ss_pred CCcEEEEEEEcCCeEEEEECCeeEEEEeccCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEE
Q 023204 138 ADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNA 217 (286)
Q Consensus 138 ~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v 217 (286)
..|+.-.|.=....|.|.|||.+|...+..... ..|-- .+|++..- .=+|.+|.|+++.|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~~--~gPvl-----------------~~G~IGfR-qMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGST--YGPVL-----------------RGGRIGFR-QMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SSS--SSS--------------------SBEEEEE-EETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCCc--cCCcc-----------------cCcEeeee-ccchhhhhhccccC
Confidence 467777888899999999999999998754321 12320 14553221 23799999999986
No 30
>smart00282 LamG Laminin G domain.
Probab=63.02 E-value=35 Score=26.93 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.7
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeeEEEE
Q 023204 137 AADFHTYSILWNPQRIVFSVDGTPIREF 164 (286)
Q Consensus 137 ~~dfHtY~i~Wtp~~I~fyVDg~~vr~~ 164 (286)
...||.-.|.-....++.+|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 3689999999999999999999755433
No 31
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=62.90 E-value=66 Score=24.49 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=46.9
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeeEEEEeccCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEE
Q 023204 137 AADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFN 216 (286)
Q Consensus 137 ~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~ 216 (286)
...||+-.|.-+...++..||+............ . .-+...-.++.||......... .-....|.--+++++
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~----~--~~~~~~~~l~iGg~~~~~~~~~--~~~~~~f~Gci~~l~ 124 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSS----S--DSLDPDGSLYIGGLPESNQPSG--SVDTPGFVGCIRDLR 124 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSSTT----H--HCBESEEEEEESSTTTTCTCTT--SSTTSB-EEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEeccccc----e--ecccCCCCEEEecccCcccccc--ccCCCCcEEEcCeEE
Confidence 4789999999999999999999988877643210 0 0233444577777644221111 101566777777777
Q ss_pred Eee
Q 023204 217 AEA 219 (286)
Q Consensus 217 v~~ 219 (286)
|++
T Consensus 125 vng 127 (128)
T PF02210_consen 125 VNG 127 (128)
T ss_dssp ETT
T ss_pred ECC
Confidence 753
No 32
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=57.65 E-value=1.3e+02 Score=26.36 Aligned_cols=133 Identities=14% Similarity=0.232 Sum_probs=69.8
Q ss_pred ccEEeEEEEEEEEecCCCCCccEEEEEEecCCC----------CCCeEEEEEcCCCCCCCeEEEeeeecCCCCCcceeee
Q 023204 62 NEYLYGKIDMQLKLVPGNSAGTVTAYYLKSPGS----------TWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFH 131 (286)
Q Consensus 62 ~~~~YG~~eariKlp~g~s~G~~~AFwl~~~~p----------~~~EID~E~lG~~~g~~~~~qtnv~~~g~~~~~~~~~ 131 (286)
+...-|.+-+|.|.... . .+-|++-.++.. ..+++=||+.+......+...+.+...+ .
T Consensus 30 k~L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~--------~ 98 (190)
T PF02973_consen 30 KKLEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRG--------G 98 (190)
T ss_dssp CT-SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--S--------E
T ss_pred hcccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEecc--------c
Confidence 34456777777776433 3 445566555420 1237778888776544444444311110 0
Q ss_pred cCCCCCCCcEEEEEEEc--CCeEEEEECCeeEEEEeccCCCCCCCCCCCC--cEEEEeeeeCCCccCCCCccccCCCCCC
Q 023204 132 LWFDPAADFHTYSILWN--PQRIVFSVDGTPIREFKNSESIGVPFPKNQP--MRIYSSLWNADDWATRGGLVKTDWTHAP 207 (286)
Q Consensus 132 l~fdp~~dfHtY~i~Wt--p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~P--m~l~lnlw~gg~Wat~GG~~~~d~~~~P 207 (286)
-+. ...||+-++.=+ ..+..+|+||..+.+..... ..|-.+-| -.+.+ |+. -++|. ...|
T Consensus 99 ~~~--~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n~~~i----G~t--~R~g~-----~~y~ 162 (190)
T PF02973_consen 99 YKN--NVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLNSVQI----GGT--NRAGS-----NAYP 162 (190)
T ss_dssp ETT--EES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT--EEEE----SSE--EETTE-----EES-
T ss_pred ccC--CceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCceEEE----cce--EeCCC-----ceec
Confidence 111 257888888876 67899999998888775432 22322221 12222 221 12232 3579
Q ss_pred eEEEEeEEEEeeee
Q 023204 208 FTASYRNFNAEACV 221 (286)
Q Consensus 208 f~~~~~~~~v~~c~ 221 (286)
|.-.+++++|..++
T Consensus 163 f~G~I~~l~iYn~a 176 (190)
T PF02973_consen 163 FNGTIDNLKIYNRA 176 (190)
T ss_dssp -EEEEEEEEEESS-
T ss_pred ccceEEEEEEEcCc
Confidence 99999999998764
No 33
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=46.08 E-value=2e+02 Score=24.98 Aligned_cols=70 Identities=21% Similarity=0.375 Sum_probs=37.2
Q ss_pred CCCcEEEEEEEcC--CeEEEEECCeeEEEEeccCCCCCCCCCCCCcEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeE
Q 023204 137 AADFHTYSILWNP--QRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRN 214 (286)
Q Consensus 137 ~~dfHtY~i~Wtp--~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~ 214 (286)
...||.+-+.|+. ..+.+|+||+....-. -..|...|. . -.++|.-- .+ .-||.. | ....|.-++..
T Consensus 83 ~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~~~g~~i~~-g-G~~vlGQe-Qd---~~gG~f--d-~~q~F~G~i~~ 151 (195)
T PF00354_consen 83 DGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--LATGHSIPG-G-GTLVLGQE-QD---SYGGGF--D-ESQAFVGEISD 151 (195)
T ss_dssp TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--SSTT--B-S-S-EEEEESS--BS---BTTBTC--S-GGGB--EEEEE
T ss_pred CCCcEEEEEEEecCCcEEEEEECCEeccccc--ccCCceECC-C-CEEEECcc-cc---ccCCCc--C-CccEeeEEEec
Confidence 4799999999975 6799999999543322 223333443 2 22333321 11 123431 3 34578888888
Q ss_pred EEE
Q 023204 215 FNA 217 (286)
Q Consensus 215 ~~v 217 (286)
|++
T Consensus 152 ~~i 154 (195)
T PF00354_consen 152 FNI 154 (195)
T ss_dssp EEE
T ss_pred eEE
Confidence 876
No 34
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=44.21 E-value=36 Score=28.18 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=17.5
Q ss_pred CCCeEEecCCCEEEEEEcCCCcce
Q 023204 34 DGRAKMLNNGDLLTLSLDKASGSG 57 (286)
Q Consensus 34 ~~nv~~~~~G~~l~L~ld~~sGs~ 57 (286)
.+++.+...|..+.+.-|...|++
T Consensus 34 qs~~qv~g~G~V~~vLpdd~~Gsr 57 (131)
T PF11948_consen 34 QSDVQVSGCGTVVKVLPDDNKGSR 57 (131)
T ss_pred ccCeeEeccEEEEEECcccCCCCc
Confidence 467778777877777667778876
No 35
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=37.75 E-value=50 Score=25.12 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=32.6
Q ss_pred eeCCCeEEecCCCEEEEEEcCCCcceEEEcccEEeEEEEEEEEecCCCCCccEEE
Q 023204 32 WGDGRAKMLNNGDLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTA 86 (286)
Q Consensus 32 w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~A 86 (286)
..++.+.+.-.++.|+++..+..-..-.....+.||.|+=++.||.+-...-+.|
T Consensus 19 ~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A 73 (87)
T cd06482 19 FEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTY 73 (87)
T ss_pred CCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEE
Confidence 3455666655566688887543211101123579999999999997522333443
No 36
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=36.81 E-value=78 Score=23.25 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=34.5
Q ss_pred eeCCCeEEecCCCEEEEEEcCCCcceEEEcccEEeEEEEEEEEecCCCCCccEEEE
Q 023204 32 WGDGRAKMLNNGDLLTLSLDKASGSGFQSKNEYLYGKIDMQLKLVPGNSAGTVTAY 87 (286)
Q Consensus 32 w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AF 87 (286)
+.++++.+.-+++.|.++..+..... ...+.+|.|+=+++||..-....+.|-
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~vd~~~i~A~ 70 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEGVDPDSVTSS 70 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCCCChHHeEEE
Confidence 45677777666777888876533211 345678999999999975333444443
No 37
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=32.22 E-value=1.6e+02 Score=23.46 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=34.7
Q ss_pred eeecCCCCCcceeee-cCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEec
Q 023204 117 NVFTNGKGDREQQFH-LWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKN 166 (286)
Q Consensus 117 nv~~~g~~~~~~~~~-l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~ 166 (286)
|.+.+|..+.|++.. .+|.+ .+...-.|.=++++...+|||+++..+..
T Consensus 56 Ns~~~g~Wg~Eer~~~~pf~~-g~~F~l~i~~~~~~f~i~vng~~~~~F~~ 105 (127)
T cd00070 56 NSFLNGNWGPEERSGGFPFQP-GQPFELTILVEEDKFQIFVNGQHFFSFPH 105 (127)
T ss_pred cCCCCCEecHhhccCCCCCCC-CCeEEEEEEEcCCEEEEEECCEeEEEecC
Confidence 334445545565554 56654 44558889999999999999999987753
No 38
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=30.83 E-value=89 Score=26.58 Aligned_cols=37 Identities=24% Similarity=0.530 Sum_probs=28.9
Q ss_pred ceeeecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEE
Q 023204 127 EQQFHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREF 164 (286)
Q Consensus 127 ~~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~ 164 (286)
..++++|.- +.+=|.|+|.-..+.+..+++|..+++-
T Consensus 92 ~k~~~~W~~-t~dg~~~RivL~kdtm~~w~NG~~l~Ta 128 (187)
T KOG4352|consen 92 TKQYRLWLY-TDDGQEYRIVLKKDTMSLWVNGDELRTA 128 (187)
T ss_pred hhheeEEEE-ecCCceEEEEEeccceeeEEcCcccccc
Confidence 455666643 3455999999999999999999988763
No 39
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=27.78 E-value=96 Score=23.26 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=30.8
Q ss_pred eeCCCeEEecCCCEEEEEEcCCCcc----eEEEcccEEeEEEEEEEEecCC
Q 023204 32 WGDGRAKMLNNGDLLTLSLDKASGS----GFQSKNEYLYGKIDMQLKLVPG 78 (286)
Q Consensus 32 w~~~nv~~~~~G~~l~L~ld~~sGs----~i~Sk~~~~YG~~eariKlp~g 78 (286)
..++++.+.-+++.|.++..+.... ... .+.+.+|.|+-+++||..
T Consensus 22 ~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~-~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 22 FSEDDLEIEVENNQLTVTGKKADEENEEREYL-HRGIAKRAFERSFNLADH 71 (90)
T ss_pred CCHHHeEEEEECCEEEEEEEEcccccCCCcEE-EEEEeceEEEEEEECCCC
Confidence 3456777766777788887543322 111 235679999999999975
No 40
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=22.91 E-value=2.2e+02 Score=22.57 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=33.6
Q ss_pred eeecCCCCCccee-eecCCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEec
Q 023204 117 NVFTNGKGDREQQ-FHLWFDPAADFHTYSILWNPQRIVFSVDGTPIREFKN 166 (286)
Q Consensus 117 nv~~~g~~~~~~~-~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~ 166 (286)
|.+.+|..+.|++ ...+|.+... -+-.|.=+++....+|||+.+..+..
T Consensus 61 Ns~~~g~Wg~Ee~~~~~pf~~g~~-F~i~I~~~~~~f~I~vng~~~~~F~~ 110 (133)
T PF00337_consen 61 NSRINGKWGQEERESPFPFQPGQP-FEIRIRVEEDGFKIYVNGKHFCSFPH 110 (133)
T ss_dssp EEEETTEE-SEEEESSTSSTTTSE-EEEEEEEESSEEEEEETTEEEEEEE-
T ss_pred eceECCEeccceeeeeeeecCCce-EEEEEEEecCeeEEEECCeEEEEeeC
Confidence 3344455555666 4556664444 46778889999999999999998874
No 41
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.71 E-value=2.2e+02 Score=23.29 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=31.4
Q ss_pred eeCCCeEEecCCCEEEEEEcCCCc----ceEEEcccEEeEEEEEEEEecCC
Q 023204 32 WGDGRAKMLNNGDLLTLSLDKASG----SGFQSKNEYLYGKIDMQLKLVPG 78 (286)
Q Consensus 32 w~~~nv~~~~~G~~l~L~ld~~sG----s~i~Sk~~~~YG~~eariKlp~g 78 (286)
+.++.+.+.-.++.|.++..+... ..-.-.....||.|+-++.||..
T Consensus 61 ~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~ 111 (146)
T COG0071 61 VDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEK 111 (146)
T ss_pred CChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccc
Confidence 445667776677777777765431 22223455679999999999876
No 42
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=22.39 E-value=1.2e+02 Score=23.97 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=23.5
Q ss_pred CCCCcEEEEEEEcCCeEEEEECCeeEEEEe
Q 023204 136 PAADFHTYSILWNPQRIVFSVDGTPIREFK 165 (286)
Q Consensus 136 p~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~ 165 (286)
|.++-|++.+. ..+.++++|||+++-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 35678888888 788899999999986554
No 43
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=21.64 E-value=1.1e+02 Score=22.74 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=19.9
Q ss_pred eEEEEECCeeEEEEeccCCCCCCCCCCCCcEEEEee
Q 023204 151 RIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSL 186 (286)
Q Consensus 151 ~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnl 186 (286)
.+.|||||+++.+...... ..++...|-.-.|.+
T Consensus 44 ~~~W~vdg~~~g~~~~~~~--~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQ--LFWQPDRPGEHTLTV 77 (89)
T ss_pred cEEEEECCEEcccCCCCCe--EEeCCCCCeeEEEEE
Confidence 7899999999965443221 223333455555555
No 44
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=21.45 E-value=1.4e+02 Score=21.20 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=34.7
Q ss_pred eeCCCeEEecCCCEEEEEEcCCCcce---EEEcccEEeEEEEEEEEecCCCCCccEEEEE
Q 023204 32 WGDGRAKMLNNGDLLTLSLDKASGSG---FQSKNEYLYGKIDMQLKLVPGNSAGTVTAYY 88 (286)
Q Consensus 32 w~~~nv~~~~~G~~l~L~ld~~sGs~---i~Sk~~~~YG~~eariKlp~g~s~G~~~AFw 88 (286)
..++++.+.-.++.|.++..+..... -.......+|.|+-+++||..-....+.|-+
T Consensus 18 ~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~ 77 (88)
T cd06464 18 FKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL 77 (88)
T ss_pred CCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEE
Confidence 34566676666677777775432211 2345667789999999999763333344433
No 45
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=20.70 E-value=3.4e+02 Score=21.44 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=25.1
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeeEEEEe
Q 023204 137 AADFHTYSILWNPQRIVFSVDGTPIREFK 165 (286)
Q Consensus 137 ~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~ 165 (286)
...||+-.+.-+...+...||+....+..
T Consensus 52 dg~wh~v~~~r~~~~~~L~Vd~~~~~~~~ 80 (131)
T PF00054_consen 52 DGKWHTVSVSRNGRNGSLSVDGEEVVTGE 80 (131)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CCcceEEEEEEcCcEEEEEECCccceeee
Confidence 46899999999999999999999884443
No 46
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=20.57 E-value=7.7e+02 Score=23.76 Aligned_cols=24 Identities=17% Similarity=0.476 Sum_probs=20.4
Q ss_pred cEEEEEEEcCCe-EEEEECCeeEEE
Q 023204 140 FHTYSILWNPQR-IVFSVDGTPIRE 163 (286)
Q Consensus 140 fHtY~i~Wtp~~-I~fyVDg~~vr~ 163 (286)
-|.|++.-.|+. -...|||+.+.+
T Consensus 170 tHlYTlIlRPd~TYeVkIDn~~~es 194 (406)
T KOG0674|consen 170 THLYTLILRPDATYEVKIDNQQVES 194 (406)
T ss_pred ceeEEEEecCCCeeEEEEccccccc
Confidence 699999999985 678899998755
Done!