Query 023206
Match_columns 286
No_of_seqs 141 out of 277
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 18:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogl_Q JAZ1 incomplete degron 99.5 1.4E-14 4.9E-19 87.5 2.0 21 191-211 1-21 (21)
2 3ogk_Q JAZ1 incomplete degron 99.4 7.9E-14 2.7E-18 85.2 1.7 22 196-217 1-22 (22)
3 2e29_A ATP-dependent RNA helic 69.9 1.4 4.9E-05 34.4 1.1 31 92-123 51-81 (92)
4 2jrb_A ORF 1 protein; RNA bind 30.4 40 0.0014 26.4 3.3 27 92-120 44-70 (88)
5 3hin_A Putative 3-hydroxybutyr 24.2 30 0.001 30.8 1.7 23 196-218 251-273 (275)
6 3soo_A LINE-1 type transposase 22.9 39 0.0013 26.4 2.0 26 93-120 45-70 (88)
7 3i47_A Enoyl COA hydratase/iso 21.8 29 0.00098 30.7 1.1 23 196-218 244-266 (268)
8 1m2d_A [2Fe-2S] ferredoxin; th 19.1 70 0.0024 24.4 2.7 29 92-122 59-88 (110)
9 3hrx_A Probable enoyl-COA hydr 16.9 36 0.0012 29.5 0.6 19 196-214 236-254 (254)
10 4b1z_M Phosphatase and actin r 15.2 41 0.0014 27.1 0.5 23 193-215 4-28 (115)
No 1
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=99.46 E-value=1.4e-14 Score=87.51 Aligned_cols=21 Identities=52% Similarity=0.844 Sum_probs=20.2
Q ss_pred CchhhHHHHhHHHHHhhhhhh.....
Q 023206 191 DGPTSRKASVQRYREKRKDRF..... 211 (286)
Q Consensus 191 DLPIARKaSLqRFLEKRKDRl..... 211 (286)
|||||||+|||||||||||||
T Consensus 1 dlp~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 1 ELPIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred CcchhHHHHHHHHHHHhhccC.....
Confidence 799999999999999999996
No 2
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=99.38 E-value=7.9e-14 Score=85.24 Aligned_cols=22 Identities=50% Similarity=0.744 Sum_probs=21.4
Q ss_pred HHHHhHHHHHhhhhhhhccCCC....
Q 023206 196 RKASVQRYREKRKDRFKNKRKI.... 217 (286)
Q Consensus 196 RKaSLqRFLEKRKDRl~AKaPY.... 217 (286)
||+||||||||||||+.+++||
T Consensus 1 Rk~SLqRFleKRk~R~~~~~PY.... 22 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSKAPYxxxx 26 (26)
T ss_pred CchhHHHHHHHHHHHhhccCCC....
Confidence 7999999999999999999998
No 3
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=69.89 E-value=1.4 Score=34.39 Aligned_cols=31 Identities=10% Similarity=0.242 Sum_probs=27.4
Q ss_pred ccCcceeEEeCcEEEEeCCCCHHHHHHHHHHh
Q 023206 92 EAVGQMTIFYSGKVNVYDDMPSEKAQAILQLA 123 (286)
Q Consensus 92 ~~~~QLTIFY~G~V~VfDdvp~eKA~~Im~lA 123 (286)
..-..||++=+|+-.|| |||.|.+++|+...
T Consensus 51 ~~v~~m~l~~d~~GavF-DvP~e~~~~~~~~~ 81 (92)
T 2e29_A 51 SQITRMCLLKGNMGVCF-DVPTTESERLQAEW 81 (92)
T ss_dssp TTCEEEEECTTSSEEEE-EEEHHHHHHHHHHC
T ss_pred hhhCeEEEecCCCEEEE-ECcHHHHHHHHhhC
Confidence 45578999999999999 89999999999764
No 4
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=30.42 E-value=40 Score=26.39 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=20.2
Q ss_pred ccCcceeEEeCcEEEEeCCCCHHHHHHHH
Q 023206 92 EAVGQMTIFYSGKVNVYDDMPSEKAQAIL 120 (286)
Q Consensus 92 ~~~~QLTIFY~G~V~VfDdvp~eKA~~Im 120 (286)
.-.+-|+++|+|++..|.| .+|.++.+
T Consensus 44 lYPakLsf~~eGeiksF~d--kqkl~efi 70 (88)
T 2jrb_A 44 LYPAKLSITIDGETKVFHD--KTKFTQYL 70 (88)
T ss_dssp ETTTEEEEESSSCEEEESS--HHHHHHHH
T ss_pred ccceeeEEEECCeEeccCC--HHHHHHHH
Confidence 3467899999999999976 45555543
No 5
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}
Probab=24.23 E-value=30 Score=30.83 Aligned_cols=23 Identities=4% Similarity=0.280 Sum_probs=13.7
Q ss_pred HHHHhHHHHHhhhhhhhccCCCC
Q 023206 196 RKASVQRYREKRKDRFKNKRKIA 218 (286)
Q Consensus 196 RKaSLqRFLEKRKDRl~AKaPY~ 218 (286)
.+..++.|||||+-++..+.+|.
T Consensus 251 ~~eg~~AF~ekR~p~f~~~~~~~ 273 (275)
T 3hin_A 251 AKTRIRAFLDHKTAKVREGHHHH 273 (275)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHcCCCCCCCCCCCCC
Confidence 35668999999999998877763
No 6
>3soo_A LINE-1 type transposase domain-containing protein; alpha/beta protein, structural genomics, joint center for ST genomics, JCSG; 2.73A {Homo sapiens} PDB: 2lr6_A
Probab=22.85 E-value=39 Score=26.42 Aligned_cols=26 Identities=8% Similarity=0.259 Sum_probs=20.0
Q ss_pred cCcceeEEeCcEEEEeCCCCHHHHHHHH
Q 023206 93 AVGQMTIFYSGKVNVYDDMPSEKAQAIL 120 (286)
Q Consensus 93 ~~~QLTIFY~G~V~VfDdvp~eKA~~Im 120 (286)
-.+.|+++|+|++..|.| .+|.++.+
T Consensus 45 YPakLsf~~eGeiksF~d--kqkl~eFi 70 (88)
T 3soo_A 45 CEVXLAFXCDGEIXTFSD--LQSLRXFA 70 (88)
T ss_dssp CCCCEEEECSSSEEEESS--HHHHHHHH
T ss_pred ccceEEEEecCceeccCC--HHHccchh
Confidence 468899999999999976 34555543
No 7
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=21.78 E-value=29 Score=30.65 Aligned_cols=23 Identities=4% Similarity=0.160 Sum_probs=14.5
Q ss_pred HHHHhHHHHHhhhhhhhccCCCC
Q 023206 196 RKASVQRYREKRKDRFKNKRKIA 218 (286)
Q Consensus 196 RKaSLqRFLEKRKDRl~AKaPY~ 218 (286)
.+.-+..|+||||-++....+|.
T Consensus 244 ~~eg~~AF~ekR~p~f~~~~~~~ 266 (268)
T 3i47_A 244 GQEGLKAFLNKEIPNWNEGHHHH 266 (268)
T ss_dssp HHHHHHHHHHTCCCTTC------
T ss_pred HHHHHHHHHcCCCCCCCCCCCcC
Confidence 35668999999999998877774
No 8
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=19.10 E-value=70 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.496 Sum_probs=22.1
Q ss_pred ccCcceeEEe-CcEEEEeCCCCHHHHHHHHHH
Q 023206 92 EAVGQMTIFY-SGKVNVYDDMPSEKAQAILQL 122 (286)
Q Consensus 92 ~~~~QLTIFY-~G~V~VfDdvp~eKA~~Im~l 122 (286)
-..+.+-++| +| .+|-+|++|++.+|+.-
T Consensus 59 C~~gP~v~V~P~~--~~y~~vt~e~v~~il~~ 88 (110)
T 1m2d_A 59 SMMGPVVVVYPDG--VWYGQVKPEDVDEIVEK 88 (110)
T ss_dssp GGGCSCEEEETTT--EEECSCCGGGHHHHHHH
T ss_pred cCCCCEEEEEeCC--EEEecCCHHHHHHHHHH
Confidence 3445666677 66 57889999999999974
No 9
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=16.92 E-value=36 Score=29.47 Aligned_cols=19 Identities=37% Similarity=0.751 Sum_probs=14.0
Q ss_pred HHHHhHHHHHhhhhhhhcc
Q 023206 196 RKASVQRYREKRKDRFKNK 214 (286)
Q Consensus 196 RKaSLqRFLEKRKDRl~AK 214 (286)
.+.-++-||||||=+++.|
T Consensus 236 ~~Eg~~AF~eKR~P~f~Gr 254 (254)
T 3hrx_A 236 HEEGVRAFREKRPPRFQGR 254 (254)
T ss_dssp HHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHhCCCCCCCCCC
Confidence 3556888999998776543
No 10
>4b1z_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP; 3.30A {Mus musculus}
Probab=15.23 E-value=41 Score=27.05 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=16.7
Q ss_pred hhhHHHHhHHHHHhhhhh--hhccC
Q 023206 193 PTSRKASVQRYREKRKDR--FKNKR 215 (286)
Q Consensus 193 PIARKaSLqRFLEKRKDR--l~AKa 215 (286)
-++||.||+..|+.|.++ +..+.
T Consensus 4 kv~RKdsL~~kL~~Rp~~~eLv~~~ 28 (115)
T 4b1z_M 4 KVCRKDSLAIKLSNRPSKRELEEKN 28 (115)
T ss_dssp --CHHHHHHHHHTTCCCHHHHHHTT
T ss_pred HhHhHHHHHHHHhcCCCHHHHHhcC
Confidence 368999999999999764 44443
Done!