Query 023206
Match_columns 286
No_of_seqs 141 out of 277
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 18:09:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023206.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023206hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e29a1 d.58.7.5 (A:8-92) ATP- 50.6 2.6 0.00019 31.1 1.2 31 92-123 44-74 (85)
2 d1aisa2 d.129.1.1 (A:93-181) T 22.6 26 0.0019 24.8 2.8 31 92-122 51-81 (89)
3 d1dfna_ g.9.1.1 (A:) Defensin 21.2 28 0.002 20.7 2.2 15 94-108 14-28 (30)
4 d1uiya_ c.14.1.3 (A:) Enoyl-Co 19.2 15 0.0011 29.2 0.8 15 196-210 238-252 (253)
5 d1qnaa1 d.129.1.1 (A:17-115) T 17.6 46 0.0033 24.0 3.2 31 92-122 50-80 (99)
6 d2fw2a1 c.14.1.3 (A:3-260) Chr 17.3 20 0.0014 29.0 1.1 15 196-210 243-257 (258)
7 d1aisa1 d.129.1.1 (A:1-92) TAT 16.6 48 0.0035 23.4 3.1 31 92-122 52-82 (92)
8 d1hzda_ c.14.1.3 (A:) AUH prot 16.2 16 0.0011 29.7 0.2 20 195-214 247-266 (266)
9 d2epqa1 g.37.1.1 (A:380-411) P 16.1 14 0.00099 22.5 -0.1 10 201-212 11-20 (32)
10 d1nzya_ c.14.1.3 (A:) 4-Chloro 16.0 25 0.0018 28.4 1.5 16 197-212 246-261 (269)
No 1
>d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.58 E-value=2.6 Score=31.09 Aligned_cols=31 Identities=10% Similarity=0.242 Sum_probs=27.2
Q ss_pred ccCcceeEEeCcEEEEeCCCCHHHHHHHHHHh
Q 023206 92 EAVGQMTIFYSGKVNVYDDMPSEKAQAILQLA 123 (286)
Q Consensus 92 ~~~~QLTIFY~G~V~VfDdvp~eKA~~Im~lA 123 (286)
..-.-||++=+|+=+|| |||.|.+++|..--
T Consensus 44 ~~I~~M~l~kd~~GavF-DVpse~~~~i~~~W 74 (85)
T d2e29a1 44 SQITRMCLLKGNMGVCF-DVPTTESERLQAEW 74 (85)
T ss_dssp TTCEEEEECTTSSEEEE-EEEHHHHHHHHHHC
T ss_pred HhhheeEEecCCCEEEE-eccHHHHHHHHHHh
Confidence 45567999999999999 89999999998765
No 2
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=22.55 E-value=26 Score=24.82 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=24.6
Q ss_pred ccCcceeEEeCcEEEEeCCCCHHHHHHHHHH
Q 023206 92 EAVGQMTIFYSGKVNVYDDMPSEKAQAILQL 122 (286)
Q Consensus 92 ~~~~QLTIFY~G~V~VfDdvp~eKA~~Im~l 122 (286)
.....+.||..|+|.+---=+.+.|++.+..
T Consensus 51 ~p~~t~lIF~SGKivitGaks~~~~~~a~~~ 81 (89)
T d1aisa2 51 EPKSVILLFSSGKIVCSGAKSEADAWEAVRK 81 (89)
T ss_dssp TTTEEEEECTTSEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEEEcCCEEEEEccCCHHHHHHHHHH
Confidence 4457899999999999976788888776543
No 3
>d1dfna_ g.9.1.1 (A:) Defensin HNP-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.22 E-value=28 Score=20.71 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=12.0
Q ss_pred CcceeEEeCcEEEEe
Q 023206 94 VGQMTIFYSGKVNVY 108 (286)
Q Consensus 94 ~~QLTIFY~G~V~Vf 108 (286)
..-=|-||.|+|-.|
T Consensus 14 rrygtc~y~gr~waf 28 (30)
T d1dfna_ 14 RRYGTCIYQGRLWAF 28 (30)
T ss_dssp CEEEEEEETTEEEEE
T ss_pred cceeeEEEeceEeee
Confidence 344589999999887
No 4
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}
Probab=19.17 E-value=15 Score=29.17 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=11.4
Q ss_pred HHHHhHHHHHhhhhh
Q 023206 196 RKASVQRYREKRKDR 210 (286)
Q Consensus 196 RKaSLqRFLEKRKDR 210 (286)
.|..++-||||||=+
T Consensus 238 ~~egi~af~eKR~P~ 252 (253)
T d1uiya_ 238 LAEGIRAFFEKRPPR 252 (253)
T ss_dssp HHHHHHHHHTTSCCC
T ss_pred HHHHHHHHhCCCCCC
Confidence 456788999999743
No 5
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.55 E-value=46 Score=23.96 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=24.0
Q ss_pred ccCcceeEEeCcEEEEeCCCCHHHHHHHHHH
Q 023206 92 EAVGQMTIFYSGKVNVYDDMPSEKAQAILQL 122 (286)
Q Consensus 92 ~~~~QLTIFY~G~V~VfDdvp~eKA~~Im~l 122 (286)
.....+.||..|+|.+----+.++|+..+.-
T Consensus 50 ~P~~t~lIF~SGKivitGaks~~~~~~a~~~ 80 (99)
T d1qnaa1 50 EPKTTALIFASGKMVCTGAKSEDFSKMAARK 80 (99)
T ss_dssp TTTEEEEEETTSEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEEEcCCEEEEeccCCHHHHHHHHHH
Confidence 3468899999999999866778877765543
No 6
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.32 E-value=20 Score=29.04 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=11.7
Q ss_pred HHHHhHHHHHhhhhh
Q 023206 196 RKASVQRYREKRKDR 210 (286)
Q Consensus 196 RKaSLqRFLEKRKDR 210 (286)
.+..+..||||||-.
T Consensus 243 ~~Egi~af~EKR~p~ 257 (258)
T d2fw2a1 243 GIESMLKYVENKIDE 257 (258)
T ss_dssp HHHHHHHHHHSSCCC
T ss_pred HHHHHHHHhCCCCCC
Confidence 466788899999854
No 7
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=16.59 E-value=48 Score=23.44 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=24.2
Q ss_pred ccCcceeEEeCcEEEEeCCCCHHHHHHHHHH
Q 023206 92 EAVGQMTIFYSGKVNVYDDMPSEKAQAILQL 122 (286)
Q Consensus 92 ~~~~QLTIFY~G~V~VfDdvp~eKA~~Im~l 122 (286)
.....++||..|++.+.--=+.++++..+..
T Consensus 52 ~p~~~~lIF~sGkivitGakS~~~~~~a~~~ 82 (92)
T d1aisa1 52 DPKVALLIFSSGKLVVTGAKSVQDIERAVAK 82 (92)
T ss_dssp SSCCEEEECTTSEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEEECCCEEEEEccCCHHHHHHHHHH
Confidence 3457899999999999866678888766543
No 8
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.19 E-value=16 Score=29.73 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=14.8
Q ss_pred hHHHHhHHHHHhhhhhhhcc
Q 023206 195 SRKASVQRYREKRKDRFKNK 214 (286)
Q Consensus 195 ARKaSLqRFLEKRKDRl~AK 214 (286)
..+..++-||||||=+++.|
T Consensus 247 d~~Eg~~AF~eKR~P~f~Gk 266 (266)
T d1hzda_ 247 DRLEGLLAFKEKRPPRYKGE 266 (266)
T ss_dssp HHHHHHHHHTTTSCCCCCCC
T ss_pred HHHHHHHHHhCCCCCCCCCC
Confidence 35677899999998666543
No 9
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.13 E-value=14 Score=22.52 Aligned_cols=10 Identities=60% Similarity=1.013 Sum_probs=8.1
Q ss_pred HHHHHhhhhhhh
Q 023206 201 QRYREKRKDRFK 212 (286)
Q Consensus 201 qRFLEKRKDRl~ 212 (286)
||| |||||++
T Consensus 11 qrf--krkdrms 20 (32)
T d2epqa1 11 LRF--KRKDRMS 20 (32)
T ss_dssp EEC--SCHHHHH
T ss_pred HHh--hccccce
Confidence 566 9999986
No 10
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}
Probab=15.99 E-value=25 Score=28.44 Aligned_cols=16 Identities=6% Similarity=0.187 Sum_probs=12.3
Q ss_pred HHHhHHHHHhhhhhhh
Q 023206 197 KASVQRYREKRKDRFK 212 (286)
Q Consensus 197 KaSLqRFLEKRKDRl~ 212 (286)
+..+.+||||||-+..
T Consensus 246 ~e~v~aflekrkp~~~ 261 (269)
T d1nzya_ 246 MPCLTRFLDGHRADRP 261 (269)
T ss_dssp HHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHCCCCCCcC
Confidence 4567899999987553
Done!