BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023207
(285 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224133800|ref|XP_002321664.1| predicted protein [Populus trichocarpa]
gi|222868660|gb|EEF05791.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/275 (85%), Positives = 253/275 (92%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAGSK APKN E+KDDT +SREEK ILMRALSS PF NY +WWSLADSKYAGTALLV
Sbjct: 89 MPAAGSKGAPKNSGEIKDDTNSSREEKKILMRALSSSPFGNYNVWWSLADSKYAGTALLV 148
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KKCFQP KVSF+L++TA K+EPDGRVILAEF+TF LLNTYAPNNGWKEEE SFQRRRKWD
Sbjct: 149 KKCFQPVKVSFALDQTASKHEPDGRVILAEFKTFRLLNTYAPNNGWKEEEKSFQRRRKWD 208
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KR+ E V+Q S KPLIWCGDLNVSHEEIDVSHPEFF+AAK+NGYVPPNKED GQPGFT++
Sbjct: 209 KRMLEVVVQLSDKPLIWCGDLNVSHEEIDVSHPEFFSAAKVNGYVPPNKEDCGQPGFTLS 268
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ERKRFGAILKEG+LIDAYRFLHKE+DM+ GFSWSGNPIGKYRGKRMRID+FIVSE+LKDR
Sbjct: 269 ERKRFGAILKEGKLIDAYRFLHKERDMERGFSWSGNPIGKYRGKRMRIDFFIVSEKLKDR 328
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEASSDS 275
II CEM GHGIELEGFYGSDHCPVSLELS AS DS
Sbjct: 329 IIQCEMHGHGIELEGFYGSDHCPVSLELSPASPDS 363
>gi|225456791|ref|XP_002277389.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Vitis
vinifera]
gi|297733638|emb|CBI14885.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/277 (81%), Positives = 249/277 (89%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAGSK APKNH ELKDDT +SREEK ILM ALS PPF NY++WWSLADSKYAGTAL V
Sbjct: 80 MPAAGSKGAPKNHGELKDDTSSSREEKKILMHALSRPPFGNYRVWWSLADSKYAGTALFV 139
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KKCFQPKKVSFS+++ A K+EP+GRVILAEFE+F LLNTY PNNGWK+EE SFQRRRKWD
Sbjct: 140 KKCFQPKKVSFSIDQKASKHEPEGRVILAEFESFRLLNTYVPNNGWKDEETSFQRRRKWD 199
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHPEFF+AAK NGYVPPNKED GQPGFT+A
Sbjct: 200 KRMLEFVVQSSDKPLIWCGDLNVSHEEIDVSHPEFFSAAKHNGYVPPNKEDCGQPGFTLA 259
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ER+RFG ILKEG+L+DAYR LHKEKDM+ GFSWSGNPIGKYRGKRMRIDYFIV E LKDR
Sbjct: 260 ERRRFGGILKEGKLVDAYRLLHKEKDMEGGFSWSGNPIGKYRGKRMRIDYFIVPEALKDR 319
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 277
I+ACE+ G GIEL+GFYGSDHCPVSLELSE SS S +
Sbjct: 320 IVACEIHGQGIELKGFYGSDHCPVSLELSETSSGSNQ 356
>gi|297816036|ref|XP_002875901.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
gi|297321739|gb|EFH52160.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 223/282 (79%), Positives = 251/282 (89%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAG K PKN +EL DDTK REEK IL RALSSPPF NY++WWSLADSKYAGTALLV
Sbjct: 403 MPAAGGKGKPKNPEELSDDTKVLREEKQILTRALSSPPFGNYRVWWSLADSKYAGTALLV 462
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KKCF+PKKV F+L+K A K+EPDGRVILAEFETF LLNTY+PNNGWKEEENSFQRRRKWD
Sbjct: 463 KKCFKPKKVYFNLDKLASKHEPDGRVILAEFETFRLLNTYSPNNGWKEEENSFQRRRKWD 522
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA AKLNGYVPPNKED GQPGFT +
Sbjct: 523 KRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFTPS 582
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ER+RFG +KEG L+DAYR+LHKE+DM+ GFSWSGNPIGKYRGKRMRIDYF+VSE+LKDR
Sbjct: 583 ERRRFGETMKEGMLVDAYRYLHKEQDMESGFSWSGNPIGKYRGKRMRIDYFLVSEQLKDR 642
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKKN 282
I++C+M G GIELEGFYGSDHCPV+LELS+ SS++E+ + N
Sbjct: 643 IVSCKMHGRGIELEGFYGSDHCPVTLELSKPSSETEQNQVSN 684
>gi|4678346|emb|CAB41156.1| putative protein [Arabidopsis thaliana]
Length = 686
Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust.
Identities = 221/282 (78%), Positives = 251/282 (89%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAG K PKNH+EL DDTK REEK IL RALSSPPF NY +WWSLADSKYAGTALLV
Sbjct: 405 MPAAGGKGKPKNHEELSDDTKVLREEKQILTRALSSPPFGNYGVWWSLADSKYAGTALLV 464
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KKCF+P+KV F+L+K A K+EPDGRVILAEFETF LLNTY+PNNGWK+EEN+FQRRRKWD
Sbjct: 465 KKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLLNTYSPNNGWKDEENAFQRRRKWD 524
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA AKLNGYVPPNKED GQPGFT +
Sbjct: 525 KRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFTPS 584
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ER RFGA +KEGRL+DAYR+LHKE++M+ GFSWSGNPIGKYRGKRMRIDYF+VSE+LKDR
Sbjct: 585 ERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNPIGKYRGKRMRIDYFLVSEQLKDR 644
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKKN 282
I++C+M G GIELEGF+GSDHCPV+LELS+ SS+ E+ + N
Sbjct: 645 IVSCKMHGRGIELEGFHGSDHCPVTLELSKPSSEMEQNQVSN 686
>gi|42565714|ref|NP_566904.2| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
gi|53828525|gb|AAU94372.1| At3g48425 [Arabidopsis thaliana]
gi|55733769|gb|AAV59281.1| At3g48425 [Arabidopsis thaliana]
gi|332644894|gb|AEE78415.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
Length = 364
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 221/282 (78%), Positives = 251/282 (89%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAG K PKNH+EL DDTK REEK IL RALSSPPF NY +WWSLADSKYAGTALLV
Sbjct: 83 MPAAGGKGKPKNHEELSDDTKVLREEKQILTRALSSPPFGNYGVWWSLADSKYAGTALLV 142
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KKCF+P+KV F+L+K A K+EPDGRVILAEFETF LLNTY+PNNGWK+EEN+FQRRRKWD
Sbjct: 143 KKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLLNTYSPNNGWKDEENAFQRRRKWD 202
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA AKLNGYVPPNKED GQPGFT +
Sbjct: 203 KRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFTPS 262
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ER RFGA +KEGRL+DAYR+LHKE++M+ GFSWSGNPIGKYRGKRMRIDYF+VSE+LKDR
Sbjct: 263 ERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNPIGKYRGKRMRIDYFLVSEQLKDR 322
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKKN 282
I++C+M G GIELEGF+GSDHCPV+LELS+ SS+ E+ + N
Sbjct: 323 IVSCKMHGRGIELEGFHGSDHCPVTLELSKPSSEMEQNQVSN 364
>gi|449487730|ref|XP_004157772.1| PREDICTED: LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site)
lyase-like [Cucumis sativus]
Length = 361
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 220/273 (80%), Positives = 246/273 (90%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
+PAAGSK A KN ELKDDT SREEK +LMRALSSPPF NY++WWSL+DSKYAGTAL +
Sbjct: 82 IPAAGSKGASKNQGELKDDTNTSREEKQMLMRALSSPPFANYRVWWSLSDSKYAGTALFI 141
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KKCFQPKKV F+L++ A K+E DGRVILAEFETF LLNTY+PNNGWKEEE SF+RRRKWD
Sbjct: 142 KKCFQPKKVXFNLDRIASKHEVDGRVILAEFETFRLLNTYSPNNGWKEEEKSFKRRRKWD 201
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHP+FF+AAKLNGY+PPNKED GQPGFT+A
Sbjct: 202 KRMLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAAKLNGYIPPNKEDCGQPGFTLA 261
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ER RF AILKEG+LIDA+RFLHKEKDM+ GFSWSG+PIGKYRGKRMRIDYF+VSE L R
Sbjct: 262 ERNRFNAILKEGKLIDAHRFLHKEKDMERGFSWSGHPIGKYRGKRMRIDYFLVSESLVGR 321
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEASS 273
I++CEM G GIEL+GFYGSDHCPVSLELSEASS
Sbjct: 322 IVSCEMHGQGIELKGFYGSDHCPVSLELSEASS 354
>gi|449469598|ref|XP_004152506.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cucumis
sativus]
Length = 361
Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust.
Identities = 220/273 (80%), Positives = 246/273 (90%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
+PAAGSK A KN ELKDDT SREEK +LMRALSSPPF NY++WWSL+DSKYAGTAL +
Sbjct: 82 IPAAGSKGASKNQGELKDDTNTSREEKQMLMRALSSPPFANYRVWWSLSDSKYAGTALFI 141
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KKCFQPKKV F+L++ A K+E DGRVILAEFETF LLNTY+PNNGWKEEE SF+RRRKWD
Sbjct: 142 KKCFQPKKVFFNLDRIASKHEVDGRVILAEFETFRLLNTYSPNNGWKEEEKSFKRRRKWD 201
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHP+FF+AAKLNGY+PPNKED GQPGFT+A
Sbjct: 202 KRMLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAAKLNGYIPPNKEDCGQPGFTLA 261
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ER RF AILKEG+LIDA+RFLHKEKDM+ GFSWSG+PIGKYRGKRMRIDYF+VSE L R
Sbjct: 262 ERNRFNAILKEGKLIDAHRFLHKEKDMERGFSWSGHPIGKYRGKRMRIDYFLVSESLVGR 321
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEASS 273
I++CEM G GIEL+GFYGSDHCPVSLELSEASS
Sbjct: 322 IVSCEMHGQGIELKGFYGSDHCPVSLELSEASS 354
>gi|356508768|ref|XP_003523126.1| PREDICTED: exodeoxyribonuclease-like [Glycine max]
Length = 355
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 215/273 (78%), Positives = 244/273 (89%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAG+K A K E+KDDT A+REEK IL RALS+PPF NY +WWSLADSKYAGTALLV
Sbjct: 76 MPAAGAKGASKIQGEIKDDTSAAREEKKILTRALSAPPFGNYHVWWSLADSKYAGTALLV 135
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KKCF+PK V F+L+K A K+EPDGRVIL EFET LLNTY PNNGWKEE NSFQRRRKWD
Sbjct: 136 KKCFKPKSVVFNLDKLASKHEPDGRVILVEFETLRLLNTYVPNNGWKEEANSFQRRRKWD 195
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KRI EFV Q S KPLIWCGDLNVSHEEIDVSHP+FF+ AKLNGY+PPNKED GQPGFT++
Sbjct: 196 KRILEFVTQSSDKPLIWCGDLNVSHEEIDVSHPDFFSVAKLNGYIPPNKEDCGQPGFTLS 255
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ERKRFG IL+EG+L+DAYRFLH++KDM+ GFSWSGNP+G+YRGKRMRIDYF+VSE+LK+R
Sbjct: 256 ERKRFGTILREGKLVDAYRFLHEDKDMERGFSWSGNPVGRYRGKRMRIDYFLVSEKLKER 315
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEASS 273
I ACEM+GHGIELEGFYGSDHCPV+LELS +S+
Sbjct: 316 IAACEMRGHGIELEGFYGSDHCPVTLELSPSSN 348
>gi|115488172|ref|NP_001066573.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|77554323|gb|ABA97119.1| exodeoxyribonuclease III family protein, expressed [Oryza sativa
Japonica Group]
gi|113649080|dbj|BAF29592.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|215687325|dbj|BAG91875.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222616909|gb|EEE53041.1| hypothetical protein OsJ_35763 [Oryza sativa Japonica Group]
Length = 379
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 211/270 (78%), Positives = 252/270 (93%), Gaps = 1/270 (0%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAGSK APKN +LKDDT +SR+EK +++RALSSPPFK+Y++WWSL+DSKYAGTA+++
Sbjct: 100 MPAAGSKGAPKNPGQLKDDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMII 159
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KK F+PKKVSF+L++T+ K+EPDGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWD
Sbjct: 160 KKKFEPKKVSFNLDRTSSKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWD 219
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KR+ EFV Q KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKED GQPGFT++
Sbjct: 220 KRMLEFVQQVD-KPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKEDCGQPGFTLS 278
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ER+RFG IL +G+L+DAYR+LHKEKDMDCGFSWSG+PIGKYRGKRMRIDYF+VSE+LKD+
Sbjct: 279 ERRRFGNILSQGKLVDAYRYLHKEKDMDCGFSWSGHPIGKYRGKRMRIDYFLVSEKLKDQ 338
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSE 270
I++C++ G GIELEGFYGSDHCPVSLELSE
Sbjct: 339 IVSCDIHGRGIELEGFYGSDHCPVSLELSE 368
>gi|357160291|ref|XP_003578718.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Brachypodium distachyon]
Length = 369
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 213/275 (77%), Positives = 249/275 (90%), Gaps = 1/275 (0%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAGSK APKN ELKDDT +SREEK I++RALSS PFK+Y++WWSL+DSKYAGTA+ V
Sbjct: 89 MPAAGSKGAPKNPSELKDDTSSSREEKQIVLRALSSSPFKDYRVWWSLSDSKYAGTAVFV 148
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KK F+PKKVSF+L++T+ K+E DGRVI+ EFE+ LLNTYAPNNGWKEEENSFQRRRKWD
Sbjct: 149 KKMFEPKKVSFNLDRTSSKHESDGRVIIVEFESLLLLNTYAPNNGWKEEENSFQRRRKWD 208
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KR+ EFV Q KP IWCGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKED GQPGFT+A
Sbjct: 209 KRMFEFVQQVD-KPFIWCGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKEDCGQPGFTLA 267
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ER+RFG IL +G+L+DAYR LHKEKDM+CGFSWSGNPIGKYRGKRMRIDYFIVSE LKDR
Sbjct: 268 ERQRFGNILSQGKLVDAYRHLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFIVSERLKDR 327
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEASSDS 275
+++CE+ GHGIELEGFYGSDHCPVSLELS+ ++++
Sbjct: 328 LVSCEIHGHGIELEGFYGSDHCPVSLELSKDAAEA 362
>gi|242078097|ref|XP_002443817.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
gi|241940167|gb|EES13312.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
Length = 369
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 210/281 (74%), Positives = 251/281 (89%), Gaps = 1/281 (0%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAGSK APKN ELKDDT +SR+EK +++RALS+ PFK+Y++WWSL+DSKYAGTA+ +
Sbjct: 89 MPAAGSKGAPKNPSELKDDTSSSRDEKQVVLRALSTSPFKDYRVWWSLSDSKYAGTAMFI 148
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KK F+PKKVSF+L++T+ K+E DGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWD
Sbjct: 149 KKKFEPKKVSFNLDRTSSKHETDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWD 208
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KR+ EFV Q KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPN+ED GQPGFT A
Sbjct: 209 KRMLEFV-QHVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNQEDCGQPGFTPA 267
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ER+RFG IL +G+L+DAYR LHKEKDMD GFSWSG+PIGKYRGKRMRIDYF+VSE+LKDR
Sbjct: 268 ERRRFGNILFQGKLVDAYRHLHKEKDMDGGFSWSGHPIGKYRGKRMRIDYFLVSEQLKDR 327
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKK 281
I++CEM G GIEL+GFYGSDHCPV+LELS+A +++ + K
Sbjct: 328 IVSCEMHGRGIELDGFYGSDHCPVTLELSKAVAEAAPEQPK 368
>gi|358348989|ref|XP_003638523.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355504458|gb|AES85661.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 367
Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust.
Identities = 209/264 (79%), Positives = 235/264 (89%)
Query: 10 PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV 69
PKN E+KDDT A+REEK ILMRALS+PPF NY +WWSLA+SKYAGTAL VKKCF+PK V
Sbjct: 97 PKNQAEVKDDTNAAREEKRILMRALSNPPFGNYHVWWSLAESKYAGTALFVKKCFKPKSV 156
Query: 70 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 129
F+L+K A K+EPDGRVIL EFET LLNTY PNNGWKEE NSFQRRRKWDKRI EFV Q
Sbjct: 157 VFNLDKIASKHEPDGRVILVEFETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVNQ 216
Query: 130 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 189
S KPLIWCGDLNVSHEEIDVS PEFF+ AKLNGYVPPNKED+GQPGFT+AER RFG IL
Sbjct: 217 NSDKPLIWCGDLNVSHEEIDVSQPEFFSTAKLNGYVPPNKEDYGQPGFTLAERARFGTIL 276
Query: 190 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 249
+EG+L+DAYRFLHK+KDM+ GFSWSGNPIG+YRGKRMRIDYFIVSE++K++I ACEM G
Sbjct: 277 REGKLVDAYRFLHKDKDMEQGFSWSGNPIGRYRGKRMRIDYFIVSEKIKEKIAACEMHGK 336
Query: 250 GIELEGFYGSDHCPVSLELSEASS 273
GIEL+GFYGSDHCPV+LELS +S+
Sbjct: 337 GIELQGFYGSDHCPVTLELSPSSN 360
>gi|226531290|ref|NP_001144669.1| uncharacterized protein LOC100277695 [Zea mays]
gi|195645474|gb|ACG42205.1| hypothetical protein [Zea mays]
gi|238007716|gb|ACR34893.1| unknown [Zea mays]
gi|413917521|gb|AFW57453.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 373
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/274 (76%), Positives = 247/274 (90%), Gaps = 1/274 (0%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAGSK APKN ELKDDT SR+EK +++RALS+ PFK+Y++WWSL+DSKYAGTA+ +
Sbjct: 91 MPAAGSKGAPKNPSELKDDTSLSRDEKQVVLRALSASPFKDYRVWWSLSDSKYAGTAMFI 150
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KK F+PKKVSF+L++T+ K+E DGRVI+AEFE+F LLNTY+PNNGWKEEEN+FQRRRKWD
Sbjct: 151 KKKFEPKKVSFNLDRTSSKHEADGRVIIAEFESFLLLNTYSPNNGWKEEENAFQRRRKWD 210
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KR+ EFV Q KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPNKED GQPGFT A
Sbjct: 211 KRMLEFV-QHVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNKEDCGQPGFTPA 269
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ER+RFG IL +G+L+DAYR LHKEKD+D GFSWSG+PIGKYRGKRMRIDYF+VSE+LKDR
Sbjct: 270 ERRRFGNILFQGKLVDAYRHLHKEKDIDGGFSWSGHPIGKYRGKRMRIDYFLVSEQLKDR 329
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEASSD 274
I++CEM G GIEL+GFYGSDHCPVSLELSEA ++
Sbjct: 330 IVSCEMHGRGIELDGFYGSDHCPVSLELSEAVAE 363
>gi|326511341|dbj|BAJ87684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/273 (75%), Positives = 244/273 (89%), Gaps = 5/273 (1%)
Query: 7 KDAPKNHQ----ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK 62
+ PK HQ ELKDDT +SREEK I++RALSS PFK+Y++WWSL+DSKYAGTA+ +KK
Sbjct: 28 QQVPKGHQKNPSELKDDTTSSREEKQIVLRALSSSPFKDYRVWWSLSDSKYAGTAVFMKK 87
Query: 63 CFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 122
F+PKKVSF+L++T+ K++ DGRVI+ EFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR
Sbjct: 88 KFEPKKVSFNLDRTSSKHDADGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKR 147
Query: 123 IQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 182
+ EFV Q KPLIWCGDLNVSH EIDVSHP+FF+ AKLNGY+PPNKED GQPGFT+AER
Sbjct: 148 MLEFVQQVD-KPLIWCGDLNVSHGEIDVSHPDFFSDAKLNGYIPPNKEDCGQPGFTLAER 206
Query: 183 KRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRII 242
+RFG IL +G+L+DAYR+LHKEKDM+CGFSWSGNPIGKYRGKRMRIDYF+VSE LKDRI+
Sbjct: 207 QRFGNILSQGKLVDAYRYLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFVVSEGLKDRIV 266
Query: 243 ACEMQGHGIELEGFYGSDHCPVSLELSEASSDS 275
+CEM GHGIELEGFYGSDHCPVSLELS+ ++++
Sbjct: 267 SCEMHGHGIELEGFYGSDHCPVSLELSKEAAEA 299
>gi|413917522|gb|AFW57454.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 383
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/284 (73%), Positives = 247/284 (86%), Gaps = 11/284 (3%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAGSK APKN ELKDDT SR+EK +++RALS+ PFK+Y++WWSL+DSKYAGTA+ +
Sbjct: 91 MPAAGSKGAPKNPSELKDDTSLSRDEKQVVLRALSASPFKDYRVWWSLSDSKYAGTAMFI 150
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KK F+PKKVSF+L++T+ K+E DGRVI+AEFE+F LLNTY+PNNGWKEEEN+FQRRRKWD
Sbjct: 151 KKKFEPKKVSFNLDRTSSKHEADGRVIIAEFESFLLLNTYSPNNGWKEEENAFQRRRKWD 210
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KR+ EFV Q KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPNKED GQPGFT A
Sbjct: 211 KRMLEFV-QHVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNKEDCGQPGFTPA 269
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG----------KYRGKRMRIDY 230
ER+RFG IL +G+L+DAYR LHKEKD+D GFSWSG+PIG +YRGKRMRIDY
Sbjct: 270 ERRRFGNILFQGKLVDAYRHLHKEKDIDGGFSWSGHPIGNEINFSAYASRYRGKRMRIDY 329
Query: 231 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSD 274
F+VSE+LKDRI++CEM G GIEL+GFYGSDHCPVSLELSEA ++
Sbjct: 330 FLVSEQLKDRIVSCEMHGRGIELDGFYGSDHCPVSLELSEAVAE 373
>gi|46200513|gb|AAL73527.2|AF466200_6 putative AP endonuclease [Sorghum bicolor]
Length = 348
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/263 (71%), Positives = 228/263 (86%), Gaps = 11/263 (4%)
Query: 29 ILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL 88
+++RALS+ PFK+Y++WWSL+DSKYAGTA+ +KK F+PKKVSF+L++T+ K+E DGRVI+
Sbjct: 86 VVLRALSTSPFKDYRVWWSLSDSKYAGTAMFIKKKFEPKKVSFNLDRTSSKHETDGRVII 145
Query: 89 AEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEI 148
AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q KPLIWCGDLNVSHEEI
Sbjct: 146 AEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFV-QHVDKPLIWCGDLNVSHEEI 204
Query: 149 DVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD 208
DVSHP+FF++AKLNGY PPN+ED GQPGFT AER+RFG IL +G+L+DAYR LHKEKDMD
Sbjct: 205 DVSHPDFFSSAKLNGYTPPNQEDCGQPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDMD 264
Query: 209 CGFSWSGNPIG----------KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 258
GFSWSG+PIG +YRGKRMRIDYF+VSE+LKDRI++CEM G GIEL+GFYG
Sbjct: 265 GGFSWSGHPIGNEINFSAYSSRYRGKRMRIDYFLVSEQLKDRIVSCEMHGRGIELDGFYG 324
Query: 259 SDHCPVSLELSEASSDSEKREKK 281
SDHCPV+LELS+A +++ + K
Sbjct: 325 SDHCPVTLELSKAVAEAAPEQPK 347
>gi|255540403|ref|XP_002511266.1| ap endonuclease, putative [Ricinus communis]
gi|223550381|gb|EEF51868.1| ap endonuclease, putative [Ricinus communis]
Length = 326
Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/275 (70%), Positives = 213/275 (77%), Gaps = 33/275 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAGSK APKN ELKDDT +SREEK ILMRALSSPPF +Y+IWWSLADSKYAGTALLV
Sbjct: 82 MPAAGSKGAPKNPGELKDDTSSSREEKQILMRALSSPPFGSYKIWWSLADSKYAGTALLV 141
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KK F KVSFSL+K+ +SF R +K D
Sbjct: 142 KKRFHNIKVSFSLDKSG--------------------------------GDSF-REKKMD 168
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
KR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHPEFF AAK NGYVPPNKED GQPGFT+
Sbjct: 169 KRMLEFVVQLSDKPLIWCGDLNVSHEEIDVSHPEFFIAAKQNGYVPPNKEDCGQPGFTLN 228
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ERKRFG+IL+EG+LIDAYRFLHKEKDM+ GFSWSGNPIGKYRGKRMRIDYFIVSE+LK R
Sbjct: 229 ERKRFGSILREGKLIDAYRFLHKEKDMERGFSWSGNPIGKYRGKRMRIDYFIVSEKLKGR 288
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEASSDS 275
II+CEM G GIEL+GFYGSDHCPVSLEL + DS
Sbjct: 289 IISCEMHGQGIELQGFYGSDHCPVSLELVPTTCDS 323
>gi|168031629|ref|XP_001768323.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680501|gb|EDQ66937.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 369
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 214/279 (76%), Gaps = 1/279 (0%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
+P+AG K P+NH ELKDDT ++RE+K I+MRALS P +Y +WWSL+DSKY GTALLV
Sbjct: 80 IPSAGRKGEPRNHGELKDDTNSAREDKQIMMRALSVSPLSDYGVWWSLSDSKYGGTALLV 139
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
K P + +SL+ LK+E DGRVILAEF +F LLNTY PNN WK+++N F RRR WD
Sbjct: 140 KHSCSPISILYSLDD-KLKHEADGRVILAEFHSFRLLNTYVPNNSWKDDDNGFARRRAWD 198
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
R+ EF+ + KPLIWCGDLNVS+E IDVSHP+FF+ AKL GY PPN ED GQPGFT+
Sbjct: 199 ARMIEFLKRPHKKPLIWCGDLNVSNEVIDVSHPDFFSNAKLQGYTPPNAEDIGQPGFTLG 258
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ER+RF L +G L+D YR LHK++D D GF+WSGNP+GKYRGKRMRIDYF++S +L DR
Sbjct: 259 ERQRFAECLSKGDLVDTYRHLHKQQDFDAGFTWSGNPVGKYRGKRMRIDYFLLSRKLLDR 318
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKRE 279
+++ ++ G GIE EGF GSDHCP+++E+ A+ + K E
Sbjct: 319 LVSSDIHGQGIEQEGFCGSDHCPITMEIRTATKEIAKVE 357
>gi|302823174|ref|XP_002993241.1| hypothetical protein SELMODRAFT_187330 [Selaginella moellendorffii]
gi|300138911|gb|EFJ05662.1| hypothetical protein SELMODRAFT_187330 [Selaginella moellendorffii]
Length = 351
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/271 (62%), Positives = 212/271 (78%), Gaps = 4/271 (1%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
+PAAG K KN E+KDD+ A+R +K +MR LS P +Y +WWSL ++KYAGTAL V
Sbjct: 73 LPAAGFKGEKKNPGEIKDDSAAARNDKQAVMRVLSVSPMADYSVWWSLGENKYAGTALFV 132
Query: 61 KKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 117
K CF+P V+F+++ K A ++E DGR+ILAEF +F LLNTYAPNNGWKEEEN F RRR
Sbjct: 133 KNCFKPVSVAFNIDNKGKDAQRHEIDGRIILAEFGSFTLLNTYAPNNGWKEEENGFVRRR 192
Query: 118 KWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGF 177
WDK++ EFV CS KPLIWCGDLNVSH+EIDV+HPEFFA A GY PPNKED GQPGF
Sbjct: 193 AWDKKVLEFVSSCS-KPLIWCGDLNVSHQEIDVTHPEFFANATQPGYTPPNKEDAGQPGF 251
Query: 178 TIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 237
T+ ER RF AIL G L+D YR LH+++D++ GF+WSGNP+GKYRGKRMRIDYF++S+ L
Sbjct: 252 TLNERARFSAILNRGNLVDTYRHLHEKQDLEAGFTWSGNPVGKYRGKRMRIDYFLISKAL 311
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R+ + ++ G GIELEGF GSDHCP+++EL
Sbjct: 312 LPRLASSKIHGRGIELEGFLGSDHCPLTMEL 342
>gi|302824275|ref|XP_002993782.1| hypothetical protein SELMODRAFT_137611 [Selaginella moellendorffii]
gi|300138378|gb|EFJ05148.1| hypothetical protein SELMODRAFT_137611 [Selaginella moellendorffii]
Length = 351
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 169/271 (62%), Positives = 211/271 (77%), Gaps = 4/271 (1%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
+PAAG K KN E+KDD+ A+R +K +MR LS P +Y +WWSL ++KYAGTAL V
Sbjct: 73 LPAAGFKGEKKNPGEIKDDSAAARNDKQAVMRVLSVSPMADYSVWWSLGENKYAGTALFV 132
Query: 61 KKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 117
K CF+P V+F+++ K A ++E DGR+ILAEF +F LLNTYAPNNGWKEEEN F RRR
Sbjct: 133 KNCFKPVSVAFNIDNKGKDAQRHEIDGRIILAEFGSFTLLNTYAPNNGWKEEENGFVRRR 192
Query: 118 KWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGF 177
WDK++ EFV CS KPLIWCGDLNVSH+EIDV+HPEFFA A GY PPNKED GQPGF
Sbjct: 193 AWDKKVLEFVSSCS-KPLIWCGDLNVSHQEIDVTHPEFFANATQPGYTPPNKEDAGQPGF 251
Query: 178 TIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 237
T+ ER RF IL G L+D YR LH+++D++ GF+WSGNP+GKYRGKRMRIDYF++S+ L
Sbjct: 252 TLNERARFSTILNRGNLVDTYRHLHEKQDLEAGFTWSGNPVGKYRGKRMRIDYFLISKAL 311
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R+ + ++ G GIELEGF GSDHCP+++EL
Sbjct: 312 LPRLASSKIHGRGIELEGFLGSDHCPLTMEL 342
>gi|358348991|ref|XP_003638524.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355504459|gb|AES85662.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 278
Score = 309 bits (792), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 145/182 (79%), Positives = 158/182 (86%)
Query: 10 PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV 69
PKN E+KDDT A+REEK ILMRALS+PPF NY +WWSLA+SKYAGTAL VKKCF+PK V
Sbjct: 97 PKNQAEVKDDTNAAREEKRILMRALSNPPFGNYHVWWSLAESKYAGTALFVKKCFKPKSV 156
Query: 70 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 129
F+L+K A K+EPDGRVIL EFET LLNTY PNNGWKEE NSFQRRRKWDKRI EFV Q
Sbjct: 157 VFNLDKIASKHEPDGRVILVEFETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVNQ 216
Query: 130 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 189
S KPLIWCGDLNVSHEEIDVS PEFF+ AKLNGYVPPNKED+GQPGFT+AER RFG IL
Sbjct: 217 NSDKPLIWCGDLNVSHEEIDVSQPEFFSTAKLNGYVPPNKEDYGQPGFTLAERARFGTIL 276
Query: 190 KE 191
+E
Sbjct: 277 RE 278
>gi|218186665|gb|EEC69092.1| hypothetical protein OsI_37986 [Oryza sativa Indica Group]
Length = 470
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 131/170 (77%), Positives = 157/170 (92%), Gaps = 1/170 (0%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAGSK APKN +LKDDT +SR+EK +++RALSSPPFK+Y++WWSL+DSKYAGTA+++
Sbjct: 100 MPAAGSKGAPKNPGQLKDDTSSSRDEKQVVLRALSSPPFKDYRVWWSLSDSKYAGTAMII 159
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
KK F+PKKVSF+L++T+ K+EPDGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWD
Sbjct: 160 KKKFEPKKVSFNLDRTSSKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWD 219
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 170
KR+ EFV Q KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKE
Sbjct: 220 KRMLEFVQQVD-KPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKE 268
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 80/100 (80%), Positives = 95/100 (95%)
Query: 171 DWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDY 230
D GQPGFT++ER+RFG IL +G+L+DAYR+LHKEKDMDCGFSWSG+PIGKYRGKRMRIDY
Sbjct: 360 DCGQPGFTLSERRRFGNILSQGKLVDAYRYLHKEKDMDCGFSWSGHPIGKYRGKRMRIDY 419
Query: 231 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
F+VSE+LKD+I++C++ G GIELEGFYGSDHCPVSLELSE
Sbjct: 420 FLVSEKLKDQIVSCDIHGRGIELEGFYGSDHCPVSLELSE 459
>gi|148908559|gb|ABR17389.1| unknown [Picea sitchensis]
Length = 303
Score = 279 bits (714), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 130/194 (67%), Positives = 157/194 (80%), Gaps = 3/194 (1%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
+PAAG K KN ELKDDT ++REEK LMRA+S PP NY++WWSL D+KYAGTAL V
Sbjct: 93 IPAAGGKGGSKNQGELKDDTSSAREEKQTLMRAISCPPLSNYRVWWSLGDTKYAGTALFV 152
Query: 61 KKCFQPKKVSFSLEK---TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 117
K QP KV+FSL++ +ALK+E DGRVI+AEFE F LLN+Y PNNGWK++E F+RRR
Sbjct: 153 KHQCQPLKVTFSLDQIGSSALKHEVDGRVIVAEFEGFRLLNSYVPNNGWKDDETGFRRRR 212
Query: 118 KWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGF 177
KWD+R+ +FVL S KPLIWCGDLNVSH++IDVSHPEFF+ AK+ GY+PPNKED GQPGF
Sbjct: 213 KWDQRMLDFVLGVSDKPLIWCGDLNVSHQDIDVSHPEFFSNAKIAGYMPPNKEDCGQPGF 272
Query: 178 TIAERKRFGAILKE 191
TIAER+RF IL +
Sbjct: 273 TIAERRRFSTILSQ 286
>gi|194695010|gb|ACF81589.1| unknown [Zea mays]
gi|413917519|gb|AFW57451.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 161
Score = 256 bits (653), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 121/157 (77%), Positives = 138/157 (87%), Gaps = 1/157 (0%)
Query: 125 EFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 184
EFV Q KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPNKED GQPGFT AER+R
Sbjct: 3 EFV-QHVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRR 61
Query: 185 FGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 244
FG IL +G+L+DAYR LHKEKD+D GFSWSG+PIGKYRGKRMRIDYF+VSE+LKDRI++C
Sbjct: 62 FGNILFQGKLVDAYRHLHKEKDIDGGFSWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSC 121
Query: 245 EMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKK 281
EM G GIEL+GFYGSDHCPVSLELSEA ++ + K
Sbjct: 122 EMHGRGIELDGFYGSDHCPVSLELSEAVAEEAPGQPK 158
>gi|255085372|ref|XP_002505117.1| predicted protein [Micromonas sp. RCC299]
gi|226520386|gb|ACO66375.1| predicted protein [Micromonas sp. RCC299]
Length = 418
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 163/317 (51%), Gaps = 51/317 (16%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
+PAA AP LKDDTKA+RE+ ++ L P Y+ +WS AD K AG A+LV
Sbjct: 86 LPAA----APNRRGTLKDDTKAAREDAALIHLCLRQKPLSAYRPYWSCADVKRAGCAVLV 141
Query: 61 KKCFQPKKVSFSLEKT----ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 116
KK V SL + +GRV+L EF +F LLNTYA NNGW +E SF +R
Sbjct: 142 KKDVDVVSVRRSLTASNGANGDVAHDEGRVLLLEFRSFVLLNTYAQNNGWTQE--SFAKR 199
Query: 117 RKWDKRIQEFVLQCSG--------------------KPLIWCGDLNVSHEEIDVSHPEFF 156
R+WD + F+ + KPL+W GDLNV H+EIDV+HP FF
Sbjct: 200 RRWDAEVHAFIAGNTAGATPRPRFDDSDLNATSRRFKPLMWTGDLNVCHKEIDVTHPRFF 259
Query: 157 AAAKLNGY-------VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 209
A K G P + D GQPGFT ER RF ++ L+DAYR + D+
Sbjct: 260 ATQKPEGRKGKPPPETPTDPGDCGQPGFTRNERTRFERLVTAHALVDAYR--RQRGDVKD 317
Query: 210 GFSWSGNP----IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL--------EGFY 257
+W G+P +GKYRG MR+DYF V EL +R+ CE G+ L F+
Sbjct: 318 AMTWMGHPGVVAVGKYRGMGMRLDYFFVETELANRVEVCEQATDGMGLAAMAERPASAFF 377
Query: 258 GSDHCPVSLELSEASSD 274
GSDHC V L L + D
Sbjct: 378 GSDHCAVYLRLKDVPLD 394
>gi|124504779|ref|XP_001351132.1| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium falciparum 3D7]
gi|15375379|emb|CAB39006.2| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium falciparum 3D7]
Length = 617
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 151/260 (58%), Gaps = 27/260 (10%)
Query: 30 LMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL--EKTALKYEPDGRVI 87
+M + + FK+Y ++SLA+ KY+G +LVKK + + ++L E A + +GRVI
Sbjct: 361 IMEQILNDDFKDYNAYFSLANIKYSGQLVLVKKNIHIESIRYNLFFENNAHIHHDEGRVI 420
Query: 88 LAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG---KPLIWCGDLNVS 144
L EF F+LL+TY PNNG+ + F+RRR +D+++Q+FV KPL+W GDLN++
Sbjct: 421 LVEFSNFFLLSTYTPNNGF--DHVKFERRRLFDEQLQKFVTILRNEKQKPLVWTGDLNIA 478
Query: 145 HEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL--- 201
E+ID+SHP F K G VP KE GQPG T ERK F IL G L+D+YR+L
Sbjct: 479 PEDIDLSHPAEFRRMK-KGNVP--KEFIGQPGCTDFERKNFQKILTAGNLVDSYRYLQNI 535
Query: 202 -----------HKEKDMDCGFSWSGNP--IGKYRGKRMRIDYFIVSEELKDRIIACEMQG 248
H D ++W P +GK K MRID+FIVS+E +RI +QG
Sbjct: 536 KLNEDKKNNIKHTPNINDNIYTWRC-PFLLGKSCNKAMRIDHFIVSKEFLNRINKIHIQG 594
Query: 249 HGIELEGFYGSDHCPVSLEL 268
+ FYGSDHCPV L L
Sbjct: 595 FSVFHNNFYGSDHCPVILYL 614
>gi|70954382|ref|XP_746240.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium chabaudi chabaudi]
gi|56526785|emb|CAH87963.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium chabaudi chabaudi]
Length = 350
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 148/248 (59%), Gaps = 24/248 (9%)
Query: 39 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYL 96
FK Y ++SLA+ KY+G +LVKK + K V ++L + + +GR+IL EF FYL
Sbjct: 107 FKEYNAYFSLANIKYSGQLVLVKKTIEVKSVRYNLSFDTNPNIHNDEGRIILLEFSNFYL 166
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPE 154
L+TY+PNNG+ + F+RRR +D ++EFVL + K LIW GDLN++ E+ID+SHP
Sbjct: 167 LSTYSPNNGFDAPK--FERRRLFDDSMKEFVLFMKKENKNLIWTGDLNIAPEDIDLSHPI 224
Query: 155 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH------------ 202
F K G VP KE GQPG T AERK F ILK G L+D+YR+
Sbjct: 225 EFRKMK-KGNVP--KEYIGQPGCTDAERKNFKTILKNGDLVDSYRYFENYKIKNDPTYKK 281
Query: 203 KEKDMDCGFSWSGNP--IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 260
K D ++W P IGK + MRID+FIVS+ L D+I E+ G+ + FYGSD
Sbjct: 282 KTNINDNIYTWRC-PFLIGKSCNRAMRIDHFIVSKSLLDKIENVEIHGYSVSHTNFYGSD 340
Query: 261 HCPVSLEL 268
HCPV L +
Sbjct: 341 HCPVILNM 348
>gi|83314890|ref|XP_730557.1| AP endonuclease-related [Plasmodium yoelii yoelii 17XNL]
gi|23490314|gb|EAA22122.1| putative AP endonuclease-related [Plasmodium yoelii yoelii]
Length = 554
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 167/289 (57%), Gaps = 29/289 (10%)
Query: 5 GSKDAPKNHQELKDD--TKASREEKLI---LMRALSSPPFKNYQIWWSLADSKYAGTALL 59
G K+ KN E ++ K + ++ +I ++ + FK Y ++SLA+ KY+G +L
Sbjct: 272 GVKNEVKNEDEERERGLVKNTDQKSMIDYKIVEDILKNDFKEYNSYFSLANIKYSGQLVL 331
Query: 60 VKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 117
VKK + K V ++L E + +GR+IL EF FYLL+TY+PNNG+ ++ F RR+
Sbjct: 332 VKKDIKVKSVRYNLLFETDPNIHNDEGRIILLEFSNFYLLSTYSPNNGF--DQIKFNRRK 389
Query: 118 KWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 175
+D++++ FVL + K LIW GDLN++ E+ID+SHP F K G VP KE GQP
Sbjct: 390 LYDEQMKNFVLFMKNENKNLIWTGDLNIAPEDIDLSHPIEFRKMK-KGNVP--KEYIGQP 446
Query: 176 GFTIAERKRFGAILKEGRLIDAYRFLH------------KEKDMDCGFSWSGNP--IGKY 221
G T AER+ F ILK G L+D+YR+ K D ++W P IGK
Sbjct: 447 GCTDAERENFKTILKNGNLVDSYRYFENYKIKNDPTYKKKTNINDNIYTWRC-PFLIGKS 505
Query: 222 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ MRID+FIVS+ L ++I E+ G+ + FYGSDHCPV L + E
Sbjct: 506 CNRAMRIDHFIVSKNLLNQIENVEIHGYSVSHTNFYGSDHCPVILNMKE 554
>gi|68063675|ref|XP_673834.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium berghei strain ANKA]
gi|68070845|ref|XP_677336.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56491972|emb|CAI02361.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium berghei]
gi|56497413|emb|CAH98029.1| hypothetical protein PB000718.02.0 [Plasmodium berghei]
Length = 346
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/248 (43%), Positives = 148/248 (59%), Gaps = 24/248 (9%)
Query: 39 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYL 96
FK Y ++SLA+ KY+G +LVKK + K V ++L E + +GR+IL EF FYL
Sbjct: 103 FKEYNGYFSLANIKYSGQLVLVKKSIKVKSVRYNLLFETDPNIHNDEGRIILLEFSNFYL 162
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVSHPE 154
L+TY+PNNG+ ++ F+RR +D +++EFVL + K LIW GDLN++ E++D+SHP
Sbjct: 163 LSTYSPNNGF--DQTKFKRRSLFDNQMKEFVLFMKNENKNLIWTGDLNIAPEDVDLSHPI 220
Query: 155 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL------------H 202
F K G VP KE GQPG T AER F ILK G LID+YR+
Sbjct: 221 EFRKMK-KGNVP--KEYIGQPGCTDAERANFKTILKNGDLIDSYRYFENYKIKNDPTYKR 277
Query: 203 KEKDMDCGFSWSGNP--IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 260
K D ++W P IGK + MRID+FIVS+ L ++I E+ G+ + FYGSD
Sbjct: 278 KTNINDNIYTWRC-PFLIGKSCNRAMRIDHFIVSKNLLNQIENIEIHGYSVFHTNFYGSD 336
Query: 261 HCPVSLEL 268
HCPV L +
Sbjct: 337 HCPVILNM 344
>gi|298710453|emb|CBJ25517.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 411
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/297 (39%), Positives = 162/297 (54%), Gaps = 45/297 (15%)
Query: 8 DAPKNHQELKDDTKASREEKLILMRALSSPPFK-NYQIWWSLADSKYAGTALLVKK---- 62
D + +LKDDT A R++ ++ R L + + Y++ SLA+SKYAGTA L+
Sbjct: 122 DTGRKRWQLKDDTAADRKDIALVDRTLRALARRLGYRLVMSLANSKYAGTAALISTWGAV 181
Query: 63 -CFQPKKVSFS-------------LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 108
P ++F+ L K +++ +GRVI E+ + +L Y PNNG K
Sbjct: 182 FAITPVTIAFAGRLGLSALDLPEPLGKLFKEHDREGRVIAIEYPSVTVLALYVPNNGSKA 241
Query: 109 EENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP- 167
E SFQRRR+WD + FV + SGK LI GDLNV+HE+ D++H FF G P
Sbjct: 242 E--SFQRRRRWDDELCGFVDKYSGK-LIITGDLNVAHEDADLTHASFF-----KGMFPAA 293
Query: 168 NKEDWGQPGFTIAERKRFGAILKEGR-LIDAYRFLH---------KEKDMDCGFSWSGNP 217
N ED GQPG T AE++R +L G L+DAYR L+ +M+ G +W G
Sbjct: 294 NPEDSGQPGCTPAEKRRHSRLLASGGGLVDAYRRLNPVPAAGAGGARTEME-GMTWRGTA 352
Query: 218 ------IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+G+Y GK MRIDYF++S L RI ++ G G + +GF GSDHCP+ L L
Sbjct: 353 GNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDHCPLMLTL 409
>gi|303282399|ref|XP_003060491.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457962|gb|EEH55260.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 514
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 142/304 (46%), Gaps = 75/304 (24%)
Query: 38 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTA--LKYEPDGRVILAEFETFY 95
P Y+ W+ AD + AG +LVKK K S SL + A P+GRV+ EFE
Sbjct: 5 PMSRYEPHWACADKRSAGCGVLVKKHIPVKSASRSLTRRAGEASQHPEGRVLFLEFENVT 64
Query: 96 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ----------------CSG------- 132
LLN YA NNGWK E S +RR+WD ++ F+ C+
Sbjct: 65 LLNVYAQNNGWKPE--SMAKRRRWDAELKTFLTNDDDDDDDDDDDDDAQLCAASKDATTS 122
Query: 133 -------------------------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY--- 164
KP++W GDLN H E DV+HPEFFA K G
Sbjct: 123 NDATSKTNASSLRPRRPTRADGKGLKPIVWTGDLNACHTERDVTHPEFFALQKPEGKKGA 182
Query: 165 ----VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP--- 217
PP+ +D GQPGFT ER+RF I+ +L+D YR LH + C +W G+P
Sbjct: 183 PPPETPPDVDDRGQPGFTNNERRRFHDIVTSAKLVDVYRHLHGDARRAC--TWYGHPGVV 240
Query: 218 -IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG-----IELE-----GFYGSDHCPVSL 266
G+Y+G+ MR+DYF VS+ L+ + C LE F+GSDHC V L
Sbjct: 241 ATGRYKGRGMRLDYFFVSDGLERAAVECAQATDAYSDKPAALEQRPDDAFFGSDHCGVYL 300
Query: 267 ELSE 270
+L +
Sbjct: 301 KLKD 304
>gi|221055699|ref|XP_002258988.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium knowlesi strain H]
gi|193809058|emb|CAQ39761.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium knowlesi strain H]
Length = 516
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 160/289 (55%), Gaps = 30/289 (10%)
Query: 3 AAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK 62
A +KD ++ ++K+ + S+ + +M + F NY ++SLA+ KY+G +LVK+
Sbjct: 232 AKEAKDGERDRGKVKNTDQKSQVD-FDIMEKILKEDFHNYNAYFSLANIKYSGQLVLVKR 290
Query: 63 CFQPKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
K + ++L + ++ +GRVI+ EF FYLL+TY PNNG+ E F+RRR +D
Sbjct: 291 SIPIKSIRYNLSFDLDPREHHHEGRVIIVEFSKFYLLSTYTPNNGF--EPVKFERRRLFD 348
Query: 121 KRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
++++EFV L+ K L+W GDLN++ E+ D+SHP F K G VP KE GQPG T
Sbjct: 349 EKLKEFVSVLRNKKKNLVWTGDLNIAPEDTDLSHPAEFRRMK-KGNVP--KEFVGQPGCT 405
Query: 179 IAERKRFGAILKEGRLIDAYRFL--------------HKEKDMDCG---FSWSGNP--IG 219
ERK F IL G LID+YR L H D ++W P +G
Sbjct: 406 DFERKNFRGILSAGDLIDSYRHLANLRANKGEPGKATHNRAVSDINDNIYTWRC-PFLMG 464
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K K MRID+FIVS + + E+ G+ + FYGSDHCPV L L
Sbjct: 465 KSCNKAMRIDHFIVSRDFMPNVENVEIHGYSVFHNNFYGSDHCPVILHL 513
>gi|221481831|gb|EEE20201.1| ap endonuclease, putative [Toxoplasma gondii GT1]
Length = 630
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 160/297 (53%), Gaps = 33/297 (11%)
Query: 2 PAAGSKDA-PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
P A D P++H +KD K S E L AL + N+ + SLAD +Y+G + +
Sbjct: 249 PGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTL-LPNHSLLISLADWRYSGQMMFI 307
Query: 61 KKCFQPKKVSFSLEK---TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 117
+K Q + ++L A +++ +GRVILAEFE F +L TY+PNNG + SF+RRR
Sbjct: 308 RKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTTYSPNNGATPK--SFERRR 365
Query: 118 KWDKRIQEFVLQCSG-------------KPLIWCGDLNVSHEEIDVSHPEFFAAA---KL 161
WD+R+ +FV QCS KPL+W GDLN + E+ID+S P+ F +
Sbjct: 366 LWDERMLQFVTQCSSSPHCEGLPVQLLKKPLVWVGDLNCAPEDIDLSDPDQFRSVIHETA 425
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM----DCGFSWSGNP 217
+G + P+ + GQ G T AER+RF AIL+ G L+DA+R LH + +SW G
Sbjct: 426 DGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFRELHPRTEPPPLESAEYSWRGFG 483
Query: 218 IGK----YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
RG MR+D+ +++E L + + G G F+GSDHCPV + E
Sbjct: 484 GSGSRGLLRGLGMRLDHIVLTETLMPAVELVRICGAGKSKANFFGSDHCPVLVRFKE 540
>gi|310893421|gb|ADP37706.1| AP endonuclease ExoIII [Toxoplasma gondii]
Length = 513
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 158/284 (55%), Gaps = 21/284 (7%)
Query: 2 PAAGSKDA-PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
P A D P++H +KD K S E L AL + N+ + SLAD +Y+G + +
Sbjct: 146 PGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTL-LPNHSLLISLADWRYSGQMMFI 204
Query: 61 KKCFQPKKVSFSLEK---TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 117
+K Q + ++L A +++ +GRVILAEFE F +L TY+PNNG + SF+RRR
Sbjct: 205 RKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTTYSPNNGATPK--SFERRR 262
Query: 118 KWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA---KLNGYVPPNKEDWGQ 174
WD+R+ +FV Q KPL+W GDLN + E+ID+S P+ F + +G + P+ + GQ
Sbjct: 263 LWDERMLQFVTQLK-KPLVWVGDLNCAPEDIDLSDPDQFRSVIHETADGTIDPD--NIGQ 319
Query: 175 PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM----DCGFSWSGNPIGK----YRGKRM 226
G T AER+RF AIL+ G L+DA+R LH + +SW G RG M
Sbjct: 320 AGCTDAERRRFRAILERGNLVDAFRELHPRTEPPPLESAEYSWRGFGGSGSRGLLRGLGM 379
Query: 227 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
R+D+ +++E L + + G G F+GSDHCPV + E
Sbjct: 380 RLDHIVLTETLMPAVELVRICGAGKSKANFFGSDHCPVLVRFKE 423
>gi|156094081|ref|XP_001613078.1| AP endonuclease [Plasmodium vivax Sal-1]
gi|148801952|gb|EDL43351.1| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium vivax]
Length = 535
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 165/301 (54%), Gaps = 44/301 (14%)
Query: 6 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQ 65
SK+ ++ ++K+ + S+ + I+ + L F NY ++SLA+ KY+G +L+K+
Sbjct: 219 SKEGKRDRGKVKNTDQKSQVDFDIMSKILKKD-FHNYNAYFSLANIKYSGQLVLIKRNIP 277
Query: 66 PKKVSFSLEKTA--LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 123
K + ++L A ++ +GRVI+AEF FYLL+TY PNNG+ + F+RRR +D+++
Sbjct: 278 VKSIRYNLRLDADPSEHHEEGRVIIAEFSKFYLLSTYTPNNGF--DTVKFERRRLFDEQL 335
Query: 124 QEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAE 181
++FV L+ GK LIW GDLN++ E+ID+SHP F K G VP KE GQPG T E
Sbjct: 336 KKFVSHLRNMGKNLIWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFE 392
Query: 182 RKRFGAILKEGRLIDAYRFL-------------------HKEKDMDC-GFSWSGNP---- 217
RK F IL G L+D+YR L K C G + +G P
Sbjct: 393 RKNFMGILSAGDLVDSYRQLAGKGKAKKGEASKGETNKGETSKGGSCNGAATNGAPDIND 452
Query: 218 ----------IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 267
+GK K MRID+FIVS + + ++ G+ + + FYGSDHCPV L
Sbjct: 453 NIYTWRCPFLMGKSCNKAMRIDHFIVSRGFMPNVQSVDIHGYSVFHKNFYGSDHCPVILH 512
Query: 268 L 268
L
Sbjct: 513 L 513
>gi|389583540|dbj|GAB66275.1| AP endonuclease, partial [Plasmodium cynomolgi strain B]
Length = 389
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 162/296 (54%), Gaps = 40/296 (13%)
Query: 6 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQ 65
+KD ++ +K+ + S+ + +M + F NY ++SLA+ KY+G +L+K+
Sbjct: 82 AKDGKRDRGRVKNTDQKSQVD-FEIMEQILKKDFHNYNAYFSLANIKYSGQLVLIKRSIP 140
Query: 66 PKKVSFSLEKTA--LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 123
K + ++L A ++ +GRVI+AEF F+LL+TY PNNG+ + F+RRR +D+++
Sbjct: 141 VKSIRYNLSFDADPSEHHEEGRVIVAEFSNFFLLSTYTPNNGF--DLIKFERRRLFDEQL 198
Query: 124 QEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAE 181
+EF VL+ K LIW GDLN++ E+ID+SHP F K G VP KE GQPG T E
Sbjct: 199 KEFVSVLKNKKKNLIWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFE 255
Query: 182 RKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP------------------------ 217
RK F IL G LID+YR L K + + G + G P
Sbjct: 256 RKNFRGILSAGDLIDSYRHLAKLRG-NKGGAVKGEPAKGEPLKVTPGKVTGDINDNIYTW 314
Query: 218 -----IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+GK K MRID+FIVS + + + ++ G+ + FYGSDHCPV L L
Sbjct: 315 RCPFLMGKSCNKAMRIDHFIVSRDFMPNVESVDIHGYSVFHNNFYGSDHCPVILRL 370
>gi|237843341|ref|XP_002370968.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Toxoplasma
gondii ME49]
gi|211968632|gb|EEB03828.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Toxoplasma
gondii ME49]
gi|221502330|gb|EEE28063.1| ap endonuclease, putative [Toxoplasma gondii VEG]
Length = 630
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 158/291 (54%), Gaps = 33/291 (11%)
Query: 2 PAAGSKDA-PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
P A D P++H +KD K S E L AL + N+ + SLAD +Y+G + +
Sbjct: 249 PGAKRGDGMPRDHGRIKDSDKVSSVEARELREALHTL-LPNHSLLISLADWRYSGQMMFI 307
Query: 61 KKCFQPKKVSFSLEK---TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 117
+K Q + ++L A +++ +GRVILAEFE F +L TY+PNNG + SF+RRR
Sbjct: 308 RKDVQVCSLRYNLSLDGCPAHEHDFEGRVILAEFEAFCVLTTYSPNNGATPK--SFERRR 365
Query: 118 KWDKRIQEFVLQCSG-------------KPLIWCGDLNVSHEEIDVSHPEFFAAA---KL 161
WD+R+ +FV QCS KPL+W GDLN + E+ID+S P+ F +
Sbjct: 366 LWDERMLQFVTQCSSSPHCEGLPVQLLKKPLVWVGDLNCAPEDIDLSDPDQFRSVIHETA 425
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM----DCGFSWSGNP 217
+G + P+ + GQ G T AER+RF AIL+ G L+DA+R LH + +SW G
Sbjct: 426 DGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFRELHPRTEPPPLESAEYSWRGFG 483
Query: 218 IGK----YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 264
RG MR+D+ +++E L + + G G F+GSDHCPV
Sbjct: 484 GSGSRGLLRGLGMRLDHIVLTETLMPAVELVRICGAGKSKANFFGSDHCPV 534
>gi|14578320|gb|AAF99486.1| PV1H14200_P [Plasmodium vivax]
Length = 540
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 165/306 (53%), Gaps = 49/306 (16%)
Query: 6 SKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQ 65
SK+ ++ ++K+ + S+ + I+ + L F NY ++SLA+ KY+G +L+K+
Sbjct: 219 SKEGKRDRGKVKNTDQKSQVDFDIMSKILKKD-FHNYNAYFSLANIKYSGQLVLIKRNIP 277
Query: 66 PKKVSFSLEKTA--LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 123
K + ++L A ++ +GRVI+AEF FYLL+TY PNNG+ + F+RRR +D+++
Sbjct: 278 VKSIRYNLRLDADPSEHHEEGRVIIAEFSKFYLLSTYTPNNGF--DTVKFERRRLFDEQL 335
Query: 124 QEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAE 181
++FV L+ GK LIW GDLN++ E+ID+SHP F K G VP KE GQPG T E
Sbjct: 336 KKFVSHLRNMGKNLIWTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFE 392
Query: 182 RKRFGAILKEGRLIDAYRFL-------------------HKEKDMDC------GFSWSGN 216
RK F IL G L+D+YR L K C G + +G
Sbjct: 393 RKNFMGILSAGDLVDSYRQLAGKGKAKKGEASKGETNKGETSKGGSCNGGSCNGAATNGA 452
Query: 217 P--------------IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 262
P +GK K MRID+FIVS + + ++ G+ + + FYGSDHC
Sbjct: 453 PDINDNIYTWRCPFLMGKSCNKAMRIDHFIVSRGFMPNVQSVDIHGYSVFHKNFYGSDHC 512
Query: 263 PVSLEL 268
PV L L
Sbjct: 513 PVILHL 518
>gi|294932897|ref|XP_002780496.1| ap endonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239890430|gb|EER12291.1| ap endonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 395
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 151/253 (59%), Gaps = 23/253 (9%)
Query: 43 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALK----YEPDGRVILAEF--ETFYL 96
Q+++SL + K AG + ++K +P +V F + T + + P+GR+ILA+F E L
Sbjct: 114 QLYFSLRNIKQAGVGMFMRKMPKPDRVHFKIPGTEVGGDGFHHPEGRIILADFASENLQL 173
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--QCSGKPLIWCGDLNVSHEEIDVS-HP 153
L TY PNNGW E+ SF +RR++D ++ F+ + G+ +IW GDLNV+ DV +P
Sbjct: 174 LLTYVPNNGWTED--SFAKRRRFDCEVKSFLANAKSQGERIIWLGDLNVAASWNDVGPNP 231
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
+F K + + +D GQPGFT AE+ RF +L+ G LID+YR H E+D + +W
Sbjct: 232 AWFRRQKQSPGL--CDDDVGQPGFTQAEQNRFAELLEAGGLIDSYRQCHHEEDWEKDATW 289
Query: 214 SGNP--------IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV- 264
G P G++ GK MRIDY +V E +KD I++ E G G E +GF GSDH P+
Sbjct: 290 RGAPGKPPNPPEFGRFYGKGMRIDYVLVPESMKDDILSVENLGIGKERKGFMGSDHAPLL 349
Query: 265 -SLELSEASSDSE 276
++++S+ + SE
Sbjct: 350 AAIKVSQPAVLSE 362
>gi|428171338|gb|EKX40256.1| hypothetical protein GUITHDRAFT_75737 [Guillardia theta CCMP2712]
Length = 304
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 133/217 (61%), Gaps = 26/217 (11%)
Query: 17 KDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLE-K 75
+D+ K +EE ++ AL P NY + WSLAD +YAGTAL+++K + K VSF
Sbjct: 105 RDNEKECKEELELVASALRKEPLSNYVVRWSLADWRYAGTALMIRKGIR-KPVSFHYNLD 163
Query: 76 TALKYEPDGRVILAEF-----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 130
+++ +GRV +A+F + ++NTYAPNNGWKEE N F +RR+WD R+ FV C
Sbjct: 164 LGQEHDENGRVCMAKFVKDDGKELLVVNTYAPNNGWKEESN-FAKRREWDTRLLSFVRTC 222
Query: 131 --SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 188
G + W GD+NV+H++ DV+HP+FF + D GQPGFT E++RF +
Sbjct: 223 RERGMEVAWVGDMNVAHKDCDVTHPDFF------------RGDAGQPGFTANEQERFSQV 270
Query: 189 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 225
L+EG L+DA+R LH ++ F+ S +P +RG+R
Sbjct: 271 LEEGSLVDAFRLLHSPEE----FTSSDDPAWTWRGQR 303
>gi|308808326|ref|XP_003081473.1| Apurinic/apyrimidinic endonuclease and related enzymes (ISS)
[Ostreococcus tauri]
gi|116059936|emb|CAL55995.1| Apurinic/apyrimidinic endonuclease and related enzymes (ISS)
[Ostreococcus tauri]
Length = 447
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 149/285 (52%), Gaps = 40/285 (14%)
Query: 11 KNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCF-QPKKV 69
++H ++ D+ K E+K ++ + L PF+ Y + LA +K GT +LVKK +P +V
Sbjct: 151 RDHTKMSDEGKVYAEDKAVMEKMLGGYPFREYDAHFCLAGAKRYGTCVLVKKALKKPIRV 210
Query: 70 SFSLEKTALKYEPD------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 123
+ +L PD GRV+L E+E +LNTY P+NG E +++R WD R+
Sbjct: 211 ARTLALDGTDASPDDIDTNEGRVLLLEYEKVIVLNTYVPHNGGNPER--WEKRAMWDFRV 268
Query: 124 QEFVLQCSGKP-LIWCGDLNVSHEEIDVS-HPEFFAAAKLNGYVPPNKEDWGQPGFTIAE 181
+ F+ GK +IW GDLN +H ++DV+ PE F G GFT+ E
Sbjct: 269 KRFLTHYKGKKDVIWLGDLNCAHRDLDVAPSPEQFI---------------GVGGFTVPE 313
Query: 182 RKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI 241
R+RF IL ++DAYR LH ++ F+W G IG G MR+DYFIV R+
Sbjct: 314 RQRFTDILSTSDMVDAYRALHGDRQT---FTWRG--IGMGSGLAMRLDYFIVPRTFVHRL 368
Query: 242 IACEMQGHGIE--------LEGFYGSDHCPVSLELSEA-SSDSEK 277
+CE + + F+GSDHC + L L + +SD+EK
Sbjct: 369 KSCETSTDRFDDAVARERPISCFFGSDHCALYLTLHKRDASDAEK 413
>gi|323450905|gb|EGB06784.1| hypothetical protein AURANDRAFT_71945 [Aureococcus anophagefferens]
Length = 1309
Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats.
Identities = 107/309 (34%), Positives = 161/309 (52%), Gaps = 49/309 (15%)
Query: 9 APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKK-CFQPK 67
AP+N + + D ++K+ L PF +SLAD +YAGT L++ P+
Sbjct: 82 APRNRRRVNDKF---HDDKVQCAALLDVGPFA--APIYSLADWRYAGTCCLLRSDGPAPR 136
Query: 68 KVSFSLEKT-----------ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 116
+VSFSLE A ++PDGRVI+ E+ET +L+TY+PNNG + SF+RR
Sbjct: 137 RVSFSLEPPDAPPARNSVAFADDHDPDGRVIVLEYETLVVLHTYSPNNG--NDAKSFERR 194
Query: 117 RKWDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK----- 169
R W+ +++ F ++ G+ L++ GDLN + + D+SHP +F A N P K
Sbjct: 195 RLWEAKVRAFAEAVRVRGRSLVYVGDLNCAPTDDDLSHPAWFRAWNSN---QPGKRLGKD 251
Query: 170 ------EDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG-----FSWSGNP- 217
+D GQPG T E + F A+L+ G L DA+R FSW G P
Sbjct: 252 RERLEADDEGQPGCTPRESRYFDALLRAGGLFDAFRDARGAGAGAATIEGPHFSWRGPPG 311
Query: 218 ------IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
G+Y GK MRID+ +VS + + +C++ G G+ +GF GSDHCP+ L L +
Sbjct: 312 RDGLPETGRYYGKGMRIDHALVSTGVA--VESCDLLGRGVGRDGFMGSDHCPLRLVLRGS 369
Query: 272 SSDSEKREK 280
++ E+
Sbjct: 370 AAPGADDER 378
>gi|145351399|ref|XP_001420068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580301|gb|ABO98361.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 371
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 138/274 (50%), Gaps = 36/274 (13%)
Query: 12 NHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCF-QPKKVS 70
+H ++ + K R+EK + + PFKNY ++ LA+++ AG +VKKC +P +V+
Sbjct: 77 DHAKMGAEDKKLRDEKAFIEALMGRRPFKNYDAYYCLANARRAGVITMVKKCLAKPIRVA 136
Query: 71 FSLEKTALKYEPD------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 124
+L PD GRV++ E+E +LNTY P+NG E +++R WD R+Q
Sbjct: 137 RTLALDGRDVTPDEIDTNEGRVLMLEYEKMIVLNTYVPHNGSNAER--YEKRALWDFRVQ 194
Query: 125 EFVLQCSGKP-LIWCGDLNVSHEEIDVS-HPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 182
F+ GK ++W GDLNV+H++ DV P F G GFT+ ER
Sbjct: 195 RFLENYRGKKDVVWMGDLNVAHQDHDVGPSPRLFE---------------GVGGFTLPER 239
Query: 183 KRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRII 242
+RF IL ++D YR + ++ S G + ++G MR+DYF+V +L RI
Sbjct: 240 RRFTDILAATDMVDTYRAFNGDRLTYTWRSTRGQGLDGWQG--MRLDYFVVPRKLVARIK 297
Query: 243 ACEMQ--------GHGIELEGFYGSDHCPVSLEL 268
+CE + + F SDHC + L L
Sbjct: 298 SCETSTDRFDDTTAQSMPMSCFMDSDHCMIHLSL 331
>gi|195620344|gb|ACG32002.1| hypothetical protein [Zea mays]
Length = 207
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 88/108 (81%), Gaps = 1/108 (0%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAGSK APKN ELKDDT SR+EK +++RALS+ PFK+Y++WWSL+DSKYAGTA+ +
Sbjct: 91 MPAAGSKGAPKNPSELKDDTSLSRDEKQVVLRALSASPFKDYRVWWSLSDSKYAGTAMFI 150
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 108
KK F+PKKVSF+L++T+ K+E DGRVI+AEFE+F L + + W E
Sbjct: 151 KKKFEPKKVSFNLDRTSSKHEADGRVIIAEFESF-LFTEHLFSKQWME 197
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 129/232 (55%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+NY +W+ A+ K Y+GTA+ K+ +P VS+ + + EP+GR I EFE FYLL
Sbjct: 47 LENYHQYWNYAERKGYSGTAVFTKQ--EPLSVSYGIGED--DDEPEGRCITLEFEDFYLL 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ K + + + R W++R++ ++ + KP+I+CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--KRDLSRLEDRLHWEERVRAYIKELDEIKPVIYCGDLNVAHNEIDLRNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + G GFT ER++ +L EG +D++R L+ EKD + WS
Sbjct: 158 ------------KSNHGNSGFTTEEREKMSTLLNEG-FVDSFRHLYPEKDQSYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYFIVS+ LKD + M + GSDHCPV +E+
Sbjct: 204 SKVRERNIGWRIDYFIVSDRLKDSLKDAGMHTDVL------GSDHCPVYIEI 249
>gi|229086305|ref|ZP_04218483.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
gi|228697000|gb|EEL49807.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
Length = 252
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 128/231 (55%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y ++W+ A K Y+GTA+L KK +P V++ L +++ +GR+I EFE FY+L Y
Sbjct: 51 YYVYWNYAVKKGYSGTAILTKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMLTLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K R KW++ I ++ + K P+I+CGDLNV+H+EID+ +P
Sbjct: 107 TPNA--KRGLERLDYRMKWEEDILSYITKLDKKKPVIFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ERKRF IL EG ID YR+L+ D + +SW +
Sbjct: 159 ---------KTNRKNPGFSDQERKRFTQILDEG-FIDTYRYLY--PDREGAYSWWSYRMN 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + R+DYFIVSE LKD+I+ ++ + GSDHCPV L +
Sbjct: 207 A-RAKNIGWRLDYFIVSERLKDKIVDAKINSEVM------GSDHCPVELNM 250
>gi|375309937|ref|ZP_09775215.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
gi|375077890|gb|EHS56120.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
Length = 254
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 137/266 (51%), Gaps = 41/266 (15%)
Query: 14 QELKDDTKASREEKL----ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKK 68
+E D +E KL ILM + + Y +W+ A+ K Y+GTA+ K F+P
Sbjct: 24 KETNPDIFCVQETKLQEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--FKPLS 76
Query: 69 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 128
V + LE+ EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++
Sbjct: 77 VHYGLEENG---EPEGRTITLEFERFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRNYLQ 131
Query: 129 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 187
Q + KP+I CGDLNV+H+EID+ + K ++G GFT ER+R
Sbjct: 132 QLDASKPVIVCGDLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQ 176
Query: 188 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 247
+L G ID +R + ++ D WS P + R RIDYF+VS+ L+ +I +
Sbjct: 177 LLGAG-FIDTFRHFYPDR-TDVYSWWSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASID 234
Query: 248 GHGIELEGFYGSDHCPVSLELSEASS 273
H GSDHCPV L++ + S+
Sbjct: 235 CH------ITGSDHCPVILDMQDISA 254
>gi|401412245|ref|XP_003885570.1| hypothetical protein NCLIV_059670 [Neospora caninum Liverpool]
gi|325119989|emb|CBZ55542.1| hypothetical protein NCLIV_059670 [Neospora caninum Liverpool]
Length = 455
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 137/273 (50%), Gaps = 58/273 (21%)
Query: 2 PAAGSKDA-PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
P A D P++ +K+ K S E + AL++ ++++ SLAD +Y+G + +
Sbjct: 147 PGAKRGDGMPRDRSRIKESDKVSSVEAREIREALNTL-LPDHKLLISLADWRYSGQMMFI 205
Query: 61 KKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 120
+ P+GR+ILAEF F +L TY+PNNG + SF+RRR WD
Sbjct: 206 RNDL-----------------PEGRIILAEFSPFCVLTTYSPNNGGTPK--SFERRRLWD 246
Query: 121 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA---KLNGYVPPNKEDWGQPGF 177
+R+ EFV Q KPL+W GDLN + E+ID+S PE F + +G + P+ + GQ G
Sbjct: 247 ERMLEFVTQLK-KPLVWVGDLNCAPEDIDLSDPEQFRSVIHESADGTIDPD--NIGQAGC 303
Query: 178 TIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 237
T AER+RF AIL+ G D L DC F SG P G RG MR+D+
Sbjct: 304 TDAERRRFRAILERG--WDQCMCLK-----DC-FGGSG-PRGMLRGLGMRLDH------- 347
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ F+GSDHCPV + E
Sbjct: 348 ---------------IANFFGSDHCPVLVRFKE 365
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
gi|392304359|emb|CCI70722.1| exodeoxyribonuclease III [Paenibacillus polymyxa M1]
Length = 254
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 130/251 (51%), Gaps = 37/251 (14%)
Query: 25 EEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPD 83
+E ILM + + Y +W+ A+ K Y+GTA+ K +P V + LE+ EP+
Sbjct: 39 QEGQILMENM-----EEYAQYWNYAEKKGYSGTAIFTK--IKPLSVHYGLEENE---EPE 88
Query: 84 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 142
GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q KP+I CGDLN
Sbjct: 89 GRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDAQKPVIICGDLN 146
Query: 143 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 202
V+H+EID+ + K ++G GFT ER R +L G ID +R+ +
Sbjct: 147 VAHQEIDLKNA---------------KANYGNAGFTPEERDRMSQLLNAG-FIDTFRYFY 190
Query: 203 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 262
++ D WS P + R RIDYF+VSE L+ ++ + H GSDHC
Sbjct: 191 PDR-TDVYSWWSYMPKVRERNIGWRIDYFLVSERLRPLLMDASIDCH------ITGSDHC 243
Query: 263 PVSLELSEASS 273
PV L+L + S+
Sbjct: 244 PVILDLQDISA 254
>gi|403745673|ref|ZP_10954450.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121241|gb|EJY55561.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
Length = 219
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 121/230 (52%), Gaps = 32/230 (13%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
+YQ +W+ A+ K Y+GTA+ K P V + +E + EP+GR+I EFE Y++
Sbjct: 18 SYQQYWNYAEKKGYSGTAVFTK--IPPLSVRYGIEDDS---EPEGRIITLEFEACYVVTV 72
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN K + + R +W+ R + ++L KP+I CGDLNV+HEEID+ +
Sbjct: 73 YTPNA--KRDLSRLPYRLEWEDRFRAYLLHLDQNKPVIACGDLNVAHEEIDIKNA----- 125
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
K + G GFT ER + +L G D +R+LH ++ D WS P
Sbjct: 126 ----------KSNRGNSGFTDEERSKMTQLLDAG-FTDTFRYLHPDR-ADAYTWWSNMPK 173
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF++S L+D+II + H + GSDHCP+ LE+
Sbjct: 174 VRERNIGWRIDYFLISNRLRDKIIDARIDAHVL------GSDHCPIVLEV 217
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 135/266 (50%), Gaps = 41/266 (15%)
Query: 14 QELKDDTKASREEKL----ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKK 68
+E D +E KL ILM + + Y +W+ A+ K Y+GTA+ K +P
Sbjct: 24 KETNADIFCVQETKLQEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--IKPLS 76
Query: 69 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 128
V + LE+ EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++
Sbjct: 77 VHYGLEENE---EPEGRTITLEFENFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQ 131
Query: 129 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 187
Q KP+I CGDLNV+H+EID+ + K ++G GFT ER+R
Sbjct: 132 QLDALKPVIVCGDLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSL 176
Query: 188 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 247
+L G ID +R + ++ D WS P + R RIDYF+VSE L+ ++ +
Sbjct: 177 LLDAG-FIDTFRTFYPDR-TDVYSWWSYMPKVRERNIGWRIDYFLVSERLRPLLMDASID 234
Query: 248 GHGIELEGFYGSDHCPVSLELSEASS 273
H GSDHCPV L+L + S+
Sbjct: 235 CH------ITGSDHCPVILDLQDISA 254
>gi|218898840|ref|YP_002447251.1| exodeoxyribonuclease III [Bacillus cereus G9842]
gi|218542018|gb|ACK94412.1| exodeoxyribonuclease III [Bacillus cereus G9842]
Length = 252
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 130/235 (55%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ LE +++ +GR+I EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLEIE--EHDQEGRLITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--SDQEGAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|75759849|ref|ZP_00739924.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902244|ref|ZP_04066404.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|228966664|ref|ZP_04127710.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402558959|ref|YP_006601683.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|423359274|ref|ZP_17336777.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|423561854|ref|ZP_17538130.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|434376797|ref|YP_006611441.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
gi|74492665|gb|EAO55806.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228793040|gb|EEM40596.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228857359|gb|EEN01859.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|401085146|gb|EJP93392.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|401202111|gb|EJR08976.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|401787611|gb|AFQ13650.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|401875354|gb|AFQ27521.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
Length = 252
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 130/235 (55%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ LE +++ +GR+I EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGLEIE--EHDQEGRLITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--SDQEGAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|390455653|ref|ZP_10241181.1| exodeoxyribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 136/266 (51%), Gaps = 41/266 (15%)
Query: 14 QELKDDTKASREEKL----ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKK 68
+E D +E KL ILM + + Y +W+ A+ K Y+GTA+ K +P
Sbjct: 24 KETNPDIFCVQETKLQEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--IKPLS 76
Query: 69 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 128
V + LE+ EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++
Sbjct: 77 VHYGLEENG---EPEGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQ 131
Query: 129 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 187
Q + KP+I CGDLNV+H+EID+ + K ++G GFT ER+R
Sbjct: 132 QLDASKPVIICGDLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQ 176
Query: 188 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 247
+L G ID +R + ++ + WS P + R RIDYF+VS+ L+ +I +
Sbjct: 177 LLGAG-FIDTFRHFYPDR-TEVYSWWSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASID 234
Query: 248 GHGIELEGFYGSDHCPVSLELSEASS 273
H GSDHCPV L++ + S+
Sbjct: 235 CH------ITGSDHCPVILDMQDISA 254
>gi|374319924|ref|YP_005073053.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
gi|357198933|gb|AET56830.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
Length = 254
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 136/266 (51%), Gaps = 41/266 (15%)
Query: 14 QELKDDTKASREEKL----ILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKK 68
+E D +E KL ILM + + Y +W+ A+ K Y+GTA+ K +P
Sbjct: 24 KETNPDIFCVQETKLQEGQILMENM-----EEYTQYWNYAEKKGYSGTAIFTK--IKPLS 76
Query: 69 VSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 128
V + LE+ EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++
Sbjct: 77 VHYGLEENG---EPEGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQ 131
Query: 129 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 187
Q + KP+I CGDLNV+H+EID+ + K ++G GFT ER+R
Sbjct: 132 QLDASKPVIVCGDLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQ 176
Query: 188 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 247
+L G ID +R + ++ + WS P + R RIDYF+VS+ L+ +I +
Sbjct: 177 LLGAG-FIDTFRHFYPDRTEVYSW-WSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASID 234
Query: 248 GHGIELEGFYGSDHCPVSLELSEASS 273
H GSDHCPV L++ + S+
Sbjct: 235 CH------ITGSDHCPVILDMQDISA 254
>gi|291457988|ref|ZP_06597378.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291419320|gb|EFE93039.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 272
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/267 (37%), Positives = 144/267 (53%), Gaps = 39/267 (14%)
Query: 16 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE 74
L D +E KL +A S P +Y +W+ A+ K Y+GTAL K+ +P VS+ +
Sbjct: 28 LDADVFCLQETKLQEGQAELSLP--DYHQYWNYAEKKGYSGTALFSKE--EPLSVSYGI- 82
Query: 75 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCS 131
+++ +GRVI AEF Y+L Y PN+ +N QR R +W+ +E++L
Sbjct: 83 -GIPEHDREGRVISAEFPDCYILTVYVPNS-----QNELQRLSYRMEWEDAFREYILSLE 136
Query: 132 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 190
KP+I+CGDLNV+H+EID+ +P A+ N GFT ER +F +L
Sbjct: 137 EKKPVIYCGDLNVAHQEIDLKNP---ASNHHNA------------GFTDDERAKFSRLLD 181
Query: 191 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 250
G L D++RFLH E + D WS + R RIDYF+VSE+L++RI +G
Sbjct: 182 CGYL-DSFRFLHPE-ERDAYSWWSYRTKARERNVGWRIDYFVVSEKLRERI-----RGAS 234
Query: 251 IELEGFYGSDHCPVSLELSEASSDSEK 277
I E GSDHCPV L+L+ +E+
Sbjct: 235 IHPE-IMGSDHCPVELDLAVCPEGAER 260
>gi|229174398|ref|ZP_04301930.1| Exodeoxyribonuclease [Bacillus cereus MM3]
gi|228608958|gb|EEK66248.1| Exodeoxyribonuclease [Bacillus cereus MM3]
Length = 252
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 128/232 (55%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R KW+ + ++ Q KP+++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMKWEDDFRAYIKQLDEKKPVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERMKDKITEAKINSEVM------GSDHCPVELHIN 251
>gi|218231608|ref|YP_002368543.1| exodeoxyribonuclease III [Bacillus cereus B4264]
gi|218159565|gb|ACK59557.1| exodeoxyribonuclease III [Bacillus cereus B4264]
Length = 252
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 131/235 (55%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L+ +++ +GR+I EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIE--EHDQEGRLITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F +IL+EG ID YR+L+ D + +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKFSSILEEG-FIDTYRYLY--PDQEGAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 122/229 (53%), Gaps = 32/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P V + LE+ +EP+GRVI EF+ FYL+ Y
Sbjct: 51 YHQYWNYAEKKGYSGTAVFTK--MEPLSVRYGLEE---DHEPEGRVITLEFQDFYLVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K + + R +W+ R + ++LQ G KP++ CGDLNV+H+EID+ +
Sbjct: 106 TPNA--KRDLSRLDYRLEWEDRFRNYLLQLDGKKPVVVCGDLNVAHQEIDLKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G GFT ER++ ++L G +D YR+ + ++ D WS P
Sbjct: 158 ---------KSNRGNSGFTPEEREKMTSLLAAG-FVDTYRYFYPDQ-TDAYTWWSFMPKV 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+ SE L ++ + + GSDHCPV LEL
Sbjct: 207 RERNIGWRIDYFLASERLAPALLRAGIDSQVM------GSDHCPVVLEL 249
>gi|354580157|ref|ZP_08999062.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
gi|353202588|gb|EHB68037.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
Length = 255
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 32/232 (13%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
+Y+ +W+ A K Y+GTA+ + +P V + +E+ EP+GR+I EF+ FYL+N
Sbjct: 50 DYRQYWNYAQKKGYSGTAVFTR--LEPLSVRYGIEEDE---EPEGRIITLEFQHFYLVNV 104
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN K + + R +W++R + ++ Q KP+I CGDLNV+H+EID+ +
Sbjct: 105 YTPNA--KRDLSRLSYRLEWEERFRRYLQQLDAVKPVIICGDLNVAHQEIDLKNA----- 157
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
K + G GFT+ ER + +L G ID++RF + ++ D WS
Sbjct: 158 ----------KSNLGNSGFTLEERGKMTDLLAAG-FIDSFRFFYPDR-TDVYSWWSYMAK 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ R RIDYF+VS L ++++ E+ H + GSDHCPV L +S+
Sbjct: 206 VRERNIGWRIDYFLVSARLSEKLVDAEIDCHVL------GSDHCPVRLTVSK 251
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 123/229 (53%), Gaps = 32/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
YQ +W+ A+ K Y+GTA+ + P V + LE+ + EP+GRVI EFE FYL+N Y
Sbjct: 51 YQQYWNYAEKKGYSGTAVFTR--IAPLSVRYGLEEDS---EPEGRVITLEFEDFYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K + + R +W++R + ++LQ KP+I CGDLNV+H+EID+ +
Sbjct: 106 TPNA--KRDLSRLDYRLEWEERFRTYLLQLDERKPVIVCGDLNVAHQEIDLKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G GFT+ ER + +L G ID++R + ++ D WS
Sbjct: 158 ---------KSNHGNSGFTLEERGKMTDLLAAG-FIDSFRHFYPDR-TDVYSWWSYMAKV 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+ S L +++ E+ H + GSDHCPVSL L
Sbjct: 207 RERNIGWRIDYFLTSARLAEKLKDAEIDCHVL------GSDHCPVSLTL 249
>gi|423458084|ref|ZP_17434881.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
gi|401148468|gb|EJQ55961.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
Length = 252
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 128/232 (55%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYAYWNYAVKKGYSGTAIFSKK--EPLAVTYGL--GIEEHDQEGRVITLEFEDFYIITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R KW+ + ++ Q K P+++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMKWEDDFRAYIKQLDKKKPVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTRILEEG-FIDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERMKDKITEAKINSEVM------GSDHCPVELHIN 251
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 123/229 (53%), Gaps = 32/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
YQ +W+ A+ K Y+GTA+ + P V + LE+ + EP+GRVI EFE FYL+N Y
Sbjct: 51 YQQYWNYAEKKGYSGTAVFTR--IAPLSVRYGLEEDS---EPEGRVITLEFEGFYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K + + R +W++R + ++LQ KP+I CGDLNV+H+EID+ +
Sbjct: 106 TPNA--KRDLSRLDYRLEWEERFRTYLLQLDERKPVIVCGDLNVAHQEIDLKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G GFT+ ER + +L G ID++R + ++ D WS
Sbjct: 158 ---------KSNHGNSGFTLEERGKMTDLLAAG-FIDSFRHFYPDR-TDVYSWWSYMAKV 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+ S L +++ E+ H + GSDHCPVSL L
Sbjct: 207 RERNIGWRIDYFLTSARLAEKLKDAEIDCHVL------GSDHCPVSLTL 249
>gi|423635487|ref|ZP_17611140.1| exodeoxyribonuclease [Bacillus cereus VD156]
gi|401278238|gb|EJR84174.1| exodeoxyribonuclease [Bacillus cereus VD156]
Length = 252
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 130/235 (55%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L+ +++ +GR+I EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIE--EHDQEGRLITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKFSCILEEG-FIDTYRYLY--PDQEDAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|226467620|emb|CAX69686.1| APEX nuclease [Schistosoma japonicum]
Length = 319
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 125/247 (50%), Gaps = 29/247 (11%)
Query: 24 REEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALKYEP 82
+E K L + S +YQ +WS AD + YAGTAL K PKKV++ + + ++
Sbjct: 98 QETKCPLHKIPSEAKLPSYQSFWSSADKAGYAGTALFSK--IAPKKVTYGIGRKV--HDE 153
Query: 83 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 141
+GRVI AEF+ FYL+ Y PN G + R ++WD E++ + + KP+I CGDL
Sbjct: 154 EGRVITAEFDRFYLVTAYVPNAGQGLARLPY-REKEWDPDFLEYLRKLDATKPVIVCGDL 212
Query: 142 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 201
NV+HEEID++ P+ + GFT ER F +L LID YR
Sbjct: 213 NVAHEEIDLARPD---------------TNHKTAGFTDQERSGFTKLLSSANLIDTYRHF 257
Query: 202 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 261
+ ++ F WS + R+DYF+VS+ + + E++ G GSDH
Sbjct: 258 YPDRREAYSF-WSYRTGARLINNGWRLDYFLVSQRILANVGDQEIRC------GVTGSDH 310
Query: 262 CPVSLEL 268
CPV L L
Sbjct: 311 CPVVLYL 317
>gi|228922454|ref|ZP_04085756.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|423581952|ref|ZP_17558063.1| exodeoxyribonuclease [Bacillus cereus VD014]
gi|228837168|gb|EEM82507.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|401212831|gb|EJR19572.1| exodeoxyribonuclease [Bacillus cereus VD014]
Length = 252
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 130/235 (55%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L+ +++ +GR+I EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIE--EHDQEGRLITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKFSCILEEG-FIDTYRYLY--PDQEDAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSERMKDQITEAKINTEVM------GSDHCPVELHIN 251
>gi|229197850|ref|ZP_04324566.1| Exodeoxyribonuclease [Bacillus cereus m1293]
gi|228585568|gb|EEK43670.1| Exodeoxyribonuclease [Bacillus cereus m1293]
Length = 252
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 129/232 (55%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K+ +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFSKE--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYIITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKKPVIFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +KD+I A ++ + GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERMKDQITAAKINSEVM------GSDHCPVELHIN 251
>gi|229191862|ref|ZP_04318833.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
gi|228591624|gb|EEK49472.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
Length = 252
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 129/235 (54%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L+ +++ +GR+I EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLDIE--EHDQEGRLITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F IL+EG D YR+L+ D + +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKFSCILEEG-FTDTYRYLY--PDQESAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 127/230 (55%), Gaps = 31/230 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y+ +W+ A+ K Y+GTA+ K+ +P S+ L +++ +GRVI E++ FYL+
Sbjct: 47 LEGYEQYWNYAEKKGYSGTAVFTKE--KPLSASYGL--NIEEHDKEGRVITLEYDDFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ KEE + R +W+ + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KEELARLEYRMEWEDAFRAYLKKLEKNKPVIVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER +F +L G ID YR+ + +K+ + WS
Sbjct: 158 ------------KTNRKNPGFSDEERAKFSELLASG-FIDTYRYFYPDKEGAYSW-WSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ + RIDYF++SEELKD++++ E+ + GSDHCPV L
Sbjct: 204 FNARTKNAGWRIDYFVISEELKDKLVSAEIHNEIL------GSDHCPVEL 247
>gi|365155344|ref|ZP_09351722.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
gi|363628500|gb|EHL79253.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
Length = 254
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 135/262 (51%), Gaps = 37/262 (14%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE+ D +E KL K Y +W+ A+ K Y+GTA+ K+ +P V +
Sbjct: 24 QEVDADIFCVQETKL--QSGQIELDLKGYHQYWNYAEKKGYSGTAVFTKE--EPLSVHYG 79
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 131
L ++ EP+GR+I EF FYL+N Y PN+ + + R +W+ RI+ +++
Sbjct: 80 L--GDVENEPEGRIITLEFPKFYLVNVYTPNS--QRDLARLPYRLEWEDRIRSYLIDLDK 135
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP++ CGDLNV+H+EID+ +P K + G GFT ER + +L
Sbjct: 136 DKPVLLCGDLNVAHQEIDLRNP---------------KSNQGNSGFTKEERAKMSELLNA 180
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGH 249
G ID +R+ + EK + ++W + I K R + + RIDYFI S+ L + I E+ H
Sbjct: 181 G-FIDTFRYFYPEK--EGAYTW-WSYINKARERNIGWRIDYFIASKRLANIIKNAEIHSH 236
Query: 250 GIELEGFYGSDHCPVSLELSEA 271
GSDHCP+ LEL +
Sbjct: 237 ------IMGSDHCPIVLELDSS 252
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|438003872|ref|YP_007273615.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|432180666|emb|CCP27639.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 251
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y+ +W+ A K Y+GTA+ K P V++ ++ +++ +GRVI EFE FY +
Sbjct: 47 LEGYEQYWNYAVKKGYSGTAVFTK--ISPLSVAYGIDIE--EHDAEGRVITLEFENFYFV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + R KW+ +E++++ G KP+I CGD NV+H+EID+ +P
Sbjct: 103 NVYVPNS--QRGLTRLDYRMKWEDDFREYLIKLDGIKPVICCGDKNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER++ +L G IDA+R+L+ +K D WS
Sbjct: 158 ------------KSNRKNAGFTDEERQKMTELLNSG-FIDAFRYLYPDKK-DAYTWWSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYFIVSE LKD+I E+ H + GSDHCPV L++
Sbjct: 204 FKAREKNVGWRIDYFIVSERLKDKIKDVEIHSHVM------GSDHCPVLLDI 249
>gi|229031365|ref|ZP_04187367.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
gi|228729930|gb|EEL80908.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
Length = 252
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K+ +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFSKQ--EPLSVTYGL--GIEEHDQEGRVITVEFEGFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTRILEEG-FIDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERMKDKITEAKINSEVM------GSDHCPVELHIN 251
>gi|49478354|ref|YP_037804.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301055229|ref|YP_003793440.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|423550511|ref|ZP_17526838.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
gi|49329910|gb|AAT60556.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|300377398|gb|ADK06302.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|401190127|gb|EJQ97177.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
Length = 252
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 129/232 (55%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYIITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K + R KW+ + ++ + K +++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLEYRMKWEDDFRAYIKRLDEKKSVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +KD+I A ++ + GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERMKDQITAAKINSEVM------GSDHCPVELHIN 251
>gi|30263740|ref|NP_846117.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47529159|ref|YP_020508.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186585|ref|YP_029837.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|65321063|ref|ZP_00394022.1| COG0708: Exonuclease III [Bacillus anthracis str. A2012]
gi|118478961|ref|YP_896112.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|165872421|ref|ZP_02217056.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167639873|ref|ZP_02398142.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170706859|ref|ZP_02897317.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|177652038|ref|ZP_02934584.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190568466|ref|ZP_03021373.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|196034121|ref|ZP_03101531.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196038388|ref|ZP_03105697.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|196044665|ref|ZP_03111900.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|218904866|ref|YP_002452700.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225865717|ref|YP_002751095.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227813360|ref|YP_002813369.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916370|ref|ZP_04079939.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228928786|ref|ZP_04091820.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935036|ref|ZP_04097866.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228947401|ref|ZP_04109692.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229092775|ref|ZP_04223913.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|229123254|ref|ZP_04252458.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|229185967|ref|ZP_04313138.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|229603277|ref|YP_002867975.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|254721165|ref|ZP_05182956.1| exodeoxyribonuclease III [Bacillus anthracis str. A1055]
gi|254735775|ref|ZP_05193481.1| exodeoxyribonuclease III [Bacillus anthracis str. Western North
America USA6153]
gi|254751095|ref|ZP_05203134.1| exodeoxyribonuclease III [Bacillus anthracis str. Vollum]
gi|254759412|ref|ZP_05211437.1| exodeoxyribonuclease III [Bacillus anthracis str. Australia 94]
gi|376267630|ref|YP_005120342.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|386737557|ref|YP_006210738.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|421510574|ref|ZP_15957465.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
gi|30258384|gb|AAP27603.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47504307|gb|AAT32983.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180512|gb|AAT55888.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|118418186|gb|ABK86605.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|164711859|gb|EDR17401.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167512274|gb|EDR87651.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170128277|gb|EDS97146.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|172082407|gb|EDT67472.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190560470|gb|EDV14448.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|195993195|gb|EDX57153.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196024700|gb|EDX63372.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|196030796|gb|EDX69394.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|218539943|gb|ACK92341.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225789176|gb|ACO29393.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227006454|gb|ACP16197.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597519|gb|EEK55168.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|228660030|gb|EEL15666.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|228690573|gb|EEL44354.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|228812254|gb|EEM58584.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228824606|gb|EEM70408.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830871|gb|EEM76474.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843280|gb|EEM88359.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229267685|gb|ACQ49322.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|364513430|gb|AEW56829.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|384387409|gb|AFH85070.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|401819394|gb|EJT18573.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
Length = 252
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 129/232 (55%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYIITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K + R KW+ + ++ + K +++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLEYRMKWEDDFRAYIKRLDEKKSVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +KD+I A ++ + GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERMKDQITAAKINSEVM------GSDHCPVELHIN 251
>gi|423401446|ref|ZP_17378619.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
gi|401654436|gb|EJS71979.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
Length = 252
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R KW+ + ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTRILEEG-FIDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +K++I E+ + GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERMKNQITEAEINSEVM------GSDHCPVELHIN 251
>gi|423385244|ref|ZP_17362500.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|423528399|ref|ZP_17504844.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
gi|401635300|gb|EJS53055.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|402452062|gb|EJV83881.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
Length = 252
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 129/235 (54%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GR+I EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F IL+EG +D YR+L+ D + +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKFSCILEEG-FVDTYRYLY--PDQEGAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|423477848|ref|ZP_17454563.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
gi|402428773|gb|EJV60865.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
Length = 252
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFSKK--KPLSVTYGL--GIEEHDQEGRVITLEFEDFYIITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R KW+ + ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTRILEEG-FIDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +K++I E+ + GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERMKNQITEAEINSEVM------GSDHCPVELHIN 251
>gi|229111211|ref|ZP_04240765.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|229146311|ref|ZP_04274682.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|296504242|ref|YP_003665942.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|423585849|ref|ZP_17561936.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|423641177|ref|ZP_17616795.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|423649605|ref|ZP_17625175.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|423656600|ref|ZP_17631899.1| exodeoxyribonuclease [Bacillus cereus VD200]
gi|228636944|gb|EEK93403.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|228672205|gb|EEL27495.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|296325294|gb|ADH08222.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|401233195|gb|EJR39691.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|401280238|gb|EJR86160.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|401282885|gb|EJR88782.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|401290341|gb|EJR96035.1| exodeoxyribonuclease [Bacillus cereus VD200]
Length = 252
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 132/235 (56%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GR+I EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P+
Sbjct: 104 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPK-- 159
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
N+E+ PGF+ ER++F IL+EG ID YR+L+ + + +SW
Sbjct: 160 ----------SNREN---PGFSDEEREKFSCILEEG-FIDTYRYLY--PNQEGAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|337746485|ref|YP_004640647.1| ExoA protein [Paenibacillus mucilaginosus KNP414]
gi|336297674|gb|AEI40777.1| ExoA [Paenibacillus mucilaginosus KNP414]
Length = 259
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 122/242 (50%), Gaps = 32/242 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ +Y +W+ A+ K Y+GTA+ K +P V + LE+ + EP+GR+I EF+ FYL+
Sbjct: 47 YPDYHQYWNYAEKKGYSGTAVFTK--VKPLSVRYGLEEDS---EPEGRIITLEFDGFYLV 101
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN K + + R +W+ R + ++ KP+I CGDLNV+HEEID+ +
Sbjct: 102 TVYTPNA--KRDLSRLDYRLEWEDRFRRYIAGLDAVKPVILCGDLNVAHEEIDLKNA--- 156
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + G GFT ER++ +L G ID +R + E+ D WS
Sbjct: 157 ------------KGNRGNSGFTAEERQKMTDLLGAG-FIDTFRHFYPEQ-TDAYTWWSNM 202
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSE 276
P + R RIDYF+ S L + ++ H + GSDHCPV L L+E +
Sbjct: 203 PKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL------GSDHCPVVLTLAEVPQAAA 256
Query: 277 KR 278
R
Sbjct: 257 AR 258
>gi|30021833|ref|NP_833464.1| exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|229129016|ref|ZP_04257989.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
gi|29897389|gb|AAP10665.1| Exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|228654253|gb|EEL10118.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
Length = 252
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 132/235 (56%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GR+I EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P+
Sbjct: 104 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPK-- 159
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
N+E+ PGF+ ER++F IL+EG ID YR+L+ + + +SW
Sbjct: 160 ----------SNREN---PGFSDEEREKFSCILEEG-FIDTYRYLY--PNQEGAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSEGMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|320163204|gb|EFW40103.1| APEX nuclease [Capsaspora owczarzaki ATCC 30864]
Length = 429
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 115/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
Y W+S YAGT + K QP +VSF L +++ +GRVI AEF FYL+ Y
Sbjct: 230 YGYWYSAQKRGYAGTGMYSKT--QPIRVSFGLN--VPEHDTEGRVITAEFADFYLVTAYV 285
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+G K E + R+ WD + ++L KP++ CGDLNV+H EID+ +P
Sbjct: 286 PNSGQKLE--TLPYRQTWDVAFRTYLLSLDAKKPVVLCGDLNVAHNEIDLKNP------- 336
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GFT ER+ F IL +D++R L+ E+ +S+ N
Sbjct: 337 --------KTNKRSAGFTPQEREGFTTILGT-EFVDSFRVLYPEESAYSFWSYRHNSRAL 387
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
G R+DYF+VS+ + +++ YGSDHCP+ L LS
Sbjct: 388 NVG--WRLDYFVVSQRFMQSVADSQIRSQ------VYGSDHCPIVLHLS 428
>gi|16800960|ref|NP_471228.1| hypothetical protein lin1894 [Listeria innocua Clip11262]
gi|422416297|ref|ZP_16493254.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
gi|16414395|emb|CAC97124.1| lin1894 [Listeria innocua Clip11262]
gi|313623313|gb|EFR93545.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
Length = 251
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 125/239 (52%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ K +P V + L +++ +GRVI EFE
Sbjct: 45 LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEHDTEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
FY++ Y PN+ + E R ++ I E+V KP++ CGDLNV+HEEID+
Sbjct: 98 DFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L G ID++R+ + D+ +
Sbjct: 156 NP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 198 SWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|47568231|ref|ZP_00238934.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228986876|ref|ZP_04147003.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|47555059|gb|EAL13407.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228772825|gb|EEM21264.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 252
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYIITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKKPVIFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG ID YR+L+ + + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PNQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|379720396|ref|YP_005312527.1| ExoA protein [Paenibacillus mucilaginosus 3016]
gi|386722997|ref|YP_006189323.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
gi|378569068|gb|AFC29378.1| ExoA [Paenibacillus mucilaginosus 3016]
gi|384090122|gb|AFH61558.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
Length = 259
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 120/235 (51%), Gaps = 32/235 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ +Y +W+ A+ K Y+GTA+ K +P V + LE+ + EP+GR+I EF+ FYL+
Sbjct: 47 YPDYHQYWNYAEKKGYSGTAVFTK--VKPLSVRYGLEEDS---EPEGRIITLEFDGFYLV 101
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN K + + R +W+ R + ++ KP+I CGDLNV+HEEID+ +
Sbjct: 102 TVYTPNA--KRDLSRLDYRLEWEDRFRRYIAGLDAVKPVILCGDLNVAHEEIDLKNA--- 156
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + G GFT ER++ +L G ID +R + E+ D WS
Sbjct: 157 ------------KGNRGNSGFTAEERQKMTDLLGAG-FIDTFRHFYPEQ-TDAYTWWSNM 202
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
P + R RIDYF+ S L + ++ H + GSDHCPV L L+E
Sbjct: 203 PKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL------GSDHCPVVLTLAEV 251
>gi|345018486|ref|YP_004820839.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033829|gb|AEM79555.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
Length = 257
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 127/231 (54%), Gaps = 31/231 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K ++P V++ + +++ +GRVI E+E FYL+NTY
Sbjct: 53 YYAFWNFAEKKAYSGTAVFTK--YKPLSVNYGI--GIPQHDNEGRVITLEYEKFYLVNTY 108
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + R +W++ + ++L+ S KP+I CGDLNV+H+EID+ +P +A
Sbjct: 109 TPNS--QRGLTRLSYRMEWEEDFRNYLLKLDSVKPIILCGDLNVAHKEIDIKNP---SAN 163
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+ N GFT ER++ +L G ID +R+ + K D WS
Sbjct: 164 RRNA------------GFTDEEREKMTMLLNSG-FIDTFRYFYPHKK-DAYTWWSYMRNA 209
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ + RIDYFIVS+ LKD +I E+ + GSDHCPV LE+ +
Sbjct: 210 REKNIGWRIDYFIVSQRLKDYLIDAEIHSDVM------GSDHCPVVLEIDD 254
>gi|228959948|ref|ZP_04121613.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|423628823|ref|ZP_17604572.1| exodeoxyribonuclease [Bacillus cereus VD154]
gi|228799691|gb|EEM46643.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|401268368|gb|EJR74416.1| exodeoxyribonuclease [Bacillus cereus VD154]
Length = 252
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 129/235 (54%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GR+I EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F IL+EG ID YR+L+ + + +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKFSCILEEG-FIDTYRYLY--PNQEGAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|23097966|ref|NP_691432.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
gi|22776190|dbj|BAC12467.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
Length = 269
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 131/259 (50%), Gaps = 33/259 (12%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE+ D +E KL Y +W+ A+ K Y+GTA+ K ++P V +
Sbjct: 24 QEMGADFFCIQESKL--QEGQIQLDLDGYYQYWNYAERKGYSGTAIFTK--WEPLHVFYG 79
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 131
++ YEP+GR+I E+E+FYL+N Y PN+ K + + R +W+ R+ +++ + +
Sbjct: 80 IDSN--NYEPEGRIITLEYESFYLVNVYTPNS--KRDLTRLEDRLEWEDRLFDYLQKLNK 135
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KPL++CGDLNV+H EID+ + +K + G GFT ER + +L
Sbjct: 136 KKPLVYCGDLNVAHHEIDLRN---------------DKTNHGNSGFTKEERSKMSRLLDA 180
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 251
G +D R H E D D WS + R RIDYFIVSE+L + E+ +
Sbjct: 181 G-FVDTLRHFHPEAD-DIFTWWSYMKTIRERNIGWRIDYFIVSEQLIPALKKSEVHSSVL 238
Query: 252 ELEGFYGSDHCPVSLELSE 270
GSDHCP+ L + E
Sbjct: 239 ------GSDHCPIGLVIDE 251
>gi|398816273|ref|ZP_10574926.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
gi|398032975|gb|EJL26295.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
Length = 254
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 122/229 (53%), Gaps = 32/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ + +P V + LE+ +EP+GRVI EF+ FYL+ Y
Sbjct: 52 YHQYWNYAEKKGYSGTAVFTR--MEPLSVRYGLEE---DHEPEGRVITLEFQDFYLVTVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K + + R +W+ R + ++LQ KP++ CGDLNV+H+EID+ +
Sbjct: 107 TPNA--KRDLSRLDYRLEWEDRFRNYLLQLDAKKPVVVCGDLNVAHQEIDLKNA------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++ ++L G +D YR+ + ++ D WS P
Sbjct: 159 ---------KSNRNNSGFTPEEREKMTSLLAAG-FVDTYRYFYPDQ-TDAYTWWSFMPKV 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+ SE L A + G GI+ + GSDHCPV LE
Sbjct: 208 RERNIGWRIDYFLASERL-----APSLLGAGIDSQVL-GSDHCPVVLEF 250
>gi|326390442|ref|ZP_08212000.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392939538|ref|ZP_10305182.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
gi|325993560|gb|EGD51994.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392291288|gb|EIV99731.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 257
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 129/240 (53%), Gaps = 31/240 (12%)
Query: 33 ALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 91
L + Y +W+ A+ K Y+GTA+ K ++P V++ + +++ +GRVI E+
Sbjct: 44 GLEELNLEGYYAFWNFAEKKAYSGTAVFTK--YKPLSVNYGI--GIPQHDNEGRVITLEY 99
Query: 92 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 150
E FYL+NTY PN+ + R +W++ + ++L+ S KP+I CGDLNV+H+EID+
Sbjct: 100 EKFYLVNTYTPNS--QRGLTRLSYRMEWEEDFRNYLLKLDSVKPIILCGDLNVAHKEIDI 157
Query: 151 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 210
+P +A + N GFT ER++ +L G ID +R+ + K D
Sbjct: 158 KNP---SANRRNA------------GFTDEEREKMTMLLNSG-FIDTFRYFYPHKK-DAY 200
Query: 211 FSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
WS + + RIDYFIVS+ LKD +I E+ + GSDHCPV LE+ +
Sbjct: 201 TWWSYMRNAREKNIGWRIDYFIVSQRLKDYLIDAEIHSDVM------GSDHCPVVLEIDD 254
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 129/234 (55%), Gaps = 39/234 (16%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ +P VS+ + + EP+GR + EFE FYLLN Y
Sbjct: 50 YHQYWNYAEKKGYSGTAVFTKE--KPLYVSYGI--AGRETEPEGRSLTLEFENFYLLNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K + R +W+ I+E++L+ KP+I CGDLNV+H +ID+ +
Sbjct: 106 TPNS--KRDLARLPYRLEWEDEIREYILELEQKKPVILCGDLNVAHLDIDLKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+ + G GFT ER + ++L EG +D++R+L+ E++ + WS
Sbjct: 158 ---------RSNRGNSGFTDEERGKMTSLLSEG-FVDSFRYLYPEQEGAYTW-WSYMAKV 206
Query: 220 KYRGKRMRIDYFIVSEELKDRI----IACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYFIVS++LK+ I I C++ GSDHCP+ LE++
Sbjct: 207 RERNIGWRIDYFIVSDKLKEHILDSKIYCDIM----------GSDHCPIMLEMA 250
>gi|422413323|ref|ZP_16490282.1| exodeoxyribonuclease III, partial [Listeria innocua FSL S4-378]
gi|313618350|gb|EFR90386.1| exodeoxyribonuclease III [Listeria innocua FSL S4-378]
Length = 253
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 125/239 (52%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ K +P V + L +++ +GRVI EFE
Sbjct: 47 LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEHDTEGRVITLEFE 99
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
FY++ Y PN+ + E R ++ I E+V KP++ CGDLNV+HEEID+
Sbjct: 100 DFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLK 157
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L G ID++R+ + D+ +
Sbjct: 158 NP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAY 199
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 200 SWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 252
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V + L + EP+GR++ E+E FYL+
Sbjct: 47 LEGYHQYWNYAIKKGYSGTAVFTKK--EPLSVRYGLGDN--ETEPEGRILTLEYEGFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + + R +W++RI+E++L KP+I CGDLNV+H EID+ +
Sbjct: 103 NVYTPNS--QRDLARLPYRLEWEERIREYLLGLDQIKPVIMCGDLNVAHFEIDLKNA--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + G GFT ER + +L G +DA+R+ + E + + WS
Sbjct: 158 ------------KSNRGNSGFTDEERGKMTRLLGSG-FVDAFRYKYPEAEGAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYFIVSE+LK+RI+ ++ GSDHCPV+LEL
Sbjct: 204 AKVRERNIGWRIDYFIVSEKLKERILDSQIHCD------IMGSDHCPVALEL 249
>gi|423100921|ref|ZP_17088626.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
gi|370792563|gb|EHN60427.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
Length = 256
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 125/239 (52%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ K +P V + L +++ +GRVI EFE
Sbjct: 50 LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEHDTEGRVITLEFE 102
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
FY++ Y PN+ + E R ++ I E+V KP++ CGDLNV+HEEID+
Sbjct: 103 DFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLK 160
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L G ID++R+ + D+ +
Sbjct: 161 NP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAY 202
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 203 SWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 255
>gi|282877708|ref|ZP_06286523.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
gi|281300280|gb|EFA92634.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
Length = 249
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 125/233 (53%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ YQ +W+ AD K Y+GTA+ K P V++ L +++ +GRVI E + F+L+
Sbjct: 47 FEGYQSYWNYADKKGYSGTAIYTKHT--PLNVTYGLGID--EHDHEGRVITMEMDDFFLI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++E R +W+ + +V+Q KP+I CGDLNV+HEEID+ +P
Sbjct: 103 TVYVPNS--QDELRRLDYRMQWEDDFRAYVMQLDAIKPVIICGDLNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G +D +R L+ E+ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEEREKMTILLNNG-FVDTFRHLYPEQ---VTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF++SE LK+R++ ++ + GSDHCPV LEL
Sbjct: 202 RFRAREKNAGWRIDYFLISERLKERLVDAKIHTEIL------GSDHCPVELEL 248
>gi|324515683|gb|ADY46281.1| Recombination repair protein 1 [Ascaris suum]
Length = 378
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 118/218 (54%), Gaps = 27/218 (12%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
+AG LL K+ +P KV LE + +GR+I+AE++ FYL+N Y PN+G +
Sbjct: 186 HAGVILLSKQ--KPIKVQTKLENVPEELGVEGRLIVAEYDKFYLINAYVPNSG--RGLVN 241
Query: 113 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+R+ WD +++ Q + K +I+ GDLNV+HEEID+++P+ N+
Sbjct: 242 LAKRKIWDDFFIDYIKQLDASKAVIYAGDLNVAHEEIDLANPK------------TNRNK 289
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
GFT ER F +L+ G +D YR LH +K F WS + R+DYF
Sbjct: 290 TA--GFTDQERGDFTRLLQAG-FVDVYRSLHPDKTGAYTF-WSTMHNARATNIGWRLDYF 345
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+VSE L D+++ CE+ GSDHCP++L+++
Sbjct: 346 VVSERLMDKVVKCEINSR------VMGSDHCPLTLQIN 377
>gi|421858846|ref|ZP_16291099.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
gi|410831608|dbj|GAC41536.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
Length = 257
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 34/232 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A+ K Y+GTA+ + +P+ V + +E+ A EP+GR+I EFE+FYL+ Y
Sbjct: 51 YRKYWNYAEKKGYSGTAIFTR--IEPQSVRYGMEEDA---EPEGRIITLEFESFYLVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K + + + R +W++R + ++ + KP+I CGDLNV+H+EID+ +
Sbjct: 106 TPNA--KRDLSRLEYRLEWEERFRRYLQELDAHKPVIVCGDLNVAHQEIDLKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + G GFT ER + +L+ G ID +R H+ D ++ WS P
Sbjct: 158 ---------KSNQGNSGFTPEERDKMTRLLEAG-FIDTFR--HRYPDRTDAYTWWSFMPK 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ R RIDYF+VS L D I ++ GSDHCPV LE+ +
Sbjct: 206 VRERNIGWRIDYFLVSARLNDFIKDAKIDA------AITGSDHCPVILEMED 251
>gi|323344424|ref|ZP_08084649.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
gi|323094551|gb|EFZ37127.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
Length = 249
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 124/234 (52%), Gaps = 34/234 (14%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
F YQ +W+ AD K Y+GTA+ K+ P V++ + +++ +GRVI E E F+L
Sbjct: 46 AFNGYQSYWNYADKKGYSGTAIFTKQT--PLNVTYGMGID--EHDHEGRVITLETENFFL 101
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN+ ++E + R +W+ + ++L KP+I CGD+NV+HEEID+ +P
Sbjct: 102 VTVYTPNS--QDELRRLEYRMRWEDDFKAYLLALDARKPVIVCGDMNVAHEEIDIKNP-- 157
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 214
K + GFT ER++ +L G ID +R L+ E+ +S WS
Sbjct: 158 -------------KTNRRNAGFTDEEREKMTELLAGG-FIDTFRTLYPEQ---VTYSWWS 200
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF++SE LK+RI ++ YGSDHCP+ L+L
Sbjct: 201 YRFRARERNTGWRIDYFLISERLKERIADAKIH------TDIYGSDHCPIELDL 248
>gi|228940815|ref|ZP_04103375.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973735|ref|ZP_04134313.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980291|ref|ZP_04140602.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|384187741|ref|YP_005573637.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676060|ref|YP_006928431.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452200118|ref|YP_007480199.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779396|gb|EEM27652.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|228785981|gb|EEM33982.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818829|gb|EEM64894.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941450|gb|AEA17346.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175189|gb|AFV19494.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452105511|gb|AGG02451.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 252
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 129/235 (54%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GR+I EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F IL+EG +D YR+L+ + + +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKFTCILEEG-FVDTYRYLY--PNQEGAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|402574713|ref|YP_006624056.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
gi|402255910|gb|AFQ46185.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
Length = 251
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 127/237 (53%), Gaps = 33/237 (13%)
Query: 38 PF--KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
PF + Y +W+ A K Y+GTA+ KK +P K+ + + + +++ +GRVI EFE
Sbjct: 44 PFNLEGYYQYWNFAQKKGYSGTAIFTKK--EPMKICYGIGQE--EHDKEGRVITLEFEKH 99
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
Y++ Y PN+ + + R KW++ +F+ KP+I+CGDLNV+HEEID+ +P
Sbjct: 100 YVVTVYTPNS--QRGLARLEYRMKWEEEFLKFIKDLEKNKPVIFCGDLNVAHEEIDLKNP 157
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+++ GF++ ER +FG I+K G ID +R+ + +K + W
Sbjct: 158 ------------SSNRKN---AGFSMEERNKFGEIIKSG-FIDTFRYFYPDK-TNAYTWW 200
Query: 214 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
S + RIDYF VSE LKDR+ A + GSDHCPV LE+ E
Sbjct: 201 SYMFNARVNNAGWRIDYFCVSEILKDRLKA------AVIYNDVMGSDHCPVGLEMEE 251
>gi|297618884|ref|YP_003706989.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
gi|297377861|gb|ADI36016.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
Length = 249
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 33/229 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A K Y+GTA+ K+ +PK +++ ++ + +GRVI AE++ +YL+N Y
Sbjct: 50 YKQYWNTASKKGYSGTAIFTKQ--KPKNITYGMDNFP---DEEGRVITAEYDNYYLVNVY 104
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + R KWD + E++L + KPLI+CGDLNV+H+EID+ +P
Sbjct: 105 TPNS--QRGLTRLDYRMKWDTKFLEYLLSLNESKPLIFCGDLNVAHKEIDLKNP------ 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER F + E +D +R +KE D +S+ N
Sbjct: 157 ---------KTNKKHAGFTEEERMGFDKYV-ENNFVDTFRLFNKESDNYTWWSYMHNARA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K G RIDYF S + + + + L+ YGSDHCP+ LEL
Sbjct: 207 KNIG--WRIDYFCTSNSIVNYV------KKSVILDKIYGSDHCPIKLEL 247
>gi|423418359|ref|ZP_17395448.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
gi|401106632|gb|EJQ14593.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
Length = 252
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 125/231 (54%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE F+++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFHMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R KW+ + ++ + K P+I+CGDLNVSH+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMKWEDDFRAYIKRLDKKKPVIFCGDLNVSHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG +D YRFL+ E+ + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTKILEEG-FVDTYRFLYPEQ--EGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + R+DYF+ SE LK +I ++ GSDHCPV L +
Sbjct: 207 A-RAKNIGWRLDYFVTSERLKHKITDAKINSE------IMGSDHCPVELHM 250
>gi|403234513|ref|ZP_10913099.1| exodeoxyribonuclease III [Bacillus sp. 10403023]
Length = 251
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 128/236 (54%), Gaps = 35/236 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P VS+ + E +GR++ EFE FYL+
Sbjct: 47 LEGYHQFWNYAIKKGYSGTAVFTKK--KPLSVSYGVADE--NEEDEGRILTLEFEDFYLI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + + R W+ RI+E+++Q + KP++ CGDLNV+H +ID+ +
Sbjct: 103 NVYTPNS--QRDLARLHFRLNWEDRIREYLIQLNKLKPIVLCGDLNVAHSDIDLKNA--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + G GFT ER + +L G ID++R+ + DM ++W +
Sbjct: 158 ------------KSNRGNSGFTEEERGKMTDLLNSG-FIDSFRYFY--PDMTDKYTW-WS 201
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ R K + RIDYFIVSEELK R+ ++ H + GSDHCPV L++ +
Sbjct: 202 YMRNVREKNIGWRIDYFIVSEELKHRLKDSQIHSHVM------GSDHCPVVLQIQK 251
>gi|290893090|ref|ZP_06556079.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404408223|ref|YP_006690938.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
gi|290557450|gb|EFD90975.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404242372|emb|CBY63772.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
Length = 251
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 37/273 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSK-YAGTAL 58
+ AA K + +E+ D +E KL + L P +K+Y W+ A K Y+GTA+
Sbjct: 11 LRAAVKKGFLEYFEEVDSDIFCLQETKLQEGQIELDLPAYKDY---WNYAVKKGYSGTAI 67
Query: 59 LVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 118
K +P V + L +++ +GRVI EFE F+++ Y PN+ + E R
Sbjct: 68 FTK--VEPLSVQYGL--GVPEHDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMT 121
Query: 119 WDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGF 177
++ I E+V KP++ CGDLNV+HEEID+ +P K + GF
Sbjct: 122 FEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNP---------------KTNRKNAGF 166
Query: 178 TIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEE 236
+ ER +F A L G ID++R+ + D+ +S WS + R RIDYF+VSE
Sbjct: 167 SDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSER 223
Query: 237 LKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
LKD+++ ++ + GSDHCPV LEL+
Sbjct: 224 LKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|423395948|ref|ZP_17373149.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|423406828|ref|ZP_17383977.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
gi|401653690|gb|EJS71234.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|401660118|gb|EJS77601.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
Length = 252
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 128/234 (54%), Gaps = 35/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVAYGL--GIEEHDQEGRVITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEEKPVIFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F +L+EG +D YR+L+ D + +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKFTRVLEEG-FVDTYRYLY--PDQEGAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+G R K + R+DYF+VSE +K++I ++ + GSDHCPV L +
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSERMKEQITDAKINSEVM------GSDHCPVELHI 250
>gi|229018928|ref|ZP_04175771.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|229025172|ref|ZP_04181596.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|423390009|ref|ZP_17367235.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
gi|228736105|gb|EEL86676.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|228742371|gb|EEL92528.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|401640925|gb|EJS58651.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
Length = 252
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 125/231 (54%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE F+++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIDEHDQEGRVITLEFEDFHMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R KW+ + ++ + K P+I+CGDLNVSH+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMKWEDDFRAYIKRLDKKKPVIFCGDLNVSHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG +D YRFL+ E+ + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTKILEEG-FVDTYRFLYPEQ--EGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + R+DYF+ SE LK +I ++ GSDHCPV L +
Sbjct: 207 A-RAKNIGWRLDYFVTSERLKHKITDAKINSE------IMGSDHCPVELHM 250
>gi|229157316|ref|ZP_04285394.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
gi|228626043|gb|EEK82792.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
Length = 252
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 127/231 (54%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYIITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R KW+ + ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKKPVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG ID YR+L+ + + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PNQEGAYSWWSYRMG 206
Query: 220 -KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 207 ARVKNIGWRLDYFVVSERMKDQITEAKINSEVM------GSDHCPVELHIN 251
>gi|423518373|ref|ZP_17494854.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
gi|401161100|gb|EJQ68468.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
Length = 252
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 127/232 (54%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W+ + ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERVDYRMEWEDDFRAYIKRLDEKKPVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG +D YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTRILEEG-FVDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +KD+I ++ GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERMKDKITEAKINSE------IMGSDHCPVELHIN 251
>gi|254479049|ref|ZP_05092404.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
gi|214035005|gb|EEB75724.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
Length = 258
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 126/231 (54%), Gaps = 31/231 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K ++P VS+ + ++ +GRVI E+E F+L+NTY
Sbjct: 53 YYAFWNFAEKKGYSGTAVFTK--YKPLSVSYGIGTP--HHDKEGRVITLEYEKFFLVNTY 108
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + R +W++ + ++L+ S KP+I CGDLNV+H+EID+ +P AA
Sbjct: 109 TPNS--QRGLTRLDYRMQWEEDFRSYLLKLDSLKPVILCGDLNVAHQEIDIKNP---AAN 163
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+ N GFT ER++ +L G ID +R+ + +K D WS
Sbjct: 164 RRNA------------GFTDEEREKMTILLNSG-FIDTFRYFYPDKK-DAYTWWSYMHNA 209
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ + R+DYFIVSE LKD +I ++ + GSDHCPV L + E
Sbjct: 210 REKNIGWRVDYFIVSERLKDYLIDSQIHSEVM------GSDHCPVVLIVKE 254
>gi|46908012|ref|YP_014401.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094151|ref|ZP_00231871.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217964070|ref|YP_002349748.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|226224385|ref|YP_002758492.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826392|ref|ZP_05231393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|254933631|ref|ZP_05266990.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|255521086|ref|ZP_05388323.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-175]
gi|300766428|ref|ZP_07076383.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|386008552|ref|YP_005926830.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|386027157|ref|YP_005947933.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|386732521|ref|YP_006206017.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281392|ref|YP_006682290.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404287210|ref|YP_006693796.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405750132|ref|YP_006673598.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|405753007|ref|YP_006676472.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|405755941|ref|YP_006679405.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|406704564|ref|YP_006754918.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|417315430|ref|ZP_12102109.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|422809864|ref|ZP_16858275.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|424714659|ref|YP_007015374.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823542|ref|ZP_18248555.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|46881282|gb|AAT04578.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017476|gb|EAL08289.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217333340|gb|ACK39134.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|225876847|emb|CAS05556.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293585194|gb|EFF97226.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|293595632|gb|EFG03393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|300512852|gb|EFK39944.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|307571362|emb|CAR84541.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|328466425|gb|EGF37573.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|332312222|gb|EGJ25317.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|336023738|gb|AEH92875.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|378752065|gb|EHY62652.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|384391279|gb|AFH80349.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219332|emb|CBY70696.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|404222207|emb|CBY73570.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|404225141|emb|CBY76503.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|404228027|emb|CBY49432.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404246139|emb|CBY04364.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361594|emb|CBY67867.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|424013843|emb|CCO64383.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
Length = 251
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 125/239 (52%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ K +P V + L +++ +GRVI EFE
Sbjct: 45 LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEHDTEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
F+++ Y PN+ + E R ++ I E+V KP++ CGDLNV+HEEID+
Sbjct: 98 EFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L G ID++R+ + D+ +
Sbjct: 156 NP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 198 SWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|340382054|ref|XP_003389536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Amphimedon queenslandica]
Length = 372
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 29/227 (12%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GT L K+ +P V++ + K++ +GRVI AEFE FY + Y
Sbjct: 169 YHSYWNSAEQKGYSGTGLYSKE--EPINVTYGI--GIPKHDNEGRVITAEFEKFYFVTAY 224
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN G K + S+ R +WD ++++ KP++ CGDLNV+H+EID+++P
Sbjct: 225 IPNAGDKLKRLSY-RVGEWDPDFKKYLKSLDENKPVVLCGDLNVAHKEIDIANP------ 277
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER+ F ++L++ +LID++R L+ +K + WS
Sbjct: 278 ---------KTNQRSAGFTKEERESFSSLLEDNKLIDSFRDLYPDKKEAYSY-WSYRSNA 327
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ K R+DYF+VSE LK + C+ I YGSDHCP+ L
Sbjct: 328 RKNNKGWRLDYFLVSERLKAAV--CD----SIIRSQVYGSDHCPIVL 368
>gi|16803822|ref|NP_465307.1| hypothetical protein lmo1782 [Listeria monocytogenes EGD-e]
gi|16411236|emb|CAC99860.1| lmo1782 [Listeria monocytogenes EGD-e]
Length = 251
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 126/239 (52%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ K +P V + L +++ +GRVI EFE
Sbjct: 45 LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPEHDTEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVS 151
F+++ Y PN+ + E R ++ I E+V + KP++ CGDLNV+HEEID+
Sbjct: 98 EFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDNTKPVVLCGDLNVAHEEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L G ID++R+ + D+ +
Sbjct: 156 NP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 198 SWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|404413860|ref|YP_006699447.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|404239559|emb|CBY60960.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|441474667|emb|CCQ24421.1| Exodeoxyribonuclease [Listeria monocytogenes N53-1]
Length = 251
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 125/239 (52%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ K +P V + L +++ +GRVI EFE
Sbjct: 45 LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPEHDTEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
F+++ Y PN+ + E R ++ I E+V KP++ CGDLNV+HEEID+
Sbjct: 98 EFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L G ID++R+ + D+ +
Sbjct: 156 NP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYFIVSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 198 SWWSYRMNARARNTGWRIDYFIVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|52141752|ref|YP_085078.1| exodeoxyribonuclease III [Bacillus cereus E33L]
gi|51975221|gb|AAU16771.1| exodeoxyribonuclease III [Bacillus cereus E33L]
Length = 252
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 129/234 (55%), Gaps = 35/234 (14%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
++Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++
Sbjct: 49 EDYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEGFYIIT 104
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 105 LYTPNA--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP---- 158
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW
Sbjct: 159 -----------KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLY--PDQEGAYSWWSYR 204
Query: 218 IGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +K++I ++ + GSDHCPV L ++
Sbjct: 205 MGA-RAKNIGWRLDYFVVSERIKNQIKDAKINSEVM------GSDHCPVELHIN 251
>gi|374604001|ref|ZP_09676972.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
gi|374390357|gb|EHQ61708.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
Length = 264
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 130/246 (52%), Gaps = 34/246 (13%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
++Y+ +W+ A+ K Y+GTA+ + +P V + +E+ EP+GR+I EFE+FYL+
Sbjct: 49 ESYRQYWNYAEKKGYSGTAVFTR--IEPLSVRYGMEEDR---EPEGRMITLEFESFYLVT 103
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN K + + + R +W++R + ++ + KP+I CGDLNV+H+E+D+ +
Sbjct: 104 VYTPNA--KRDLSRLEYRLEWEERFRRYLQELDARKPVIVCGDLNVAHQEMDLKNA---- 157
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGN 216
K + G GFT ER + +L G D +R H+ D ++ WS
Sbjct: 158 -----------KSNHGNSGFTPEERDKMTRLLDAG-FTDTFR--HRYPDRTDAYTWWSFM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSE 276
P + R RIDYF+VS LK+ I E+ GSDHCPV LE+ + +S
Sbjct: 204 PKVRERNIGWRIDYFLVSARLKEYIKDAEIDA------AITGSDHCPVILEMEDLPVESP 257
Query: 277 KREKKN 282
KR + N
Sbjct: 258 KRGEHN 263
>gi|254829588|ref|ZP_05234275.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284802226|ref|YP_003414091.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284995368|ref|YP_003417136.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|386054035|ref|YP_005971593.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
gi|258602005|gb|EEW15330.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284057788|gb|ADB68729.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284060835|gb|ADB71774.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|346646686|gb|AEO39311.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
Length = 251
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 126/239 (52%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ K +P V + L +++ +GRVI EFE
Sbjct: 45 LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPEHDTEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVS 151
F+++ Y PN+ + E R ++ I E+V + KP++ CGDLNV+HEEID+
Sbjct: 98 EFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDNTKPVVLCGDLNVAHEEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L G ID++R+ + D+ +
Sbjct: 156 NP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 198 SWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|417317886|ref|ZP_12104489.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
gi|328473849|gb|EGF44679.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
Length = 225
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 125/239 (52%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ K +P V + L +++ +GRVI EFE
Sbjct: 19 LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GVPEHDTEGRVITLEFE 71
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
F+++ Y PN+ + E R ++ I E+V KP++ CGDLNV+HEEID+
Sbjct: 72 EFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLK 129
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L G ID++R+ + D+ +
Sbjct: 130 NP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAY 171
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 172 SWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 224
>gi|407473575|ref|YP_006787975.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
gi|407050083|gb|AFS78128.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y+ +W+ A K Y+GTA+ K+ +P +V + L +++ +GRVI EFE FYL+
Sbjct: 47 LEGYEQYWNYAVKKGYSGTAIFTKQ--KPIEVKYGL--GIEEHDQEGRVITLEFEDFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + E R KW+ +E++ KP+I CGDLNV+H+EID+ +P
Sbjct: 103 NVYTPNS--QSELARLDYRMKWEDIFREYLKDLDNIKPVILCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER + +L+ G D++R+L+ EK+ + WS
Sbjct: 158 ------------KTNRKNAGFTDEERNKMTELLESG-FTDSFRYLYPEKEGSYSW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFIVSE++KD+I ++ + GSDHCPV LEL
Sbjct: 204 RKARENNSGWRIDYFIVSEKMKDKIKDAQIHSN------IMGSDHCPVMLEL 249
>gi|47097522|ref|ZP_00235061.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|254914076|ref|ZP_05264088.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|254938390|ref|ZP_05270087.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|386044090|ref|YP_005962895.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|386047434|ref|YP_005965766.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|386050759|ref|YP_005968750.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404284278|ref|YP_006685175.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404411083|ref|YP_006696671.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|405758833|ref|YP_006688109.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
gi|47014105|gb|EAL05099.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|258611002|gb|EEW23610.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|293592096|gb|EFG00431.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|345534425|gb|AEO03866.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|345537324|gb|AEO06764.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|346424605|gb|AEO26130.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404230909|emb|CBY52313.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|404233780|emb|CBY55183.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404236715|emb|CBY58117.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
Length = 251
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 125/239 (52%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ K +P V + L +++ +GRVI EFE
Sbjct: 45 LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPEHDTEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
F+++ Y PN+ + E R ++ I E+V KP++ CGDLNV+HEEID+
Sbjct: 98 EFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L G ID++R+ + D+ +
Sbjct: 156 NP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 198 SWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|373107112|ref|ZP_09521412.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
gi|371652051|gb|EHO17477.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
Length = 254
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 137/271 (50%), Gaps = 35/271 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSK-YAGTAL 58
+ AA K EL D +E KL + L P + +Y W+ A+ K Y+G A+
Sbjct: 14 LRAAAGKTFFDAFHELDADIFCIQESKLQEGQIELDLPGYYDY---WNYAEKKGYSGVAM 70
Query: 59 LVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 118
K+ +P VS+ L +++ +GRVI EF +Y+L Y PN+ + E R +
Sbjct: 71 FTKE--KPVNVSYGL--GIPEHDKEGRVITLEFPDYYVLTCYTPNS--QNELKRLDYRME 124
Query: 119 WDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGF 177
W+ ++ KPLI+CGDLNV+HEEID+ +P N+ + GF
Sbjct: 125 WEDAFFAYIKGLDQKKPLIYCGDLNVAHEEIDLKNP------------STNRRN---AGF 169
Query: 178 TIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 237
T ER++ +L G +D++R+LH E + D WS + R RIDYFIVSE L
Sbjct: 170 TDEEREKMTRVLTNG-FVDSFRYLHPE-EKDAYSWWSYRMKARERNVGWRIDYFIVSERL 227
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
KDRI QG I E GSDHCPV L++
Sbjct: 228 KDRI-----QGASIHSE-ILGSDHCPVELKI 252
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 138/260 (53%), Gaps = 38/260 (14%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE+ D +E KL + Y +W+ A K Y+GTA+ K+ +P VSF
Sbjct: 24 QEVTADVFCIQETKL--QEGQIDLQLEGYYQYWNYAVKKGYSGTAVFTKQ--KPLSVSFG 79
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 131
++K + E +GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S
Sbjct: 80 VDK---ELEDEGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLKKLNS 134
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
K +I CGDLNV+H EID+ +P+ PN+ G GFTI ER + +L
Sbjct: 135 RKAVILCGDLNVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLLAS 179
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGH 249
G +D +R+L+ + + ++W + + K R + + RIDYFIVSE +KD I + H
Sbjct: 180 G-FLDTFRYLYPNQ--EGAYTW-WSYMNKVRERNIGWRIDYFIVSERIKDVIQEAAIHPH 235
Query: 250 GIELEGFYGSDHCPVSLELS 269
+ GSDHCPV LEL+
Sbjct: 236 VM------GSDHCPVMLELN 249
>gi|423488860|ref|ZP_17465542.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
gi|423494585|ref|ZP_17471229.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|423498625|ref|ZP_17475242.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|401151646|gb|EJQ59092.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|401159283|gb|EJQ66668.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|402433215|gb|EJV65269.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
Length = 252
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R KW+ + ++ + + K +++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKKSVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F L+EG +D YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTRTLEEG-FVDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +KD+I ++ GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERMKDKITEAKINSE------IMGSDHCPVELHIN 251
>gi|169334284|ref|ZP_02861477.1| hypothetical protein ANASTE_00682 [Anaerofustis stercorihominis DSM
17244]
gi|169259001|gb|EDS72967.1| exodeoxyribonuclease III [Anaerofustis stercorihominis DSM 17244]
Length = 251
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 126/230 (54%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W A+ K Y+GTA K +P V LE+ K+ +GRVI AE+E FYL+N Y
Sbjct: 50 YEEYWDYAEKKGYSGTATFSK--IKPISVKTGLEEE--KFSKEGRVITAEYENFYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ +++ + KP+I CGDLNV+H EID+ +P+
Sbjct: 106 TPNS--QNELKRLDYRMEWEDYFADYLCELDKVKPVIMCGDLNVAHREIDLKNPK----- 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
NK++ GFTI ER + ++LK G +D+YR+L+ D++ ++ WS
Sbjct: 159 -------TNKKN---AGFTIEERDKMTSLLKRG-FVDSYRYLY--PDIEGVYTWWSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFIVS+ +KD+I ++ GSDHCPV L++
Sbjct: 206 ARKNNAGWRIDYFIVSDRIKDKIKDVKI------FSDVMGSDHCPVLLDI 249
>gi|163941424|ref|YP_001646308.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|229012920|ref|ZP_04170085.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|423661424|ref|ZP_17636593.1| exodeoxyribonuclease [Bacillus cereus VDM022]
gi|163863621|gb|ABY44680.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|228748174|gb|EEL98034.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|401301465|gb|EJS07054.1| exodeoxyribonuclease [Bacillus cereus VDM022]
Length = 252
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFEDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R KW+ + ++ + + K +++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKKSVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F L+EG +D YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTRTLEEG-FVDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +KD+I ++ GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERMKDKITEAKINSE------IMGSDHCPVELHIN 251
>gi|325182155|emb|CCA16608.1| exodeoxyribonuclease putative [Albugo laibachii Nc14]
Length = 375
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 120/230 (52%), Gaps = 33/230 (14%)
Query: 45 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 103
+WS A K YAGTA+ K +P +V L+ + L +GR + EFE F+L++TY PN
Sbjct: 173 YWSCAHKKGYAGTAVCSK--LEPLQVRSHLDDSTLG-STEGRFLALEFEKFWLVHTYVPN 229
Query: 104 NGWKEEENSFQRRRKWDKRIQEFVLQC----SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
G K E R +WD + + LQ S K +IWCGDLNV+H++ID+ P+
Sbjct: 230 AGMKLERLG-DRTTQWDAVLLQ-TLQSLEKESEKGVIWCGDLNVAHQDIDIHDPK----- 282
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
N + PGFT AER FG LK G +D +R H EK +S+ N
Sbjct: 283 --------NNRN-KSPGFTDAERNNFGETLKTG-FVDTFRHFHPEKQQFTYWSYRFN--A 330
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R K R+DYF+VSE L ++ A ++ EG GSDH PV LS
Sbjct: 331 RTRNKGWRLDYFVVSERLMAQVKASFVR------EGVKGSDHVPVGAILS 374
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 122/232 (52%), Gaps = 32/232 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K +P V + +E+ + E +GR++ EF+ FYL+N Y
Sbjct: 51 YSQYWNYAVKKGYSGTAVFTK--VEPLTVRYGIEEDS---EDEGRILTLEFDRFYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K + + R +W+ R + ++L+ KP+I CGDLNV+H+EID+ +
Sbjct: 106 TPNA--KRDLSRLGYRLEWEDRFRAYLLELDAQKPVIVCGDLNVAHQEIDLKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G GFT ER + +L+ G ID +R LH E+D D WS P
Sbjct: 158 ---------KSNHGNSGFTTEERGKMTDLLESG-FIDTFRHLHPERD-DAFSWWSFMPKV 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
+ R RIDYF+ S L A + GI+ GSDHCPV ++L +A
Sbjct: 207 RERNIGWRIDYFLASARL-----APHVTDAGID-SAILGSDHCPVMVQLEDA 252
>gi|423598952|ref|ZP_17574952.1| exodeoxyribonuclease [Bacillus cereus VD078]
gi|401237222|gb|EJR43679.1| exodeoxyribonuclease [Bacillus cereus VD078]
Length = 252
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFEDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R KW+ + ++ + + K +++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKKSVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F L+EG +D YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREQFTRTLEEG-FVDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +KD+I ++ GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERMKDKITEAKINSE------IMGSDHCPVELHIN 251
>gi|427406978|ref|ZP_18897183.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
gi|425707453|gb|EKU70497.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
Length = 250
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 135/271 (49%), Gaps = 33/271 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA K ++ + L D +E K+ +A L P ++ Y ++S Y+GTA+
Sbjct: 11 LRAALKKGFMESFKALDADAFCLQETKMQEGQAILDLPGYEQY--FYSAEKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ QP V++ + A +++ +GRVI EFE YL+ Y PN K R W
Sbjct: 69 TR--VQPLSVAYGI--GAPEHDDEGRVITMEFEELYLVTVYTPNA--KRALERLDYRMAW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + F+L K P++ CGDLNV+H+EID+ +P K + GFT
Sbjct: 123 EDAFRAFLLNLRAKKPVVVCGDLNVAHKEIDLKNP---------------KSNRHNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER +FG +L G +D +R L+ ++ + WS + RIDYF+VSEEL+
Sbjct: 168 DEERGKFGELLAAG-FVDTFRALYPDRRGAYTW-WSYLRHARETNAGWRIDYFLVSEELR 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R+ A E+ +GSDHCPVSL LS
Sbjct: 226 GRVAAAEIHAD------IFGSDHCPVSLTLS 250
>gi|423616001|ref|ZP_17591835.1| exodeoxyribonuclease [Bacillus cereus VD115]
gi|401260538|gb|EJR66711.1| exodeoxyribonuclease [Bacillus cereus VD115]
Length = 252
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 127/235 (54%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R +W+ + ++ Q KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMEWEDDFRAYIKQLDEKKPVIFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F IL+EG +D YR L+ D + +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKFTRILEEG-FVDTYRHLY--PDQEGAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VS+ +K +I ++ I GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSDRIKGQITDAKINSEII------GSDHCPVELHIN 251
>gi|254854529|ref|ZP_05243877.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
gi|258607929|gb|EEW20537.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
Length = 251
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ K +P V + +++ +GRVI EFE
Sbjct: 45 LDLPAYKDY---WNYAVKKGYSGTAIFTK--VEPLSVQYGF--GVPEHDTEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
F+++ Y PN+ + E R ++ I E+V KP++ CGDLNV+HEEID+
Sbjct: 98 EFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L G ID++R+ + D+ +
Sbjct: 156 NP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYF+VSE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 198 SWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL------GSDHCPVELELN 250
>gi|423469951|ref|ZP_17446695.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
gi|423558712|ref|ZP_17535014.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|401190966|gb|EJQ98002.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|402437203|gb|EJV69227.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
Length = 252
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 125/231 (54%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ +K +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTRK--EPIAVTYGL--GIEEHDQEGRVITLEFEDFYIITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG +D YRFL+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTNILEEG-FVDTYRFLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + R+DYF+ SE LK +I ++ + GSDHCPV L +
Sbjct: 207 A-RAKNIGWRLDYFVTSERLKHKITDAKINSEVM------GSDHCPVELHI 250
>gi|229162671|ref|ZP_04290628.1| Exodeoxyribonuclease [Bacillus cereus R309803]
gi|228620553|gb|EEK77422.1| Exodeoxyribonuclease [Bacillus cereus R309803]
Length = 252
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 128/235 (54%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE F+++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFHMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F +L+EG ID YR+L+ D +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKFTCVLEEG-FIDTYRYLY--PDQKGAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +K++I ++ + GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSERMKNQITEAKINSEVM------GSDHCPVELHVN 251
>gi|423452962|ref|ZP_17429815.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
gi|401139521|gb|EJQ47083.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
Length = 252
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 125/231 (54%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ +K +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTRK--EPIAVTYGL--GIEEHDQEGRVITLEFEDFYIITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG +D YRFL+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTNILEEG-FVDTYRFLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + R+DYF+ SE LK +I ++ + GSDHCPV L +
Sbjct: 207 A-RAKNIGWRLDYFVTSERLKHKITDAKINSEVM------GSDHCPVELHI 250
>gi|384046695|ref|YP_005494712.1| exodeoxyribonuclease III [Bacillus megaterium WSH-002]
gi|345444386|gb|AEN89403.1| Exodeoxyribonuclease III [Bacillus megaterium WSH-002]
Length = 253
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 134/258 (51%), Gaps = 34/258 (13%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE+ D +E KL + Y +W+ A K Y+GTA+ K+ +P VS+
Sbjct: 24 QEVNADVFCIQETKL--QEGQIDLQLEGYYQYWNYAVKKGYSGTAVFTKQ--KPLSVSYG 79
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 131
++K + E +GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S
Sbjct: 80 VDKES---EDEGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLNKLNS 134
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
K +I CGDLNV+H EID+ +P+ PN+ G GFTI ER + +L
Sbjct: 135 RKAVILCGDLNVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLLAS 179
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 251
G +D +R+L+ ++ + WS + R RIDYFIVSE +KD I + H +
Sbjct: 180 G-FLDTFRYLYPNQE-EAYTWWSYMNKVRERNIGWRIDYFIVSERIKDVIQEATIHPHVM 237
Query: 252 ELEGFYGSDHCPVSLELS 269
GSDHCPV LEL+
Sbjct: 238 ------GSDHCPVMLELN 249
>gi|315303668|ref|ZP_07874193.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627958|gb|EFR96566.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
Length = 251
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 127/239 (53%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ KK +P V + L +++ +GRVI EFE
Sbjct: 45 LDLPGYKDY---WNYAVKKGYSGTAIFTKK--EPLSVQYGLGIE--EHDTEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
F+++ Y PN+ + E R ++ I +V + KP+I CGDLNV+HEEID+
Sbjct: 98 NFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVILCGDLNVAHEEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L+ G +D++R+ + D++ +
Sbjct: 156 NP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDSFRYFY--PDLEDAY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYF+VSE LKD ++ ++ + GSDHCPV LEL+
Sbjct: 198 SWWSYRMNARARNTGWRIDYFVVSERLKDNLVDAKIHPDVL------GSDHCPVELELN 250
>gi|326790354|ref|YP_004308175.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
gi|326541118|gb|ADZ82977.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
Length = 251
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 125/231 (54%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTAL KK +P VS+ L +++ +GRVI AEFE Y++ Y
Sbjct: 50 YYQYWNYAQKKGYSGTALFSKK--EPLSVSYGL--GIAEHDTEGRVITAEFEEAYVVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN + E R W+ + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 106 TPNA--QNELARIDYRMAWEDAFKAYLKKLEENKPVIICGDLNVAHQEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + G GF+ ER +FG +L+ G ID +R+ + D++ +S WS
Sbjct: 158 ---------KTNRGNAGFSDEERGKFGELLEAG-FIDTFRYFY--PDLEGAYSWWSYRFK 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYF+ SE LKD+++ G I+ E GSDHCPV LE++
Sbjct: 206 AREKNTGWRIDYFLASEVLKDKLV-----GAAIDAE-ILGSDHCPVILEIN 250
>gi|66817330|ref|XP_642518.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
gi|161784257|sp|P51173.2|APEA_DICDI RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=Class II apurinic/apyrimidinic(AP)-endonuclease
gi|60470608|gb|EAL68586.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
Length = 361
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 28/229 (12%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
K Y+ + AD K + GT +L KK +P ++F + K++ +GRVI E++ FY++N
Sbjct: 154 KGYEYHFIEADQKGHHGTGVLTKK--KPNAITFGI--GIAKHDNEGRVITLEYDQFYIVN 209
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFA 157
TY PN G + + R ++WD Q ++ + + KP+IWCGDLNV+H EID+ +P
Sbjct: 210 TYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNP---- 265
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
K + GFTI ER F L++G +D+YR + K+ F WS
Sbjct: 266 -----------KTNKKSAGFTIEERTSFSNFLEKG-YVDSYRHFNPGKEGSYTF-WSYLG 312
Query: 218 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
G+ + R+DYF+VS+ L D I + GSDHCP+ +
Sbjct: 313 GGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSV-----MGSDHCPIGV 356
>gi|326202355|ref|ZP_08192224.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987473|gb|EGD48300.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 123/232 (53%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y+ +W+ A K Y+GTA+ K K VS S +++ +GRVI EFE F+L+
Sbjct: 48 IEGYEHYWNYAVKKGYSGTAIFTK----IKPVSSSCGIGIEEHDNEGRVITLEFEEFFLV 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ K E + R KW+ +E++ Q KP+I CGD+NV+H+EID+ +P
Sbjct: 104 NVYTPNS--KRELERLEYRMKWEDDFREYLKQLEQTKPVIICGDMNVAHQEIDLKNPR-- 159
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
NK GFT+ ER++F +L+ G +D +R L+ +K + WS
Sbjct: 160 ----------SNKR---SAGFTMEEREKFSQLLEHG-FVDTFRMLYPDKTGAYTW-WSYM 204
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VS LKDRI A E+ + GSDHCPV L +
Sbjct: 205 FKSREKNAGWRIDYFCVSGALKDRIEAAEIYSDTM------GSDHCPVGLTI 250
>gi|402303594|ref|ZP_10822685.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
gi|400378209|gb|EJP31070.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
Length = 250
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 138/274 (50%), Gaps = 39/274 (14%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA K ++ +EL D +E K+ +A L P ++ Y ++S Y+GTA+
Sbjct: 11 LRAALKKGFMESFKELDADAFCLQETKMQEGQAILDLPGYEQY--FYSAEKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---R 116
+ K +S + +++ +GRVI EF+ YL+ Y PN+ +N+ R R
Sbjct: 69 TR----VKPLSVARGIGIPQHDNEGRVITMEFDDLYLVTVYTPNS-----QNALARLDYR 119
Query: 117 RKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 175
W+ + F+L+ S KP++ CGDLNV+H EID+ +P K +
Sbjct: 120 MAWEDAFRAFLLELRSKKPVVVCGDLNVAHTEIDLKNP---------------KSNRRNA 164
Query: 176 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 235
GFT ER +FG +L G +D +R L+ +K + WS + RIDYF+VSE
Sbjct: 165 GFTDEERGKFGELLAAG-FVDTFRALYPDK-VGAYTWWSYLRHARETNAGWRIDYFLVSE 222
Query: 236 ELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
EL+ RI A E+ +GSDHCPVSL LS
Sbjct: 223 ELRGRIAAAEIHAD------IFGSDHCPVSLTLS 250
>gi|423367719|ref|ZP_17345151.1| exodeoxyribonuclease [Bacillus cereus VD142]
gi|401083372|gb|EJP91630.1| exodeoxyribonuclease [Bacillus cereus VD142]
Length = 252
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 126/231 (54%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W+ + ++ + KP+I+CGDLNV+H+E+D+ +P
Sbjct: 107 TPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F +L+EG ID YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTCVLEEG-FIDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + R+DYF++SE LK +I ++ + GSDHCPV L +
Sbjct: 207 A-RAKNIGWRLDYFVISERLKHKITDAKINSEVM------GSDHCPVELHI 250
>gi|116873216|ref|YP_849997.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742094|emb|CAK21218.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 251
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 123/234 (52%), Gaps = 33/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y+ +W+ A K Y+GTA+ K +P V + L +++ +GRVI EFE F+++
Sbjct: 47 LKAYKDYWNYAVKKGYSGTAIFTK--VEPLSVQYGL--GIPEHDTEGRVITLEFEAFFMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ + E R ++ I E++ KP++ CGDLNV+HEEID+ +P
Sbjct: 103 TVYTPNS--QAELKRLDYRMTFEDAILEYIKNLDKTKPVVLCGDLNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GF+ ER +F A L G ID++R+ + D+ +S WS
Sbjct: 158 ------------KTNRKNAGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYF+VS+ LKD+++ ++ + GSDHCPV LEL+
Sbjct: 203 RMNARARNTGWRIDYFVVSKRLKDKLVDAKIHSEVL------GSDHCPVELELN 250
>gi|320529778|ref|ZP_08030856.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
gi|320138017|gb|EFW29921.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
Length = 250
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 138/274 (50%), Gaps = 39/274 (14%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA K ++ +EL D +E K+ +A L P ++ Y ++S Y+GTA+
Sbjct: 11 LRAALKKGFMESFKELDADAFCLQETKMQEGQAILDLPGYEQY--FYSAEKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---R 116
+ K +S + +++ +GRVI EF+ YL+ Y PN+ +N+ R R
Sbjct: 69 TR----VKPLSVARGIGIPQHDNEGRVITMEFDDLYLVTVYTPNS-----QNALARLDYR 119
Query: 117 RKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 175
W+ + F+L+ S KP++ CGDLNV+H EID+ +P K +
Sbjct: 120 MAWEDAFRSFLLELRSKKPVVVCGDLNVAHTEIDLKNP---------------KSNRRNA 164
Query: 176 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 235
GFT ER +FG +L G +D +R L+ +K + WS + RIDYF+VSE
Sbjct: 165 GFTDEERGKFGELLAAG-FVDTFRALYPDK-VGAYTWWSYLRHARETNAGWRIDYFLVSE 222
Query: 236 ELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
EL+ RI A E+ +GSDHCPVSL LS
Sbjct: 223 ELRGRIAAAEIHAD------VFGSDHCPVSLTLS 250
>gi|392424943|ref|YP_006465937.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391354906|gb|AFM40605.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 253
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 128/233 (54%), Gaps = 31/233 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ KK QP SF + ++ +GR+I E++ FYL+N Y
Sbjct: 50 YTQYFNYAERKGYSGTAVFTKK--QPLTCSFGMGIPL--HDKEGRMITLEYDEFYLINLY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
APN+ + E + R W++ + +V S KP+I+CGDLNV+H+EID+ +P+ A
Sbjct: 106 APNS--QAELARLEYRLTWEEDFRRYVQTLNSHKPVIFCGDLNVAHQEIDLKNPQ---AN 160
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+ N GFT ER +F +L+ G ID +R+L+ E+ D WS
Sbjct: 161 RRNA------------GFTDEERLKFSELLESG-FIDTFRYLYPEQK-DSYSWWSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 272
+ R RIDYF +SE LKD + + E+ + GSDHCPV +E++ S
Sbjct: 207 RVRNAGWRIDYFCMSERLKDSLQSAEIYTSVL------GSDHCPVGIEVNSFS 253
>gi|288799645|ref|ZP_06405104.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
gi|288332893|gb|EFC71372.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
Length = 250
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 34/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y+ +W+ AD K Y+GTA+ K P V + + +++ +GRV+ EFE FYL+
Sbjct: 47 FEGYESYWNYADKKGYSGTAIYTKHS--PLSVQYGIGID--QHDHEGRVVTLEFEQFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++E R +W++ Q ++++ + KP++ CGD+NV+H+EID+ +P
Sbjct: 103 TVYTPNS--QDELKRLDYRMEWERDFQAYLVKLDASKPVVVCGDMNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G ID +R+L+ E + +S WS
Sbjct: 158 ------------KTNRRNAGFTDEEREKMTNLLDNG-FIDTFRYLYPE---EVTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYF++SE LK + ++ +GSDHCPV L+L+
Sbjct: 202 RFKAREKNTGWRIDYFLISERLKSNLTDAKIH------TDIFGSDHCPVELDLT 249
>gi|357614743|gb|EHJ69244.1| ap endonuclease [Danaus plexippus]
Length = 630
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 115/238 (48%), Gaps = 32/238 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W +D YAG + K V + L+ L E GR+I AE+E FYL+ TY
Sbjct: 422 YHAYWLSSDKDGYAGVGIYTTKLAM--NVQYGLQNEELDSE--GRIITAEYEQFYLICTY 477
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN G K S +R KW+ +E V KP+I CGD+NV+H EID+++P
Sbjct: 478 VPNAGRKLV--SLPKRLKWNDEFREHVKALDEKKPVIICGDMNVAHNEIDLTNP------ 529
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER +L +G +D +R H EK +S+ N
Sbjct: 530 ---------KTNKKNAGFTEEERAGMTELLGDG-FVDTFRHFHPEKVAYTFWSYMANSRA 579
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 277
K G R+DYFIVSE L I ++G YGSDHCP++L L S+D K
Sbjct: 580 KNVG--WRLDYFIVSERLLPSICDSSIRGE------VYGSDHCPIALYLHLTSADKPK 629
>gi|313895351|ref|ZP_07828908.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976246|gb|EFR41704.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 250
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 138/274 (50%), Gaps = 39/274 (14%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA K ++ +EL D +E K+ +A L P ++ Y ++S Y+GTA+
Sbjct: 11 LRAALKKGFMESFKELDADAFCLQETKMQEGQAILDLPGYEQY--FYSAEKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---R 116
+ K +S + +++ +GRVI EF+ YL+ Y PN+ +N+ R R
Sbjct: 69 TR----VKPLSVARGIGIPQHDNEGRVITMEFDDLYLVTVYTPNS-----QNALARLDYR 119
Query: 117 RKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 175
W+ + F+L+ S KP++ CGDLNV+H EID+ +P K +
Sbjct: 120 MAWEDAFRAFLLELRSKKPVVVCGDLNVAHTEIDLKNP---------------KSNRRNA 164
Query: 176 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 235
GFT ER +FG +L G +D +R L+ +K + WS + RIDYF+VSE
Sbjct: 165 GFTDEERGKFGELLAAG-FVDTFRALYPDK-VGAYTWWSYLRHARETNAGWRIDYFLVSE 222
Query: 236 ELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
EL+ RI A E+ +GSDHCPVSL LS
Sbjct: 223 ELRGRIAAAEIHAD------VFGSDHCPVSLTLS 250
>gi|228909564|ref|ZP_04073387.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
gi|228849853|gb|EEM94684.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
Length = 244
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 128/235 (54%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GR+I EFE FY++
Sbjct: 40 LEGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGL--GIEEHDQEGRLITLEFEDFYMI 95
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R KW+ + ++ + K +I+CGDLNV+H+EID+ +P
Sbjct: 96 TLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKKTVIFCGDLNVAHKEIDLKNP--- 150
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F IL+EG +D YR+L+ + + +SW
Sbjct: 151 ------------KSNRKNPGFSDEEREKFTCILEEG-FVDTYRYLY--PNQEGAYSWWSY 195
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VSE +KD+I ++ + GSDHCPV L ++
Sbjct: 196 RMGA-RAKNIGWRLDYFVVSERMKDQITEVKINSEVM------GSDHCPVELYIN 243
>gi|334319618|ref|XP_001379263.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Monodelphis domestica]
Length = 320
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 129/238 (54%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P YQ W S +D + Y+G LL ++C P V++ + + +++ +GRVI+AEFE
Sbjct: 110 LQDLPGLTYQYWSSPSDKEGYSGVGLLSRQC--PLSVTYGIGEE--EHDQEGRVIVAEFE 165
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVS 151
F L+ Y PN G + R++WD+ ++F+ S K PL+ CGDLNV+HEEID+
Sbjct: 166 AFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLSAKKPLVLCGDLNVAHEEIDLR 223
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L D++R L+ E F
Sbjct: 224 NPK------------GNKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPEAAYAYTF 268
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 269 -WTYMMNARAKNVGWRLDYFLLSQALLPALCDSKIRSKAL------GSDHCPITLLLA 319
>gi|373497233|ref|ZP_09587764.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
gi|404366853|ref|ZP_10972230.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|313690462|gb|EFS27297.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|371963724|gb|EHO81271.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
Length = 253
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 123/230 (53%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P +VS+ L +++ +GRVI E++ FY++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKK--KPIEVSYGL--GIEEHDKEGRVITLEYDDFYMITVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ +EE R W+ + +V++ KP+I CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QEELARLSYRMSWEDEFRNYVMKLDKLKPVIICGDLNVAHQEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GF+ ER +F +LK G +D++R + E + +S WS
Sbjct: 158 ---------KSNRKNAGFSDEERAKFTELLKNG-FVDSFRHFYPE--LTGAYSWWSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE LKD + E+ + GSDHCPV L+L
Sbjct: 206 ARKNNAGWRIDYFVVSERLKDIMEGAEIHNETL------GSDHCPVVLKL 249
>gi|291522762|emb|CBK81055.1| exodeoxyribonuclease III [Coprococcus catus GD/7]
Length = 258
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 124/231 (53%), Gaps = 31/231 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A+ K Y+GTA+ + +P V + ++ +++ +GRVI E+++FYL+N Y
Sbjct: 57 YEQYWNYAERKGYSGTAVFTR--IKPLSVRYGMD--IAEHDTEGRVITLEYDSFYLVNVY 112
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K+ R KW+ + ++ KP++ CGDLNV+HEEID+ +P
Sbjct: 113 TPNS--KDGLARLPYRMKWEDDFRNYLKTLEQTKPVVMCGDLNVAHEEIDLKNP------ 164
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER + +L G ID +R+ + +K + + WS
Sbjct: 165 ---------KTNRKNAGFSDEERAKMTELLAAG-FIDTFRYFYPDKTGEYSW-WSYRFNA 213
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ RIDYFIVS+ LK+R+I+ + + +GSDHCPV LEL E
Sbjct: 214 RKNNAGWRIDYFIVSDALKERLISASIH------QEIFGSDHCPVELELKE 258
>gi|289435119|ref|YP_003464991.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171363|emb|CBH27905.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 251
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 127/239 (53%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ KK +P V + L +++ +GRVI EFE
Sbjct: 45 LDLPAYKDY---WNYAVKKGYSGTAIFTKK--EPLSVQYGLGIE--EHDTEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
F+++ Y PN+ + E R ++ I +V + KP++ CGDLNV+HEEID+
Sbjct: 98 KFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVLCGDLNVAHEEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L+ G +D++R+ + D++ +
Sbjct: 156 NP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDSFRYFY--PDLEDAY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYF+VSE LKD ++ ++ + GSDHCPV LEL+
Sbjct: 198 SWWSYRMNARARNIGWRIDYFVVSERLKDNLVDAKIHPDVL------GSDHCPVELELN 250
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 127/232 (54%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y +W+ A+ K Y+GTA+ KK +P +V++ + +++ +GRVI EFE FY++
Sbjct: 47 FEGYYQYWNYAEKKGYSGTAIFTKK--EPLQVTYGM--GIEEHDKEGRVITLEFEDFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ + E R +W+ + F+ + KP++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--QNELARLSYRMEWEDEFRRFLKKLEETKPVVVCGDLNVAHKEIDLKNPN-- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
++N GFTI ER +F +L+ G ID +R+ + + MD WS
Sbjct: 159 -TNQMNA------------GFTIEERTKFSELLEAG-FIDTFRYFYPDA-MDMYSWWSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S+ L+ ++++ ++ + GSDHCP+ LE+
Sbjct: 204 FKAREKNTGWRIDYFLASQGLESKLVSAKIHSQIL------GSDHCPIELEI 249
>gi|229098205|ref|ZP_04229152.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|423441531|ref|ZP_17418437.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|423464605|ref|ZP_17441373.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|423533947|ref|ZP_17510365.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
gi|228685103|gb|EEL39034.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|402418192|gb|EJV50492.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|402420872|gb|EJV53143.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|402464166|gb|EJV95866.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
Length = 252
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ +KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFMKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W+ + ++ Q KP+++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMEWEDDFRTYIKQLDEKKPVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG +D YR L+ + + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTRILEEG-FVDTYRHLY--PNQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +K +I ++ GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERIKGQITDAKINSE------IMGSDHCPVELHIN 251
>gi|395502892|ref|XP_003755807.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Sarcophilus harrisii]
Length = 320
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P YQ W S D + Y+G LL ++C P V+F + + +++ +GRVI+AEFE
Sbjct: 110 LQDLPGLTYQYWSSPTDKEGYSGVGLLSRQC--PLNVTFGIGEE--EHDQEGRVIVAEFE 165
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVS 151
F L+ Y PN G + R++WD+ ++F+ + K PL+ CGDLNV+HEEID+
Sbjct: 166 AFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLNAKKPLVLCGDLNVAHEEIDLR 223
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L D++R L+ E F
Sbjct: 224 NPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPEAAYAYTF 268
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 269 -WTYMMNARAKNVGWRLDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLLLA 319
>gi|395502890|ref|XP_003755806.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Sarcophilus harrisii]
Length = 321
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P YQ W S D + Y+G LL ++C P V+F + + +++ +GRVI+AEFE
Sbjct: 111 LQDLPGLTYQYWSSPTDKEGYSGVGLLSRQC--PLNVTFGIGEE--EHDQEGRVIVAEFE 166
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVS 151
F L+ Y PN G + R++WD+ ++F+ + K PL+ CGDLNV+HEEID+
Sbjct: 167 AFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLNAKKPLVLCGDLNVAHEEIDLR 224
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L D++R L+ E F
Sbjct: 225 NPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPEAAYAYTF 269
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 270 -WTYMMNARAKNVGWRLDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLLLA 320
>gi|383810829|ref|ZP_09966315.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
gi|383356543|gb|EID34041.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
Length = 249
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y+ +W+ AD K Y+GTA+ K +P V++ + +++ +GRVI E + FYL+
Sbjct: 47 FPGYESYWNYADKKGYSGTAIFTKH--KPLSVTYGINID--EHDHEGRVITLEMDDFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++E + R KW++ Q ++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 103 TVYTPNS--QDELRRLEYRMKWEEDFQSYLHKLDETKPVIVCGDMNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G ID +R L+ E+ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEEREKMTELLNNG-FIDTFRTLYPEQ---VTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF++SE L+DR+I ++ + GSDHCP+ ++L
Sbjct: 202 RFRAREKNTGWRIDYFLISERLRDRLIDAKIHTETM------GSDHCPIEIDL 248
>gi|407706141|ref|YP_006829726.1| hypothetical protein MC28_2905 [Bacillus thuringiensis MC28]
gi|407383826|gb|AFU14327.1| Exodeoxyribonuclease [Bacillus thuringiensis MC28]
Length = 252
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++
Sbjct: 48 LEGYYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R +W+ + ++ Q KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMEWEDDFRAYIKQLDEKKPVIFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F IL+EG +D YR L+ + + +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKFTRILEEG-FVDTYRHLY--PNQEGAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYF+VS+ +K +I ++ I GSDHCPV L ++
Sbjct: 204 RMGA-RAKNIGWRLDYFVVSDRIKGQITDAKINSEII------GSDHCPVELHIN 251
>gi|423483329|ref|ZP_17460019.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
gi|401140880|gb|EJQ48435.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
Length = 252
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 128/234 (54%), Gaps = 35/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++
Sbjct: 48 LEGYYTYWNYALKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K R +W+ + ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 104 TLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVVFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++ +L+EG ID YR+L+ E+ + +SW
Sbjct: 159 ------------KSNRKNPGFSDEEREKITRVLEEG-FIDTYRYLYPEQ--EGAYSWWSY 203
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+G R K + R+DYFI+SE LK +I+ ++ + GSDHCPV L +
Sbjct: 204 RMGA-RAKNIGWRLDYFIISERLKHKILDAKINSEVM------GSDHCPVELHM 250
>gi|443711514|gb|ELU05263.1| hypothetical protein CAPTEDRAFT_159745 [Capitella teleta]
Length = 307
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 125/234 (53%), Gaps = 32/234 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W D Y+GT L K+ +P V++ ++K +++ +GRVI AEF+ FY +
Sbjct: 102 IEGYHAYWLSGDKDGYSGTGLYSKQ--EPLSVTYGIDKE--EHDKEGRVITAEFDKFYFV 157
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN G S+ R KWD +E++ K P++ CGDLNV+H+EID+++P
Sbjct: 158 TAYVPNAGRGLPRLSY-RSEKWDPDFREYLKNLDAKKPVVMCGDLNVAHKEIDIANP--- 213
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSG 215
K + GFT ER+ F +L+ G +DA+R L+ E+ + ++ G
Sbjct: 214 ------------KSNKKSAGFTPQERQGFSELLEAG-FVDAFRELYPEETKKYSYWTYMG 260
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
N GK G R+DYF+VSE++KD I ++ GSDHCPV L ++
Sbjct: 261 NARGKNVG--WRLDYFVVSEKIKDGICDSLIRSE------VMGSDHCPVVLLMN 306
>gi|429735837|ref|ZP_19269760.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156761|gb|EKX99382.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 250
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 135/271 (49%), Gaps = 35/271 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA K ++ +EL D +E K+ +A L P ++ Y ++S Y+GTA+
Sbjct: 11 LRAALKKGFMESFKELNADAFCLQETKMQEGQAILDLPGYEQY--FYSAEKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P VS+ + +++ +GRVI EFE YL+ Y PN+ K R W
Sbjct: 69 TR--LKPLSVSYGIGIE--EHDNEGRVITMEFEDVYLVTVYTPNS--KNGLLRLDYRMVW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + F+L K P++ CGDLNV+H EID+ +P K + GFT
Sbjct: 123 EDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP---------------KSNRRNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER +F +L G +D +R L+ D+ ++ WS + RIDYF+VSEEL
Sbjct: 168 DEERGKFTELLAAG-FVDTFRALY--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEEL 224
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+DRI A E+ +GSDHCPVSL L
Sbjct: 225 RDRIAAAEIHAD------VFGSDHCPVSLTL 249
>gi|299821801|ref|ZP_07053689.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
gi|299817466|gb|EFI84702.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
Length = 254
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 31/233 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A K Y+GTA+ K+ +P V + L + + +GRVI EF FY +
Sbjct: 48 LEGYHDYWNYAVKKGYSGTAVFTKE--EPLSVQYGLPEDV--HNQEGRVITLEFPAFYFV 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ + E R +W++ + ++ KP+++CGDLNV+H+EID+ +P
Sbjct: 104 TVYTPNS--QAELKRLDYRTEWEQAFADHIIALDKQKPVVFCGDLNVAHQEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER FG +L G +D +R+L+ E++ D WS
Sbjct: 159 ------------KTNRKNPGFSDQERAMFGQLLDNG-FVDTFRYLYPEQE-DAYSWWSYR 204
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYF+VS L D I + + GSDHCPV LE++
Sbjct: 205 MNARSRNVGWRIDYFVVSSRLSDSIQEARIHAEVL------GSDHCPVELEIA 251
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|424736313|ref|ZP_18164773.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|422949916|gb|EKU44289.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
Length = 251
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A K Y+GTA+ K P V + + A + +GR+I E++ FYL+N Y
Sbjct: 50 YEQYWNYAQKKGYSGTAIFTKH--TPLSVKYGV--GAEDSQDEGRIITLEYKNFYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAA 158
PN + + R +W+ R+ ++ L C KP+++CGDLNV+H EID+ +
Sbjct: 106 TPNA--QRDLARLPLRLQWEDRLANYLQELNCQ-KPVVYCGDLNVAHTEIDLKNA----- 157
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
K + G GFT ER +F A+L+ G +D++R+ H E + D WS
Sbjct: 158 ----------KSNIGNSGFTYEERAKFSALLESG-FVDSFRYKHPE-ETDHYTWWSYMNK 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VS +LK++I + + H GSDHCP+ L+L
Sbjct: 206 VRERNIGWRIDYFVVSNQLKEQIESATIHPH------IMGSDHCPIELQL 249
>gi|423611960|ref|ZP_17587821.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
gi|401246967|gb|EJR53311.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
Length = 252
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 125/231 (54%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V + L +++ +GRVI EF+ FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPISVMYGL--GIEEHDQEGRVITLEFDDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F +L+EG ID YR+L+ E+ + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTCVLEEG-FIDTYRYLYPEQ--EGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + R+DYF++SE LK +I ++ GSDHCPV L +
Sbjct: 207 A-RAKNIGWRLDYFVISERLKHKITDAKINSE------VTGSDHCPVELRM 250
>gi|229104299|ref|ZP_04234968.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|229117223|ref|ZP_04246601.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|423378475|ref|ZP_17355759.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
gi|423448243|ref|ZP_17425122.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|423540784|ref|ZP_17517175.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|423547021|ref|ZP_17523379.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|423623188|ref|ZP_17598966.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|228666123|gb|EEL21587.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|228678997|gb|EEL33205.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|401128837|gb|EJQ36520.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|401171972|gb|EJQ79193.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|401178742|gb|EJQ85915.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|401258965|gb|EJR65143.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|401635242|gb|EJS52998.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
Length = 252
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 125/232 (53%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W+ + ++ Q KP+++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMEWEDDFRTYIKQLDEKKPVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F IL+EG +D YR L+ + + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTRILEEG-FVDTYRHLY--PNQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +K +I ++ GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERIKGQITDAKINSE------IMGSDHCPVELHIN 251
>gi|20808602|ref|NP_623773.1| exonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|20517232|gb|AAM25377.1| Exonuclease III [Thermoanaerobacter tengcongensis MB4]
Length = 258
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 125/231 (54%), Gaps = 31/231 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K ++P VS+ + ++ +GRVI E++ F+L+N Y
Sbjct: 53 YYAFWNFAEKKGYSGTAVFTK--YKPLSVSYGIGTP--HHDKEGRVITLEYKKFFLVNAY 108
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + R +W++ + ++L+ S KP+I CGDLNV+H+EID+ +P AA
Sbjct: 109 TPNS--QRGLTRLNYRMEWEEDFRSYLLKLDSVKPVILCGDLNVAHQEIDIKNP---AAN 163
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+ N GFT ER++ +L G ID +R+ + +K D WS
Sbjct: 164 RRNA------------GFTDEEREKMTILLNSG-FIDTFRYFYPDKK-DAYTWWSYMHNA 209
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ + R+DYFIVSE LKD +I ++ + GSDHCPV L + E
Sbjct: 210 REKNIGWRVDYFIVSERLKDYLIDSQIHSEVM------GSDHCPVVLIVKE 254
>gi|309806468|ref|ZP_07700473.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
gi|308167141|gb|EFO69315.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
Length = 275
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 116/237 (48%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F++YQ W A YAGT L KK + P+ VS+ L + +GR+I EF+TF
Sbjct: 64 FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VSYPLIGAPDTMDQEGRIITLEFDTF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
YL Y PN+G E R WD + QE++ + KP+I GD NV+H+EID+ HP
Sbjct: 123 YLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKLDQNKPVIASGDYNVAHQEIDLKHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
E + GFT ERK F +L G ID +R+++ D+ +SW
Sbjct: 181 E---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFRYIN--GDITDVYSW 222
Query: 214 SGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
I K RIDY++VS+ L D+I +M G DHCP+ L++
Sbjct: 223 WSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR------KDHCPILLKI 273
>gi|967268|gb|AAC47024.1| class II apurinic/apyrimidinic(AP)-endonuclease [Dictyostelium
discoideum]
Length = 361
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 28/229 (12%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
K Y+ + AD K + GT +L KK +P ++F + K++ +GRVI E+ FY++N
Sbjct: 154 KGYEYHFIEADQKGHHGTGVLTKK--KPNAITFGI--GIAKHDNEGRVITLEYVQFYIVN 209
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFA 157
TY PN G + + R ++WD Q ++ + + KP+IWCGDLNV+H EID+ +P
Sbjct: 210 TYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNP---- 265
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
K + GFTI ER F L++G +D+YR + K+ F WS
Sbjct: 266 -----------KTNKKSAGFTIEERTSFSNFLEKG-YVDSYRHFNPGKEGSYTF-WSYLG 312
Query: 218 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
G+ + R+DYF+VS+ L D I + GSDHCP+ +
Sbjct: 313 GGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSV-----MGSDHCPIGV 356
>gi|377832034|ref|ZP_09814998.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
gi|377554041|gb|EHT15756.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
Length = 252
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 31/230 (13%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
+Y +W+ A+ K Y+GTA+ K+ P V + + +E GRVI E+ FYL+NT
Sbjct: 50 DYHQYWNYAEKKGYSGTAIFAKQ--PPLSVQYGINVPEFDHE--GRVITLEYPDFYLINT 105
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN+G + + F R +++ E+V Q S K ++WCGDLNV+H+EID+ +P+
Sbjct: 106 YVPNSGAELKRLDF--RHGFNEAFYEYVNQLSQQKSIVWCGDLNVAHQEIDLKNPQ---- 159
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
+ PGFT ER F +LK G D +R+ + +++ + WS
Sbjct: 160 -----------SNHHHPGFTDEERFDFSKLLKSG-FTDTFRYFYPDQEHSYSW-WSYRFH 206
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+ S +L +++ ++ + GSDHCPV L++
Sbjct: 207 ARQRNAGWRIDYFVASADLDSQLVDAKIH------DQILGSDHCPVELDI 250
>gi|403378650|ref|ZP_10920707.1| exodeoxyribonuclease [Paenibacillus sp. JC66]
Length = 256
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 32/230 (13%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
N +W+ A K Y+GTA+ K +P V + LE+ E +GR++ EF +FYL+N
Sbjct: 51 NIHSYWNYALKKGYSGTAVFSK--IEPISVRYGLEEDE---EAEGRILTLEFASFYLVNV 105
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN K + + R +W+ R +++++Q KP+I CGDLNV+H+EID+ +
Sbjct: 106 YTPNA--KRDLSRLPYRLEWEDRFRKYIVQLDEKKPVIICGDLNVAHQEIDIKNA----- 158
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
K + G GFT ER +F +L G +D++R L+ ++ D WS P
Sbjct: 159 ----------KSNVGNSGFTHEERGKFNELLGAG-FLDSFRELYPDR-TDAYTWWSFMPK 206
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF++SE+L+ + + H GSDHCPV +EL
Sbjct: 207 VRERNIGWRIDYFLISEKLRPHLKEAGIDSH------IMGSDHCPVYVEL 250
>gi|401564907|ref|ZP_10805765.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
gi|400188269|gb|EJO22440.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
Length = 250
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 135/271 (49%), Gaps = 35/271 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA K ++ +EL D +E K+ +A L P ++ Y ++S Y+GTA+
Sbjct: 11 LRAALKKGFMESFKELDADAFCLQETKMQEGQAILDLPGYEQY--FYSAEKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P VS+ + +++ +GRVI EFE YL+ Y PN+ K R W
Sbjct: 69 TR--LKPLSVSYGIGIE--EHDNEGRVITMEFEDVYLVTVYTPNS--KNGLLRLDYRMVW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + F+L K P++ CGDLNV+H EID+ +P K + GFT
Sbjct: 123 EDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP---------------KSNRRNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER +F +L G +D +R L+ D+ ++ WS + RIDYF+VSEEL
Sbjct: 168 DEERGKFTELLAAG-FVDTFRALY--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEEL 224
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+DRI A E+ +GSDHCPVSL L
Sbjct: 225 RDRIAAAEIHAD------IFGSDHCPVSLTL 249
>gi|255523264|ref|ZP_05390235.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296186225|ref|ZP_06854630.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
gi|255513132|gb|EET89401.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296049493|gb|EFG88922.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
Length = 252
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 124/232 (53%), Gaps = 31/232 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK K +SF+ +++ +GRVI EF+ FY++ Y
Sbjct: 50 YHQYWNYAERKGYSGTAIFTKK----KPLSFTYGIGIEEHDKEGRVITLEFDDFYMVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K++ + R KW+ ++++ KP+I CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--KDQLARLEYRMKWENDFRDYLKSLEKNKPVIMCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F L G ID YR+ + +K+ + WS
Sbjct: 158 ---------KTNRKNAGFTDEEREKFTEFLSAG-FIDTYRYFNPDKEGAYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
+ RIDYF VS+ LK+R+++ ++ + GSDHCPV L +S+
Sbjct: 207 RKNNAGWRIDYFCVSDCLKERLVSADIHTEVM------GSDHCPVELVISDV 252
>gi|282880102|ref|ZP_06288822.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
gi|281305975|gb|EFA98015.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
Length = 249
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 138/271 (50%), Gaps = 36/271 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A K+ ++ Q+L D +E K+ F Y +W+ A+ K Y+GTA+
Sbjct: 11 LRACVKKNFQESFQQLDADFFCLQETKM--QEGQLDLQFPGYTSYWNYAEKKGYSGTAIY 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K +P VS+ L +++ +GRVI E E F+L+ Y PN+ ++E R KW
Sbjct: 69 TKH--KPIHVSYGL--GIEEHDQEGRVITLEMEDFFLITVYVPNS--QDELKRLDYRMKW 122
Query: 120 DKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + ++ Q KP+I CGDLNV+HEEID+ +P+ NK + GFT
Sbjct: 123 EDDFRAYITQLDQIKPVIICGDLNVAHEEIDLKNPK------------TNKRN---AGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER + +L G ID +R+L+ E+ +S WS + + RIDYF++SE L
Sbjct: 168 DEERNKMTRLLDNG-FIDTFRYLYPEQ---ITYSWWSYRFRAREKNAGWRIDYFLISERL 223
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K+R+ ++ + GSDHCPV LEL
Sbjct: 224 KERLHDAKIHTEIM------GSDHCPVELEL 248
>gi|255280445|ref|ZP_05345000.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268910|gb|EET62115.1| exodeoxyribonuclease III [Marvinbryantia formatexigens DSM 14469]
Length = 253
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 123/233 (52%), Gaps = 31/233 (13%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P + Y +W+ A K Y+GTA+ K+ +P VS+ + +++ +GRVI EF+T+YL
Sbjct: 48 PLEGYHQYWNYAKKKGYSGTAVFSKE--EPLSVSYGI--GIEEHDQEGRVITLEFDTYYL 103
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN+ + E R W++ ++ KP+I+CGDLNV+H+EID+ +P
Sbjct: 104 VTVYTPNS--QNELARLPYRMTWEEAFLAYLKGLEKNKPVIFCGDLNVAHKEIDLKNP-- 159
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K + GFT ER++F IL+ G ID YR+ + E++ + WS
Sbjct: 160 -------------KTNRKNAGFTDEEREKFSQILENG-FIDTYRYFYPEQEGVYSW-WSY 204
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LKDR++ + GSDHCPV L++
Sbjct: 205 RFRAREKNAGWRIDYFCVSECLKDRLVDARIHTE------ITGSDHCPVELQI 251
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 125/229 (54%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K+ +P V + + + L+ E +GR+I EF++FYL+N Y
Sbjct: 50 YHQFWNYALKKGYSGTAVFTKQ--KPISVRYGVGE--LESEDEGRIITLEFDSFYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
N K + + R +W+ ++E++L KP+++CGDLNV+H E+D+ +
Sbjct: 106 TINA--KRDLSRLPERLEWEDALKEYLLDLDRHKPVVYCGDLNVAHAEVDLKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+ + G GFT+ ER + +L+ G ID++R+L+ E+ D WS
Sbjct: 158 ---------RSNHGNSGFTLEERGKMTTLLESG-FIDSFRYLYPER-TDAFTWWSYMRDV 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYFIVS +LK++I + + GSDHCP+ LEL
Sbjct: 207 RARNIGWRIDYFIVSTQLKEKINEASIYAEVL------GSDHCPIGLEL 249
>gi|229168476|ref|ZP_04296199.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|423592321|ref|ZP_17568352.1| exodeoxyribonuclease [Bacillus cereus VD048]
gi|228614882|gb|EEK71984.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|401230563|gb|EJR37070.1| exodeoxyribonuclease [Bacillus cereus VD048]
Length = 252
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W+ + ++ + KP+I+CGDLNV+H+E+D+ +P
Sbjct: 107 TPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F +L+ G ID YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTCVLEAG-FIDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF++SE LK +I ++ + GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVISERLKHKITDAKINSEVM------GSDHCPVELHIN 251
>gi|423522432|ref|ZP_17498905.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
gi|401175126|gb|EJQ82329.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
Length = 252
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F L EG +D YR+L+ + + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTLAL-EGGFVDTYRYLY--PNQEGAYSWWSYLMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF+VSE +K +II ++ + GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVVSERIKGQIIDAKINSEVM------GSDHCPVELHIN 251
>gi|227509865|ref|ZP_03939914.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190789|gb|EEI70856.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 252
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 135/268 (50%), Gaps = 33/268 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A KD + Q+L D +E K+ + P Y+ +++ A+ K Y+GTA+
Sbjct: 11 LRAVVKKDFAETFQKLDADFFCIQETKMQEGQLKLDLP--GYRQYFNYAERKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K +P VS+ ++ A +++ +GR I E+ FYL+ +Y PN+G K + F R W
Sbjct: 69 AKD--EPLTVSYGIQ--APEFDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGW 122
Query: 120 DKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
DK ++ Q S KP+I CGDLNV+H EID+ +P K + GFT
Sbjct: 123 DKAFHAYLNQLDSHKPVILCGDLNVAHHEIDLKNP---------------KSNHHNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER+ F +L +G +D +R + +K+ D WS + R RIDYF+ S+ L
Sbjct: 168 DEERQSFTKLLDQG-FMDTFRHFYPDKE-DIYSWWSYRFHSRDRNAGWRIDYFVTSKRLA 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSL 266
D I ++ L +GSDHCPV L
Sbjct: 226 DHISDSKI------LTDIFGSDHCPVEL 247
>gi|229061336|ref|ZP_04198683.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|423511766|ref|ZP_17488297.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
gi|228717951|gb|EEL69596.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|402450027|gb|EJV81861.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
Length = 252
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W+ + ++ + KP+I+CGDLNV+H+E+D+ +P
Sbjct: 107 TPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F +L+ G ID YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTCVLEAG-FIDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + R+DYF++SE L+ +II ++ + GSDHCPV L +
Sbjct: 207 A-RAKNIGWRLDYFVISERLEHKIIDAKINSEVM------GSDHCPVELHI 250
>gi|349612033|ref|ZP_08891261.1| exodeoxyribonuclease [Lactobacillus sp. 7_1_47FAA]
gi|348609208|gb|EGY59168.1| exodeoxyribonuclease [Lactobacillus sp. 7_1_47FAA]
Length = 275
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 116/237 (48%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F++YQ W A YAGT L KK + P+ V++ L + +GR+I EF+TF
Sbjct: 64 FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VTYPLIGAPDTMDQEGRIITLEFDTF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
YL Y PN+G E R WD + QE++ + KP+I GD NV+H+EID+ HP
Sbjct: 123 YLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKLDQNKPVIASGDYNVAHQEIDLKHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
E + GFT ERK F +L G ID +R+++ D+ +SW
Sbjct: 181 E---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFRYIN--GDITDVYSW 222
Query: 214 SGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
I K RIDY++VS+ L D+I +M G DHCP+ L++
Sbjct: 223 WSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR------KDHCPILLKI 273
>gi|403340594|gb|EJY69586.1| Exodeoxyribonuclease III family protein [Oxytricha trifallax]
Length = 437
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 131/263 (49%), Gaps = 38/263 (14%)
Query: 15 ELKDDTKASREEKLILMRALSSPPFKNYQIWWS--LADSKYAGTALLVKKCFQ---PKKV 69
E K D A +E + L A P Y W+ + YAGTA+L+ K ++ P KV
Sbjct: 127 ETKIDVDALAKENIKLQIAKWFPIDTQY---WNCCIVKKGYAGTAILINKNYKGSKPTKV 183
Query: 70 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 129
+ + + K++ +GR++ A+F+ F L+ TY PN G + R +WD+ ++
Sbjct: 184 EYGIGIS--KHDKEGRMVNAQFDKFNLVATYIPNAGVMGLDRLGYRVNEWDRDFHTYLKN 241
Query: 130 C---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 186
+GKP+IWCGDLNV++E ID+ Y P KE G+TI ER F
Sbjct: 242 TEVTTGKPVIWCGDLNVANEPIDI-------------YNPKGKEK--SAGYTIQERNSFK 286
Query: 187 AILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACE 245
A LK+ ID YR L+ +S W+ + + + R+DYF+VS+ + ++ E
Sbjct: 287 AFLKDRAFIDTYRHLNPH---SVKYSYWNLRSGARDKDQGWRLDYFVVSDFMMPSVLTSE 343
Query: 246 MQGHGIELEGFYGSDHCPVSLEL 268
+ ++GSDHCP+SL
Sbjct: 344 INNE------YHGSDHCPLSLSF 360
>gi|291222020|ref|XP_002731016.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 338
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 131/234 (55%), Gaps = 33/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +WS A+ K YAGT L K +P V++ + K++ +GR I AE+E FY +
Sbjct: 134 FDGYHSYWSYAEEKGYAGTGLYSK--VEPISVTYGIGIN--KHDKEGRCITAEYEKFYFI 189
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
+TY PN G + S+ R++WDK +E++ + KP+IWCGDLNV+H+EID+++P+
Sbjct: 190 STYIPNAGKGLKRLSY--RQEWDKDFREYMKKLDEKKPIIWCGDLNVAHQEIDLTNPK-- 245
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSG 215
NK+ GF+ ER+ F L+ G L+D+YR L+ EK + F ++
Sbjct: 246 ----------TNKK---TAGFSKEEREGFTKHLEIG-LVDSYRHLNPEKTGEWSFWTYMM 291
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
N GK G R+DYF++S+ R++ C I YGSDH P+ L ++
Sbjct: 292 NARGKNIG--WRLDYFVLSK----RLLPCLCD--SIIRSQVYGSDHAPIVLFMA 337
>gi|259500789|ref|ZP_05743691.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|302190760|ref|ZP_07267014.1| exonuclease III [Lactobacillus iners AB-1]
gi|312871137|ref|ZP_07731235.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|312872693|ref|ZP_07732758.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|312874955|ref|ZP_07734974.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|329919752|ref|ZP_08276703.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
gi|259167483|gb|EEW51978.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|311089700|gb|EFQ48125.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|311091735|gb|EFQ50114.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|311093151|gb|EFQ51497.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|328937099|gb|EGG33527.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
Length = 275
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 116/237 (48%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F++YQ W A YAGT L KK + P+ V++ L + +GR+I EF+TF
Sbjct: 64 FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VTYPLIGAPDTMDQEGRIITLEFDTF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
YL Y PN+G E R WD + QE++ + KP+I GD NV+H+EID+ HP
Sbjct: 123 YLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKLDQNKPVIASGDYNVAHQEIDLKHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
E + GFT ERK F +L G ID +R+++ D+ +SW
Sbjct: 181 E---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFRYIN--GDITDVYSW 222
Query: 214 SGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
I K RIDY++VS+ L D+I +M G DHCP+ L++
Sbjct: 223 WSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR------KDHCPILLKI 273
>gi|229134542|ref|ZP_04263353.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
gi|228648935|gb|EEL04959.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
Length = 252
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 125/232 (53%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W+ + ++ + KP+I+CGDLNV+H+E+D+ +P
Sbjct: 107 TPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F +L+ G ID YR+L+ D + +SW +G
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTCVLEAG-FIDTYRYLY--PDQEGAYSWWSYRMG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF++SE LK +I ++ GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVISERLKHKITDAKINSE------IMGSDHCPVELHIN 251
>gi|404330185|ref|ZP_10970633.1| exodeoxyribonuclease III [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 252
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 119/230 (51%), Gaps = 34/230 (14%)
Query: 43 QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
Q W+ Y+GTA++ K +P V++ + +E GRVI E+E +YL+ Y P
Sbjct: 53 QYWYDAEKKGYSGTAIITKN--KPLNVTYGIGVDEFDHE--GRVITLEYEDYYLMTVYTP 108
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N + + R KW + F+ + KP+++CGDLNV+H+ ID+ +P
Sbjct: 109 NA--QRDLKRLGFRLKWGQAFTNFIDRLDRRKPVVFCGDLNVAHQAIDLKNP-------- 158
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 221
K + GFT ER+ F +L G ID++R+LH D + +SW + +G
Sbjct: 159 -------KSNMKNAGFTAEERQDFSELLDTG-FIDSFRYLH--PDREGAYSW-WSYMGNA 207
Query: 222 RGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R + + RIDYF++SE LK RI ++ L GSDHCPV +EL+
Sbjct: 208 RARNVGWRIDYFVISERLKKRIKDAKI------LADVRGSDHCPVEIELA 251
>gi|281417190|ref|ZP_06248210.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
gi|281408592|gb|EFB38850.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
Length = 251
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ + +P V + +++ +GRVI EF+ +YL+N Y
Sbjct: 51 YHQYWNYAERKGYSGTAVFTR--IKPLYVQNGIGID--EHDREGRVITLEFDNYYLVNVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K+E R KW+ + +++ K P+I CGD+NV+H+EID+ +PE
Sbjct: 107 TPNA--KKELERLDYRMKWEDDFRNYLVGLKAKKPVIVCGDMNVAHKEIDLKNPE----- 159
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
N+ GFT ER +F +L G ID +RF + +K + WS
Sbjct: 160 -------SNRR---SAGFTDEERAKFTELLNAG-FIDTFRFFYPDKTGAYTW-WSYMFNA 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF VSEELKDR+++ + + GSDHCPV L++
Sbjct: 208 RARNAGWRIDYFCVSEELKDRLVSASIH------DDVMGSDHCPVELQI 250
>gi|376263099|ref|YP_005149819.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
gi|373947093|gb|AEY68014.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
Length = 253
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 35/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y+ +W+ A K Y+GTA+ K K VS S +++ +GRVI EFE ++L+
Sbjct: 48 LEGYEHYWNYAVKKGYSGTAIFTK----IKPVSSSCGIGIEEHDNEGRVITLEFEEYFLV 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ K E + R KW+ + ++ Q KP+I CGD+NV+H+EID+ +P
Sbjct: 104 NVYTPNS--KRELERLEYRMKWEDDFRVYLKQLEQTKPVIICGDMNVAHQEIDIKNPR-- 159
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
NK GFT+ ER++F +L++G +D +R L+ +K ++W +
Sbjct: 160 ----------SNKR---SAGFTMEEREKFSELLEQG-FVDTFRTLYPDKTG--AYTW-WS 202
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K R K + RIDYF +SE LKDRI A E+ GSDHCPV L +
Sbjct: 203 YMFKAREKNVGWRIDYFCISEALKDRIEAAEIYCD------IMGSDHCPVGLTI 250
>gi|340758618|ref|ZP_08695204.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
gi|251835305|gb|EES63846.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
Length = 253
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 123/230 (53%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P +VS+ L +++ +GRVI E+E FY++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKK--KPIEVSYGL--GIEEHDKEGRVITLEYEDFYMITVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ +EE R W+ + +V++ KP+I CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QEELARLDYRMSWEDEFRNYVMKLDKLKPVIICGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GF+ ER +F +L+ G ID++R + E + +S WS
Sbjct: 158 ---------KSNRKNAGFSDEERAKFTELLENG-FIDSFRHFYPE--VTGAYSWWSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE LKD + E+ + GSDHCPV L+L
Sbjct: 206 ARKNNAGWRIDYFVVSERLKDIMEGAEIHNEIL------GSDHCPVVLKL 249
>gi|340354875|ref|ZP_08677571.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622889|gb|EGQ27400.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
Length = 238
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 31/236 (13%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
PF Y+ +W+ A+ K Y+GTA+ K+ +P V + L E +GRV+ EFE F+L
Sbjct: 32 PFDGYEHYWNYAEKKGYSGTAVFTKQ--RPLSVQYGL--NGQDSEAEGRVLTLEFEKFFL 87
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 155
+N Y PN+ + + R KW+ + + + KP+I+CGDLNV+HEEID+ +
Sbjct: 88 VNCYTPNS--QRDLARLSYRLKWEDEMLAHLTELDAQKPVIYCGDLNVAHEEIDICNV-- 143
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K ++G GFT ER + +L G ID +R+LH ++ + WS
Sbjct: 144 -------------KSNYGNSGFTKEERAKMTRLLDSG-FIDTFRYLHPNQEGAYTW-WSY 188
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
+ R RIDY ++S L+ + E+ + GSDHCP+S E + A
Sbjct: 189 MRDVRARNIGWRIDYLLISNRLQSTLQTSEIHAEIL------GSDHCPISAEFAFA 238
>gi|258645453|ref|ZP_05732922.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
gi|260402804|gb|EEW96351.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
Length = 254
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
YQ W S Y+GTAL K +P V++ + +++ +GRVI A+F L+ Y
Sbjct: 54 YQYWNSAVKKGYSGTALFTK--IKPLSVTYGIGME--EHDQEGRVITADFNDHCLVTCYT 109
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ + R KW+ ++++L S K P+I CGDLNV+HEEID+++P A+
Sbjct: 110 PNS--QRGLARLTYRMKWEDDFKKYLLDLSKKKPVILCGDLNVAHEEIDLANP---ASNH 164
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
+N GFT ER + +L +G D++R+LH++K D WS +
Sbjct: 165 MNA------------GFTDDERNKMTELLSDG-FTDSFRYLHQDKK-DAYSWWSYFAKSR 210
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R RIDYF+VS+ L+ RI A E+ GSDHCPV L++
Sbjct: 211 ERNIGWRIDYFLVSDILQPRIKAAEIHS------SILGSDHCPVELDI 252
>gi|330843681|ref|XP_003293776.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
gi|325075853|gb|EGC29694.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
Length = 249
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 32/215 (14%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
+ GT LL K +P + F + K++ +GRVI AE++ FYL+NTY PN+G + +N
Sbjct: 64 HHGTGLLTK--LKPLSLKFGIG--IAKHDTEGRVITAEYDDFYLVNTYIPNSGSRGLKNL 119
Query: 113 FQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R ++WD Q+++++ KP++WCGDLNV+H EID+ +P K +
Sbjct: 120 DYRIKEWDVDFQKYLVELDKKKPVVWCGDLNVAHTEIDLKNP---------------KTN 164
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RID 229
GFTI ER FG L +G ID+YR + K+ F W+ +G R K + R+D
Sbjct: 165 TKSAGFTIQERTSFGDFLNKG-FIDSYRHYNPGKEGAFTF-WT--YMGGARAKNVGWRLD 220
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 264
YF+VS+ D I ++ GSDHCP+
Sbjct: 221 YFVVSKRYIDSIKTPFIR------STVMGSDHCPI 249
>gi|255993955|ref|ZP_05427090.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993623|gb|EEU03712.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
Length = 252
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
+Q W S Y+GT +L K+ + VS S +++ +GRV+ A+F+ FYL+N Y
Sbjct: 52 HQYWDSAKRKGYSGTLVLSKE----EAVSTSKGIGIEEHDEEGRVVTADFKDFYLVNVYV 107
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ K E R+ W+ +++V++ + KP+I CGDLNV+H EID+ +P
Sbjct: 108 PNS--KPELARLDYRQHWEDDFRDYVVKLNKEKPVIICGDLNVAHTEIDLKNP------- 158
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + PGFT ER++F +L+ G D +R+ + +K+ + WS +
Sbjct: 159 --------KTNRRNPGFTDEEREKFTELLEAG-FTDTFRYKYPDKEGAYTW-WSYRFNAR 208
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RIDYF+VS ++KD+I ++ L YGSDHCPV LEL
Sbjct: 209 KNNAGWRIDYFLVSNDVKDKIEDAKI------LSDVYGSDHCPVVLEL 250
>gi|373858337|ref|ZP_09601074.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
gi|372451804|gb|EHP25278.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
Length = 252
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 123/235 (52%), Gaps = 31/235 (13%)
Query: 36 SPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
S K++ +W+ A K Y+GTA+ KK +P V + + T +++ +GR I EFE F
Sbjct: 44 SLELKDHSQYWNYAVKKGYSGTAIFSKK--KPLSVQYGIGTT--EHDSEGRAITLEFEEF 99
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
YL+N Y PN+ + + R W+ ++EF+ + + KP+I CGD+NV+H EID+ +P
Sbjct: 100 YLVNIYTPNS--QRDLARLNYRVAWEDYLREFLQELDTKKPVILCGDMNVAHHEIDLKNP 157
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
K + GFT ER + +L G +D +R L+ EK+ + W
Sbjct: 158 ---------------KSNMKNSGFTPEERGKMTELLNNG-FVDTFRHLNPEKE-NVYTWW 200
Query: 214 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
S + R RIDYF+VSE L++ II ++ GSDHCPV LE+
Sbjct: 201 SYMNKVRERNIGWRIDYFLVSERLRESIIDTQVHS------DIMGSDHCPVLLEI 249
>gi|255655350|ref|ZP_05400759.1| putative exodeoxyribonuclease [Clostridium difficile QCD-23m63]
gi|296451338|ref|ZP_06893076.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
gi|296259754|gb|EFH06611.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
Length = 250
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 123/229 (53%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P KV + + +++ +GRVI EFE FY + Y
Sbjct: 50 YFQYWNYAERKGYSGTAIFTKK--EPLKVMYGI--NIEEHDKEGRVITLEFEDFYFVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W+ +++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 106 TPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G ID YR+ + +K+ + WS
Sbjct: 158 ---------KNNMKNAGFTKEEREKFSKLLDSG-FIDTYRYFNPDKEGVYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF S++L+DR+I+ ++ + GSDHCPV LE+
Sbjct: 207 RKNNAGWRIDYFCASKKLEDRLISADIHTEVL------GSDHCPVELEI 249
>gi|404485198|ref|ZP_11020397.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
gi|404338985|gb|EJZ65428.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
Length = 252
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F YQ +W+ A+ K Y+GTA+ + QP VS+ +++T +++ +GR+I E E F+L+
Sbjct: 48 FDGYQSYWNYAEKKGYSGTAVFTR--LQPISVSYGMDRT--EHDREGRIITLEMEDFFLV 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ +E + R W+ F+ Q + KP+I CGDLNV+H+EID+ +P
Sbjct: 104 NVYTPNS--QEGLKRLEYRMTWEDDFLHFLKQLKTQKPVIVCGDLNVAHQEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G D +R+ + + D WS
Sbjct: 159 ------------KTNRKNAGFTDEERYKFTQLLSAG-FTDTFRYFYPNQK-DIYSWWSYR 204
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S L +++ + ++ +GSDHCPV LE+
Sbjct: 205 FKAREKNAGWRIDYFLASASLNEKLCSAKIHTE------IFGSDHCPVELEI 250
>gi|429726547|ref|ZP_19261335.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
gi|429146016|gb|EKX89089.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
Length = 267
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 33/234 (14%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
F Y+ +W+ A+ K Y+GT + + +P V + L +++ +GRVI EFE YL
Sbjct: 63 AFDGYESYWNYAEKKGYSGTCIFTR--IKPLSVRYGL--GIEEHDHEGRVITLEFEDLYL 118
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 155
L Y PN+ ++ R WD + +V Q KP++ CGDLNV+H+EID+ +P
Sbjct: 119 LTVYTPNS--QDGLRRLDYRMTWDDDFRAYVQQLDAHKPVVICGDLNVAHQEIDLKNP-- 174
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 214
K + GFT ER++F +L+ G D YRF + D+ +S WS
Sbjct: 175 -------------KTNRKNAGFTDEERQKFSQLLEAG-FTDTYRFFN--PDLTDSYSWWS 218
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S+ L DR+++ ++ + +GSDHCPV L +
Sbjct: 219 YRFKAREKNAGWRIDYFVTSQSLNDRLVSADIH------QEIFGSDHCPVELVI 266
>gi|340352974|ref|ZP_08675807.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
gi|339611994|gb|EGQ16810.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
Length = 250
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 123/235 (52%), Gaps = 34/235 (14%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
F Y+ +W+ AD K Y+GTA+ K +P V + L+ +++ +GRVI E ETF+L
Sbjct: 46 TFDGYESYWNYADKKGYSGTAIFTKH--KPINVHYGLDID--EHDHEGRVITLEMETFFL 101
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN+ ++ R KW+ Q ++ Q K P++ CGDLNV+HEEID+ +P
Sbjct: 102 VTCYTPNS--QDGLKRLDYRMKWEDDFQAYIKQLDKKKPVVICGDLNVAHEEIDLKNP-- 157
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 214
K + GFT ER + L G ID++R L+ E+ +S WS
Sbjct: 158 -------------KTNRKNAGFTDEERAKMTQFLNNG-FIDSFRTLYPEQ---ITYSWWS 200
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYF++S L++++I ++ YGSDHCPV +EL+
Sbjct: 201 YRFKAREKNAGWRIDYFLLSNRLRNQLIDAKIHTE------VYGSDHCPVEVELN 249
>gi|125972979|ref|YP_001036889.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|256004776|ref|ZP_05429751.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|385779105|ref|YP_005688270.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|419721683|ref|ZP_14248840.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
gi|419725225|ref|ZP_14252277.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|125713204|gb|ABN51696.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|255991226|gb|EEU01333.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|316940785|gb|ADU74819.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|380771412|gb|EIC05280.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|380782260|gb|EIC11901.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
Length = 251
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ + +P V + +++ +GRVI EF+ +YL+N Y
Sbjct: 51 YHQYWNYAERKGYSGTAVFTR--IKPLCVQNGIGID--EHDREGRVITLEFDNYYLVNVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K+E R KW+ + +++ K P+I CGD+NV+H+EID+ +PE
Sbjct: 107 TPNA--KKELERLDYRMKWEDDFRNYLVGLKAKKPVIVCGDMNVAHKEIDLKNPE----- 159
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
N+ GFT ER +F +L G ID +RF + +K + WS
Sbjct: 160 -------SNRR---SAGFTDEERAKFTELLNAG-FIDTFRFFYPDKTGAYTW-WSYMFNA 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF VSEELKDR+++ + + GSDHCPV L++
Sbjct: 208 RARNAGWRIDYFCVSEELKDRLVSASIH------DDVMGSDHCPVELQI 250
>gi|452992928|emb|CCQ95587.1| apurinic/apyrimidinic endonuclease [Clostridium ultunense Esp]
Length = 250
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 119/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P V + L +++ +GRVI EFE FYL+N Y
Sbjct: 50 YHQYWNYAEKKGYSGTAVFTKD--KPLDVKYGL--GIEEHDKEGRVITLEFEDFYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + S KP+I CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QRELTRLDYRMTWEDEFRNYLKELDSIKPVILCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
N+ + GFT ER + +L G ID +R+ + +K+ D WS
Sbjct: 158 ------STNRRN---AGFTDEERGKMTELLGTG-FIDTFRYFYPDKE-DAYTWWSYMRKA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYFIVSE KDR+ ++ GSDHCPV LE+
Sbjct: 207 RDRNVGWRIDYFIVSERFKDRLKDAQIHSE------IMGSDHCPVMLEI 249
>gi|238928084|ref|ZP_04659844.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
gi|238884044|gb|EEQ47682.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
Length = 250
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 134/270 (49%), Gaps = 33/270 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA K ++ +EL D +E K+ +A L P ++ Y ++S Y+GTA+
Sbjct: 11 LRAALKKGFMESFRELDADAFCLQETKMQEGQAILDLPGYEQY--FYSAEKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V++ + +A ++ +GRVI EF+ YL+ Y PN K R W
Sbjct: 69 TR--VKPLSVAYGIGISA--HDNEGRVITMEFDDVYLVTVYTPNA--KRALERLDYRMMW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + F+L K P++ CGDLNV+H EID+ +P K + GFT
Sbjct: 123 EDAFRAFLLGLRAKKPVVVCGDLNVAHTEIDLKNP---------------KSNRRNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER +F +L+ G ID +R L+ ++ + WS + RIDYF+VS EL+
Sbjct: 168 DEERGKFTELLQAG-FIDTFRALYPDRTGAYTW-WSYLRHARETNAGWRIDYFLVSAELR 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
DRI A E+ +GSDHCPVSL L
Sbjct: 226 DRIAAAEIHAD------IFGSDHCPVSLTL 249
>gi|422344654|ref|ZP_16425579.1| exodeoxyribonuclease [Selenomonas noxia F0398]
gi|355376723|gb|EHG23965.1| exodeoxyribonuclease [Selenomonas noxia F0398]
Length = 250
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 132/270 (48%), Gaps = 33/270 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA K ++ +EL D +E K+ +A L P ++ Y ++S Y+GTA+
Sbjct: 11 LRAALKKGFMESFKELNADVFCLQETKMQEGQAILDLPGYEQY--FYSAEKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P VS+ + +++ +GRVI E YL+ Y PN K R W
Sbjct: 69 TR--VKPLSVSYGIGIE--EHDNEGRVITMELPDVYLVTVYTPNA--KRALERLDYRMAW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + F+L K P++ CGDLNV+H EID+ +P K + GFT
Sbjct: 123 EDSFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP---------------KSNRRNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER +FG +L G +D +R L+ +K + WS + RIDYF+VSEEL+
Sbjct: 168 DEERGKFGELLAAG-FVDTFRALYPDKTGAYTW-WSYLRHARETNAGWRIDYFLVSEELR 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
DRI A E+ +GSDHCPVSL L
Sbjct: 226 DRISAAEIHAD------VFGSDHCPVSLTL 249
>gi|334127299|ref|ZP_08501227.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
gi|333389799|gb|EGK60957.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
Length = 255
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 134/271 (49%), Gaps = 35/271 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA K ++ +EL D +E K+ +A L P ++ Y ++S Y+GTA+
Sbjct: 16 LRAALKKGFMESFKELDADAFCLQETKMQEGQAILDLPGYEQY--FYSAEKKGYSGTAIF 73
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V++ L +++ +GRVI EFE YL+ Y PN+ K R W
Sbjct: 74 TR--VKPLSVAYGLGIE--EHDHEGRVITMEFEDIYLVTVYTPNS--KNALARLDYRLVW 127
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + F+L K P++ CGDLNV+H EID+ +P K + GFT
Sbjct: 128 EDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP---------------KSNRRNAGFT 172
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER + +L G ID +R L+ D+ ++ WS + RIDYF+VSEEL
Sbjct: 173 DEERGKLTELLGAG-FIDTFRALY--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEEL 229
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+DRI A E+ +GSDHCPVSL L
Sbjct: 230 RDRIAAAEIHAD------VFGSDHCPVSLTL 254
>gi|325913687|ref|ZP_08176049.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
gi|325477046|gb|EGC80196.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
Length = 275
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F++YQ W A YAGT L KK + P+ VS+ L + +GR+I EF +F
Sbjct: 64 FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VSYPLIGAPDTMDQEGRIITLEFNSF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
YL Y PN+G E R WD + QE++ + KP+I GD NV+H+EID+ HP
Sbjct: 123 YLTQVYTPNSG--NELKRLADREIWDTKYQEYLTKLDQNKPVIASGDYNVAHQEIDLKHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
E + GFT ERK F +L G ID +R+++ D+ +SW
Sbjct: 181 E---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFRYIN--GDITDVYSW 222
Query: 214 SGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
I K RIDY++VS+ L D+I +M G DHCP+ L++
Sbjct: 223 WSQRIRTSKTNNSGWRIDYYLVSQRLADKIEQSKMIDTGDR------KDHCPILLKI 273
>gi|15893514|ref|NP_346863.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|337735433|ref|YP_004634880.1| exodeoxyribonuclease ExoA [Clostridium acetobutylicum DSM 1731]
gi|384456943|ref|YP_005669363.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|15023055|gb|AAK78203.1|AE007535_5 Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|325507632|gb|ADZ19268.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|336292303|gb|AEI33437.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum DSM 1731]
Length = 250
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK K +S+S K++ +GRVI EFE FY++ Y
Sbjct: 50 YYDFWNYAEKKGYSGTAIFTKK----KPISYSYGINEEKHDKEGRVITLEFEDFYMVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ KE+ + R +W+ + ++ KP+I CGD+NV+H EID+ +P
Sbjct: 106 TPNS--KEKLARLEYRMEWEDSFRNYLKALDEKKPVIVCGDMNVAHTEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER +F +L+ G ID YR+ + +K+ + WS
Sbjct: 158 ---------KTNTKNAGFSPEERSKFTELLEAG-FIDTYRYFYPDKEGIYSW-WSYRFKA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF SE LKD++++ ++ + GSDHCPV L +
Sbjct: 207 REKNAGWRIDYFCTSERLKDKLVSADIHTEVM------GSDHCPVELVI 249
>gi|423082270|ref|ZP_17070862.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
gi|423087662|ref|ZP_17076048.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357543976|gb|EHJ25982.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357548596|gb|EHJ30456.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
Length = 250
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P KV + + +++ +GRVI EFE FY + Y
Sbjct: 50 YFQYWNYAERKGYSGTAIFTKK--EPLKVMYGI--NIEEHDKEGRVITLEFEDFYFVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W+ +++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 106 TPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G ID YR+ + +K+ + WS
Sbjct: 158 ---------KNNMKNAGFTKEEREKFSKLLDSG-FIDTYRYFNPDKEGVYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF S++L+DR+++ ++ + GSDHCPV LE+
Sbjct: 207 RKNNAGWRIDYFCASKKLEDRLVSADIHTEVL------GSDHCPVELEI 249
>gi|312873321|ref|ZP_07733376.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
gi|311091201|gb|EFQ49590.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
Length = 275
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F++YQ W A YAGT L KK + P+ VS+ L + +GR+I EF +F
Sbjct: 64 FEDYQYVWRSSQEPARKSYAGTMFLYKKNYHPQ-VSYPLIGAPDTMDQEGRIITLEFNSF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
YL Y PN+G E R WD + QE++ + KP+I GD NV+H+EID+ HP
Sbjct: 123 YLTQVYTPNSG--NELKRLADREIWDTKYQEYLTKLDQNKPVIASGDYNVAHQEIDLKHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
E + GFT ERK F +L G ID +R+++ D+ +SW
Sbjct: 181 E---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFRYIN--GDITDVYSW 222
Query: 214 SGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
I K RIDY++VS+ L D+I +M G DHCP+ L++
Sbjct: 223 WSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR------KDHCPILLKI 273
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 38/260 (14%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE+ D +E KL + Y +W+ A K Y+GTA+ K+ +P VS+
Sbjct: 24 QEVNADVFCIQETKL--QEGQIDLQLEGYYQYWNYAVKKGYSGTAVFTKQ--KPLSVSYG 79
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 131
+ K + E +GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S
Sbjct: 80 VGKES---EDEGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLKKLNS 134
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
K +I CGDLNV+H EID+ +P+ PN+ G GFTI ER + +L
Sbjct: 135 RKAVILCGDLNVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLLAS 179
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGH 249
G +D +R+L+ + + ++W + + K R + + RIDYFIVSE +K+ I + H
Sbjct: 180 G-FLDTFRYLYPNQ--EGAYTW-WSYMNKVRERNIGWRIDYFIVSERMKNVIQESAIHPH 235
Query: 250 GIELEGFYGSDHCPVSLELS 269
+ GSDHCPV LEL+
Sbjct: 236 VM------GSDHCPVMLELN 249
>gi|187933475|ref|YP_001885926.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187721628|gb|ACD22849.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 251
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 31/227 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ K ++ SL +++ +GRV+ EFE FYL+N Y
Sbjct: 51 YYDYWNYAEKKGYSGTAVFSKE----KPLNISLGIGIEEHDKEGRVLTLEFEEFYLVNVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ +++ R W+ + ++ + + KP+I CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--QQKLARIDYRMAWENDFRSYLNELNKAKPVIVCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER++FG +LK G ID YR+ + +K+ + WS
Sbjct: 159 ---------KNNRNNAGFSDEEREKFGELLKSG-FIDTYRYFYPDKEGAYSW-WSYRFNA 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+VS++ +DR++ ++ IE GSDHCPV L
Sbjct: 208 RANNAGWRIDYFLVSKDFEDRLVDAKIHTQ-IE-----GSDHCPVEL 248
>gi|260592674|ref|ZP_05858132.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
gi|260535444|gb|EEX18061.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
Length = 249
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y+ +W+ AD K Y+GTA+ + +P V++ ++ +++ +GRVI E + FYL+
Sbjct: 47 FPGYESYWNYADKKGYSGTAIFTRH--KPLSVTYGIDID--EHDHEGRVITLEMDDFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++E + R KW+ Q ++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 103 TVYTPNS--QDELRRLEYRMKWEDDFQSYLHKLDEIKPVIVCGDMNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G ID +R L+ E+ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEERQKMTQLLSNG-FIDTFRTLYPEQ---VTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF++SE L+DR++ ++ + GSDHCP+ ++L
Sbjct: 202 RFRAREKNTGWRIDYFLISERLRDRLVDAKIHTEIM------GSDHCPIEIDL 248
>gi|6753086|ref|NP_033817.1| DNA-(apurinic or apyrimidinic site) lyase [Mus musculus]
gi|113985|sp|P28352.2|APEX1_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|220337|dbj|BAA14382.1| APEX nuclease precursor [Mus musculus]
gi|533108|gb|AAC13769.1| apurinic/apyrimidinic endonuclease [Mus musculus]
gi|533329|dbj|BAA07270.1| APEX nuclease [Mus musculus]
gi|12850573|dbj|BAB28774.1| unnamed protein product [Mus musculus]
gi|30851442|gb|AAH52401.1| Apurinic/apyrimidinic endonuclease 1 [Mus musculus]
gi|148688888|gb|EDL20835.1| apurinic/apyrimidinic endonuclease 1 [Mus musculus]
Length = 317
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P +Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE+F L
Sbjct: 111 PGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFESFVL 166
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 167 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG 224
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 225 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTY 268
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 269 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>gi|363900200|ref|ZP_09326706.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|395209879|ref|ZP_10398907.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
gi|361957054|gb|EHL10366.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|394704864|gb|EJF12396.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
Length = 252
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 140/270 (51%), Gaps = 33/270 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A K+ ++ Q+L D +E KL + P Y +W+ A K Y+GTA+
Sbjct: 12 LRAVLGKNFMEDFQKLNADIFCLQETKLQEGQIHLDLP--GYFQYWNYAIKKGYSGTAIF 69
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K+ +P V + + T +++ +GRVI EF+ +YL+ Y PN+ + E R ++
Sbjct: 70 TKE--EPLSVQYGIGIT--EHDQEGRVITLEFKDYYLITVYVPNS--QNELKRLPYRMEF 123
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ F+L K P+I+CGDLNV+HEEID+ +P+ LN GF+
Sbjct: 124 EDAFLNFILNLEKKKPVIYCGDLNVAHEEIDLKNPD---TNHLNA------------GFS 168
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER +F +L G L D++R+ + +K+ + + WS + R RIDYF+VS +LK
Sbjct: 169 DEERAKFSRVLSSGYL-DSFRYFYPDKEEEYSW-WSYRTKARDRNVGWRIDYFVVSVKLK 226
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
D++++ + + GSDHCPV + L
Sbjct: 227 DKLLSASIH------QEVMGSDHCPVEITL 250
>gi|426376144|ref|XP_004054867.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376146|ref|XP_004054868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376148|ref|XP_004054869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376150|ref|XP_004054870.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
Length = 318
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 129/234 (55%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P +YQ W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSYQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|260682949|ref|YP_003214234.1| exodeoxyribonuclease [Clostridium difficile CD196]
gi|260686547|ref|YP_003217680.1| exodeoxyribonuclease [Clostridium difficile R20291]
gi|260209112|emb|CBA62286.1| putative exodeoxyribonuclease [Clostridium difficile CD196]
gi|260212563|emb|CBE03542.1| putative exodeoxyribonuclease [Clostridium difficile R20291]
Length = 255
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P KV + + +++ +GRVI EFE FY + Y
Sbjct: 55 YFQYWNYAERKGYSGTAIFTKK--EPLKVMYGI--NIEEHDKEGRVITLEFEDFYFVTVY 110
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W+ +++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 111 TPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNP------ 162
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G ID YR+ + +K+ + WS
Sbjct: 163 ---------KNNMKNAGFTKEEREKFSKLLDSG-FIDTYRYFNPDKEGVYSW-WSYRFNA 211
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF S++L+DR+++ ++ + GSDHCPV LE+
Sbjct: 212 RKNNAGWRIDYFCASKKLEDRLVSADIHTEIL------GSDHCPVELEI 254
>gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 122/232 (52%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A K Y+GTA+ KK +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAVKKGYSGTAIFTKK--EPISVSYGL--GIEEHDQEGRVITLEFEDFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K E R W+ + ++ + + KP++ CGD+NV+HEEID+ +P
Sbjct: 103 TVYTPNS--KNELERLDYRMVWEDEFRSYLAKLNEAKPVVVCGDMNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +LK G D++R+L+ ++ + WS
Sbjct: 158 ------------KTNRRNAGFTDEERSKFTELLKAG-FTDSFRYLYPDR-LHAYSWWSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VS + K++I E+ E E GSDHCPV+L L
Sbjct: 204 ANARKNNTGWRIDYFVVSNDWKEQIQEAEIHA---EQE---GSDHCPVALYL 249
>gi|422422487|ref|ZP_16499440.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
gi|313637385|gb|EFS02862.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
Length = 251
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ K +P V + L +++ +GRVI EF+
Sbjct: 45 LDLPAYKDY---WNYAVKKGYSGTAIFTKT--EPLSVQYGL--GIPEHDDEGRVITLEFD 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
F+++ Y PN+ + E R ++ I +V + KP++ CGDLNV+HEEID+
Sbjct: 98 KFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVLCGDLNVAHEEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L+ G +D++R+ + D++ +
Sbjct: 156 NP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDSFRYFY--PDLEDAY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYF+VSE LKD ++ ++ + GSDHCPV LEL+
Sbjct: 198 SWWSYRMNARARNTGWRIDYFVVSERLKDNLVDAKIHPDVL------GSDHCPVELELN 250
>gi|126698940|ref|YP_001087837.1| exodeoxyribonuclease [Clostridium difficile 630]
gi|254974886|ref|ZP_05271358.1| putative exodeoxyribonuclease [Clostridium difficile QCD-66c26]
gi|255092273|ref|ZP_05321751.1| putative exodeoxyribonuclease [Clostridium difficile CIP 107932]
gi|255100359|ref|ZP_05329336.1| putative exodeoxyribonuclease [Clostridium difficile QCD-63q42]
gi|255306301|ref|ZP_05350472.1| putative exodeoxyribonuclease [Clostridium difficile ATCC 43255]
gi|255314013|ref|ZP_05355596.1| putative exodeoxyribonuclease [Clostridium difficile QCD-76w55]
gi|255516693|ref|ZP_05384369.1| putative exodeoxyribonuclease [Clostridium difficile QCD-97b34]
gi|255649791|ref|ZP_05396693.1| putative exodeoxyribonuclease [Clostridium difficile QCD-37x79]
gi|306519893|ref|ZP_07406240.1| putative exodeoxyribonuclease [Clostridium difficile QCD-32g58]
gi|384360536|ref|YP_006198388.1| exodeoxyribonuclease III [Clostridium difficile BI1]
gi|423090927|ref|ZP_17079213.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
gi|115250377|emb|CAJ68199.1| Exodeoxyribonuclease [Clostridium difficile 630]
gi|357556042|gb|EHJ37664.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
Length = 250
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P KV + + +++ +GRVI EFE FY + Y
Sbjct: 50 YFQYWNYAERKGYSGTAIFTKK--EPLKVMYGI--NIEEHDKEGRVITLEFEDFYFVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W+ +++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 106 TPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G ID YR+ + +K+ + WS
Sbjct: 158 ---------KNNMKNAGFTKEEREKFSKLLDSG-FIDTYRYFNPDKEGVYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF S++L+DR+++ ++ + GSDHCPV LE+
Sbjct: 207 RKNNAGWRIDYFCASKKLEDRLVSADIHTEIL------GSDHCPVELEI 249
>gi|313892072|ref|ZP_07825670.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
gi|313119524|gb|EFR42718.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
Length = 254
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 123/228 (53%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
YQ W S Y+GTAL K +P VS+ + +++ +GR+I AEFE +L+ Y
Sbjct: 54 YQYWNSAIKKGYSGTALFTK--IKPISVSYGM--NIEEHDQEGRLITAEFENHFLVVCYT 109
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ + + + R KW+ + ++L+ + KP+I CGDLNV+H+EID+++P
Sbjct: 110 PNS--QRQLARLEYRMKWENDFKNYLLKLTESKPVILCGDLNVAHKEIDLANPS------ 161
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
+ GFT ERK+F +L+ G D +R+L+ +K D WS +
Sbjct: 162 ---------SNHKNAGFTDDERKKFSTLLENG-FTDTFRYLYPDKK-DAYSWWSYFAKSR 210
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R RIDYF+VS++LK++I ++ E++ GSDHCPV L
Sbjct: 211 ERNIGWRIDYFLVSDKLKNKIKDAKIHP---EIQ---GSDHCPVELTF 252
>gi|374308939|ref|YP_005055370.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
gi|291165919|gb|EFE27966.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
Length = 251
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EF+ FY++
Sbjct: 47 LEGYHQYWNYAERKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDQEGRVITLEFDNFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K E R W+ + ++L+ + KP+I CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KNELLRLDYRMVWEDEFRSYLLRLNETKPVIVCGDLNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFTI ER + +L G ID +RF + E ++ +S WS
Sbjct: 158 ------------KTNQKNAGFTIEERTKMSTLLDSG-FIDTFRFFYPE--LEGAYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+ S+ELK+ + ++ + GSDHCPV L++
Sbjct: 203 RFNARKNNAGWRIDYFLTSQELKENLKDAKIHSDIL------GSDHCPVELDI 249
>gi|13162337|ref|NP_077062.1| DNA-(apurinic or apyrimidinic site) lyase [Rattus norvegicus]
gi|1168468|sp|P43138.2|APEX1_RAT RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|11878235|gb|AAG40859.1|AF309114_1 nuclease APEX [Rattus norvegicus]
gi|624915|dbj|BAA07938.1| APEX nuclease [Rattus norvegicus]
gi|5360709|dbj|BAA82124.1| Apex nuclease [Rattus norvegicus]
gi|50926078|gb|AAH78816.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Rattus
norvegicus]
gi|149033628|gb|EDL88426.1| apurinic/apyrimidinic endonuclease 1, isoform CRA_a [Rattus
norvegicus]
Length = 317
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 129/238 (54%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE
Sbjct: 107 LQELPGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFE 162
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVS 151
+F L+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+
Sbjct: 163 SFILVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLR 220
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L D++R L+ F
Sbjct: 221 NPKG------------NKKN---AGFTPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTF 265
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 266 -WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>gi|357041996|ref|ZP_09103703.1| exodeoxyribonuclease [Prevotella histicola F0411]
gi|355370010|gb|EHG17399.1| exodeoxyribonuclease [Prevotella histicola F0411]
Length = 249
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 137/271 (50%), Gaps = 36/271 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A KD + ++L D +E K+ F Y+ +W+ A+ K Y+GTA+
Sbjct: 11 LRACVGKDFEQQFKDLDADFFCIQETKM--QDGQLDISFPGYESYWNYAEKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K +P VS+ ++ +++ +GRVI E + F+L+ Y PN+ ++ + R KW
Sbjct: 69 TKH--KPLSVSYGIDIE--EHDHEGRVITLEMDDFFLVTVYTPNS--QDGLRRLEYRMKW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ Q ++ + K P+I CGD+NV+HEEID+ +P K + GFT
Sbjct: 123 EDDFQAYLHKLDAKKPVIVCGDMNVAHEEIDIKNP---------------KTNRRNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER++ +L G ID +R L+ E+ +S WS + R RIDYF++S+ L
Sbjct: 168 DEEREKMTQLLNNG-FIDTFRSLYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISDRL 223
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
KDR++ ++ GSDHCPV ++L
Sbjct: 224 KDRLVDAKIHTE------IMGSDHCPVEVDL 248
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ A K Y+GTA+ K+ +P V + L +++ +GRVI AE+ +YL+
Sbjct: 50 FAGYHAYWNSAVKKGYSGTAIFTKE--EPISVQYGL--GIEEHDQEGRVITAEYADYYLV 105
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN K + R+ W+ F+ + KP+I+CGDLNV+H+EID+++P
Sbjct: 106 TVYTPNA--KRDLTRLSYRQVWEDDFLAFIKKLEETKPVIFCGDLNVAHKEIDLANP--- 160
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER++F I++ G L+DA+RF + E + WS
Sbjct: 161 ------------KTNTKNAGFTKEEREKFDQIVENG-LVDAFRFRYPEA-VGAYTWWSYM 206
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VSE L RI +++ GSDHCPV +E+
Sbjct: 207 GGARARNIGWRIDYFVVSEVLTSRIQEVKIRAD------VTGSDHCPVEMEI 252
>gi|281422472|ref|ZP_06253471.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
gi|281403455|gb|EFB34135.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
Length = 250
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 138/272 (50%), Gaps = 36/272 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A KD +EL D +E K+ F+ Y+ +W+ A+ K Y+GTA+
Sbjct: 11 LRACVGKDFENQFKELDADFFCLQETKM--QEGQLDLQFEGYESYWNYAEKKGYSGTAIY 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K +P VS+ + +++ +GR+I E++ FYL+ Y PN+ + E R W
Sbjct: 69 TKH--KPLNVSYGM--GVEEHDHEGRIITLEYDQFYLVTCYTPNS--QTELKRLDYRMTW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ ++F+ K P+I CGDLNV+HEEID+ +P K + GFT
Sbjct: 123 EDDFRKFLKSLDAKKPVIICGDLNVAHEEIDIKNP---------------KTNRRNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER++ +L +G D++R+LH + + +S WS + + RIDYF+VS+ +
Sbjct: 168 DEEREKMTVLLNDG-FTDSFRYLHPD---EVTYSWWSYRFKAREKNAGWRIDYFLVSDRI 223
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
K++I ++ + GSDHCPV ++L+
Sbjct: 224 KEQITEAKIHTEIM------GSDHCPVEVDLT 249
>gi|381184157|ref|ZP_09892815.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380315948|gb|EIA19409.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 251
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P +V + L + +++ +GRVI EFE FY + Y
Sbjct: 50 YYDYWNYAVKKGYSGTAIFTKK--EPLRVFYGL--SVAEHDQEGRVITLEFEQFYFITVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +++ +V KP+I+CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QPELARLAYRMSFEEAFLNYVKNLDQEKPVIFCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER +F +L+ G +D +R + EK+ + WS
Sbjct: 158 ---------KTNRRNPGFSDEERGKFTTVLESG-FVDTFRHFYPEKEGAYSW-WSYRMNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VS L+D++I ++ + GSDHCPV L +
Sbjct: 207 RARNTGWRIDYFVVSSRLRDKLIDAKIHADVL------GSDHCPVELTI 249
>gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 122/232 (52%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A K Y+GTA+ KK +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAVKKGYSGTAIFTKK--EPISVSYGL--GIEEHDQEGRVITLEFEDFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K E R W+ + ++ + + KP++ CGD+NV+HEEID+ +P
Sbjct: 103 TVYTPNS--KNELERLDYRMIWEDEFRSYLAKLNEAKPVVVCGDMNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +LK G D++R+L+ ++ + WS
Sbjct: 158 ------------KTNRRNAGFTDEERTKFTELLKAG-FTDSFRYLYPDR-LHAYSWWSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VS + K++I E+ E E GSDHCPV+L L
Sbjct: 204 ANARKNNTGWRIDYFVVSNDWKEQIQEAEIHA---EQE---GSDHCPVALYL 249
>gi|347549181|ref|YP_004855509.1| putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982252|emb|CBW86246.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 251
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GTA+ K +P V + L+ +++ +GRVI EFE
Sbjct: 45 LDLPEYKDY---WNYAVKKGYSGTAIFTK--IEPISVRYGLDIP--EHDTEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
F+++ Y PN+ + E R ++ I +V + KP++ CGDLNV+HEEID+
Sbjct: 98 KFFMITVYTPNS--QAELKRLDYRMTFEDAILTYVKKLDETKPVVLCGDLNVAHEEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F L+ G +D++R+ + D++ +
Sbjct: 156 NP---------------KTNRKNAGFSDEERAKFTTFLEAG-FVDSFRYFY--PDLEGAY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + + RIDYF+VSE LKD ++ ++ + GSDHCPV LEL+
Sbjct: 198 SWWSYRMNARAQNTGWRIDYFVVSERLKDNLVDAKIHLDVL------GSDHCPVELELN 250
>gi|431795205|ref|YP_007222110.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785431|gb|AGA70714.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 250
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 33/235 (14%)
Query: 38 PFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
PF+ Y +W+ A K Y+GTA+ K+ +P KV++ + K +++ +GRVI EFE F
Sbjct: 44 PFQLEGYHQYWNYAQKKGYSGTAVFTKQ--EPLKVTYGIGKE--EHDQEGRVITLEFEGF 99
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
YL+ Y PN+ + + R W++ F+ KP+I+CGDLN++H EID+ +P
Sbjct: 100 YLVTVYTPNS--QRGLARLEYRMTWEEEFLSFLKNLEQAKPVIFCGDLNMAHTEIDLKNP 157
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
K + GF+ ER +FG +LK+G ID +R+ + +K + W
Sbjct: 158 ---------------KTNRKNAGFSDEERAKFGELLKKG-FIDTFRYFYPDK-TEAYTWW 200
Query: 214 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
S + RIDYF VSE LKD++ + GSDHCPV LE+
Sbjct: 201 SYMFNARANNAGWRIDYFCVSESLKDQL------RDAVIYSEILGSDHCPVGLEI 249
>gi|402875487|ref|XP_003901536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
gi|402875489|ref|XP_003901537.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
Length = 318
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 129/234 (55%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL + C P KVS+ + + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSHQYWSAPSDKEGYSGVGLLSRHC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ TY PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTTYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|426232864|ref|XP_004010439.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Ovis aries]
Length = 318
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 138/253 (54%), Gaps = 33/253 (13%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 77
+TK S + + ++ LS P +Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCSENKLPVELQELSGLP---HQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 149
Query: 78 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 136
+++ +GRVI+AE++ F L+ Y PN G + R+ WD+ ++F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQCWDEAFRKFLKGLASRKPLV 206
Query: 137 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 196
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D
Sbjct: 207 LCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAAPLTD 251
Query: 197 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 256
++R L+ + F W+ + + R+DYF++S+ L + +++ +
Sbjct: 252 SFRHLYPNRAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKIRSKAL----- 305
Query: 257 YGSDHCPVSLELS 269
GSDHCP++L L+
Sbjct: 306 -GSDHCPITLYLA 317
>gi|258512235|ref|YP_003185669.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478961|gb|ACV59280.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 252
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 116/234 (49%), Gaps = 32/234 (13%)
Query: 37 PPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFY 95
P + YQ +W+ A+ K Y+GTA+ + P V + +P+GR+I EF +FY
Sbjct: 47 PIGEAYQQFWNYAERKGYSGTAVFTR--ITPLDVRYGFGDGN---DPEGRIITLEFPSFY 101
Query: 96 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPE 154
++ Y PN K + + R +W+ ++ KP+I CGDLNV+HEEID+ +
Sbjct: 102 VVTVYTPNA--KRDLSRLPYRLEWEDAFCAYLCALDREKPVIACGDLNVAHEEIDIKNA- 158
Query: 155 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWS 214
K + G GFT ER + +L G +D +R LH D WS
Sbjct: 159 --------------KSNRGNSGFTDEERAKMTELLAAG-FVDTFRALHPNV-TDKYTWWS 202
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
P + R RIDYF+VSE L+DRI+ + H + GSDHCPV LE+
Sbjct: 203 NMPGVRERNIGWRIDYFLVSERLRDRILDARIDDHVL------GSDHCPVVLEV 250
>gi|384475785|ref|NP_001245038.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|90078218|dbj|BAE88789.1| unnamed protein product [Macaca fascicularis]
gi|355693074|gb|EHH27677.1| hypothetical protein EGK_17940 [Macaca mulatta]
gi|355767431|gb|EHH62612.1| hypothetical protein EGM_21005 [Macaca fascicularis]
gi|383417983|gb|AFH32205.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946780|gb|AFI36995.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946782|gb|AFI36996.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946784|gb|AFI36997.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
Length = 318
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 129/234 (55%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL + C P KVS+ + + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSHQYWSAPSDKEGYSGVGLLSRHC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ TY PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTTYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|410460164|ref|ZP_11313847.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
gi|409927394|gb|EKN64530.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
Length = 251
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 122/233 (52%), Gaps = 31/233 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+NY +W+ A K Y+GTA+ K +P VS+ L + +E GR I EF +FYL+
Sbjct: 47 LENYNQYWNYAAKKGYSGTAVFTK--IKPISVSYGLGEHMEDHE--GRAITLEFPSFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + + R +W+ I+ ++L+ KP+I CGDLNV+H+EID+ +
Sbjct: 103 NVYTPNS--QRDLARLSYRLEWEDNIRNYLLELDKVKPVILCGDLNVAHQEIDLKNY--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + G GFT ER++ +L G +D++R+L+ +K D WS
Sbjct: 158 ------------KTNRGNSGFTDEEREKMTRLLDSG-FVDSFRYLYPDKG-DVYSWWSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYFI+S+ L II ++ GSDHCPV LEL+
Sbjct: 204 NKVRERNIGWRIDYFILSKGLSSSIIDSQIHTE------IMGSDHCPVCLELN 250
>gi|422419400|ref|ZP_16496355.1| exodeoxyribonuclease III, partial [Listeria seeligeri FSL N1-067]
gi|313632791|gb|EFR99747.1| exodeoxyribonuclease III [Listeria seeligeri FSL N1-067]
Length = 251
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 125/239 (52%), Gaps = 36/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K+Y W+ A K Y+GT KK +P V + L +++ +GRVI EFE
Sbjct: 45 LDLPAYKDY---WNYAVKKGYSGTXXFTKK--EPLSVQYGL--GIEEHDTEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
F+++ Y PN+ + E R ++ I +V + KP++ CGDLNV+HEEID+
Sbjct: 98 KFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVLCGDLNVAHEEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GF+ ER +F A L+ G +D++R+ + D++ +
Sbjct: 156 NP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDSFRYFY--PDLEDAY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S WS + R RIDYF+VSE LKD ++ ++ + GSDHCPV LEL+
Sbjct: 198 SWWSYRMNARARNIGWRIDYFVVSERLKDNLVDAKIHPDVL------GSDHCPVELELN 250
>gi|227522924|ref|ZP_03952973.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227089953|gb|EEI25265.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 252
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 135/268 (50%), Gaps = 33/268 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A KD + Q+L D +E K+ + P Y+ +++ A+ K Y+GTA+
Sbjct: 11 LRAVVKKDFAEIFQKLDADFFCIQETKMQEGQLKLDLP--GYRQYFNYAERKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K +P VS+ ++ A +++ +GR I E+ FYL+ +Y PN+G K + F R W
Sbjct: 69 AKD--EPLTVSYGIQ--APEFDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGW 122
Query: 120 DKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
DK ++ Q S KP+I CGDLNV+H EID+ +P+ + GFT
Sbjct: 123 DKAFHAYLNQLDSHKPVILCGDLNVAHHEIDLKNPQ---------------SNHHNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER+ F +L +G +D +R + +K+ D WS + R RIDYF+ S+ L
Sbjct: 168 DEERQSFTKLLDQG-FMDTFRHFYPDKE-DIYSWWSYRFHSRDRNAGWRIDYFVTSKRLA 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSL 266
D I ++ L +GSDHCPV L
Sbjct: 226 DHISDSKI------LTDIFGSDHCPVEL 247
>gi|380796163|gb|AFE69957.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Macaca mulatta]
Length = 297
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 129/234 (55%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL + C P KVS+ + + +++ +GRVI+AEF++F L
Sbjct: 91 PGLSHQYWSAPSDKEGYSGVGLLSRHC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVL 146
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ TY PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 147 VTTYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 204
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 205 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 248
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 249 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 296
>gi|306820340|ref|ZP_07453979.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|402309414|ref|ZP_10828407.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
gi|304551669|gb|EFM39621.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|400372381|gb|EJP25325.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
Length = 251
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ + +P V + L K +++ +GR+I E+ FY+ Y
Sbjct: 50 YYSYWNYAKRKGYSGTAIFTR--IEPIDVFYGLGKE--EHDDEGRLITLEYPEFYVSTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K+E R++W+ +EF K P+I CGD+NV+H+EID+ +P
Sbjct: 106 TPNS--KQELLRLDYRQEWEDEFREFFKNLDAKKPVIICGDMNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGFT ER++F +L G D +R+ + +K+ + + WS
Sbjct: 158 ---------KTNRKNPGFTDEEREKFTLLLDAG-FTDTFRYFYPDKENEYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF+VS+ L++++ A + + +GSDHCPVS+ELS
Sbjct: 207 RKNNTGWRIDYFLVSDRLQEKLTAASIH------QDVFGSDHCPVSVELS 250
>gi|166030570|ref|ZP_02233399.1| hypothetical protein DORFOR_00233 [Dorea formicigenerans ATCC
27755]
gi|346308967|ref|ZP_08851071.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
gi|166029572|gb|EDR48329.1| exodeoxyribonuclease III [Dorea formicigenerans ATCC 27755]
gi|345901516|gb|EGX71315.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
Length = 250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 122/237 (51%), Gaps = 34/237 (14%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L +P + Y W+ A K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE
Sbjct: 45 LDTPGYHQY---WNYAKKKGYSGTAIFTKQ--EPISVSYGL--GIEEHDQEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
FY + Y PN+ + E R KW++ ++ + KP+I+CGDLNV+H EID+
Sbjct: 98 DFYFITVYTPNS--QSELARLDYRMKWEEDFLTYLKKLEETKPVIFCGDLNVAHTEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GFT ER++F +L G +D +R+ + E+ +
Sbjct: 156 NP---------------KTNRKNAGFTDEERQKFTELLNAG-FVDTFRYFYPEQTGIYSW 199
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
WS + + RIDYF VSE LKDR+ ++ L GSDHCPV L++
Sbjct: 200 -WSYRFSARAKNAGWRIDYFCVSESLKDRLEDAKI------LTDIMGSDHCPVELDI 249
>gi|373471031|ref|ZP_09562109.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371761191|gb|EHO49827.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 259
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 123/231 (53%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+G A+ K +P V++ + +++ +GRVI AE+E FY++ Y
Sbjct: 58 YYDYWNYAQKKGYSGVAVFTKD--KPLNVTYGI--GIEEHDNEGRVITAEYEDFYMITCY 113
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + + R W+ +++L+ KP+I+CGDLNV+H EID+ +P
Sbjct: 114 TPNS--QRGLTRLEYRMTWEDAFLKYILELEKNKPVIFCGDLNVAHTEIDLKNP------ 165
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER + IL G +D++R L+ +K +SW + +G
Sbjct: 166 ---------KTNRKNAGFTDEERAKMDVILSSG-FVDSFRVLYPDK--TDAYSW-WSYMG 212
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + RIDYFIVS +LKDRI ++ +GSDHCPV L++
Sbjct: 213 GARAKNVGWRIDYFIVSAKLKDRIKEAKIHSE------IFGSDHCPVELDI 257
>gi|375086371|ref|ZP_09732783.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
gi|374565408|gb|EHR36677.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
Length = 251
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 142/271 (52%), Gaps = 35/271 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSK-YAGTAL 58
+ A +K + Q L D +E K+ + L P +K Y W+ A+ K Y+GTA+
Sbjct: 11 LRACMNKGFMETFQTLDADIFCLQETKMQPHQLELDLPRYKQY---WNSAEKKGYSGTAI 67
Query: 59 LVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 118
K +P VS+ L +++ +GRVI EF+ F+++ Y PN+ K E R +
Sbjct: 68 FTK--VEPLNVSYGL--GIEEHDHEGRVITLEFDKFFMVCVYTPNS--KRELERLDYRMQ 121
Query: 119 WDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGF 177
W+ + ++++ + KP++ CGDLNV+H+EID+ +P K + GF
Sbjct: 122 WEDAFRNYLVELNKQKPVVMCGDLNVAHKEIDLKNP---------------KTNRRSAGF 166
Query: 178 TIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 237
T ER + +L+ G +D +R+L+ +K + WS + RIDYFIVS+++
Sbjct: 167 TDEERSKMTELLQAG-FVDTFRYLYPDKTSIYSW-WSYMRKARENNAGWRIDYFIVSKDI 224
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
++ I + GI E F+GSDHCPVSLEL
Sbjct: 225 EENI-----KEAGIHNE-FFGSDHCPVSLEL 249
>gi|332263793|ref|XP_003280936.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263795|ref|XP_003280937.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263797|ref|XP_003280938.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263799|ref|XP_003280939.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|441667374|ref|XP_004091971.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
Length = 318
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 130/234 (55%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ +++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEALRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|212694611|ref|ZP_03302739.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|237711123|ref|ZP_04541604.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|265750710|ref|ZP_06086773.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|345515228|ref|ZP_08794734.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|423228072|ref|ZP_17214478.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|423239233|ref|ZP_17220349.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
gi|423243335|ref|ZP_17224411.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|212663112|gb|EEB23686.1| exodeoxyribonuclease III [Bacteroides dorei DSM 17855]
gi|229434345|gb|EEO44422.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|229454967|gb|EEO60688.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|263237606|gb|EEZ23056.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|392637108|gb|EIY30983.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|392645342|gb|EIY39070.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|392647020|gb|EIY40726.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
Length = 252
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 123/232 (53%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ YQ +W+ A+ K Y+GTA+ K +P V++ L +++ +GRVI E E++YL+
Sbjct: 48 FEGYQSYWNYAEKKGYSGTAIFSK--VKPLSVTYGL--GIEEHDHEGRVITLELESYYLI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ +EE R KWD + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 104 TVYTPNS--QEELRRLDYRMKWDDDFRAYLKKLEEKKPVIVCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L+ G D +R+ + E++ + WS
Sbjct: 159 ------------KTNRKNAGFTDEERAKFTTLLESG-FTDTFRYFYPEQEGIYSW-WSYR 204
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S+ LKD++ ++ + GSDHCPV L +
Sbjct: 205 FKAREKNAGWRIDYFLTSDSLKDKLRGAQIHTDIL------GSDHCPVELTI 250
>gi|210622632|ref|ZP_03293292.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
gi|210154133|gb|EEA85139.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
Length = 250
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ AD K Y+GTA+ KK +P V++ + +++ +GRVI EFE FY + Y
Sbjct: 50 YESYWNYADKKGYSGTAIFTKK--KPLSVAYGI--GIDEHDHEGRVITLEFEDFYFVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W+ + ++ S KP++ CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QTELKRLEYRMRWEDDFRAYLKNLDSKKPVVMCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F L+ G ID +R+ + D + +S WS
Sbjct: 158 ---------KTNRKNAGFTDEERNKFTEFLESG-FIDTFRYFY--PDAEGMYSWWSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF SE +KDR+++ ++ + GSDHCPV L +
Sbjct: 206 ARKNNAGWRIDYFCTSESMKDRLVSAKIHNEVL------GSDHCPVELVI 249
>gi|304384068|ref|ZP_07366522.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
gi|304334784|gb|EFM01060.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
Length = 250
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 32/233 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y+ +W+ A+ K Y+GTA+ + QP+ VS+ + A +E GR+I E FYL+
Sbjct: 47 FEGYEAYWNYAEKKGYSGTAIYTRH--QPQSVSYGMGVEAHDHE--GRIITLEMPGFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++ R +W++ +++ + K P+I CGD+NV+HEEID+ +P
Sbjct: 103 TVYTPNS--QDGLKRLAYRMQWEEDFLQYIKKLDAKKPVIICGDMNVAHEEIDIKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L EG D +R+ + E+ +S+
Sbjct: 158 ------------KTNRHNAGFTDEERNKFTTLLSEG-FTDTFRYKYPEQVRYSWWSYRFQ 204
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
K G RIDYF+VS LK +II ++ GSDHCPV +EL+
Sbjct: 205 ARAKNAG--WRIDYFVVSNRLKPQIIDAKIH------TAILGSDHCPVEVELN 249
>gi|429766260|ref|ZP_19298534.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
gi|429185240|gb|EKY26229.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
Length = 250
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ KK +P V + L +++ +GRVI EFE F+++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKK--EPLSVRYGL--GIEEHDKEGRVITLEFEDFFMI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ + E R KW+ ++++ KP+I CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--QNELARLDYRMKWEDDFKKYLKHLEKSKPVIVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
N+++ GFT ER++ ++L +G ID +R+ + E + WS
Sbjct: 158 ---------TTNRKN---AGFTDEEREKLTSLLNDG-FIDTFRYFYPETTGVYSW-WSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE LKDR+ + ++ + GSDHCPV L +
Sbjct: 204 FNARKNNAGWRIDYFVVSESLKDRLESAKIHTEVL------GSDHCPVELTI 249
>gi|429738347|ref|ZP_19272158.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
gi|429160421|gb|EKY02885.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
Length = 249
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 118/233 (50%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F YQ +W+ AD + Y+GTA+ + P V++ + A +E GRVI E FYL+
Sbjct: 47 FDGYQSYWNYADKRGYSGTAIYTRHT--PLSVTYGIGVDAHDHE--GRVITLEMNDFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++E R W+ + F+L KP+I CGD+NV+H+EID+ +P
Sbjct: 103 TVYTPNS--QDELKRLDYRMTWEDDFKTFLLALDARKPVIVCGDMNVAHQEIDIKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G D +RF++ E + +S WS
Sbjct: 158 ------------KTNRRNAGFTDEEREKMTVLLDSG-FTDTFRFMYPE---EVTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VS+ LK +I ++ + GSDHCPV L+L
Sbjct: 202 RFKARERNTGWRIDYFLVSDRLKPQIADAKIHTDIL------GSDHCPVELDL 248
>gi|304438523|ref|ZP_07398463.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368606|gb|EFM22291.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 250
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 132/271 (48%), Gaps = 35/271 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA K + +EL D +E K+ +A L P ++ Y ++S Y+GTA+
Sbjct: 11 LRAALKKGFMEAFKELDADAFCLQETKMQEGQAILDLPGYEQY--FYSAEKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V++ + +++ +GRVI EF YL+ Y PN K R W
Sbjct: 69 TR--VKPLSVAYGIGIP--EHDHEGRVITMEFNDVYLVTVYTPNA--KRALERLDYRMTW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + F+L K P++ CGDLNV+H EID+ +P K + GFT
Sbjct: 123 EDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP---------------KSNRRNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER +F +L G +D +R L+ D+ ++ WS + RIDYF+VSEEL
Sbjct: 168 DEERGKFTELLNAG-FVDTFRALY--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEEL 224
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+DRI A E+ +GSDHCPVSL L
Sbjct: 225 RDRIAAAEIHAD------VFGSDHCPVSLTL 249
>gi|345022885|ref|ZP_08786498.1| exodeoxyribonuclease III Xth [Ornithinibacillus scapharcae TW25]
Length = 252
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 118/230 (51%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K F+P V + L + E GR++ EFE F+L+N Y
Sbjct: 50 YHQYWNYAEKKGYSGTAVFTK--FKPISVKYGLSNEESQVE--GRILTLEFENFFLINVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + + R +W+ + E VL KP++ CGDLNV+H EID+ +
Sbjct: 106 TPNS--QRDLARLDVRLEWEDVLLEHVLAHDRIKPVVLCGDLNVAHREIDIRNY------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K ++G GFT ER++ L G ID R+ H + + + WS
Sbjct: 158 ---------KSNYGNSGFTDEEREKMTRFLNAG-FIDTLRYFHPDTEGIYTW-WSYMKTV 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYFIVSE L++++I + +GSDHCP+ L++S
Sbjct: 207 RERNIGWRIDYFIVSERLREKLIDSKAD------TAIFGSDHCPIVLDIS 250
>gi|444522078|gb|ELV13303.1| DNA-(apurinic or apyrimidinic site) lyase [Tupaia chinensis]
Length = 318
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 131/238 (55%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+
Sbjct: 108 LQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFD 163
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVS 151
F L+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+
Sbjct: 164 KFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLR 221
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L D++R L+ + F
Sbjct: 222 NPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPDTPYAYTF 266
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 267 -WTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|423669305|ref|ZP_17644334.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|423674566|ref|ZP_17649505.1| exodeoxyribonuclease [Bacillus cereus VDM062]
gi|401298432|gb|EJS04032.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|401310117|gb|EJS15450.1| exodeoxyribonuclease [Bacillus cereus VDM062]
Length = 252
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 125/232 (53%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EF+ FY++ Y
Sbjct: 51 YYTYWNYAVKKGYSGTAIFTKK--EPISVTYGL--GIEEHDQEGRVITLEFDDFYMITLY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W+ + ++ + KP+I+CGDLNV+H+E+D+ +P
Sbjct: 107 TPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER++F +L+ G ID YR+L+ D + +SW +
Sbjct: 159 ---------KSNRKNPGFSDEEREKFTCVLEAG-FIDTYRYLY--PDQEGAYSWWSYRMD 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R K + R+DYF++SE LK +I ++ + GSDHCPV L ++
Sbjct: 207 A-RAKNIGWRLDYFVISERLKHKITDAKINSEVM------GSDHCPVELHIN 251
>gi|336396024|ref|ZP_08577423.1| exonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 253
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 136/272 (50%), Gaps = 36/272 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ A KD Q+L D + +E K+ + L P + Y ++ Y+GTA+
Sbjct: 11 LRAVVKKDFVTTFQQLNADVFSIQETKMQAGQLDLDLPGYHQY--FFYAKKKGYSGTAVF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K K +E+ ++ +GR I EF +YL+N+Y PN+ K + + R ++
Sbjct: 69 SKAEPISVKQGLGIEE----FDDEGRTITLEFPDYYLINSYTPNSQPKLKRVDY--RMRY 122
Query: 120 DKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
D ++E++LQ S KP+I CGDLNV+HEEID+ +P K + PGF+
Sbjct: 123 DDVLREYMLQLSADKPVILCGDLNVAHEEIDLKNP---------------KTNHKNPGFS 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER +F +L G ID++R LH + + +S WS + RIDYF+VS+
Sbjct: 168 DQERDKFSELLDSG-FIDSFRSLHPQ---EIKYSWWSYRFNARKNNAGWRIDYFVVSKNG 223
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ I ++ L YGSDHCP+ L+L+
Sbjct: 224 QQLIQDADI------LTDIYGSDHCPIELDLN 249
>gi|253580808|ref|ZP_04858071.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847878|gb|EES75845.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 251
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 122/231 (52%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ + Y+GTA+ KK +P V + + K++ +GRVI E+E FYL+ Y
Sbjct: 50 YYQYWNYANRRGYSGTAVFTKK--EPLSVVYGI--GIEKHDKEGRVITLEYEKFYLVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R W++ ++L+ KP+I CGD NV+H+EID+ +P
Sbjct: 106 TPNS--QSELRRLEYRMHWEEDFLAYLLKLQESKPVICCGDFNVAHQEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER FG +L+ G ID +R+ + D++ +S WS
Sbjct: 158 ---------KTNRKNAGFTDEERACFGKVLESG-FIDTFRYFY--PDVEGRYSWWSYRFK 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYFI S +LKD++ E+ GSDHCPV L+++
Sbjct: 206 AREKNAGWRIDYFITSPQLKDKLKGAEIHSE------IMGSDHCPVELQIT 250
>gi|223278420|ref|NP_001138591.1| DNA-(apurinic or apyrimidinic site) lyase [Canis lupus familiaris]
Length = 318
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P +Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+TF L
Sbjct: 112 PGLPHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDTFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|294055155|ref|YP_003548813.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
gi|293614488|gb|ADE54643.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
Length = 262
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 123/234 (52%), Gaps = 39/234 (16%)
Query: 44 IWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
++W+ A+ K Y+GTA++ + +P V + L K++ +GRVI AEFE +YL+ Y P
Sbjct: 57 VYWNCAEKKGYSGTAIISQ--IEPISVRYGLGIE--KHDQEGRVITAEFEDYYLVTVYTP 112
Query: 103 NNGWKEEENSFQRRRKWDKRIQE----FVLQCSG----KPLIWCGDLNVSHEEIDVSHPE 154
N+ +E +R R+ D R E F+ G KP+++CGDLNV+H EID+++P
Sbjct: 113 NSQNHDEN---KRPRRLDYRTLEWDVDFLAYVKGLEVTKPVVFCGDLNVAHTEIDLANP- 168
Query: 155 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWS 214
K + GFT ER RF AI++ G ID +R L+ ++ + WS
Sbjct: 169 --------------KTNRKNAGFTDEERGRFDAIIEAG-FIDTFRHLYPDRTEQYSW-WS 212
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF VS+ +K++I + L GSDHCPV L L
Sbjct: 213 YRAAARQRNIGWRIDYFCVSDAVKNQIRDATI------LADTLGSDHCPVGLRL 260
>gi|325854960|ref|ZP_08171676.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
gi|325483938|gb|EGC86878.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
Length = 249
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ AD K Y+GTA+ K +P V++ + +++ +GRVI E + FYL+
Sbjct: 47 FPGYASYWNYADKKGYSGTAIFTKH--KPLDVTYGIGMD--EHDHEGRVITLEMDDFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++ R KW+K Q+++ + KP++ CGD+NV+HEEID+ +P
Sbjct: 103 TVYTPNS--QDGLRRLDYRMKWEKDFQDYLHRLDRKKPVVVCGDMNVAHEEIDIKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G ID +R L+ E+ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEEREKMTQLLDSG-FIDTFRTLYPEQ---VTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF++SE L+DR+ ++ GSDHCPV ++L
Sbjct: 202 RFRARERNTGWRIDYFLISERLRDRLEDAKIHTE------IMGSDHCPVEVDL 248
>gi|213021237|ref|NP_001132943.1| DNA-(apurinic or apyrimidinic site) lyase [Sus scrofa]
gi|210062866|gb|ACJ06403.1| APEX nuclease 1 [Sus scrofa]
Length = 318
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 136/253 (53%), Gaps = 33/253 (13%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 77
+TK S + ++ LS P +Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCSENKLPAELQELSGLP---HQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 149
Query: 78 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 136
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASHKPLV 206
Query: 137 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 196
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D
Sbjct: 207 LCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLAD 251
Query: 197 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 256
++R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 252 SFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL----- 305
Query: 257 YGSDHCPVSLELS 269
GSDHCP++L L+
Sbjct: 306 -GSDHCPITLYLA 317
>gi|32266427|ref|NP_860459.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
gi|32262477|gb|AAP77525.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
Length = 252
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 121/236 (51%), Gaps = 35/236 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+NY+ +W+ A+ K Y+G +L K QP V++ + T ++ +GR+I AE+ FYL+
Sbjct: 47 FENYKEYWNSAEKKGYSGVVILSKT--QPINVAYDMGITY--HDKEGRIITAEYPHFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ K E R KW+ + FV K +I CGDLNV+H+EID+ +P
Sbjct: 103 NVYTPNS--KRELERLDYRMKWEDDFRAFVKNLENHKSVIICGDLNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER + A+L G ID +R+ + + +SW +
Sbjct: 158 ------------KTNRRNAGFTDEERNKMSALLDAG-FIDTFRYFYPT--LTGAYSW-WS 201
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+GK R RIDYF+ S+ L + + H +GSDHCPV LEL +
Sbjct: 202 YMGKARENNTGWRIDYFLCSQSLTPSLKDANIYPH------IFGSDHCPVGLELKQ 251
>gi|227512799|ref|ZP_03942848.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227083999|gb|EEI19311.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
Length = 252
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 135/268 (50%), Gaps = 33/268 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A KD + Q+L D +E K+ + P Y+ +++ A+ K Y+GTA+
Sbjct: 11 LRAVVKKDFAEIFQKLDADFFCIQETKMQEGQLKLDLP--GYRQYFNYAERKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K +P VS+ ++ A +++ +GR I E+ FYL+ +Y PN+G K + F R W
Sbjct: 69 AKD--EPLTVSYGIQ--APEFDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGW 122
Query: 120 DKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
DK ++ Q S KP+I CGDLNV+H EID+ +P+ + GFT
Sbjct: 123 DKAFHAYLNQLDSHKPVILCGDLNVAHYEIDLKNPQ---------------SNHHNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER+ F +L +G +D +R + +K+ D WS + R RIDYF+ S+ L
Sbjct: 168 DEERQSFTKLLDQG-FMDTFRHFYPDKE-DIYSWWSYRFHSRDRNAGWRIDYFVTSKRLA 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSL 266
D I ++ L +GSDHCPV L
Sbjct: 226 DHISDSKI------LTDIFGSDHCPVEL 247
>gi|417409485|gb|JAA51243.1| Putative exodeoxyribonuclease iii, partial [Desmodus rotundus]
Length = 301
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 130/238 (54%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P ++Q W + +D + Y+G +L ++C P KVS+ + + +++ +GRVI+AE++
Sbjct: 91 LQELPGLSHQYWSAPSDKEGYSGVGILSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYD 146
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVS 151
F L+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+
Sbjct: 147 AFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGVASHKPLVLCGDLNVAHEEIDLR 204
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L+D++R L+ F
Sbjct: 205 NPK------------GNKKN---AGFTPQERQGFGELLQAVPLVDSFRHLYPNTAYAYTF 249
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF+VS L + +++ + GSDHCP++L L+
Sbjct: 250 -WTYMMNARSKNVGWRLDYFLVSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 300
>gi|432112926|gb|ELK35512.1| DNA-(apurinic or apyrimidinic site) lyase [Myotis davidii]
Length = 320
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 129/238 (54%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AE++
Sbjct: 110 LQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEYD 165
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVS 151
F L+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+
Sbjct: 166 AFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLR 223
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L D++R L+ F
Sbjct: 224 NPKG------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF 268
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF+VS L + +++ + GSDHCP++L L+
Sbjct: 269 -WTYMMNARSKNVGWRLDYFLVSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 319
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
YQ W S Y+GTAL K +P VS+ + +++ +GR+I AEF+ +L+ Y
Sbjct: 54 YQYWNSAIKKGYSGTALFTK--IKPISVSYGM--NIEEHDQEGRLITAEFKNHFLVVCYT 109
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ + + + R KW+ + ++L+ + KP+I CGDLNV+H+EID+++P
Sbjct: 110 PNS--QRQLARLEYRMKWENDFKNYLLKLTESKPVILCGDLNVAHKEIDLANPS------ 161
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
+ GFT ERK+F +L+ G D +R+L+ +K D WS +
Sbjct: 162 ---------SNHKNAGFTDDERKKFSTLLENG-FTDTFRYLYPDKK-DAYSWWSYFAKSR 210
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R RIDYF+VS++LK++I ++ E++ GSDHCPV L
Sbjct: 211 ERNIGWRIDYFLVSDKLKNKIKDAKIHP---EIQ---GSDHCPVELTF 252
>gi|392395397|ref|YP_006431999.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526475|gb|AFM02206.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
Length = 250
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 118/235 (50%), Gaps = 33/235 (14%)
Query: 38 PFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
PF+ Y +W+ A K Y+GTA+ K +P VS+ + K +++ +GRVI EFETF
Sbjct: 44 PFQLEGYYAYWNFAQKKGYSGTAVFTKN--EPLSVSYGIGKE--EHDQEGRVITLEFETF 99
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
YL+ YAPN+ + R W++ ++ KP+I+CGDLNV+H EID+ +P
Sbjct: 100 YLVTVYAPNS--QRGLARLDYRMTWEEEFLSYLKSLEKSKPVIFCGDLNVAHTEIDLKNP 157
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
K + GF+ ER +F +LK G ID +R + +K D W
Sbjct: 158 ---------------KSNRKNAGFSDEERAKFSGLLKNG-FIDTFRHFYPDK-TDSYTWW 200
Query: 214 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
S + RIDYF VSE LK+ + + + GSDHCPV LE+
Sbjct: 201 SYMFNARTNNAGWRIDYFCVSESLKNEL------KDALIYDKIMGSDHCPVGLEI 249
>gi|170051904|ref|XP_001861978.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872934|gb|EDS36317.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 340
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 32/233 (13%)
Query: 39 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
K Y +W YAG A+ KK P VS+ L + + DGR++ AE+E FYL+
Sbjct: 137 IKGYHPYWLCKPGGYAGVAIYSKK--MPFNVSYGLGDA--EQDEDGRLLTAEYEKFYLVC 192
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN G K + +R +WD++ +++ K P+I CGD+NV+H EID+++P+
Sbjct: 193 VYVPNAGRKLV--TLPKRMRWDEKFLQYLRDLDAKKPVILCGDMNVAHAEIDLANPK--- 247
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSGN 216
NK++ GFT ER +L G +D +R + E+ F ++ GN
Sbjct: 248 ---------TNKKN---AGFTQEERDGMTNLLSHG-FVDTFRQRYPEQKAAYTFWTYMGN 294
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
K G R+DYFI SE L R++ ++ G YGSDHCP++L L+
Sbjct: 295 ARAKNVG--WRLDYFIASERLAGRVVDSVIR------PGVYGSDHCPITLLLN 339
>gi|345884610|ref|ZP_08836014.1| exodeoxyribonuclease [Prevotella sp. C561]
gi|345042603|gb|EGW46699.1| exodeoxyribonuclease [Prevotella sp. C561]
Length = 249
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 135/271 (49%), Gaps = 36/271 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A KD + ++L D +E K+ F Y+ +W+ AD K Y+GTA+
Sbjct: 11 LRACVGKDFEQQFKDLNADFFCLQETKM--QAGQLDLSFPGYESYWNYADKKGYSGTAIY 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K +P V++ ++ +++ +GRVI E + FYL+ Y PN+ ++ R KW
Sbjct: 69 TKH--KPLNVTYGIDID--EHDHEGRVITLEMDDFYLITVYTPNS--QDGLRRLDYRMKW 122
Query: 120 DKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
++ Q ++ + KP+I CGD+NV+H+EID+ +P K + GFT
Sbjct: 123 EEDFQAYLHRLDAIKPVIVCGDMNVAHQEIDLKNP---------------KTNHKNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER++ +L G ID +R L+ EK +S WS + + RIDYF++SE L
Sbjct: 168 DEEREKMTQLLSNG-FIDTFRTLYPEK---VTYSWWSYRFRAREKNTGWRIDYFLISERL 223
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
KDR+ ++ GSDHCP+ + L
Sbjct: 224 KDRLEDAKIHTE------IMGSDHCPIEITL 248
>gi|384136257|ref|YP_005518971.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290342|gb|AEJ44452.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 260
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 124/247 (50%), Gaps = 33/247 (13%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
+ P + YQ +W+ A+ K Y+GTA+ + P V + +P+GR+I EF
Sbjct: 44 IQLPIGEAYQQFWNYAERKGYSGTAVFTR--MPPLDVRYGFGNGV---DPEGRIITLEFP 98
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVS 151
+FY++ Y PN K + + R +W+ + ++ KP+I CGDLNV+H+EID+
Sbjct: 99 SFYVVTVYTPNA--KRDLSRLPYRLEWEDAFRAYLCALDREKPVIACGDLNVAHQEIDIK 156
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+ K + G GFT ER + +L G +D +R L+ + D
Sbjct: 157 NA---------------KSNRGNSGFTDEERAKMTELLDAG-FVDTFRALYPDV-TDKYT 199
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS-E 270
WS P + R RIDYF+VSE L+D I+ + H + GSDHCPV LE++ E
Sbjct: 200 WWSNMPRVRERNIGWRIDYFLVSERLRDCILDARIDDHVL------GSDHCPVVLEMALE 253
Query: 271 ASSDSEK 277
A DS K
Sbjct: 254 AWKDSGK 260
>gi|366053865|ref|ZP_09451587.1| exodeoxyribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 256
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 129/268 (48%), Gaps = 32/268 (11%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ AA + +L D +E KL L + P NY +W+ AD K Y+GTA+
Sbjct: 11 LRAAVTHGFMDTFNQLDADFFCVQETKLQLGQIDLKLP-DNYYQYWNYADKKGYSGTAIF 69
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K K ++ SL +++ +GRVI E+ +FYL+ Y PN+G + + F R+ W
Sbjct: 70 TKH----KPLNASLGIGIDEFDHEGRVITLEYPSFYLITCYTPNSGQQLKRLDF--RQNW 123
Query: 120 DKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+K +++ Q S K +I+CGDLNV+HE ID+ +P + GFT
Sbjct: 124 NKAFLDYINQLSAKKDVIFCGDLNVAHETIDLKNP---------------SSNHHAAGFT 168
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER F +L E +D YR + E + WS + R RIDYF+ S L
Sbjct: 169 DEERNDFTHLL-ESNFVDTYRHFYPEVTEQYSW-WSYRFHSRDRNAGWRIDYFVTSTGLT 226
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSL 266
D+++ ++ +GSDHCPV L
Sbjct: 227 DQLVDAKIHSE------IFGSDHCPVEL 248
>gi|423311909|ref|ZP_17289846.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
gi|392689288|gb|EIY82566.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
Length = 252
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 124/232 (53%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y +W+ A+ K Y+GTA+ K +P V++ L +++ +GRVI E E+FYL+
Sbjct: 48 FEGYHSYWNYAEKKGYSGTAIFSK--VKPLSVTYGL--GIEEHDHEGRVITLELESFYLI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ +EE R KW+ + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 104 TVYTPNS--QEELRRLDYRMKWEDDFRAYLKKLEEKKPVIVCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L+ G D +R+ + E++ + WS
Sbjct: 159 ------------KTNRKNAGFTDEERTKFTTLLESG-FTDTFRYFYPEQEGIYSW-WSYR 204
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S+ LKDR ++G I + F GSDHCPV L +
Sbjct: 205 FKAREKNSGWRIDYFLTSDSLKDR-----LKGAHIYTDIF-GSDHCPVELTI 250
>gi|302388430|ref|YP_003824252.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
gi|302199058|gb|ADL06629.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
Length = 251
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 123/229 (53%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTAL K+ +P V++ + A +++ +GRVI AE+ +Y++ Y
Sbjct: 51 YHQYWNYAEKKGYSGTALFTKE--KPLSVAYGI--NAEEHDREGRVIAAEYPEYYVVTCY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--QNELARLPYRLTWEDAVLAYLKKLEEKKPVIFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L+ G ID YR+ + E++ + WS
Sbjct: 159 ---------KTNRKNAGFTDEEREKFTVLLESG-FIDTYRYFYPEQEGIYSW-WSYRFSA 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LKDR+ + + + GSDHCPV L +
Sbjct: 208 RKKNAGWRIDYFCVSESLKDRLASAAIHTEVL------GSDHCPVELVI 250
>gi|125490347|ref|NP_001074954.1| DNA-(apurinic or apyrimidinic site) lyase [Pan troglodytes]
gi|397481065|ref|XP_003811777.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481067|ref|XP_003811778.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481069|ref|XP_003811779.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|146286033|sp|A1YFZ3.1|APEX1_PANPA RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|146286034|sp|A2T6Y4.1|APEX1_PANTR RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|219474|dbj|BAA02633.1| APEX nuclease [Homo sapiens]
gi|1710232|gb|AAB50212.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|12803075|gb|AAH02338.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|14198174|gb|AAH08145.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|17939646|gb|AAH19291.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|30583311|gb|AAP35900.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|61358640|gb|AAX41599.1| APEX nuclease 1 [synthetic construct]
gi|61362429|gb|AAX42220.1| APEX nuclease 1 [synthetic construct]
gi|61362434|gb|AAX42221.1| APEX nuclease 1 [synthetic construct]
gi|121483845|gb|ABM54218.1| APEX1 [Pan paniscus]
gi|123981822|gb|ABM82740.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|123996645|gb|ABM85924.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|124111123|gb|ABM91939.1| APEX1 [Pan troglodytes]
gi|208965824|dbj|BAG72926.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|410220880|gb|JAA07659.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220882|gb|JAA07660.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220884|gb|JAA07661.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256572|gb|JAA16253.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256574|gb|JAA16254.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256576|gb|JAA16255.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294028|gb|JAA25614.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294030|gb|JAA25615.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294032|gb|JAA25616.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|1090503|prf||2019234A APEX nuclease
Length = 318
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 129/234 (55%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|292670448|ref|ZP_06603874.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
gi|292647858|gb|EFF65830.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
Length = 250
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 131/270 (48%), Gaps = 33/270 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA K ++ +EL D +E K+ +A L P ++ Y ++S Y+GTA+
Sbjct: 11 LRAALKKGFMESFKELNADVFCLQETKMQEGQAILDLPGYEQY--FYSAEKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P VS+ + +++ +GRVI E YL+ Y PN K R W
Sbjct: 69 TR--VKPLSVSYGIGIE--EHDNEGRVITMELPDVYLVTVYTPNA--KRALERLDYRMAW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + F+L K P++ CGDLNV+H EID+ +P K + GFT
Sbjct: 123 EDSFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP---------------KSNRRNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER +FG +L G +D +R L+ ++ + WS + RIDYF+VS EL+
Sbjct: 168 DEERGKFGELLAAG-FVDTFRALYPDRTGAYTW-WSYLRHARETNAGWRIDYFLVSAELR 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
DRI A E+ +GSDHCPVSL L
Sbjct: 226 DRIAAAEIHSD------IFGSDHCPVSLTL 249
>gi|297694584|ref|XP_002824554.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Pongo abelii]
gi|395745632|ref|XP_003778302.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|395745635|ref|XP_003778303.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|146286035|sp|A2T7I6.1|APEX1_PONPY RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|124054149|gb|ABM89264.1| APEX1 [Pongo pygmaeus]
Length = 318
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 129/238 (54%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+
Sbjct: 108 LQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFD 163
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVS 151
+F L+ Y PN G + R++WD+ + F+ S KPL+ CGDLNV+HEEID+
Sbjct: 164 SFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLR 221
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L D++R L+ F
Sbjct: 222 NPKG------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF 266
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 267 -WTYMMNARSKNVGWRLDYFLLSHSLLTALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|30585287|gb|AAP36916.1| Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1
[synthetic construct]
gi|60653967|gb|AAX29676.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 129/234 (55%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|468371|gb|AAA21019.1| apurinic/apyrimidinic endonuclease [Rattus norvegicus]
Length = 316
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 129/238 (54%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE
Sbjct: 106 LQELPGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFE 161
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVS 151
+F L+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+
Sbjct: 162 SFILVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLR 219
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT E + FG +L+ L D++R L+ F
Sbjct: 220 NPKG------------NKKN---AGFTPQEAQGFGEMLQAVPLADSFRHLYPNTAYAYTF 264
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S+ L + +++ + GSDHCP++L L+
Sbjct: 265 -WTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKIRSKAL------GSDHCPITLYLA 315
>gi|335430178|ref|ZP_08557073.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
gi|334888594|gb|EGM26891.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
Length = 251
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 136/261 (52%), Gaps = 42/261 (16%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
E+ D A +E K+ + F+ Y +W+ AD K Y+GT + K+ +P V +
Sbjct: 24 NEMNADLFAIQETKM--QEEQKTFDFEGYHEFWNCADKKGYSGTLIYSKQ--KPLNVVYG 79
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 131
++ + KY +GR+I EF+ F+ + Y PN+ + R +++ + ++ + S
Sbjct: 80 IDGS--KYNDEGRIITLEFKNFFFVTAYVPNS--QRSLARLDYRMEFEDDFRAYLKKLDS 135
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP+I CGDLNV+H EID+++P K + GFTI ER+++ ++L E
Sbjct: 136 LKPVIMCGDLNVAHREIDLTNP---------------KNNEKNAGFTIEERRKYQSLLDE 180
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK----DRIIACEMQ 247
G D+YR+LH EK +S+ N + R RIDYF++S +L+ D II + +
Sbjct: 181 G-FTDSYRYLHPEKVEYSWWSYMFN--ARKRNIGWRIDYFVISNKLRGQLNDSIIHTQTE 237
Query: 248 GHGIELEGFYGSDHCPVSLEL 268
GSDHCP+SL++
Sbjct: 238 ----------GSDHCPISLDI 248
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|345520248|ref|ZP_08799647.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 124/232 (53%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y +W+ A+ K Y+GTA+ K +P V++ L +++ +GRVI E E+FYL+
Sbjct: 48 FEGYHSYWNYAEKKGYSGTAIFSK--VKPLSVTYGL--GIEEHDHEGRVITLELESFYLI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ +EE R KW+ + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 104 TVYTPNS--QEELRRLDYRMKWEDDFRAYLKKLEEKKPVIVCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L+ G D +R+ + E++ + WS
Sbjct: 159 ------------KTNRKNAGFTDEERAKFTTLLESG-FTDTFRYFYPEQEGIYSW-WSYR 204
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S+ LKDR ++G I + F GSDHCPV L +
Sbjct: 205 FKAREKNSGWRIDYFLTSDSLKDR-----LKGAHIYTDIF-GSDHCPVELTI 250
>gi|283796572|ref|ZP_06345725.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|291075985|gb|EFE13349.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|295092540|emb|CBK78647.1| exodeoxyribonuclease III [Clostridium cf. saccharolyticum K10]
gi|295115277|emb|CBL36124.1| exodeoxyribonuclease III [butyrate-producing bacterium SM4/1]
Length = 251
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 120/230 (52%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +WS AD K Y+GTAL K+ +P V + L A +E GRVI AE+E +Y+L Y
Sbjct: 51 YYQYWSYADKKGYSGTALFSKE--EPISVVYGLGIDAHDHE--GRVITAEYEDYYVLTCY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ ++ + KP+I+CGDLNV+H EID+ +P
Sbjct: 107 TPNS--QNELARLPYRMEWEDAFLAYLKKLEEKKPVIFCGDLNVAHREIDLKNPR----- 159
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
N+++ GFT ER +F A+L G ID YR H D + +S WS
Sbjct: 160 -------TNRKN---AGFTDEERGKFSALLDAG-FIDTYR--HFYPDTEGVYSWWSYRFK 206
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE L+DR+++ + GSDHCPV L +
Sbjct: 207 AREKNAGWRIDYFCVSESLEDRLVSASIHTE------IMGSDHCPVELVI 250
>gi|344305891|ref|XP_003421623.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Loxodonta africana]
Length = 318
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 129/238 (54%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+
Sbjct: 108 LQDLPGLSHQYWLAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFD 163
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVS 151
F L+ Y PN G R++WD+ ++F+ S KPL+ CGDLNV+HEEID+
Sbjct: 164 AFVLVTVYVPNAG--RGLVRLDYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLR 221
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L D++R L+ + F
Sbjct: 222 NPKG------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPDTAYAYTF 266
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 267 -WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLLLA 317
>gi|419842315|ref|ZP_14365665.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421501617|ref|ZP_15948576.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|386902224|gb|EIJ67066.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402265769|gb|EJU15229.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 250
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ KK +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKK--EPLSVSYGL--GIEEHDQEGRVICLEFEDFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K E R W+ + ++ + + KP++ CGD+NV+HEEID+ +P
Sbjct: 103 TVYTPNS--KNELERLDYRMIWEDEFRNYLSKLNEKKPVVVCGDMNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER +F +L+ G D++R+L+ D +S WS
Sbjct: 158 ------------KTNRRNAGFTDEERNKFTELLQAG-FTDSFRYLY--PDTLHAYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VS + K++I E+ E E GSDHCPV+L L
Sbjct: 203 RANARKNNTGWRIDYFVVSNDWKEQIQEAEIHA---EQE---GSDHCPVALYL 249
>gi|149692696|ref|XP_001505181.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Equus
caballus]
Length = 318
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 129/238 (54%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+
Sbjct: 108 LQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFD 163
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVS 151
F L+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+
Sbjct: 164 AFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLR 221
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L D++R L+ F
Sbjct: 222 NPKG------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF 266
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 267 -WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|162329924|pdb|2O3H|A Chain A, Crystal Structure Of The Human C65a Ape
Length = 285
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L
Sbjct: 79 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVL 134
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 135 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 192
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 193 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 236
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 237 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 284
>gi|358065851|ref|ZP_09152385.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
gi|356695714|gb|EHI57339.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
Length = 251
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 31/234 (13%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P + Y +W+ A+ K Y+GTA+ K+ +P V++ + +++ +GRVI AEF +Y+
Sbjct: 47 PLEGYYQYWNYAEKKGYSGTAMFTKE--EPVSVAYGI--GIEEHDKEGRVITAEFPEYYV 102
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN+ K+ R +W+ ++ KP+I+CGDLNV+H+EID+ +P
Sbjct: 103 VTCYTPNS--KDGLARLPYRMEWEDAFLAYLKGLEEKKPVIFCGDLNVAHQEIDLKNP-- 158
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K + GF+ ER +F +L G ID YR+ + +K + WS
Sbjct: 159 -------------KTNRKNAGFSDEERGKFSDVLAAG-FIDTYRYFYPDKTEVYSW-WSY 203
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYF VSE LKDR+++ ++ +E++ GSDHCPV L +S
Sbjct: 204 RFSARAKNAGWRIDYFCVSEALKDRLVSADIH---MEVQ---GSDHCPVELVIS 251
>gi|410961722|ref|XP_003987428.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Felis catus]
gi|410961726|ref|XP_003987430.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 3
[Felis catus]
gi|410961728|ref|XP_003987431.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 4
[Felis catus]
gi|410961730|ref|XP_003987432.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 5
[Felis catus]
Length = 318
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 130/238 (54%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+
Sbjct: 108 LQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFD 163
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVS 151
+F L+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+
Sbjct: 164 SFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLR 221
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L D++R L+ F
Sbjct: 222 NPKG------------NKKN---AGFTPQERQGFGELLEAVPLADSFRHLYPNTAYAYTF 266
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 267 -WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|375342925|gb|AFA54864.1| exodeoxyribonuclease III [uncultured Eggerthella sp. SMG5]
Length = 261
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 130/267 (48%), Gaps = 43/267 (16%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
EL D A +E KL + P Y +WS A+ K Y+GTA+ K+ +P +V
Sbjct: 24 HELDADVFALQETKLQEGQIEMDLP--GYHQFWSYAERKGYSGTAVFCKE--EPLRVIHE 79
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR-------IQE 125
+ L E GRV++ EFE ++L+N Y PN + E R WD R ++E
Sbjct: 80 VGVPELDTE--GRVVICEFEQYWLVNVYTPNA--QSELARLDHRMAWDDRFRDICKGLEE 135
Query: 126 FVL----QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAE 181
VL + KP++ CGD NV+H+EID+ +P + + G PGF+ E
Sbjct: 136 GVLPDGQAGNAKPVVMCGDFNVAHQEIDLKNP---------------RSNRGNPGFSDEE 180
Query: 182 RKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI 241
R +F +L G ID +R+L+ + + WS + RIDYF+VSE L++++
Sbjct: 181 RAKFTCLLDAG-FIDTFRYLNPATEGAYSW-WSYRFHARANNAGWRIDYFLVSEALREKV 238
Query: 242 IACEMQGHGIELEGFYGSDHCPVSLEL 268
+ GSDHCPVS+EL
Sbjct: 239 QMANIYSE------IMGSDHCPVSVEL 259
>gi|357059246|ref|ZP_09120090.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
gi|355372575|gb|EHG19915.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
Length = 250
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 134/271 (49%), Gaps = 35/271 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA K ++ +EL D +E K+ +A L P ++ Y ++S Y+GTA+
Sbjct: 11 LRAALKKGFMESFKELDADAFCLQETKMQEGQAILDLPGYEQY--FYSAEKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V++ + +++ +GRVI EF YL+ Y PN+ K R W
Sbjct: 69 TR--IRPLSVNYGIGTP--EHDHEGRVITMEFADVYLVTVYTPNS--KNALARLDYRMVW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + F+L K P++ CGDLNV+H EID+ +P K + GFT
Sbjct: 123 EDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNP---------------KSNRRNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER +F +L G +D +R L+ D+ ++ WS + RIDYF+VSEEL
Sbjct: 168 DEERGKFTELLNAG-FVDTFRALY--PDVTGAYTWWSYLRHARETNAGWRIDYFLVSEEL 224
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
++RI A E+ +GSDHCPVSL L
Sbjct: 225 RERIAAAEIHAD------VFGSDHCPVSLTL 249
>gi|340617816|ref|YP_004736269.1| exodeoxyribonuclease III [Zobellia galactanivorans]
gi|339732613|emb|CAZ95881.1| Exodeoxyribonuclease III [Zobellia galactanivorans]
Length = 256
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 123/232 (53%), Gaps = 31/232 (13%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
+Y+++ + A+ K Y+GTA+L KK K ++F+++ +++ +GR+ E+E F+L+N
Sbjct: 52 DYELFCNSAEKKGYSGTAILSKK----KPLTFTVDMGKEEHDTEGRITHVEYEEFHLVNV 107
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN+G R WDK ++ + S KPLI GD NV+H D+++P
Sbjct: 108 YVPNSG--SGLKRLDYRSIWDKDFTAYLKKLSESKPLIITGDFNVAHTANDLANP----- 160
Query: 159 AKLNGYVPPNKEDWGQP-GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
K ++ + GFT E F AILKE L+D++R LH F WS
Sbjct: 161 ----------KSNYNKTSGFTQVEIDGFDAILKELNLVDSFRTLHPTTFHKYTF-WSMRG 209
Query: 218 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYF+VSE + ++ + E+ + GSDHCP+SLE+S
Sbjct: 210 GARGRNVGWRIDYFLVSESIWPKVQSAEIH------DQVMGSDHCPISLEIS 255
>gi|395849480|ref|XP_003797352.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Otolemur
garnettii]
Length = 318
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 130/242 (53%), Gaps = 30/242 (12%)
Query: 30 LMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL 88
L L P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+
Sbjct: 104 LPTELQDLPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIV 159
Query: 89 AEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEE 147
AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEE
Sbjct: 160 AEFDKFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLTSQKPLVLCGDLNVAHEE 217
Query: 148 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 207
ID+ +P+ NK++ GFT ER+ FG +L+ L D++R L+
Sbjct: 218 IDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAY 262
Query: 208 DCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 267
F W+ + + R+DYF++S L + +++ + GSDHCP++L
Sbjct: 263 AYTF-WTYMMNARAKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLY 315
Query: 268 LS 269
L+
Sbjct: 316 LA 317
>gi|367462704|gb|ADJ96599.2| DNA repair enzyme APEX-1 [Camelus dromedarius]
Length = 318
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 136/253 (53%), Gaps = 33/253 (13%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 77
+TK S + ++ LS P +Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCSENKLPPELQELSGLP---HQYWSAPSDKEGYSGVGLLSRQC--PIKVSYGIGEE- 149
Query: 78 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 136
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAEFDAFVLVTVYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLV 206
Query: 137 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 196
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D
Sbjct: 207 LCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLAD 251
Query: 197 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 256
++R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 252 SFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL----- 305
Query: 257 YGSDHCPVSLELS 269
GSDHCP++L L+
Sbjct: 306 -GSDHCPITLYLA 317
>gi|311070625|ref|YP_003975548.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|419820989|ref|ZP_14344593.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
gi|310871142|gb|ADP34617.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|388474900|gb|EIM11619.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
Length = 252
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 120/231 (51%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y ++W+ A+ K Y+GTA+ KK +P V++ L +++ +GR+I EFE Y++ Y
Sbjct: 51 YHVYWNYAEKKGYSGTAIFTKK--EPLAVTYGL--GIKEHDQEGRLITLEFENMYVITVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K R W+ ++ KP++ CGDLNV+H+EID+ +P
Sbjct: 107 TPNA--KRGLERIDYRMDWEDAFLSYIKALDVKKPVVLCGDLNVAHQEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER+RF +L+EG ID +R+LH D + +SW +
Sbjct: 159 ---------KANRKNAGFSDQERERFSQMLEEG-FIDTFRYLH--PDQEGAYSWWSYRMN 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + R+DYFIVSE LK +I ++ + GSDHCPV L +
Sbjct: 207 A-RAKNVGWRLDYFIVSERLKKQIRGAKICNEVM------GSDHCPVELTI 250
>gi|357060646|ref|ZP_09121414.1| exodeoxyribonuclease [Alloprevotella rava F0323]
gi|355375951|gb|EHG23219.1| exodeoxyribonuclease [Alloprevotella rava F0323]
Length = 259
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y+ +W+ A+ K Y+GTA+ K P V++ L +++ +GRVI E + F+L+
Sbjct: 56 FEGYESYWNYAEKKGYSGTAIFTKH--HPLNVTYGLGHE--EHDHEGRVITLEMDNFFLI 111
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++E R W+ +E++L+ + K P+I CGDLNV+H+EID+ +P
Sbjct: 112 TVYTPNS--QDELRRLDYRMTWEDAFREYLLELNKKKPVIVCGDLNVAHQEIDLKNP--- 166
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G D +RF + D+ +S WS
Sbjct: 167 ------------KTNRRNAGFTDEEREKMTQLLNAG-FTDTFRFFN--PDLTGAYSWWSY 211
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+VS L D++++ + +GSDHCPV + L
Sbjct: 212 RFRAREKNAGWRIDYFLVSNCLNDKLVSASIHNE------IFGSDHCPVEIVL 258
>gi|253574957|ref|ZP_04852296.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845413|gb|EES73422.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 251
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 119/229 (51%), Gaps = 32/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A+ K Y+GTA+ + +P V + +E+ YEP+GR+I EFE FYL+ Y
Sbjct: 51 YEQYWNYAEKKGYSGTAVFTR--IKPLSVRYGMEE---DYEPEGRIITLEFEQFYLVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K + + R +W+ R + ++ KP+I CGDLNV+H ID+ +
Sbjct: 106 TPNA--KRDLSRLDYRMEWEDRFRTYLTGLDAVKPVIVCGDLNVAHNPIDIKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G G+T+ ER + +L G ID +R + +++ + WS P
Sbjct: 158 ---------KSNEGNSGYTLEERGKMTELLASG-FIDTFRHFYPDREGVYSW-WSYMPKI 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+ S L A ++Q GI+ GSDHCPVSL +
Sbjct: 207 RERNIGWRIDYFLASSRL-----APKLQDAGIDCH-ILGSDHCPVSLTV 249
>gi|323141860|ref|ZP_08076721.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
gi|322413607|gb|EFY04465.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
Length = 236
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 132/258 (51%), Gaps = 36/258 (13%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE D +E K+ R + F Y+ +W+ A+ K Y+GTA+ K +P V++
Sbjct: 10 QEAAPDIICLQETKM--QREQADFVFPGYEEYWNSAERKGYSGTAVFTK--VKPLAVTYG 65
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 132
L + +++ +GRVI EF +FYL+ Y PN+ K+ R W+ + ++ +
Sbjct: 66 LGQE--EHDKEGRVITLEFASFYLVTVYTPNS--KDGLARLDYRMVWEDVFRAYLQELDA 121
Query: 133 K-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
K P++ CGDLNV+ EEID+ +P K + GFT ER +F LK
Sbjct: 122 KKPVVVCGDLNVAAEEIDLKNP---------------KTNRRNAGFTDEERAKFRE-LKA 165
Query: 192 GRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 250
D++R+LH E + +S WS + + RIDYF+VS+ + D++ + E+
Sbjct: 166 AGFTDSFRYLHPE---EVKYSWWSYRFKAREKNAGWRIDYFVVSDRIADKLQSAEIHNE- 221
Query: 251 IELEGFYGSDHCPVSLEL 268
+GSDHCPVS+EL
Sbjct: 222 -----VFGSDHCPVSIEL 234
>gi|355668893|gb|AER94340.1| APEX nuclease 1 [Mustela putorius furo]
Length = 317
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 137/253 (54%), Gaps = 33/253 (13%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 77
+TK S + + ++ L P ++Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 95 ETKCSENKLPVELQEL---PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 148
Query: 78 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 136
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 149 -EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLV 205
Query: 137 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 196
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D
Sbjct: 206 LCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLAD 250
Query: 197 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 256
++R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 251 SFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL----- 304
Query: 257 YGSDHCPVSLELS 269
GSDHCP++L L+
Sbjct: 305 -GSDHCPITLYLA 316
>gi|410961724|ref|XP_003987429.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Felis catus]
Length = 404
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 129/234 (55%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L
Sbjct: 198 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVL 253
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 254 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 311
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 312 ------------NKKN---AGFTPQERQGFGELLEAVPLADSFRHLYPNTAYAYTF-WTY 355
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 356 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 403
>gi|18375501|ref|NP_001632.2| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375503|ref|NP_542379.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375505|ref|NP_542380.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|346644849|ref|NP_001231178.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|113984|sp|P27695.2|APEX1_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=APE-1; AltName: Full=REF-1;
AltName: Full=Redox factor-1; Contains: RecName:
Full=DNA-(apurinic or apyrimidinic site) lyase,
mitochondrial
gi|13399540|pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399541|pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399606|pdb|1HD7|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIDINIMIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|354459810|pdb|3U8U|A Chain A, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459811|pdb|3U8U|B Chain B, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459812|pdb|3U8U|C Chain C, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459813|pdb|3U8U|D Chain D, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459814|pdb|3U8U|E Chain E, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459815|pdb|3U8U|F Chain F, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|19339022|gb|AAL86909.1|AF488551_1 APEX nuclease (multifunctional DNA repair enzyme) [Homo sapiens]
gi|32022|emb|CAA46925.1| AP endonuclease 1 [Homo sapiens]
gi|178747|gb|AAA58372.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|183780|gb|AAA58629.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|254069|gb|AAB22977.1| Ref-1 [Homo sapiens]
gi|13436404|gb|AAH04979.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|28071072|emb|CAD61917.1| unnamed protein product [Homo sapiens]
gi|54697126|gb|AAV38935.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|60655677|gb|AAX32402.1| APEX nuclease 1 [synthetic construct]
gi|61358645|gb|AAX41600.1| APEX nuclease 1 [synthetic construct]
gi|63100763|gb|AAH95428.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|119586867|gb|EAW66463.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586868|gb|EAW66464.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586869|gb|EAW66465.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586870|gb|EAW66466.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586871|gb|EAW66467.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586872|gb|EAW66468.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|158255636|dbj|BAF83789.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|154484298|ref|ZP_02026746.1| hypothetical protein EUBVEN_02011 [Eubacterium ventriosum ATCC
27560]
gi|149734775|gb|EDM50692.1| exodeoxyribonuclease III [Eubacterium ventriosum ATCC 27560]
Length = 251
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 125/231 (54%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P V + + +++ +GRVI EFE FY++ Y
Sbjct: 50 YYQYWNYAEKKGYSGTAIFTKK--EPMDVKYGI--GIEEHDHEGRVITLEFEDFYMVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ + ++ + KP++ CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QNELKRLDYRMQWEDDFKAYLKKLEESKPVVLCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER++ +L +G ID +R+ + D++ +S WS
Sbjct: 158 ---------KTNRKNAGFTDEEREKMTKLLDDG-FIDTFRYFY--PDLEGKYSWWSYRFK 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYFIVSE LKD+ ++G I E GSDHCP+ L+L+
Sbjct: 206 AREKNAGWRIDYFIVSEALKDK-----LEGADIHTE-ILGSDHCPIELDLN 250
>gi|118138505|pdb|2ISI|A Chain A, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138506|pdb|2ISI|B Chain B, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138507|pdb|2ISI|C Chain C, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|443428279|pdb|4IEM|A Chain A, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428283|pdb|4IEM|B Chain B, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428287|pdb|4IEM|C Chain C, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428291|pdb|4IEM|D Chain D, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
Length = 317
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L
Sbjct: 111 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVL 166
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 167 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 224
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 225 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 268
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 269 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>gi|223278400|ref|NP_788782.2| DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|113912167|gb|AAI22611.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Bos taurus]
gi|296483354|tpg|DAA25469.1| TPA: DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|440900925|gb|ELR51950.1| DNA-(apurinic or apyrimidinic site) lyase [Bos grunniens mutus]
Length = 318
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 138/253 (54%), Gaps = 33/253 (13%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 77
+TK S + + ++ LS ++Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCSENKLPVELQELSG---LSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 149
Query: 78 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 136
+++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLV 206
Query: 137 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 196
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D
Sbjct: 207 LCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTD 251
Query: 197 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 256
++R L+ F W+ + + R+DYF++S+ L + +++ +
Sbjct: 252 SFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKIRSKAL----- 305
Query: 257 YGSDHCPVSLELS 269
GSDHCP++L L+
Sbjct: 306 -GSDHCPITLYLA 317
>gi|60652565|gb|AAX28977.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|299037|gb|AAB26054.1| APEX nuclease=major apurinic/apyrimidinic endonuclease [human,
Peptide, 317 aa]
Length = 317
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L
Sbjct: 111 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVL 166
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 167 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 224
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 225 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 268
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 269 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>gi|219478|dbj|BAA14381.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
Length = 318
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|157830335|pdb|1BIX|A Chain A, The Crystal Structure Of The Human Dna Repair Endonuclease
Hap1 Suggests The Recognition Of Extra-Helical
Deoxyribose At Dna Abasic Sites
Length = 287
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L
Sbjct: 81 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVL 136
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 137 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 194
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 195 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 238
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 239 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 286
>gi|291403439|ref|XP_002718079.1| PREDICTED: APEX nuclease 1 [Oryctolagus cuniculus]
Length = 318
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P +Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L
Sbjct: 112 PGLPHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDAFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ + F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPDTAYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|126651518|ref|ZP_01723722.1| exodeoxyribonuclease [Bacillus sp. B14905]
gi|126591771|gb|EAZ85867.1| exodeoxyribonuclease [Bacillus sp. B14905]
Length = 251
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 37/233 (15%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
+Y+ +W+ A K Y+GTA+ K P V + + + +GR+I E++ FYL+N
Sbjct: 49 DYEQYWNYAQKKGYSGTAIFTKHT--PLSVMYGVGDE--DSQDEGRIITLEYQNFYLVNV 104
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN + + R W+ R+ ++ S KP+++CGDLNV+H EID+ +
Sbjct: 105 YTPNA--QRDLARLPLRLTWEDRLAGYLQDLNSKKPVVYCGDLNVAHTEIDLKNA----- 157
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFSWSGNP 217
K + G GFT ER +F +L G +D++R+ H E D F+W +
Sbjct: 158 ----------KSNVGNSGFTYEERAKFSELLASG-FVDSFRYKHPNETDH---FTW-WSY 202
Query: 218 IGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K R + + RIDYFIVSE+LK++I + H GSDHCP+ L+L
Sbjct: 203 MNKVRERNIGWRIDYFIVSEQLKNQIDQATIHPH------IMGSDHCPIELQL 249
>gi|365130338|ref|ZP_09341407.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
gi|363620249|gb|EHL71547.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
Length = 251
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 125/251 (49%), Gaps = 31/251 (12%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTAL 78
D +E K+ +A SPP +Q W+S Y+GTA+ + +P V + + K
Sbjct: 29 DVVCLQETKMQPGQAEFSPP-GYHQYWYSAEKKGYSGTAVFTR--MEPLSVRYGIGKEEH 85
Query: 79 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 137
+E GR I EFE F+L+N Y PN+ + E R +W+ ++ ++ + KP+++
Sbjct: 86 SHE--GRAITLEFEQFFLVNVYTPNS--QNELARLPYRMQWEDDLRAYLCALDTEKPVVY 141
Query: 138 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 197
CGDLNV+H EID+ +P K++ GF+ ER++ +L G +D
Sbjct: 142 CGDLNVAHREIDLKNP---------------KQNIHSAGFSYEERQKMTDLLMSG-FVDT 185
Query: 198 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 257
+R L+ + + WS + RIDYFIVSE L+++I G + Y
Sbjct: 186 FRALYPDAAGRYTW-WSYFRRARETNAGWRIDYFIVSERLREKI------GDALIYSDVY 238
Query: 258 GSDHCPVSLEL 268
GSDHCPV L L
Sbjct: 239 GSDHCPVGLVL 249
>gi|160933576|ref|ZP_02080964.1| hypothetical protein CLOLEP_02430 [Clostridium leptum DSM 753]
gi|156867453|gb|EDO60825.1| exodeoxyribonuclease III [Clostridium leptum DSM 753]
Length = 261
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 135/270 (50%), Gaps = 34/270 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ A +K P+ Q++ D +E KL + + P ++ Y W S Y+GTA+
Sbjct: 22 LRACLTKGFPEFFQQIDADIFCLQETKLQQGQVEMVLPGYRQY--WNSAVKKGYSGTAVF 79
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
KK +P VS+ L +++ +GRVI EF FYL Y PN+ +E R +W
Sbjct: 80 SKK--EPLSVSYGL--GIEEHDQEGRVITLEFPAFYLTTVYTPNS--QEGLKRLSYRMEW 133
Query: 120 DKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ ++++ S KP++ CGD+NV+H+EID+ +P K + GFT
Sbjct: 134 EDAFRDYLKGLDSKKPVVVCGDMNVAHQEIDLKNP---------------KTNRKNAGFT 178
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER+RF +L G ID+YR L+ EK +S+ N G RIDYF+VS+ +
Sbjct: 179 DEERERFSQLLAAG-FIDSYRSLYPEKIEYSWWSYRFNARKNNAG--WRIDYFLVSDRIG 235
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RI ++ + GSDHCPV L+L
Sbjct: 236 GRIQDAKIHTQVM------GSDHCPVELDL 259
>gi|6980832|pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna
gi|6980833|pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound To Abasic Dna
Length = 279
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L
Sbjct: 73 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVL 128
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 129 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 186
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 187 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 230
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 231 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 278
>gi|373493819|ref|ZP_09584429.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
gi|371969524|gb|EHO86969.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
Length = 249
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 122/232 (52%), Gaps = 39/232 (16%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y ++S A+ K Y+GTA+ K +P V+++ E ++ +GR +L E++ FYLLN Y
Sbjct: 50 YHQYFSYAEKKGYSGTAIFTKH--EPLSVTYNFEG----HDDEGRAVLLEYDKFYLLNVY 103
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAA 159
PN + E + R +W+ ++ + + + K ++ CGDLNV+HEEID+ +P
Sbjct: 104 VPNA--QPELKRLEYRMQWEDDLRAMLSELAKKKHVVMCGDLNVAHEEIDLKNP------ 155
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW---SGN 216
K + G PGF+ ER + +L G D +R L+ E+ + +SW GN
Sbjct: 156 ---------KTNRGNPGFSDEERAKMTELLGAG-FTDTFRHLYPEQ--EGAYSWWSYRGN 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
G RIDYF+V E LKD+I + + GSDHCPVSLEL
Sbjct: 204 ARKNNTG--WRIDYFVVDEGLKDKIKEAAIHPDVM------GSDHCPVSLEL 247
>gi|348577629|ref|XP_003474586.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cavia
porcellus]
Length = 318
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 128/231 (55%), Gaps = 30/231 (12%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L+
Sbjct: 115 SHQYWSAPSDKEGYSGVGLLSRQC--PIKVSYGIGEE--EHDQEGRVIVAEFDSFVLVTA 170
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 171 YVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG--- 225
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ---------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNAAYAYTF-WTYMMN 272
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 273 ARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|6980804|pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980805|pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980812|pdb|1DE9|A Chain A, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
gi|6980813|pdb|1DE9|B Chain B, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
Length = 276
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L
Sbjct: 70 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVL 125
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 126 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK- 182
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 183 -----------GNKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 227
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 228 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 275
>gi|194699264|gb|ACF83716.1| unknown [Zea mays]
gi|413917520|gb|AFW57452.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 166
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 67/76 (88%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLV 60
MPAAGSK APKN ELKDDT SR+EK +++RALS+ PFK+Y++WWSL+DSKYAGTA+ +
Sbjct: 91 MPAAGSKGAPKNPSELKDDTSLSRDEKQVVLRALSASPFKDYRVWWSLSDSKYAGTAMFI 150
Query: 61 KKCFQPKKVSFSLEKT 76
KK F+PKKVSF+L++T
Sbjct: 151 KKKFEPKKVSFNLDRT 166
>gi|225548156|ref|ZP_03769441.1| hypothetical protein RUMHYD_00135 [Blautia hydrogenotrophica DSM
10507]
gi|225040687|gb|EEG50933.1| exodeoxyribonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 251
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 123/237 (51%), Gaps = 32/237 (13%)
Query: 34 LSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFET 93
L+ P + Y W S Y+GTA+ K+ +P VS+ + +++ +GRVI E+E
Sbjct: 45 LTLPGYHQY--WNSAVRKGYSGTAIFAKR--EPLSVSYGI--GIEEHDQEGRVITLEYED 98
Query: 94 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSH 152
FY + Y PN+ + E R W++ E++ + KP++WCGDLNV+H+EID+ +
Sbjct: 99 FYFVTVYTPNS--QNELARLSYRMDWERDFLEYLTKLEERKPVVWCGDLNVAHQEIDLKN 156
Query: 153 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 212
P K + GFT ER F +L+ G ID +R+ + +++ +
Sbjct: 157 P---------------KTNRKNAGFTDEERACFTKVLESG-FIDTFRYFYPDQEGIYSW- 199
Query: 213 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
WS + + RIDYF+VS L+++++ ++ + GSDHCPV L+++
Sbjct: 200 WSYRFRAREKNAGWRIDYFLVSSSLREKMVDAKIHTQVL------GSDHCPVELDIT 250
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A K Y+GTA+ K P V + + + +GR+I E+E FYL+N Y
Sbjct: 50 YEQYWNYAQKKGYSGTAIFTKHT--PLSVKYGVGDE--DSQDEGRIITLEYEDFYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN + + R W++ + ++ S KP+++CGDLNV+H EID+ +
Sbjct: 106 TPNA--QRDLARLPLRLTWEEHLASYLQDLNSKKPVVYCGDLNVAHTEIDLKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G GFT ER +F +L G +D++R+ H + D WS
Sbjct: 158 ---------KSNIGNSGFTYEERAKFSELLASG-FVDSFRYKHP-NETDHFTWWSYMNKV 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYFIVSE+LK++I + H GSDHCP+ L+L
Sbjct: 207 RERNIGWRIDYFIVSEQLKNQINQATIHPH------IMGSDHCPIELQL 249
>gi|296214367|ref|XP_002753758.1| PREDICTED: uncharacterized protein LOC100400557 isoform 1
[Callithrix jacchus]
gi|296214369|ref|XP_002753759.1| PREDICTED: uncharacterized protein LOC100400557 isoform 2
[Callithrix jacchus]
Length = 318
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P +Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L
Sbjct: 112 PGLPHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|170582912|ref|XP_001896345.1| exodeoxyribonuclease III family protein [Brugia malayi]
gi|158596475|gb|EDP34813.1| exodeoxyribonuclease III family protein [Brugia malayi]
Length = 314
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 30/222 (13%)
Query: 51 SKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 107
S + G LL K+ +P KV++S + K + GR+I+AE+E++YL+N Y PN+G
Sbjct: 117 SGHGGVLLLTKE--EPIKVTYSFDDKSKCDIDGNGKGRIIIAEYESYYLINAYVPNSG-- 172
Query: 108 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 166
+ +R+ WD F+ + KP+++ GDLNV+H+EID+++P+
Sbjct: 173 RGLVNLDKRKIWDDYYLTFIKKLDLSKPVVYVGDLNVAHQEIDLANPK----------TN 222
Query: 167 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 226
NK GFT ER F +L G +D +R L+ +K+ F WS + +
Sbjct: 223 RNK----TAGFTDQERNDFTRLLDAG-FVDVFRRLNPDKEGAYTF-WSNMHNAREKNVGW 276
Query: 227 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R+DYF+VSE + +++ C++ L GSDHCP+SL +
Sbjct: 277 RLDYFVVSERIMNKVKKCDI------LHSIKGSDHCPLSLTI 312
>gi|289450732|ref|YP_003475042.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289185279|gb|ADC91704.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 251
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 134/271 (49%), Gaps = 35/271 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSK-YAGTAL 58
+ A K ++ Q L D +E KL + L P + Y W+ A K Y+GTA+
Sbjct: 12 LRACVEKGFVESMQHLSADIICIQESKLQAGQIDLDLPGYCQY---WNYARKKGYSGTAI 68
Query: 59 LVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 118
K +P +V++ + ++ +GR+I AEF +YL Y PN+ ++ R+
Sbjct: 69 FSK--IEPLRVTYGMNMP--DHDQEGRLITAEFPDYYLCTVYTPNS--QDGLKRLVYRQS 122
Query: 119 WDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGF 177
W++ ++ + KP+I CGDLNV+H EID+ +P AA + N PGF
Sbjct: 123 WERDFLTYLQELRRVKPVIICGDLNVAHREIDLKNP---AANRKN------------PGF 167
Query: 178 TIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 237
T ER F +L G +D +R+ + EK + + WS + R RIDYF+VS EL
Sbjct: 168 TDEERAEFQTLLDAG-FVDTFRYFYPEKPEEYSW-WSYRFNARSRNAGWRIDYFLVSNEL 225
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
DR +Q I E F GSDHCPV L L
Sbjct: 226 TDR-----LQSASIHQEIF-GSDHCPVELIL 250
>gi|403289383|ref|XP_003935839.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
gi|403289385|ref|XP_003935840.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
Length = 318
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P +Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L
Sbjct: 112 PGLPHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|296090736|ref|NP_001171688.1| DNA-(apurinic or apyrimidinic site) lyase [Gallus gallus]
gi|194722849|dbj|BAG66138.1| APEX nuclease [Gallus gallus]
Length = 300
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 31/238 (13%)
Query: 34 LSSPPFKNYQIWWS-LADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
LS P ++ W S + S Y+G LL + P +V+ + +++ +GRV+ AEF
Sbjct: 91 LSQLPHLPHKFWGSAVGRSGYSGVGLLSRTA--PIRVTHGIGIE--EHDAEGRVLTAEFP 146
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVS 151
+ Y+++ Y PN+G N Q R++WD + F+ + KP++ CGDLNV+H EID+
Sbjct: 147 SVYVVSAYVPNSG--RGLNRLQYRQRWDGAFKSFLQRLDAQKPVVLCGDLNVAHREIDLR 204
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + PGFT ER FGA+L +G +D++R L+ + F
Sbjct: 205 NP---------------KSNRRSPGFTQEERDAFGALL-DGGFLDSFRLLYPDVPNAYTF 248
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + R R+DYF++S L++ + +++ + GSDHCP++L L+
Sbjct: 249 -WTYMGGARERNVGWRLDYFLLSTRLREALCDSKIRSAAM------GSDHCPITLYLA 299
>gi|402584375|gb|EJW78317.1| exodeoxyribonuclease III [Wuchereria bancrofti]
Length = 314
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 30/222 (13%)
Query: 51 SKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 107
S + G LL K+ +P KV+++ + K + GR+I+AE+E++YL+N Y PN+G
Sbjct: 117 SGHGGVLLLTKE--EPIKVAYTFDDKSKCVVDGNGKGRIIIAEYESYYLINAYVPNSG-- 172
Query: 108 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 166
+ +R+ WD F+ + KP+++ GDLNV+H+EID+++P+
Sbjct: 173 RGLVNLDKRKIWDDYYLTFIKKLDLSKPVVYVGDLNVAHQEIDLANPK----------TN 222
Query: 167 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 226
NK GFT ER F +L G +D +R L+ +K+ F WS + +
Sbjct: 223 RNK----TAGFTDQERNDFTRLLDAG-FVDVFRRLNPDKEGAYTF-WSNMHNAREKNVGW 276
Query: 227 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R+DYF+VSE + +++ C++ L GSDHCP+SL +
Sbjct: 277 RLDYFVVSERIMNKVKKCDI------LHSIKGSDHCPLSLTI 312
>gi|328782712|ref|XP_623551.2| PREDICTED: recombination repair protein 1 [Apis mellifera]
Length = 346
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 114/220 (51%), Gaps = 30/220 (13%)
Query: 51 SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEE 110
S Y G AL K+ +P V + L + +++ +GR+I AE+ FYL+N Y PN G K
Sbjct: 155 SGYCGVALFTKE--KPIDVKYGLNNS--EFDNEGRLITAEYLNFYLINVYVPNAGQKLV- 209
Query: 111 NSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK 169
+ +R KW++ + +V KP+I CGD+NV+H+EID+ +P K
Sbjct: 210 -TLPKRLKWNEIFKTYVRNLDEKKPVIICGDMNVAHKEIDLRNP---------------K 253
Query: 170 EDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRID 229
+ GFTI ER L G +D +R L+ +K D WS + + R+D
Sbjct: 254 TNIKNAGFTIEERDGMTDFLATG-FVDTFRALYPDK-TDAYTFWSYFANARSKNIGWRLD 311
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
YF+VSE +KD + C+ + + YGSDHCP+ L ++
Sbjct: 312 YFLVSERIKDNV--CD----NVIRDKVYGSDHCPIVLYIN 345
>gi|220930682|ref|YP_002507591.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
gi|220001010|gb|ACL77611.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
Length = 253
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 131/257 (50%), Gaps = 31/257 (12%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
+E+ D +E KL + + Y+ +W+ A K Y+GTA+ K K VS S
Sbjct: 25 KEVDSDIFCIQETKLQEGQVELEQELEGYEQYWNYAVKKGYSGTAIFTK----IKPVSSS 80
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 131
+++ +GRVI EF+ ++L+N Y PN+ K E + R KW+ + ++ Q
Sbjct: 81 CGIGIEEHDNEGRVITLEFDQYFLVNVYTPNS--KRELERLEYRMKWEDDFRIYLKQLEE 138
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP+I CGD+NV+H+EID+ +P NK GFT+ ER++F +L++
Sbjct: 139 TKPVIICGDMNVAHKEIDIKNPR------------SNKR---SAGFTMEEREKFSELLEQ 183
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 251
G +D+YR L+ +K + WS + R RIDYF VSE LK+ I ++
Sbjct: 184 G-FVDSYRTLYPDKTGAYTW-WSYMFKARERNVGWRIDYFCVSEVLKNIIEEADIYSE-- 239
Query: 252 ELEGFYGSDHCPVSLEL 268
GSDHCPV L +
Sbjct: 240 ----IMGSDHCPVGLTI 252
>gi|351701700|gb|EHB04619.1| DNA-(apurinic or apyrimidinic site) lyase [Heterocephalus glaber]
Length = 318
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 128/231 (55%), Gaps = 30/231 (12%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
++Q W + +D + Y+G LL ++C P KV++ + + +++ +GRVI+AEF++F L+
Sbjct: 115 SHQYWSAPSDKEGYSGVGLLSRQC--PLKVTYGIGEE--EHDQEGRVIVAEFDSFVLVTA 170
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 171 YVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG--- 225
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ---------NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNAAYAYTF-WTYMMN 272
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 273 ARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|146286032|sp|A1YES6.1|APEX1_GORGO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|120974134|gb|ABM46644.1| APEX1 [Gorilla gorilla]
Length = 318
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 127/235 (54%), Gaps = 32/235 (13%)
Query: 38 PFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFY 95
P +YQ +WS K Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F
Sbjct: 112 PGLSYQ-YWSAPXXKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFV 166
Query: 96 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPE 154
L+ Y PN G + R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 167 LVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPK 224
Query: 155 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWS 214
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 225 G------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WT 268
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 269 YMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|153853826|ref|ZP_01995182.1| hypothetical protein DORLON_01173 [Dorea longicatena DSM 13814]
gi|149753576|gb|EDM63507.1| exodeoxyribonuclease III [Dorea longicatena DSM 13814]
Length = 250
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 122/238 (51%), Gaps = 36/238 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L +P + Y W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE
Sbjct: 45 LDTPGYHQY---WNYAERKGYSGTAIFTKE--EPLSVSYGL--GIEEHDKEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
FY + Y PN+ + E R +W+ ++ + KP+I+CGDLNV+H+EID+
Sbjct: 98 DFYFITVYTPNS--QSELARLDYRMRWEDAFLAYLKKLEEKKPVIFCGDLNVAHKEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GFT ER +F +L G ID +R+ + D + +
Sbjct: 156 NP---------------KTNRKNAGFTDEERGKFTNLLNAG-FIDTFRYFY--PDAEGIY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
S WS + + RIDYF VSE LKDRI ++ L GSDHCPV L+
Sbjct: 198 SWWSYRFSARKKNAGWRIDYFCVSESLKDRIKDAKI------LTEIMGSDHCPVELDF 249
>gi|402836561|ref|ZP_10885097.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
gi|402271037|gb|EJU20293.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
Length = 249
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 120/230 (52%), Gaps = 34/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y ++S AD K Y+GTA+ K+ P +V++ +E K+ +GRVI E++ FYL+ Y
Sbjct: 50 YHEYYSYADKKGYSGTAIFAKEA--PLRVAYGIEG---KHNDEGRVITLEYDDFYLICAY 104
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ ++E R +++ ++ ++ + KP+++CGDLNV+HEEID+ +P
Sbjct: 105 VPNS--QDELKRIDYRMEYEDDLRAYMSKLDKVKPVVYCGDLNVAHEEIDLKNP------ 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + G GF+ ER + +L G D YR LH D +S WS
Sbjct: 157 ---------KSNRGNAGFSDEERSKMTELLGAG-FTDTYRHLH--PDTPGVYSWWSYRFN 204
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFIVS L+ +I + L YGSDHCPVSL L
Sbjct: 205 ARANNAGWRIDYFIVSNRLETKIKEAAI------LTDVYGSDHCPVSLVL 248
>gi|317503938|ref|ZP_07961946.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
gi|315664964|gb|EFV04623.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
Length = 250
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 134/271 (49%), Gaps = 36/271 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A KD ++ + L D +E K+ F Y +W+ A+ K Y+GTA+
Sbjct: 11 LRACVGKDFSQSFESLNADFFCLQETKM--QAGQLELQFPGYTSYWNYAEKKGYSGTAIY 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+K +P VS+ + +++ +GRVI E++ F+L+ Y PN +EE R W
Sbjct: 69 TRK--EPLAVSYGIGID--EHDHEGRVITLEYDKFFLVTVYTPNA--QEELRRLDYRMTW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ Q ++ Q K P+I CGD+NV+H+EID+ +P K + GFT
Sbjct: 123 EDAFQAYLHQLDAKKPVIVCGDMNVAHQEIDLKNP---------------KTNRRSAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER + +L G D +R LH E+ +S WS + + RIDYF++S+ L
Sbjct: 168 DEERSKMTQLLSNG-FTDTFRTLHPEQ---ITYSYWSYRFRAREKNAGWRIDYFLISDRL 223
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ +++G I E YGSDHCPV L++
Sbjct: 224 RP-----QLKGASIHTE-IYGSDHCPVELDI 248
>gi|301788284|ref|XP_002929556.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Ailuropoda melanoleuca]
gi|301788286|ref|XP_002929557.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Ailuropoda melanoleuca]
gi|301788288|ref|XP_002929558.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 3
[Ailuropoda melanoleuca]
gi|281345899|gb|EFB21483.1| hypothetical protein PANDA_019762 [Ailuropoda melanoleuca]
Length = 318
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 127/231 (54%), Gaps = 30/231 (12%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+ F L+
Sbjct: 115 SHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDAFVLVTA 170
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 171 YVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK---- 224
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 225 --------GNKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMN 272
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 273 ARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|297824099|ref|XP_002879932.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325771|gb|EFH56191.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
Length = 550
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 31/228 (13%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+WS + SK Y+GTA++ + +P V + + ++ +GR++ AEF++FYL+NTY P
Sbjct: 348 FWSCSVSKLGYSGTAIISR--IKPLSVRYGTGLSGSDHDMEGRIVTAEFDSFYLINTYVP 405
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N+G + S+ R +WD+ + + + KP++ GDLN +HEEID+ +P A K
Sbjct: 406 NSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNP---AGNKR 461
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 221
N GFTI ER+ FGA + +D +R K+ G+++ G G
Sbjct: 462 NA------------GFTIEERQSFGANFLDKGFVDTFR---KQHPGVVGYTYWGYRHGGR 506
Query: 222 RGKRM-RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R R+DYF+VSE IA + I L GSDHCP+ L L
Sbjct: 507 KTNRGWRLDYFLVSES-----IAANVHDSYI-LPDINGSDHCPIGLIL 548
>gi|299143331|ref|ZP_07036411.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517816|gb|EFI41555.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 250
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+++++ A K Y+GTA+ + +P VS+ + +++ +GRVI AEFE FY + Y
Sbjct: 50 YKMYYNYAQRKGYSGTAIFTR--IEPISVSYGIGME--EHDTEGRVITAEFEKFYFVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K + R W+ + ++ + KP++ CGDLNV+HEEID+++P
Sbjct: 106 TPNS--KRGLERLEYRMVWEDVFRNYLNKLRETKPVVLCGDLNVAHEEIDLANP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
N ++ GFT ER +F +LK G ID +R+ + ++ + + WS
Sbjct: 158 ------ATNHKN---AGFTNEERSKFTELLKSG-YIDTFRYFYPDRKDEYSW-WSNFAKS 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VSEELK + ++ + GSDHCPV L L
Sbjct: 207 RERNIGWRIDYFVVSEELKGNLSDAKIH------QSVMGSDHCPVELVL 249
>gi|340347509|ref|ZP_08670617.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433653537|ref|YP_007297391.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|339609205|gb|EGQ14080.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433304070|gb|AGB29885.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
Length = 266
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 36/237 (15%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F YQ +W+ A+ K Y+GTA+ + +P V++ + K +++ +GRVI E+ FYL+
Sbjct: 58 FDGYQSYWNYAEKKGYSGTAVFTRH--EPLGVTYGIGKE--EHDHEGRVITLEYPDFYLI 113
Query: 98 NTYAPNNG----WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSH 152
Y PN+ + + R W+ +E++++ KP+I CGDLNV+HEE+D+ +
Sbjct: 114 TCYTPNSQDTIKGELKPRRLGYRMTWEDDFREYMMRLDKNKPVIMCGDLNVAHEEMDLKN 173
Query: 153 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 212
P K + GFT ER++ +L G +D++R L+ E+ +S
Sbjct: 174 P---------------KTNHNNAGFTDEEREKMTTLLGSG-FLDSFRMLYPEQ---VTYS 214
Query: 213 -WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
WS + + RIDYFI S+ L+DRI ++ GSDHCPV L+L
Sbjct: 215 WWSYRMRAREKNTGWRIDYFITSDRLRDRIADAKIHTE------IMGSDHCPVELDL 265
>gi|154497021|ref|ZP_02035717.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC
29799]
gi|150273420|gb|EDN00548.1| hypothetical protein BACCAP_01314 [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 250
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 34/237 (14%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +K Y W+ A+ K Y+GTA+ + +P V++ + +++ +GR I EFE
Sbjct: 45 LDLPGYKQY---WNSAEKKGYSGTAVFTR--LEPLNVTYGIGSE--EHDREGRAITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVS 151
FYL+N Y PN + E R +W+ ++ ++L+ S KP+I+CGDLNV+H+EID+
Sbjct: 98 DFYLVNCYVPNA--QRELTRLDWRMEWEDALRAYLLELDSRKPVIYCGDLNVAHQEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+ K + G GFT ER + +L+ G +D++R L+ +K +
Sbjct: 156 NA---------------KSNRGNAGFTDEERAKMTQLLEAG-FVDSFRHLYPDKTGAYSW 199
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
WS + + RIDYF+VS+ + D+I G I GSDHCPV L++
Sbjct: 200 -WSYMFHAREKNAGWRIDYFLVSKSIADKI------GDSIIHPEIMGSDHCPVELDI 249
>gi|373465510|ref|ZP_09556970.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
gi|371760225|gb|EHO48917.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
Length = 256
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 129/270 (47%), Gaps = 37/270 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMR-ALSSPPFKNYQIWWSLADSK-YAGTAL 58
+ A KD K +L D +E K+ + AL+ P + Y ++ A+ K Y+GTA+
Sbjct: 15 LRAVVKKDFDKTFNDLDADFFCIQETKMQAGQLALTLPGYHQY---FNYAERKGYSGTAI 71
Query: 59 LVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 118
K P V + ++ +E GR I E+ TFYL+ +Y PN+G K + F R
Sbjct: 72 FTKHA--PLNVYYGIQSDEFDHE--GRAITLEYPTFYLVTSYVPNSGAKLKRLDF--RMG 125
Query: 119 WDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGF 177
WD Q+++ + KP+I CGDLNV+H+ ID+ +P+ + GF
Sbjct: 126 WDVAFQQYLANLNKEKPVILCGDLNVAHKTIDLKNPQ---------------TNHHNAGF 170
Query: 178 TIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEE 236
T ER F L +G +D +R H DM +S WS + R RIDYF+ S
Sbjct: 171 TDEERNSFSHFLDQG-FMDTFR--HFYPDMTDIYSWWSYRFHARDRNAGWRIDYFVASNR 227
Query: 237 LKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
L D I ++ L +GSDHCPV L
Sbjct: 228 LADHISDSKI------LTDVFGSDHCPVEL 251
>gi|303234331|ref|ZP_07320970.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
gi|302494447|gb|EFL54214.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
Length = 253
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 118/225 (52%), Gaps = 30/225 (13%)
Query: 46 WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 105
+S + Y+GT + K +P VSF + +++ +GRVI E+E F+L+N Y PN+
Sbjct: 57 YSANKAGYSGTLVYTK--VEPIGVSFGIGID--EHDTEGRVITCEYEDFFLVNVYTPNSK 112
Query: 106 WKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 164
K E + R W+ ++ + KP+I CGDLNV+H EID+ +P+
Sbjct: 113 QKLERLDY--RMVWEDEFHNYLNILRDRKPVIVCGDLNVAHNEIDLKNPQ---------- 160
Query: 165 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 224
N+ GFT ER + +L +G ID +R+ + +K + + WS + R
Sbjct: 161 --SNRR---SAGFTDEERNKMSLLLNDG-YIDTFRYFYPDKTDEYSY-WSYFAKARERNA 213
Query: 225 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
RIDYFIVS++LKD ++ ++ + GSDHCPV LE++
Sbjct: 214 GWRIDYFIVSDDLKDNLVDAKIH------QSIMGSDHCPVELEIN 252
>gi|113983|sp|P23196.2|APEX1_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|118|emb|CAA40014.1| BAP 1 [Bos taurus]
Length = 318
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 138/253 (54%), Gaps = 33/253 (13%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 77
+TK S + + ++ LS ++Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCSENKLPVELQELSG---LSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 149
Query: 78 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 136
+++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLV 206
Query: 137 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 196
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D
Sbjct: 207 LCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTD 251
Query: 197 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 256
++R L+ F W+ + + R+DYF++S+ + + +++ +
Sbjct: 252 SFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSVLPALCDSKIRSKAL----- 305
Query: 257 YGSDHCPVSLELS 269
GSDHCP++L L+
Sbjct: 306 -GSDHCPITLYLA 317
>gi|385811883|ref|YP_005848274.1| exodeoxyribonuclease [Lactobacillus fermentum CECT 5716]
gi|299782782|gb|ADJ40780.1| Exodeoxyribonuclease [Lactobacillus fermentum CECT 5716]
Length = 279
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 116/243 (47%), Gaps = 34/243 (13%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F Y + W A YAGT L K+ PK V++ + +GR+I EFE F
Sbjct: 64 FAGYTVVWRSSVEPARKGYAGTMYLYKESLTPK-VTYPTIGAPEPMDKEGRIITLEFENF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
YL Y PN+G + R++WD R +E++ + KP+I GD NV+HEEID++HP
Sbjct: 123 YLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTELDRQKPVIASGDFNVAHEEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
+ GFT ER++F A+L G D++R LH D +SW
Sbjct: 181 ---------------ANNHHSAGFTDEEREKFTALLAAG-FTDSFRSLH--PDETGAYSW 222
Query: 214 SGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
K RIDY++VS+ L D++++ M G DH P+ L+++
Sbjct: 223 WAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMIDSGER------RDHAPIQLDINIP 276
Query: 272 SSD 274
++D
Sbjct: 277 AAD 279
>gi|184154634|ref|YP_001842974.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227513882|ref|ZP_03943931.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|183225978|dbj|BAG26494.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227087743|gb|EEI23055.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
Length = 279
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 116/243 (47%), Gaps = 34/243 (13%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F Y + W A YAGT L K+ PK V++ + +GR+I EFE F
Sbjct: 64 FAGYTVVWRSSVEPARKGYAGTMYLYKESLTPK-VTYPTIGAPEPMDEEGRIITLEFENF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
YL Y PN+G + R++WD R +E++ + KP+I GD NV+HEEID++HP
Sbjct: 123 YLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTELDRQKPVIASGDFNVAHEEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
+ GFT ER++F A+L G D++R LH D +SW
Sbjct: 181 ---------------ANNHHSAGFTDEEREKFTALLAAG-FTDSFRSLH--PDETGAYSW 222
Query: 214 SGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
K RIDY++VS+ L D++++ M G DH P+ L+++
Sbjct: 223 WAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMIDSGER------RDHAPIQLDINIP 276
Query: 272 SSD 274
++D
Sbjct: 277 AAD 279
>gi|339443513|ref|YP_004709518.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
gi|338902914|dbj|BAK48416.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
Length = 289
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 124/233 (53%), Gaps = 31/233 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A+ K Y+GTA+ K+ +P VS+ L A ++ +GRVI E+ETFY +
Sbjct: 86 LEGYFQYWNYAEKKGYSGTAVFTKE--EPLSVSYGLGIEA--HDQEGRVITLEYETFYFV 141
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ + E R +W+ + ++ KP+I CGD+NV+H+EID+ +P
Sbjct: 142 TVYTPNS--QSELKRLDYRMEWEDDFRAYLTGLDREKPVIVCGDMNVAHQEIDLKNP--- 196
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER++F +L G ID +R+ + +++ + WS
Sbjct: 197 ------------KTNRKNAGFTDEERQKFTELLDSG-WIDTWRYFYPDQEGVYSW-WSYR 242
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYF+VS+ LKDR+ ++ + GSDHCPV L+L+
Sbjct: 243 FKAREKNAGWRIDYFLVSDRLKDRLTDAKIHTEVM------GSDHCPVELDLN 289
>gi|398309083|ref|ZP_10512557.1| exodeoxyribonuclease III [Bacillus mojavensis RO-H-1]
Length = 252
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y ++W+ A+ K Y+GTA+ K+ +P V + + +++ +GRVI EFE Y++ Y
Sbjct: 51 YHVYWNYAEKKGYSGTAVFSKQ--KPLNVMYGIGIE--EHDQEGRVITLEFENMYVMTVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K R +W++ + F+L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 107 TPNA--KRGLERIDYRLQWEEALLAFILELDKKKPVILCGDLNVAHQEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER F L+ G ID++R+L+ D++ +SW G
Sbjct: 159 ---------KANRNNAGFSDQERGAFTRFLEAG-FIDSFRYLY--PDLEGAYSWWSYRAG 206
Query: 220 -KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R R+DYF+VSE LK +I ++ + GSDHCPV L ++
Sbjct: 207 ARDRNIGWRLDYFVVSERLKGQIEDAKISAQVL------GSDHCPVELTIN 251
>gi|210617713|ref|ZP_03291707.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
gi|210149155|gb|EEA80164.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
Length = 250
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 122/236 (51%), Gaps = 39/236 (16%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A+ K Y+GTA+ KK +P V + + +++ +GRVI EFE FY +
Sbjct: 47 LEGYHQYWNYAEKKGYSGTAVFTKK--EPLSVQYGI--GIEEHDKEGRVITLEFEEFYFV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPLIWCGDLNVSHEEIDVSHP 153
Y PN+ + E R +W+ +F+ G KP+I+ GDLNV++ EID+ +P
Sbjct: 103 TVYTPNS--QSELARLSYRIQWET---DFLAYLKGLEQKKPVIFAGDLNVAYAEIDLKNP 157
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS- 212
K + GFT ER +FG +LK G ID +R+ + E M+ +S
Sbjct: 158 ---------------KTNRKNAGFTDEERAKFGEVLKAG-FIDTFRYFYPE--MEGIYSW 199
Query: 213 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
WS + + RIDYF VSE LKDR+ ++ L GSDHCP+ L+L
Sbjct: 200 WSYRFSARAKNAGWRIDYFCVSESLKDRLADAKI------LTDVMGSDHCPIELDL 249
>gi|223935760|ref|ZP_03627676.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
gi|223895768|gb|EEF62213.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
Length = 250
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 36/233 (15%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
+ +W+ A K Y+GTA+ K K +S SL +++ +GRV+ +E+ F+L+N
Sbjct: 50 TFTTYWNTAQKKGYSGTAIFTKA----KPISVSLGINCPEHDMEGRVLTSEYPEFFLVNV 105
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN+ K E R++WD ++ + KP+I+CGDLNV+H EID+++P
Sbjct: 106 YVPNS--KRELTRLAYRQQWDCDFLSYLKKLEKKKPVIFCGDLNVAHTEIDLANP----- 158
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
K + GFT ER F ++K G ID +R K +SW +P+
Sbjct: 159 ----------KANVKNHGFTPEERAGFSTVIKAG-FIDTFREFEKGGGH---YSW-WSPM 203
Query: 219 GKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
G R + + RIDYF++S L+ R+ +Q + GSDHCPV +ELS
Sbjct: 204 GGARSRNVGWRIDYFLISSALRPRLKRAFIQPN------IPGSDHCPVGIELS 250
>gi|419718967|ref|ZP_14246261.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
gi|383304836|gb|EIC96227.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
Length = 252
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 123/231 (53%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+G A+ K +P V++ + +++ +GRVI AE++ FYL+ Y
Sbjct: 51 YYDYWNYATKKGYSGVAVFTKD--KPINVTYGIGID--EHDNEGRVITAEYDEFYLITCY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + R W+ ++VL+ KP+I+CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--QRGLTRLDYRMTWEDAFLDYVLKLEEKKPVIFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER + IL G +D++R L+ +K +SW + +G
Sbjct: 159 ---------KTNRKNAGFTDEERAKMDIILSSG-FVDSFRVLYPDK--TDAYSW-WSYMG 205
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + RIDYFIVS +LKDRI ++ + GSDHCPV L++
Sbjct: 206 GARAKNVGWRIDYFIVSAKLKDRIKEAKIHSEVL------GSDHCPVELDI 250
>gi|427440664|ref|ZP_18924936.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
gi|425787371|dbj|GAC45724.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
Length = 256
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI E+E F+L+ Y
Sbjct: 55 YHQYWNYAEKKGYSGTAIFTKR--EPVAVSYGL--GIPEFDQEGRVITLEYEEFFLVTCY 110
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R WD + +V Q + KP+I+CGDLNV+HEEID+ +
Sbjct: 111 TPNS--QPELRRLDYRMNWDDAFRAYVKQLADTKPVIFCGDLNVAHEEIDLKN------- 161
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
++ + GFT ER++F +L+ G D YR+ + +K+ + WS
Sbjct: 162 --------DRTNHHNAGFTDEERQKFTELLQSG-FTDTYRYFYPDKEGVYSW-WSYRFNA 211
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF+ S+ L ++ ++ +GSDHCP+ L+L+
Sbjct: 212 RANNAGWRIDYFVTSQALDKQLADAKIHTE------IFGSDHCPIELDLN 255
>gi|336114106|ref|YP_004568873.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
gi|335367536|gb|AEH53487.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
Length = 251
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 126/229 (55%), Gaps = 35/229 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P V + + + + EP+GR++ E+E FYL+N Y
Sbjct: 50 YYQYWNYAERKGYSGTAVFTKK--EPLSVRYGVGEN--RTEPEGRILTLEYEDFYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + + R +W+ R++ ++ KP+I CGD+NV+H+EID+ +
Sbjct: 106 TPNS--QRDLARLGYRLEWENRMRAYLTDLDKKKPVIVCGDMNVAHQEIDLKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G GFT ER + +L G ID++R+ + E+ + ++W + +
Sbjct: 158 ---------KSNIGNSGFTAEERDKMTGLLNSG-FIDSFRYFYPER--EGAYTWW-SYMN 204
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
K R + + RIDYF+VS+ L R ++G G+ E GSDHCPV L
Sbjct: 205 KVRERNIGWRIDYFLVSKRLAGR-----LKGAGMYPE-IMGSDHCPVFL 247
>gi|205373614|ref|ZP_03226417.1| exodeoxyribonuclease [Bacillus coahuilensis m4-4]
Length = 195
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 31/219 (14%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GTA+ K +P KV++ +++ + +GR+I EF FY++ Y PN+ K + +
Sbjct: 7 YSGTAIFTKS--KPLKVTYGMDE---ERNSEGRMITLEFSDFYVVTMYTPNS--KRDLSR 59
Query: 113 FQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+ R +W+ +Q ++ + + K P+I+CGDLNV+H E+DV + ++ +
Sbjct: 60 LEERLEWEDLVQGYLDKLNQKKPVIFCGDLNVAHTELDVKN---------------DRAN 104
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
G GFT ER++ +L G D YR+ + +D D WS + R RIDYF
Sbjct: 105 QGNSGFTQVEREKMNGLLDLG-FTDTYRYFNPARD-DQFTWWSYMKGVRERNIGWRIDYF 162
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
IVS + I ++ H YGSDHCP+ LELS+
Sbjct: 163 IVSTSFMNTISNSDIHDH------VYGSDHCPIVLELSK 195
>gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|340754328|ref|ZP_08691085.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER +F +L+ G ID +R+ + D++ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLESG-FIDTFRYFY--PDLEHAYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VS+ L+ ++ E+ GSDHCPV L L
Sbjct: 203 RANARKNNTGWRIDYFVVSKALEKYLVDAEIHAQT------EGSDHCPVVLFL 249
>gi|315606307|ref|ZP_07881323.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
gi|315251998|gb|EFU31971.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
Length = 249
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 120/233 (51%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y +W+ A+ K Y+GTA+ K +P V++ L +++ +GRVI E E FYL+
Sbjct: 47 FEGYDSYWNYAEKKGYSGTAIYTKH--KPLNVTYGL--GIEEHDHEGRVITLEMEDFYLI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++E R W+ +++ K P+I CGDLNV+HEEID+ +P
Sbjct: 103 TVYTPNS--QDELRRLNYRMTWEDDFLKYIQGLDAKKPVIVCGDLNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ L G D++R+ + E+ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEEREKMTITLNSG-FTDSFRYKYPEQ---VTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF++S L+DR++ ++ YGSDHCPV L+L
Sbjct: 202 RFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTE------VYGSDHCPVELDL 248
>gi|297587792|ref|ZP_06946436.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302380031|ref|ZP_07268510.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|297574481|gb|EFH93201.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302312257|gb|EFK94259.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
Length = 253
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 118/225 (52%), Gaps = 30/225 (13%)
Query: 46 WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 105
+S + Y+GT + K +P VSF + +++ +GRVI E+E F+L+N Y PN+
Sbjct: 57 YSANKAGYSGTLVYTKT--EPIGVSFGI--GIDEHDTEGRVITCEYEDFFLVNVYTPNSK 112
Query: 106 WKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 164
K E + R W+ ++ + KP+I CGDLNV+H EID+ +P+
Sbjct: 113 QKLERLDY--RMVWEDEFHNYLNILRDRKPVIVCGDLNVAHNEIDLKNPQ---------- 160
Query: 165 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 224
N+ GFT ER + +L +G ID +R+ + +K + + WS + R
Sbjct: 161 --SNRR---SAGFTDEERNKMSLLLNDG-YIDTFRYFYPDKTDEYSY-WSYFAKARERNA 213
Query: 225 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
RIDYFIVS++LKD ++ ++ + GSDHCPV LE++
Sbjct: 214 GWRIDYFIVSDDLKDNLVDAKIH------QSIMGSDHCPVELEIN 252
>gi|304385589|ref|ZP_07367933.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328093|gb|EFL95315.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 251
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI E+E F+L+ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAVFTKR--EPVAVSYGL--GIPEFDQEGRVITLEYEKFFLVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R WD + +V Q + KP+I+CGDLNV+HEEID+ +
Sbjct: 106 TPNS--QPELRRLDYRMNWDDAFRAYVKQLADTKPVIFCGDLNVAHEEIDLKN------- 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
++ + GFT ER++F +L+ G D YR+ + +K+ + WS
Sbjct: 157 --------DRTNHHNAGFTDEERQKFTELLQSG-FTDTYRYFYPDKEGVYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF+ S+ L ++ ++ +GSDHCP+ L+L+
Sbjct: 207 RANNAGWRIDYFVTSQALDKQLADAKIHTE------IFGSDHCPIELDLN 250
>gi|402308513|ref|ZP_10827517.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
gi|400374964|gb|EJP27874.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
Length = 242
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 120/233 (51%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y +W+ A+ K Y+GTA+ K +P V++ L +++ +GRVI E E FYL+
Sbjct: 40 FEGYDSYWNYAEKKGYSGTAIYTKH--KPLNVTYGL--GIEEHDHEGRVITLEMEDFYLI 95
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++E R W+ +++ K P+I CGDLNV+HEEID+ +P
Sbjct: 96 TVYTPNS--QDELRRLDYRMTWEDDFLKYIQGLDAKKPVIVCGDLNVAHEEIDLKNP--- 150
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ L G D++R+ + E+ +S WS
Sbjct: 151 ------------KTNRRNAGFTDEEREKMTITLNSG-FTDSFRYKYPEQ---VTYSWWSY 194
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF++S L+DR++ ++ YGSDHCPV L+L
Sbjct: 195 RFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTE------VYGSDHCPVELDL 241
>gi|339521855|gb|AEJ84092.1| DNA-(apurinic or apyrimidinic site) lyase [Capra hircus]
Length = 318
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 136/253 (53%), Gaps = 33/253 (13%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 77
+TK S + + ++ LS P +Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCSENKLPVELQELSGLP---HQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 149
Query: 78 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 136
+++ +GRVI+A ++ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAGYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLV 206
Query: 137 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 196
CGDLNV+HEE DV +P+ NK++ GFT ER+ FG +L+ L D
Sbjct: 207 LCGDLNVAHEESDVRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTD 251
Query: 197 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 256
++R L+ F W+ + + R+DYF++S+ L + +++ +
Sbjct: 252 SFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSLLPAVCDSKIRSKAL----- 305
Query: 257 YGSDHCPVSLELS 269
GSDHCP++L L+
Sbjct: 306 -GSDHCPITLYLA 317
>gi|302345223|ref|YP_003813576.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
gi|302150206|gb|ADK96468.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
Length = 249
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y+ +W+ AD K Y+GTA+ K +P V++ ++ +++ +GRVI E E FYL+
Sbjct: 47 FPGYESYWNYADKKGYSGTAIYTKH--KPLSVTYGIDID--EHDHEGRVITLEMEDFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++ + R KW+ Q ++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 103 TVYTPNS--QDGLRRLEYRMKWEDDFQAYLHKLDEKKPVIVCGDMNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G ID +R L+ E+ +S WS
Sbjct: 158 ------------KTNHKNAGFTDEEREKMTQLLSNG-FIDTFRTLYPEQ---VTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF++SE LKDR+ ++ + GSDHCPV + L
Sbjct: 202 RFRAREKNTGWRIDYFLISERLKDRLEDAKIHTEIM------GSDHCPVEIIL 248
>gi|270290148|ref|ZP_06196374.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|418069863|ref|ZP_12707140.1| exonuclease III [Pediococcus acidilactici MA18/5M]
gi|270281685|gb|EFA27517.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|357536394|gb|EHJ20425.1| exonuclease III [Pediococcus acidilactici MA18/5M]
Length = 251
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI E+E F+L+ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAVFTKR--EPVAVSYGL--GIPEFDQEGRVITLEYEEFFLVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R WD + +V Q + KP+I+CGDLNV+HEEID+ +
Sbjct: 106 TPNS--QPELRRLDYRMNWDDAFRAYVKQLADTKPVIFCGDLNVAHEEIDLKN------- 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
++ + GFT ER++F +L+ G D YR+ + +K+ + WS
Sbjct: 157 --------DRTNHHNAGFTDEERQKFTELLQSG-FTDTYRYFYPDKEGVYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF+ S+ L ++ ++ +GSDHCP+ L+L+
Sbjct: 207 RANNAGWRIDYFVTSQALDKQLADAKIHTE------IFGSDHCPIELDLN 250
>gi|374710435|ref|ZP_09714869.1| apurinic/apyrimidinic endonuclease [Sporolactobacillus inulinus
CASD]
Length = 253
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
+Q W Y+GTA+ K +P +V++ + ++ +GR+I E+E +YL+ Y
Sbjct: 52 HQFWNDAVRKGYSGTAIFTKN--KPLRVTYGMGIEV--HDQEGRLITLEYEDYYLVTVYT 107
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN K + R +W +++ + KP+I+CGDLNV+H+ ID+++P
Sbjct: 108 PNA--KRDLTRLAYRLEWGAAFTDYMKRLDEKKPVIFCGDLNVAHQAIDLTYP------- 158
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + G GFTI ER+ F A+L G +D++R L+ E+ D WS +
Sbjct: 159 --------KNNKGNSGFTIEEREDFTALLNNG-FVDSFRHLYPER-TDAYSWWSFLFNAR 208
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R RIDYF++S+ L I ++ L YGSDHCPV L+L
Sbjct: 209 ERNIGWRIDYFVLSKCLSSSIRDAKL------LTEIYGSDHCPVELDL 250
>gi|288927024|ref|ZP_06420917.1| exodeoxyribonuclease III [Prevotella buccae D17]
gi|288336198|gb|EFC74586.1| exodeoxyribonuclease III [Prevotella buccae D17]
Length = 249
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 120/233 (51%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y +W+ A+ K Y+GTA+ K +P V++ L +++ +GRVI E E FYL+
Sbjct: 47 FEGYDSYWNYAEKKGYSGTAIYTKH--KPLNVTYGL--GIEEHDHEGRVITLEMEDFYLI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++E R W+ +++ K P+I CGDLNV+HEEID+ +P
Sbjct: 103 TVYTPNS--QDELRRLDYRMTWEDDFLKYIQGLDAKKPVIVCGDLNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ L G D++R+ + E+ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEEREKMTITLNSG-FTDSFRYKYPEQ---VTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF++S L+DR++ ++ YGSDHCPV L+L
Sbjct: 202 RFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTE------VYGSDHCPVELDL 248
>gi|427413104|ref|ZP_18903296.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
gi|425715920|gb|EKU78906.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
Length = 251
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 138/273 (50%), Gaps = 37/273 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA +K ++ ++L D +E KL L + L P ++ Y W S Y+GTA+
Sbjct: 11 LRAAVTKGFMESFEKLDADMFCLQETKLQLHQIELELPGYEQY--WNSAVKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V + + +++ +GRVI AE++ FYL+ Y PN+ + E + R W
Sbjct: 69 TR--VKPLNVIYGI--GIEEHDQEGRVITAEYDNFYLVTCYTPNS--QRELARLEYRMTW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + ++L+ K P+I CGDLNV+H EID+ +P K + GFT
Sbjct: 123 EDAFRAYLLELDAKKPVILCGDLNVAHNEIDLKNP---------------KTNRKNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEE 236
ER++ +L G D +R L+ D+ +SW + +GK R + + RIDYFI S
Sbjct: 168 DEEREKMTELLNAG-FTDTFRKLY--PDVTDAYSW-WSYMGKARDRNVGWRIDYFITSAR 223
Query: 237 LKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
L I+ ++ +GSDHCPV LE++
Sbjct: 224 LDKDIVEAKIH------PDIFGSDHCPVELEIN 250
>gi|384891873|ref|YP_005766006.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|385224548|ref|YP_005784474.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
gi|385232401|ref|YP_005792320.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 120/233 (51%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEF 155
N Y PN+ ++ + R W+ ++F VL+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEMEFKKFLKVLELK-KPVIVCGDLNVAHNEIDLENP-- 157
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K + GF+ ERK+F +L G ID +R+ + K+ + WS
Sbjct: 158 -------------KTNRKNAGFSDEERKKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 203 MQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|256846719|ref|ZP_05552175.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717939|gb|EEU31496.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 253
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 124/238 (52%), Gaps = 43/238 (18%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+HEEID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKKPVVVCGDLNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ +SW
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW--- 199
Query: 217 PIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
YRG+ RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 200 --WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLIL 249
>gi|157127237|ref|XP_001654881.1| ap endonuclease [Aedes aegypti]
gi|108872984|gb|EAT37209.1| AAEL010781-PA [Aedes aegypti]
Length = 612
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 32/232 (13%)
Query: 39 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
K Y +W YAG A+ KK P V++ L + + DGR++ AE+E F+L+
Sbjct: 409 IKGYHPYWLCKPGGYAGVAIYSKK--MPFNVTYGLGDE--EQDADGRLLTAEYEKFFLVC 464
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN G + +R +WD++ +++ K P+I CGD+NV+HEEID+++P+
Sbjct: 465 VYVPNAG--RGLVTLPKRMRWDEKFHKYLKDLDAKKPVILCGDMNVAHEEIDLANPKT-- 520
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF-SWSGN 216
NK++ GFT ER+ +L G +D +R L+ E+ F ++ GN
Sbjct: 521 ----------NKKNA---GFTPEEREGMTKLLSLG-FVDTFRQLYPEQSGAYTFWTYMGN 566
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K G R+DYFI SE +++ + G YGSDHCP++L L
Sbjct: 567 ARAKNVG--WRLDYFITSERFVGKVV------DNVIRSGVYGSDHCPLTLFL 610
>gi|237743089|ref|ZP_04573570.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
gi|229433385|gb|EEO43597.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
Length = 253
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 125/238 (52%), Gaps = 43/238 (18%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ +SW
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW--- 199
Query: 217 PIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
YRG+ RIDYF+VS+EL+ ++ E+ IE GSDHCPV L L
Sbjct: 200 --WSYRGRARENNAGWRIDYFVVSKELEKNLVDAEIHTQ-IE-----GSDHCPVVLFL 249
>gi|237740967|ref|ZP_04571448.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294784430|ref|ZP_06749721.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
gi|229431011|gb|EEO41223.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294488002|gb|EFG35357.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
Length = 253
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 124/238 (52%), Gaps = 43/238 (18%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKQ--EPLTVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+HEEID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKKPVVVCGDLNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ +SW
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW--- 199
Query: 217 PIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
YRG+ RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 200 --WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLIL 249
>gi|323342310|ref|ZP_08082542.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463422|gb|EFY08616.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 252
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ + +P V++ +++ ++ +GRVI E++ F+L+ Y
Sbjct: 51 YYAYYNYAEKKGYSGTAVYTR--IKPLNVTYGIQED--EHNTEGRVITCEYDDFFLVCVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ +E++ + KP++ CGDLNV+H+EID+ +P +A
Sbjct: 107 TPNS--QPELKRIDYRMQWEDDFREYLKMLDETKPVVLCGDLNVAHKEIDLKNP---SAN 161
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+ N PGF+ ER++F +L G ID++R LH +D WS
Sbjct: 162 RKN------------PGFSDQEREQFTNLLDAG-FIDSFRELHPNA-IDRYSWWSYRANA 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYF+VSE L++ I A ++ L+ GSDHCPV ++L+
Sbjct: 208 RSRNTGWRIDYFVVSERLRNAIEAADI------LDQVLGSDHCPVMIKLN 251
>gi|393911285|gb|EFO27125.2| exodeoxyribonuclease III [Loa loa]
Length = 313
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 30/222 (13%)
Query: 51 SKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 107
S + G LL K+ +P KV+++ + K+ L GR+I+AE+E +YL+N Y PN+G
Sbjct: 116 SGHGGVLLLTKE--EPIKVTYTFDDKSKSGLDGNGKGRIIIAEYENYYLINAYVPNSG-- 171
Query: 108 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 166
+ +R+ WD F+ + KP+++ GDLNV+H+EID+++P+
Sbjct: 172 RGLVNLDKRKFWDDCYFSFIKKLDLNKPIVYVGDLNVAHQEIDLANPK----------TN 221
Query: 167 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 226
NK GFT ER F +L G +D +R L+ EK+ F WS + +
Sbjct: 222 YNK----TAGFTDQERNDFTRLLDAG-FVDVFRRLNPEKEGVYTF-WSNMRNAREKNVGW 275
Query: 227 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R+DYF+VSE + +++ C++ L GSDHCP+SL +
Sbjct: 276 RLDYFVVSERIMNKVKECDI------LCSVKGSDHCPLSLTI 311
>gi|178743|gb|AAA58371.1| apurinic endonuclease [Homo sapiens]
Length = 318
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 127/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + SDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ASDHCPITLYLA 317
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 35/243 (14%)
Query: 30 LMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL 88
+ R + F NY+ +W+ A+ K Y+G A+ K +P V + + ++ +GR+I
Sbjct: 38 MQREQAEFDFPNYEEYWNSAEKKGYSGVAIFSK--IKPLSVEYDM--GIAHHDKEGRIIT 93
Query: 89 AEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 147
AEF FYL+N Y PN+ K E + R +W+ + F+ S KP+I CGDLNV+H+E
Sbjct: 94 AEFSDFYLVNVYTPNS--KRELERLEYRMEWEDDFRTFLKNLESKKPVIVCGDLNVAHKE 151
Query: 148 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 207
ID+ +P K + GFT ER++ A+L G D YR + EK
Sbjct: 152 IDLKNP---------------KTNRRNAGFTDEEREKMSALLDSG-FTDTYRHFYPEK-- 193
Query: 208 DCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 265
++W + +GK R RIDYF+ S+ L R+ + + + GSDHCPV
Sbjct: 194 QGAYTW-WSYMGKARANNTGWRIDYFLCSKILDSRLKSASIYPEIL------GSDHCPVG 246
Query: 266 LEL 268
+E+
Sbjct: 247 IEI 249
>gi|325269387|ref|ZP_08136004.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
gi|324988308|gb|EGC20274.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
Length = 249
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 120/233 (51%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ AD K Y+GTA+ K +P V++ + +++ +GRVI E + FYL+
Sbjct: 47 FPGYTSYWNYADKKGYSGTAIFTKH--KPLDVTYGIGMD--EHDHEGRVITLEMDDFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++ R KW+K Q ++ KP++ CGD+NV+HEEID+ +P
Sbjct: 103 TVYTPNS--QDGLRRLDYRMKWEKDFQNYLHWLDEKKPVVVCGDMNVAHEEIDIKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G ID +R L+ E+ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEEREKMTQLLDSG-FIDTFRSLYPEQ---VTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF++SE L+DR+ ++ GSDHCP+ ++L
Sbjct: 202 RFRARERNTGWRIDYFLISERLRDRLEDAKIHTE------IMGSDHCPIEVDL 248
>gi|312067871|ref|XP_003136947.1| exodeoxyribonuclease III family protein [Loa loa]
Length = 306
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 30/222 (13%)
Query: 51 SKYAGTALLVKKCFQPKKVSFSLE---KTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 107
S + G LL K+ +P KV+++ + K+ L GR+I+AE+E +YL+N Y PN+G
Sbjct: 109 SGHGGVLLLTKE--EPIKVTYTFDDKSKSGLDGNGKGRIIIAEYENYYLINAYVPNSG-- 164
Query: 108 EEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 166
+ +R+ WD F+ + KP+++ GDLNV+H+EID+++P+
Sbjct: 165 RGLVNLDKRKFWDDCYFSFIKKLDLNKPIVYVGDLNVAHQEIDLANPK----------TN 214
Query: 167 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 226
NK GFT ER F +L G +D +R L+ EK+ F WS + +
Sbjct: 215 YNK----TAGFTDQERNDFTRLLDAG-FVDVFRRLNPEKEGVYTF-WSNMRNAREKNVGW 268
Query: 227 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R+DYF+VSE + +++ C++ L GSDHCP+SL +
Sbjct: 269 RLDYFVVSERIMNKVKECDI------LCSVKGSDHCPLSLTI 304
>gi|331085596|ref|ZP_08334680.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407483|gb|EGG86985.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 250
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ +P V++ + +++ +GRVI EFE FY + Y
Sbjct: 50 YHQFWNYAERKGYSGTAIFTKQ--EPLSVAYGIGME--EHDKEGRVITLEFEEFYFVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ +++ + K P+I+CGDLNV+H EID+ +P
Sbjct: 106 TPNS--QNELARLDYRMQWETEFLKYLKKLEAKKPVIFCGDLNVAHREIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER +F +L G ID +R+ + E++ + WS
Sbjct: 158 ---------KTNQKNAGFTDEERGKFTELLSAG-FIDTFRYFYPEQEGIYSW-WSYRFSA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LKDR+ ++ L GSDHCPV L+
Sbjct: 207 RAKNAGWRIDYFCVSECLKDRLRDAKI------LTDVMGSDHCPVELDF 249
>gi|452823263|gb|EME30275.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 331
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 121/233 (51%), Gaps = 33/233 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
+ IW K Y+GTA+ ++ +P V + L++ K+ +GRVI E+E ++L+N Y
Sbjct: 126 HDIWNHCTARKGYSGTAIFTRE--EPLSVLYGLQEE--KHNEEGRVITLEYEKYFLVNAY 181
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN G ++ R W+K + +++ + K P+I+ GDLNV+H+EID+
Sbjct: 182 VPNAGEGLRRLNY-RIDSWEKDMCQYLCGLNQKKPVIYTGDLNVAHQEIDI--------- 231
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
Y P E GFT ER++F +L+ G +DA+R+L+ + F+ WS
Sbjct: 232 ----YQPKGHEK--HAGFTPQERQKFTDLLQCG-FVDAFRYLYPHRQ---SFTYWSKRAK 281
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
K R R+DYF+ SE L I+ CEM E Y SDHCP+ L L A
Sbjct: 282 AKERNHGWRLDYFVTSERLVPCILECEM------FENIYISDHCPLMLHLDIA 328
>gi|303237381|ref|ZP_07323951.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
gi|302482768|gb|EFL45793.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
Length = 250
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 34/235 (14%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
F Y+ +W+ A+ K Y+GTA+ K QP V++ L +++ +GRVI E E FYL
Sbjct: 46 AFDGYESYWNYAEKKGYSGTAIFTKH--QPLNVTYGL--GIEEHDHEGRVITLEMENFYL 101
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN+ ++ + R +W+ Q ++ + KP+I CGDLNV+HEEID+ +P
Sbjct: 102 VTCYTPNS--QDGLKRLEYRMRWEDDFQTYIKRLDEKKPVIVCGDLNVAHEEIDLKNP-- 157
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 214
K + GF+ ER + L +G ID++R L+ E+ +S WS
Sbjct: 158 -------------KTNRKNAGFSDEERAKMTQFLGKG-FIDSFRTLYPEQ---VTYSWWS 200
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYF++S+ L+ +++ ++ YGSDHCPV +EL+
Sbjct: 201 YRFKAREKNAGWRIDYFLLSDRLRAQLVDAKIHTE------VYGSDHCPVEVELN 249
>gi|262067405|ref|ZP_06027017.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378968|gb|EFE86486.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 253
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 119/233 (51%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELQRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER +F +L+ G D +R+ + D++ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLESG-FTDTFRYFY--PDLEHAYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFIVS+ L ++ E+ GSDHCPV L L
Sbjct: 203 RANARKNNTGWRIDYFIVSKALDKYLVDAEIHAQT------EGSDHCPVVLFL 249
>gi|291561139|emb|CBL39938.1| exodeoxyribonuclease III [butyrate-producing bacterium SS3/4]
Length = 284
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ +P V++ L +++ +GRVI AEF +Y++ Y
Sbjct: 84 YHQYWNYAEKKGYSGTAMFTKE--EPIAVTYGL--GIEEHDHEGRVITAEFPEYYVVTCY 139
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ ++ R +W+ + ++ + + KP+I+CGDLNV+H+EID+ +P
Sbjct: 140 TPNS--QDGLKRLDYRMQWEDAFRAYLKELETKKPVIFCGDLNVAHQEIDLKNP------ 191
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER +F +L+ G +D +R+ + +++ + WS
Sbjct: 192 ---------KTNRKNAGFSDEERAKFTELLEAG-FVDTFRYFYPDQEGIYSW-WSYRFSA 240
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LKDR++ ++ + GSDHCPV L++
Sbjct: 241 RAKNAGWRIDYFCVSESLKDRLVDAKIHTEVM------GSDHCPVELDI 283
>gi|226322793|ref|ZP_03798311.1| hypothetical protein COPCOM_00565 [Coprococcus comes ATCC 27758]
gi|225208774|gb|EEG91128.1| exodeoxyribonuclease III [Coprococcus comes ATCC 27758]
Length = 231
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 115/228 (50%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
+Q W S Y+GTA+ KK +P V++ L +++ +GRVI EFE FY + Y
Sbjct: 32 HQYWNSAVKKGYSGTAIFTKK--EPLSVTYGL--GIEEHDQEGRVITLEFEDFYFITVYT 87
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ + E R W+ ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 88 PNS--QSELARLDYRMTWEDAFLAYLKKLEETKPVIFCGDLNVAHKEIDLKNP------- 138
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GFT ER +F A+L G ID YR+ + +K+ + WS +
Sbjct: 139 --------KTNRKNAGFTDEERAKFSALLDAG-FIDTYRYFYPDKEGIYSW-WSYRFKAR 188
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF S+ L+ R+ ++ L +GSDHCPV L+
Sbjct: 189 EKNAGWRIDYFCTSKALESRLEDAKI------LTNVFGSDHCPVELDF 230
>gi|34763743|ref|ZP_00144662.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886479|gb|EAA23735.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 253
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 124/238 (52%), Gaps = 43/238 (18%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+HEEID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKKPVVVCGDLNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G +D +R+ + +++ +SW
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FVDTFRYFY--PNLEQVYSW--- 199
Query: 217 PIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
YRG+ RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 200 --WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLIL 249
>gi|325660677|ref|ZP_08149307.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473038|gb|EGC76246.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
Length = 250
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ +P V++ + +++ +GRVI EFE FY + Y
Sbjct: 50 YHQFWNYAERKGYSGTAIFTKQ--EPLSVAYGIGME--EHDKEGRVITLEFEEFYFVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ +++ + K P+I+CGDLNV+H EID+ +P
Sbjct: 106 TPNS--QNELARLDYRMQWETEFLKYLKKLEAKKPVIFCGDLNVAHREIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER +F +L G ID +R+ + E++ + WS
Sbjct: 158 ---------KTNRKNAGFTDEERGKFTELLSAG-FIDTFRYFYPEQEGIYSW-WSYRFSA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LKDR+ ++ L GSDHCPV L+
Sbjct: 207 RAKNAGWRIDYFCVSECLKDRLRDAKI------LTDVMGSDHCPVELDF 249
>gi|440801517|gb|ELR22535.1| exodeoxyribonuclease III, putative [Acanthamoeba castellanii str.
Neff]
Length = 317
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 33/230 (14%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+W+ + +K YAGTA K +P V++ + +++ +GRVI EF+ FYL+NTY P
Sbjct: 117 YWNHSVNKLGYAGTATFSK--VKPVSVTYGI--GIAEHDGEGRVITTEFDRFYLVNTYIP 172
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N G K E + R++W+K ++ KP++WCGDLNV+H +ID+++P
Sbjct: 173 NAGQKLERLGY--RQEWNKDFLAYLKNLEQTKPVVWCGDLNVAHHDIDIANP-------- 222
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 221
K + GFT ER+ FG +L+ G +D +R H+ D+ WS +
Sbjct: 223 -------KTNQKTAGFTKEERRDFGQLLESG-FVDTFR--HQNPDLQQFTYWSNRFNCRA 272
Query: 222 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
+ R+DYF+VS KD + C+ GSDHCP+ L + +A
Sbjct: 273 KNLGWRLDYFVVS---KDFLPECD---KSFVRPNALGSDHCPIGLLVRKA 316
>gi|374997767|ref|YP_004973266.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357216133|gb|AET70751.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 250
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 120/235 (51%), Gaps = 33/235 (14%)
Query: 38 PFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
PF+ Y +W+ A K Y+GTA+ K +P VS+ + +++ +GRVI E+E F
Sbjct: 44 PFQLDGYYSYWNFAQKKGYSGTAIFSKT--EPINVSYGIGME--EHDQEGRVITLEYEPF 99
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
+L+ Y PN+ + R KW+ ++ KP+I+CGDLNV+H+EID+ +P
Sbjct: 100 FLVTVYTPNS--QRGLARLDYRMKWEDDFLAYLKTLEKSKPIIFCGDLNVAHQEIDLKNP 157
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
+ NK++ GFT ER +F +L G ID++RF + E+ D W
Sbjct: 158 K------------TNKKN---AGFTSEERDKFSQVLNHG-FIDSFRFFYPEQ-RDAYTWW 200
Query: 214 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
S + RIDYF VS LKD++ + YGSDHCPV LE+
Sbjct: 201 SYMFNARANNAGWRIDYFCVSAGLKDQLKNVSI------YSDVYGSDHCPVGLEV 249
>gi|251779069|ref|ZP_04821989.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083384|gb|EES49274.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 251
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 31/227 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ K ++ SL +++ +GRV+ EFE FYL+N Y
Sbjct: 51 YYDYWNYAEKKGYSGTAVFSKE----KPLNISLGIGIEEHDKEGRVLTLEFEEFYLVNVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ +++ R W+ + ++ + + K +I CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--QQKLARIDYRMAWENDFRHYLNELNKDKSVIVCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER++FG +LK G ID YR+ + K+ + WS
Sbjct: 159 ---------KNNRNNAGFSDEEREKFGELLKSG-FIDTYRYFYPGKEGAYSW-WSYRFNA 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+VS++ +DR++ + IE GSDHCPV L
Sbjct: 208 RANNAGWRIDYFLVSKDFEDRLVDANIHTQ-IE-----GSDHCPVEL 248
>gi|32024|emb|CAA42437.1| HAP1 [Homo sapiens]
Length = 318
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 127/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT E + FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQEAQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>gi|402312986|ref|ZP_10831909.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
gi|400367562|gb|EJP20578.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
Length = 258
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 121/231 (52%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+G A+ K +P V++ + +++ +GRVI AE+E FYL+ Y
Sbjct: 57 YYDYWNYAQKKGYSGVAVFTKD--KPLNVTYGI--GIEEHDNEGRVITAEYEDFYLITCY 112
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + R W+ ++L+ KP+I+CGDLNV+H+EID+ +P
Sbjct: 113 TPNS--QRGLTRLDYRMTWEDAFLSYILKLEEKKPVIFCGDLNVAHKEIDLKNP------ 164
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER + IL G D++R L+ +K +SW + +G
Sbjct: 165 ---------KTNRKNAGFTDEERGKMDVILTSG-FCDSFRVLYPDKTD--AYSW-WSYMG 211
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + RIDYFIVS++LKDRI ++ GSDHCPV L++
Sbjct: 212 GARAKNVGWRIDYFIVSDKLKDRIKEAKIHSD------ILGSDHCPVELDI 256
>gi|347753480|ref|YP_004861045.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
gi|347585998|gb|AEP02265.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
Length = 251
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 35/230 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P V + + + + EP+GR++ E+E FYL+N Y
Sbjct: 50 YYQYWNYAERKGYSGTAVFTKK--EPLSVRYGVGED--RTEPEGRILTLEYEDFYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + + R +W+ R++ ++ + KP+I CGD+NV+H+EID+ +
Sbjct: 106 TPNS--QRDLARLGYRLEWEDRMRAYLTELDKKKPVIVCGDMNVAHQEIDLKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G GFT ER + +L G ID++R+ + E+ + ++W + +
Sbjct: 158 ---------KNNVGNSGFTAEERGKMTGLLNSG-FIDSFRYFYPER--EGAYTWW-SYMN 204
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 267
K R + + RIDYF+VS+ L R+ M GSDHCPV LE
Sbjct: 205 KVRERNIGWRIDYFLVSKRLAGRLKDAGMYPE------IMGSDHCPVFLE 248
>gi|315652833|ref|ZP_07905807.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485035|gb|EFU75443.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
Length = 259
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+G A+ K +P V++ + +++ +GRVI AE++ FYL+ Y
Sbjct: 58 YYDYWNYATKKGYSGVAVFTKD--KPINVTYGIGID--EHDNEGRVITAEYDEFYLITCY 113
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + R W+ ++ L+ KP+I+CGDLNV+H+EID+ +P
Sbjct: 114 TPNS--QRGLTRLDYRMTWEDAFLDYALKLEEKKPVIFCGDLNVAHKEIDLKNP------ 165
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER + IL G +D++R L+ +K +SW + +G
Sbjct: 166 ---------KTNRKNAGFTDEERAKMDIILSSG-FVDSFRLLYPDK--TDAYSW-WSYMG 212
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + RIDYFIVS +LKDRI ++ + GSDHCPV L++
Sbjct: 213 GARAKNVGWRIDYFIVSAKLKDRIKEAKIHSEVL------GSDHCPVELDI 257
>gi|406666269|ref|ZP_11074037.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
gi|405385808|gb|EKB45239.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
Length = 252
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 34/230 (14%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
YQ W S Y+GTA+ K +P V + +E E GR++ E+E FYL+NTY
Sbjct: 51 YQYWHSAVKKGYSGTAVFTKH--EPLAVYYGIENEIAADE--GRILTLEYENFYLVNTYT 106
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN K + + R W+ R++ ++ + K P+I+CGDLNV+H E+D+ +
Sbjct: 107 PNA--KRDLTRLEERLLWEDRMRIYLKELDAKKPVIYCGDLNVAHSELDIKNV------- 157
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + G GFT ER + +L G D +R H D+ F+W + + K
Sbjct: 158 --------KSNIGNSGFTYEERGKMTDLLTSG-FTDTFRHFH--PDVTDHFTW-WSYMAK 205
Query: 221 YRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R + + RIDYFI+S+ L ++I + + GSDHCP+ L+L
Sbjct: 206 VRERNIGWRIDYFIISDRLVEKIEEASIHSEIL------GSDHCPIVLKL 249
>gi|404483949|ref|ZP_11019164.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
gi|404342961|gb|EJZ69330.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
Length = 276
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 124/239 (51%), Gaps = 38/239 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P + +Y W+ A K Y+G A+ K +P V++ + +++ +GRVI AE+E
Sbjct: 70 LDLPGYYDY---WNYAQKKGYSGVAVFTKD--KPLNVTYGI--GIEEHDNEGRVITAEYE 122
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
FYL+ Y PN+ + R W+ ++L+ KP+I+CGDLNV+H+EID+
Sbjct: 123 DFYLITCYTPNS--QRGLTRLDYRMTWEDAFLSYILKLEEKKPVIFCGDLNVAHKEIDLK 180
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GFT ER + IL G D++R L+ +K +
Sbjct: 181 NP---------------KTNRKNAGFTDEERGKMDVILTSG-FCDSFRVLYPDK--TDAY 222
Query: 212 SWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
SW + +G R K + RIDYFIVS++LKDRI ++ GSDHCPV L++
Sbjct: 223 SW-WSYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSD------ILGSDHCPVELDI 274
>gi|449664158|ref|XP_002161039.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Hydra
magnipapillata]
Length = 352
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 124/230 (53%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y ++W A K +G +L K +P KV++ L +++ +GR+I AEFE +Y++ TY
Sbjct: 151 YYMYWCNAKKKGCSGVSLWCK--LKPLKVTYGL--GIKEHDSEGRLITAEFEKYYIITTY 206
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+G K + RR W+ + +V + KP+I CGD NV+H EID+++P
Sbjct: 207 VPNSGQKLIRLDY--RRIWNTDYKNYVGELKKKKPVIMCGDFNVAHTEIDIANPN----- 259
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
NK + GFT ER F A+L++G ID +R L+ EK F W+
Sbjct: 260 -------SNKRN---AGFTEEERSDFTALLEDG-YIDTFRKLNPEKTGAYTF-WTYMMNA 307
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + K R+DYFIV+++++D I C+ + GSDHCP+ L L+
Sbjct: 308 RSKNKGWRLDYFIVTKDIEDDI--CD----SVIRSSVMGSDHCPIVLNLA 351
>gi|154502978|ref|ZP_02040038.1| hypothetical protein RUMGNA_00800 [Ruminococcus gnavus ATCC 29149]
gi|153796517|gb|EDN78937.1| exodeoxyribonuclease III [Ruminococcus gnavus ATCC 29149]
Length = 250
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y+ +W+ A K Y+GTA+ KK +P V++ + +++ +GRVI EFE FY +
Sbjct: 47 LEGYEQYWNYAVKKGYSGTAVFTKK--KPLNVTYGI--GIEEHDQEGRVITLEFEEFYFV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ + E R KW+ ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--QNELARLDYRMKWESDFLAYLKKLEEEKPVIFCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ + WS
Sbjct: 158 ------------KTNRKNAGFTDEERGKFTEMLNAG-FIDTFRYFYPDQEGIYSW-WSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LKDR+ ++ L GSDHCP+ L+L
Sbjct: 204 FSARAKNAGWRIDYFCVSECLKDRLADAKI------LTDVMGSDHCPIELDL 249
>gi|302334904|ref|YP_003800111.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
gi|301318744|gb|ADK67231.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
Length = 263
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 119/226 (52%), Gaps = 33/226 (14%)
Query: 46 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 104
W+ A+ K Y+GTA+ ++ P +V + E GRV EF TF+ ++ Y PN+
Sbjct: 66 WNFAERKGYSGTAVFSRE--DPLRVIRQIGSDVADDE--GRVCALEFPTFWFVDVYTPNS 121
Query: 105 GWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 163
K+ + R WD+R + F+L+ KP++ CGD NV+H+EID+ +P
Sbjct: 122 --KQGLARIEERMGWDERFRLFLLELDAHKPIVTCGDFNVAHQEIDLRNPS--------- 170
Query: 164 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYR 222
N E+ PGF+ AER FG +L G D +R L+ D++ +S WS + R
Sbjct: 171 ---TNHEN---PGFSDAERDSFGRLLDAG-FTDTFRSLN--PDLEGAYSWWSYRMRARER 221
Query: 223 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RIDYF+ SE + DRI +G I E F GSDHCP+ L++
Sbjct: 222 NVGWRIDYFLTSERVADRI-----EGASIHDEVF-GSDHCPIELQI 261
>gi|295110263|emb|CBL24216.1| exodeoxyribonuclease III [Ruminococcus obeum A2-162]
Length = 253
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ + Y+GTA+ KK +P V + A ++ +GRVI EFE FY + Y
Sbjct: 50 YHQYWNYANRRGYSGTAVFTKK--EPLSVVNGIGIEA--HDKEGRVITLEFEEFYFVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W++ ++L+ KP+I CGD+NV+H+EID+ +P
Sbjct: 106 TPNS--QSELRRLEYRMEWERDFLAYLLKLQEKKPVICCGDMNVAHQEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER F +L+ G +D +R+ + +K+ + WS
Sbjct: 158 ---------KTNRKNAGFTDEERACFSRMLESG-FVDTFRYFYPDKEGIYSW-WSYRFKA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYFIVS LKDR +Q I E GSDHCPV L++
Sbjct: 207 REKNAGWRIDYFIVSPSLKDR-----LQDASIHTE-IMGSDHCPVELDI 249
>gi|422315442|ref|ZP_16396878.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
gi|404592436|gb|EKA94265.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
Length = 253
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER +F +L+ G ID +R+ + D++ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLESG-FIDTFRYFY--PDLEHVYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VS+ L+ ++ E+ GSDHCPV L L
Sbjct: 203 RANARKNNTGWRIDYFVVSKALEKYLVDAEIHAQT------EGSDHCPVVLFL 249
>gi|420446253|ref|ZP_14945154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
gi|393059442|gb|EJB60322.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
Length = 236
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 33 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGID--IKEHDKEGRVITCEFESFYLV 88
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 89 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 143
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ERK+F +L G ID +R+ + K+ + WS
Sbjct: 144 ------------KTNRKNAGFSDEERKKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 189
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 190 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 235
>gi|340349685|ref|ZP_08672691.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|387133768|ref|YP_006299740.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|445112647|ref|ZP_21377202.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
gi|339610439|gb|EGQ15291.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|386376616|gb|AFJ08042.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|444841476|gb|ELX68491.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
Length = 250
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 121/235 (51%), Gaps = 34/235 (14%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
F Y+ +W+ AD K Y+GTA+ K +P VS+ L +++ +GRVI E E FYL
Sbjct: 46 AFDGYESYWNYADKKGYSGTAIFTKH--KPLSVSYGLGID--EHDHEGRVITLEMEKFYL 101
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN ++ R +W+ Q +V + KP+I CGDLNV+HEEID+ +P
Sbjct: 102 VTCYTPNA--QDGLKRLDYRMQWEDDFQAYVKRLDEKKPVIVCGDLNVAHEEIDLKNP-- 157
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 214
K + GF+ ER + L G ID++R L+ E+ +S WS
Sbjct: 158 -------------KTNRKNAGFSDEERAKMTQFLGNG-FIDSFRTLYPEQ---VTYSWWS 200
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYF++S L+++++ ++ YGSDHCPV +EL+
Sbjct: 201 YRFKAREKNAGWRIDYFLLSNRLREQLVDAKIHTE------VYGSDHCPVEVELN 249
>gi|381180194|ref|ZP_09889037.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
gi|380767904|gb|EIC01900.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
Length = 253
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 118/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A K Y+GTA+ K +P VS+ + +++ +GRVI E+ F+L+ Y
Sbjct: 52 YKEYWNYAQKKGYSGTAIFTKH--EPLSVSYGI--GIEQHDTEGRVITLEYADFFLVTVY 107
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + F++ K P+I CGD+NV+HEEID+ +P +A
Sbjct: 108 TPNS--QNELKRLDYRMAWEDDFRNFLVSLKAKKPVIVCGDMNVAHEEIDIKNP---SAN 162
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+ N GFT ER + +L G ID +R L+ E D WS
Sbjct: 163 RRNA------------GFTDEERAKMTELLASG-FIDTFRTLNPELK-DAYSWWSYRFHA 208
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VS+++K RI ++ + GSDHCPV LEL
Sbjct: 209 RERNAGWRIDYFLVSDDIKPRISDAKIHADIL------GSDHCPVELEL 251
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 122/235 (51%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F NY+ +W+ A+ K Y+G A+ KK K +S + + ++ +GR+I AE+ F+L+
Sbjct: 51 FPNYEEYWNSAEKKGYSGVAIFSKK----KPLSVAYDMGISHHDKEGRIITAEYNDFFLV 106
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ K E + R +W+ + F+ KP+I CGDLNV+H+EID+ +P
Sbjct: 107 NVYTPNS--KRELERLEYRMEWEDDFRNFLKNLEVTKPVIVCGDLNVAHKEIDLKNP--- 161
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER++ +L G D +R+ H ++ +SW +
Sbjct: 162 ------------KTNRRNAGFTDEEREKMSVLLDSG-FTDTFRYFHPT--LEGAYSW-WS 205
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+GK R RIDYF+ S+ L ++ + + +GSDHCPV LE++
Sbjct: 206 YMGKARENNTGWRIDYFLCSKALDSKLKSASIYPE------IFGSDHCPVGLEIN 254
>gi|269123555|ref|YP_003306132.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
gi|268314881|gb|ACZ01255.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
Length = 251
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ +P VS+ + +++ +GRVI AEFE +Y + Y
Sbjct: 51 YYTYYNYAEKKGYSGTAIFTD--VEPISVSYGI--GIEEHDKEGRVITAEFEDYYFVTVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K E R W+ + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KNELERLDYRMIWEDEFRSYLKKLEEKKPVIVCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFTI ER +F +++ G ID +R+ + +K + WS
Sbjct: 159 ---------KSNTRSAGFTIEERNKFTELIENG-FIDTFRYFYPDKIHAYSW-WSYRGNA 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF VS LKDR++ E+ + GSDHCPV L ++
Sbjct: 208 RKNNTGWRIDYFCVSSSLKDRLVDAEIH------DKVEGSDHCPVVLYIN 251
>gi|171915906|ref|ZP_02931376.1| exodeoxyribonuclease III [Verrucomicrobium spinosum DSM 4136]
Length = 250
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 32/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK+YQ+ W+ A K Y+GTA+L ++ + + +++ ++ +GRVI EF +Y++
Sbjct: 48 FKDYQVVWNAAQKKGYSGTAILTRQPIKSHAIGMGIDE----HDKEGRVITVEFPDYYVV 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN + E R WD + ++ KP++ CGDLNV+H EID++ P
Sbjct: 104 NVYTPNA--QAELARLPYRLLWDDAFRLYLKNLEQTKPVLACGDLNVAHNEIDIARP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
KE+ PGF+ ER FG +L+ G +D +R +S+ N
Sbjct: 159 ------------KENRFSPGFSDQERASFGKLLESG-FVDTFRHFDSRPHQYSWWSYRAN 205
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
G G RIDY++ S+ LKD + + I +GSDHCPV L +
Sbjct: 206 ARGNNVG--WRIDYWLASQGLKDGLKS------SIIRPDIHGSDHCPVELVM 249
>gi|336066887|ref|YP_004561745.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296833|dbj|BAK32704.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 251
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ + +P V++ +++ ++ +GRVI E++ F+L+ Y
Sbjct: 50 YYAYYNYAEKKGYSGTAVYTR--IKPLNVTYGIQED--EHNTEGRVITCEYDDFFLVCVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ +E++ + KP++ CGDLNV+H+EID+ +P +A
Sbjct: 106 TPNS--QPELKRIDYRMQWEDDFREYLKMLDETKPVVLCGDLNVAHKEIDLKNP---SAN 160
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+ N PGF+ ER++F +L G ID++R LH +D WS
Sbjct: 161 RKN------------PGFSDQEREQFTNLLDAG-FIDSFRELHPNA-IDRYSWWSYRANA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYF+VSE L++ I A ++ L+ GSDHCPV ++L+
Sbjct: 207 RSRNIGWRIDYFVVSERLRNAIEAADI------LDQVLGSDHCPVMIKLN 250
>gi|331002672|ref|ZP_08326187.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
gi|330407085|gb|EGG86589.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
Length = 262
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 34/230 (14%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
Y W A Y+G A+ K +P V++ + +++ +GRVI AE++ FYL+ Y
Sbjct: 62 YDYWNYAAKKGYSGVAVFTKD--KPIGVTYGI--GIEEHDNEGRVITAEYDDFYLITCYT 117
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ + R W+ ++VL+ KP+I+CGDLNV+H+EID+ +P
Sbjct: 118 PNS--QRGLTRLDYRMAWEDAFLDYVLKLEEKKPVIFCGDLNVAHKEIDLKNP------- 168
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GFT ER + +L G D++R L+ +K + +SW + +G
Sbjct: 169 --------KTNRKNAGFTDEERGKMDIVLSSG-FADSFRVLYPDK--EGAYSW-WSYMGG 216
Query: 221 YRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + RIDYFIVS++LKDRI ++ GSDHCPV L++
Sbjct: 217 ARAKNVGWRIDYFIVSDKLKDRIKEAKIHSD------ILGSDHCPVELDI 260
>gi|254168985|ref|ZP_04875824.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197622091|gb|EDY34667.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 32/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ +Y +W+ A K YAGTAL K +P V F + + K++ +GRVI AE+E FYL+
Sbjct: 52 YPDYHKYWNPAKKKGYAGTALFTK--IEPLNVKFGIGED--KFDSEGRVITAEYEKFYLV 107
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + + ++DK I ++ + KP+I CGD NV+H+EID+++P
Sbjct: 108 NAYFPNS--QHGLTRLDFKIEFDKLIHSYLNELRKKKPVILCGDFNVAHKEIDLANP--- 162
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K++ GFT ER L++G ID +R KE W+
Sbjct: 163 ------------KQNVKNAGFTPQERAWMDKFLQDG-YIDTFRMFTKEGGHYTW--WTYR 207
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R R+DYF+VSEELKD++ + + L YGSDH P+++ L
Sbjct: 208 FKARERNIGWRVDYFVVSEELKDKVKSSWI------LSEVYGSDHAPIAMVL 253
>gi|56963720|ref|YP_175451.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
gi|56909963|dbj|BAD64490.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
Length = 260
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 132/266 (49%), Gaps = 33/266 (12%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
Q++ D +E KL + S Y+ +W+ A+ K Y+GTA+ K P V++
Sbjct: 24 QQVDADVFCLQETKL--QKGQISLELPGYEQYWNDAERKGYSGTAIFTKH--SPLSVTYG 79
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCS 131
+ E +GRVI EFET+Y++ Y PN K + + R +W+K +E++ L +
Sbjct: 80 IGDHFP--ENEGRVITLEFETYYVVTMYTPNA--KRDLSRLPYRLQWEKAAREYLTLLAT 135
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP+++CGDLNV+H+ IDV + ++ + G GFT ER FG +L+
Sbjct: 136 QKPVVFCGDLNVAHQPIDVRN---------------DRANVGNSGFTDEERAEFGKLLEA 180
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 251
G +D +R + + D D WS + R RIDYF++S L ++ + +
Sbjct: 181 G-FVDTFRHFYPD-DEDAFTWWSYMANVRARNIGWRIDYFLISRALMPYLVDASIHSSVL 238
Query: 252 ELEGFYGSDHCPVSLELSEASSDSEK 277
GSDHCP+ L L ++S +
Sbjct: 239 ------GSDHCPIELCLDLQPNESSR 258
>gi|260663817|ref|ZP_05864702.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
gi|260551578|gb|EEX24765.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
Length = 279
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 34/243 (13%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F Y + W A YAGT L K+ PK V++ + +GR+I EF+ F
Sbjct: 64 FAGYTVVWRSSVEPARKGYAGTMYLYKESLTPK-VTYPTIGAPEPMDEEGRIITLEFKNF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
YL Y PN+G + R++WD R +E++ + KP+I GD NV+HEEID++HP
Sbjct: 123 YLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTELDRQKPVIASGDFNVAHEEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
+ GFT ER++F A+L G D++R LH D +SW
Sbjct: 181 ---------------ANNHHSAGFTDEEREKFTALLAAG-FTDSFRSLH--PDETGAYSW 222
Query: 214 SGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
K RIDY++VS+ L D++++ M G DH P+ L+++
Sbjct: 223 WAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMIDSGER------RDHAPIQLDINIP 276
Query: 272 SSD 274
++D
Sbjct: 277 AAD 279
>gi|160936797|ref|ZP_02084163.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
gi|158440289|gb|EDP18035.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
Length = 251
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K+ +P VS+ + +++ +GRVI AEF +Y++ Y
Sbjct: 51 YHQYWNYARKKGYSGTAMFTKE--EPVSVSYGIGME--EHDTEGRVITAEFPEYYVVTCY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ ++ R KW+ ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--QDGLARLDYRMKWEDDFLAYLKKLEENKPVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F +L G +D +R+ + D++ +S WS
Sbjct: 159 ---------KTNRKNAGFTDEERGKFTDLLAAG-FVDTFRYFY--PDLEGTYSWWSYRFS 206
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LKDR+++ + + GSDHCPV L +
Sbjct: 207 ARAKNAGWRIDYFCVSESLKDRLVSASIHNTVM------GSDHCPVELVI 250
>gi|443631581|ref|ZP_21115762.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443349386|gb|ELS63442.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 252
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 121/231 (52%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y ++W+ A K Y+GTA+ K+ +P++V + + +++ +GRVI EFE +++ Y
Sbjct: 51 YHMYWNYAVKKGYSGTAVFSKQ--EPQRVMYGI--GIEEHDQEGRVITLEFENMFVMTVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 107 TPNA--KRGLERIDYRMQWEEDLLSYILELDQKKPVILCGDLNVAHQEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER F L+ G ID++R H D++ +SW G
Sbjct: 159 ---------KANRNNAGFSDQERGAFTRFLEAG-FIDSFR--HVYPDLEGAYSWWSYRAG 206
Query: 220 -KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYF+VSE LKD+I + + GSDHCPV L ++
Sbjct: 207 ARDRNIGWRIDYFVVSERLKDQIEDASISADVM------GSDHCPVELMIN 251
>gi|188588613|ref|YP_001921245.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|188498894|gb|ACD52030.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
Length = 251
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ K ++ SL +++ +GRV+ EFE FYL+N Y
Sbjct: 51 YYDYWNYAEKKGYSGTAVFSKE----KPLNISLGIGIEEHDKEGRVLTLEFEEFYLVNVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ +++ R W+ ++++ + + K +I CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--QQKLARIDYRMAWENDFRDYLNELNKDKSVIVCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER++F +LK G ID YR+ + +K+ + WS
Sbjct: 159 ---------KNNRNNAGFSDEEREKFDELLKSG-FIDTYRYFYPDKEGAYSW-WSYRFNA 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+VS++ +DR++ + IE GSDHCPV L
Sbjct: 208 RANNAGWRIDYFLVSKDFEDRLVDANIHTQ-IE-----GSDHCPVEL 248
>gi|393199117|ref|YP_006460959.1| exonuclease III [Solibacillus silvestris StLB046]
gi|327438448|dbj|BAK14813.1| exonuclease III [Solibacillus silvestris StLB046]
Length = 252
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 34/230 (14%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
YQ W S Y+GTA+ K +P V + +E E GR++ E+E FYL+NTY
Sbjct: 51 YQYWHSAVKKGYSGTAVFTKH--EPLAVYYGIENEIAADE--GRILTLEYENFYLVNTYT 106
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN K + + R W+ R++ ++ + K P+I+CGDLNV+H E+D+ +
Sbjct: 107 PNA--KRDLTRLEERLLWEDRMRIYLKELDAKKPVIYCGDLNVAHSELDIKNV------- 157
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + G GFT ER + +L G D +R H D+ F+W + + K
Sbjct: 158 --------KSNIGNSGFTYEERGKMTDLLTSG-FTDTFRHFH--PDVTDHFTW-WSYMAK 205
Query: 221 YRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R + + RIDYFI+S+ L +++ + + GSDHCP+ L+L
Sbjct: 206 VRERNIGWRIDYFIISDRLVEKVEEASIHSEIL------GSDHCPIVLKL 249
>gi|261880757|ref|ZP_06007184.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
gi|270332533|gb|EFA43319.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
Length = 267
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 125/238 (52%), Gaps = 36/238 (15%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y+ +W+ A+ K Y+GTA+ K +P V+ + +++ +GRVI E+ FYL+
Sbjct: 58 FNGYRSYWNYAERKGYSGTAIYTKH--EPMNVACGM--GIEEHDNEGRVITLEYPEFYLV 113
Query: 98 NTYAPNNG----WKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSH 152
N Y PN+ + + R KW++ + ++ + + KP+I CGDLNV+H+EID+ +
Sbjct: 114 NVYTPNSQESLPGEVKPKRLGYRMKWEEDFRAYIKRLNETKPVIVCGDLNVAHQEIDIKN 173
Query: 153 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 212
K + GFT ER++ +L G ID +R ++ E+ + +S
Sbjct: 174 A---------------KTNRNNAGFTDEEREKMTILLDNG-FIDTFRTMYPEQVI---YS 214
Query: 213 -WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
WS + R RIDYF+VSE L+++I+ + YGSDHCPV LEL+
Sbjct: 215 WWSYRFRARERNTGWRIDYFLVSERLRNQIVDARIHTE------IYGSDHCPVELELN 266
>gi|182626631|ref|ZP_02954375.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422345838|ref|ZP_16426752.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
gi|177908025|gb|EDT70604.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|373227503|gb|EHP49817.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
Length = 250
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 33/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P V + + ++ +GRVI EFE F+++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDFFMVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F +L G ID +R+ + D++ +S WS
Sbjct: 158 ---------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDLEGVYSWWSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 206 ARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------GSDHCPVKL 247
>gi|389575850|ref|ZP_10165878.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
gi|389311335|gb|EIM56268.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
Length = 250
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 139/272 (51%), Gaps = 36/272 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A KD K +EL D +E KL + P + + +W+ A+ K Y+GTA+
Sbjct: 11 LRACMKKDFDKTFRELDADFFCIQESKLQEGQIEYCP--EGWNEYWNYAEKKGYSGTAIW 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
KK +V++ + + +++ +GRVI E++TF+L+ Y PN+ ++ R W
Sbjct: 69 AKK--PALQVTYGIGEE--EHDHEGRVITLEYDTFFLVTVYTPNS--QDGLKRLDYRMTW 122
Query: 120 DKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + ++ + KP+I CGDLNV+HEEID+ +P K + GFT
Sbjct: 123 EDSFRAYLGKLDEKKPVIVCGDLNVAHEEIDLKNP---------------KTNRKNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER +F +L G D++R+LH E D +S WS + + RIDYF+ SE +
Sbjct: 168 DEERGKFTELLDAG-FTDSFRYLHPE---DVEYSWWSYRFHAREKNAGWRIDYFLTSERV 223
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
K++I + + +GSDHCPV L++S
Sbjct: 224 KEKI------EQAVIHQEIFGSDHCPVELDIS 249
>gi|420469649|ref|ZP_14968365.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
gi|393083481|gb|EJB84186.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
Length = 250
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDIK--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEF 155
N Y PN+ ++ + R W+ ++F VL+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKVLELK-KPVIVCGDLNVAHNEIDLENP-- 157
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 -------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 203 MQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKNILGSDHCPVGLEL 249
>gi|345314093|ref|XP_001516262.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Ornithorhynchus anatinus]
Length = 320
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 30/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
++ W + AD + Y+G LL ++ +P VS+ + + +++ +GRVI+AEFE F L+ Y
Sbjct: 118 HRYWAAPADKEGYSGVGLLSRR--RPLSVSYGIGEE--EHDQEGRVIVAEFEAFVLVTVY 173
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+G R++WD+ + F+ Q + KPL+ CGDLNV+HEEID+ +P+
Sbjct: 174 VPNSG--RGLVRLDYRQRWDQAFRRFLQAQAARKPLVLCGDLNVAHEEIDLRNPKG---- 227
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
NK++ GFT ER+ FG +L L D++R L+ F W+
Sbjct: 228 --------NKKN---AGFTPQERQGFGELLGTVDLADSFRHLYPAAAYAYTF-WTYMMNA 275
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 276 RSKNVGWRLDYFLLSRALLPSLCDSKIRSAAL------GSDHCPITLYLA 319
>gi|291519655|emb|CBK74876.1| exodeoxyribonuclease III [Butyrivibrio fibrisolvens 16/4]
Length = 250
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P VS+ + +++ +GRVI EFE FY + Y
Sbjct: 50 YHAYWNYAEKKGYSGTAVFTKK--EPISVSYGI--GIEEHDHEGRVITLEFEDFYFITCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + K +I CGDLNV+HEEID+ +P
Sbjct: 106 TPNS--QNELKRLDYRMTWEDDFRAYLQKLNEKKGVILCGDLNVAHEEIDIKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER + +L G +D++R+ + ++ D WS
Sbjct: 158 ---------KTNRHNAGFTDEERAKMTELLSAG-FVDSFRYFYPDQ-TDIYSWWSYRFKA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYFIVSE++KDR+ ++ + GSDHCP+ L+
Sbjct: 207 REKNAGWRIDYFIVSEDIKDRMKDSKIHTDVM------GSDHCPIELDF 249
>gi|327313318|ref|YP_004328755.1| exodeoxyribonuclease III [Prevotella denticola F0289]
gi|326944960|gb|AEA20845.1| exodeoxyribonuclease III [Prevotella denticola F0289]
Length = 249
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y+ +W+ AD K Y+GTA+ K +P V++ + +++ +GRVI E + FYL+
Sbjct: 47 FPGYESYWNYADKKGYSGTAIFTKH--KPLNVTYGI--GIDEHDHEGRVITLEMDDFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++ R KW+ Q ++ + KP++ CGD+NV+H+EID+ +P
Sbjct: 103 TVYTPNS--QDGLRRLDYRMKWEDDFQAYLHKLDEKKPVVVCGDMNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G ID +R L+ E+ +S WS
Sbjct: 158 ------------KTNRKNAGFTDEEREKMTQLLGNG-FIDTFRTLYPEQ---VTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF++SE L+DR+ ++ GSDHCPV ++L
Sbjct: 202 RFRARERNTGWRIDYFLISERLRDRLEDAKIHTE------IMGSDHCPVEVDL 248
>gi|169823955|ref|YP_001691566.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|417925665|ref|ZP_12569084.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
gi|167830760|dbj|BAG07676.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|341591291|gb|EGS34499.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
Length = 253
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 30/225 (13%)
Query: 46 WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 105
+S + Y+GT + K +P VS+ + +++ +GRVI E+E F+L+N Y PN+
Sbjct: 57 YSANKAGYSGTLVYTK--VEPIGVSYGIGID--EHDTEGRVITCEYEDFFLVNVYTPNSK 112
Query: 106 WKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 164
K E + R W+ ++ + KP+I CGDLNV+H EID+ +P+
Sbjct: 113 QKLERLDY--RMVWEDEFHNYLNILRDRKPVIVCGDLNVAHNEIDLKNPQ---------- 160
Query: 165 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGK 224
N+ GFT ER + +L +G ID +R+ + +K + + WS + R
Sbjct: 161 --SNRR---SAGFTDEERNKMSLLLNDG-YIDTFRYFYPDKTDEYSY-WSYFAKARERNA 213
Query: 225 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
RIDYF+VS++LKD ++ ++ + GSDHCPV LE++
Sbjct: 214 GWRIDYFLVSDDLKDNLVDAKIH------QSIMGSDHCPVELEIN 252
>gi|420414387|ref|ZP_14913507.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
gi|393026721|gb|EJB27818.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
Length = 250
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 119/232 (51%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S+ LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSDPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|18310156|ref|NP_562090.1| exodeoxyribonuclease III [Clostridium perfringens str. 13]
gi|110802988|ref|YP_698514.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
gi|18144835|dbj|BAB80880.1| 3'-exo-deoxyribonuclease [Clostridium perfringens str. 13]
gi|110683489|gb|ABG86859.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
Length = 250
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 33/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P V + + ++ +GRVI EFE F+++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDFFMVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F +L G ID +R+ + D++ +S WS
Sbjct: 158 ---------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDLEGIYSWWSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 206 ARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------GSDHCPVKL 247
>gi|168209710|ref|ZP_02635335.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168217871|ref|ZP_02643496.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
gi|170712212|gb|EDT24394.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|182380111|gb|EDT77590.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
Length = 250
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 33/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P V + + ++ +GRVI EFE F+++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDFFMVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F +L G ID +R+ + D++ +S WS
Sbjct: 158 ---------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDIEGVYSWWSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 206 ARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------GSDHCPVKL 247
>gi|254166764|ref|ZP_04873618.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289596498|ref|YP_003483194.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197624374|gb|EDY36935.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289534285|gb|ADD08632.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 121/232 (52%), Gaps = 32/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ +Y +W+ A K YAGTAL K +P + F + + K++ +GRVI AE+E FYL+
Sbjct: 52 YPDYHKYWNPAKKKGYAGTALFTK--IEPLNIKFGIGED--KFDSEGRVITAEYEKFYLV 107
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + + ++DK I ++ + KP+I CGD NV+H+EID+++P
Sbjct: 108 NAYFPNS--QHGLTRLDFKIEFDKLIHSYLNELRKKKPVILCGDFNVAHKEIDLANP--- 162
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K++ GFT ER L++G ID +R KE W+
Sbjct: 163 ------------KQNVKNAGFTPQERAWMDEFLQDG-YIDTFRMFTKEGGHYTW--WTYR 207
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R R+DYF+VSEELKD++ + + L YGSDH P+++ L
Sbjct: 208 FKARERNIGWRVDYFVVSEELKDKVKSSWI------LSEVYGSDHAPIAMVL 253
>gi|357054575|ref|ZP_09115657.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
gi|355384175|gb|EHG31244.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
Length = 251
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K+ +P VS+ + +++ +GRVI AEF +Y++ Y
Sbjct: 51 YHQYWNYARKKGYSGTAMFTKE--EPMSVSYGIGME--EHDTEGRVITAEFPEYYVVTCY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ ++ R KW+ ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--QDGLARLDYRMKWEDDFLAYLKKLEKNKPVVFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F +L G +D +R+ + D++ +S WS
Sbjct: 159 ---------KTNRKNAGFTDEERGKFTDLLAAG-FVDTFRYFY--PDLEGIYSWWSYRFS 206
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LKDR+++ + + GSDHCPV L +
Sbjct: 207 ARAKNAGWRIDYFCVSESLKDRLVSASIHNTVM------GSDHCPVELVI 250
>gi|148225041|ref|NP_001085229.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
laevis]
gi|47937489|gb|AAH72056.1| MGC78928 protein [Xenopus laevis]
Length = 316
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 32/228 (14%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+W+ D K Y+G A+L K +P V++ + +++ +GRVI AEF++F+++ Y P
Sbjct: 117 YWACPDEKEGYSGVAMLCKD--KPLNVTYGI--GIEEHDKEGRVITAEFDSFFVIAAYIP 172
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N+ R++WD + ++ S KPLI CGDLNV+H+EID+ +P
Sbjct: 173 NSS--RGLVRLDYRQRWDVDFRAYLKGLDSKKPLILCGDLNVAHQEIDLKNP-------- 222
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 221
K + PGFT ER+ FG +L EG L D++R L+ +K F W+ +
Sbjct: 223 -------KTNKKTPGFTPQERQGFGELLAEGYL-DSFRELYPDKPSAYTF-WTYMMNARA 273
Query: 222 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R+DYF++S+ L+ + C+++ GSDHCP++L ++
Sbjct: 274 KNVGWRLDYFVLSKALRPALCDCKIRSK------VMGSDHCPITLLMA 315
>gi|385219782|ref|YP_005781257.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNVGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|293115606|ref|ZP_05792271.2| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
gi|292809044|gb|EFF68249.1| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
Length = 237
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 125/231 (54%), Gaps = 35/231 (15%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
+NY +W+ A+ K Y+GTA+ K+ +P V + + +++ +GRVI EFE FY++
Sbjct: 34 ENYYSYWNYAEKKGYSGTAVFSKE--KPLSVKYGI--GIDEHDHEGRVITLEFENFYMVT 89
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN+ + E + R KW+ + F+ KP++ GD+NV+H+EID+ +P
Sbjct: 90 VYTPNS--QRELTRLEYRMKWEDDFRNFLNDLRKTKPVVVTGDMNVAHKEIDLKNP---- 143
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
K + GFT ER++ +L G ID +R+ + D++ +SW +
Sbjct: 144 -----------KTNRKNAGFTDEERQKMTELLDSG-FIDTFRYFY--PDVEQKYSW-WSY 188
Query: 218 IGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ K R K RIDYF+ S+EL+DR+I+ E+ + GSDHCP+ L
Sbjct: 189 MFKSREKNAGWRIDYFLASKELEDRLISAEIHDKVL------GSDHCPIEL 233
>gi|442804155|ref|YP_007372304.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740005|gb|AGC67694.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 251
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 119/228 (52%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
YQ W Y+GTAL ++ +P V + +++ +GRV+ AE++ FYL+ Y
Sbjct: 51 YQYWNYAIRKGYSGTALFTRE--KPLSVVDGIGMN--EHDNEGRVLTAEYDKFYLVTVYT 106
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ + R KW+ +E++ + + KP+I CGDLNV+H EID+ +PE A +
Sbjct: 107 PNS--QRGLTRLDYRMKWEDDFREYLKRLDTTKPVIICGDLNVAHREIDIKNPE---ANR 161
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
N GFT ER++ +++ G D++R+L+ +K D WS +
Sbjct: 162 RNA------------GFTDEEREKMTMLIQSG-FTDSFRYLYPDK-TDAYTWWSYMFNAR 207
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VS+ ++D+I M YGSDHCPV LE+
Sbjct: 208 EKNIGWRIDYFLVSDRIRDKIRDAGMYSE------IYGSDHCPVFLEI 249
>gi|304439168|ref|ZP_07399086.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372300|gb|EFM25888.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 254
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 142/269 (52%), Gaps = 33/269 (12%)
Query: 3 AAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVK 61
AA K ++ +EL D +E KL + P Y ++W+ A+ K Y+GTA+ +
Sbjct: 16 AALKKGFMESFEELNPDIIGLQEIKLSEGQLDLEIP--GYHMYWNYAEKKGYSGTAVFTR 73
Query: 62 KCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK 121
+ +P VS+ + +++ +GRVI E+ +Y + Y PN+ + R +W++
Sbjct: 74 E--EPLSVSYGI--GIEEHDKEGRVITLEYPEYYFITCYTPNS--QRGLARLDYRMEWEE 127
Query: 122 RIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
E++ + KP++ CGDLNV+H EID+ +PE N+++ GF+
Sbjct: 128 AFLEYLNRLDEVKPVVLCGDLNVAHNEIDLKNPE------------SNRKN---AGFSDE 172
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
ER +F +L+ G D +R+L+ +K+ + + WS + R RIDYF+VS+ L+D+
Sbjct: 173 ERDKFTKLLEAG-YTDTFRYLYPDKEDEYSW-WSYFRQARDRNIGWRIDYFVVSKVLEDK 230
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELS 269
I+ + + GSDHCPVS+EL+
Sbjct: 231 IVEASIH------QNIMGSDHCPVSVELN 253
>gi|383862977|ref|XP_003706959.1| PREDICTED: recombination repair protein 1-like [Megachile
rotundata]
Length = 336
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 115/215 (53%), Gaps = 30/215 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y G AL K+ +P + + L+ + +++ +GR+I AE+ FY LN Y PN G K +
Sbjct: 147 YCGVALYTKQ--KPIDIQYGLKNS--EFDDEGRLITAEYPNFYFLNVYVPNAGQKLV--T 200
Query: 113 FQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+R +W++ + +V Q KP+I CGD+NV+H+EID+++P K +
Sbjct: 201 LPKRLQWNEAFKSYVKQLDEKKPVIICGDMNVAHQEIDLTNP---------------KTN 245
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
GFT ER+ L G +D +R L+ +K F WS + + R+DYF
Sbjct: 246 TKNAGFTKEEREGMTDFLAAG-FVDTFRSLYPDKTGAYTF-WSYFANARSKNIGWRLDYF 303
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+VSE++K+++ C+ + + YGSDHCP+ L
Sbjct: 304 LVSEKIKNKV--CD----NVIRDKIYGSDHCPIVL 332
>gi|288803025|ref|ZP_06408461.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
gi|288334542|gb|EFC72981.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
Length = 249
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y+ +W+ AD K Y+GTA+ K +P V++ + +++ +GRVI E + FYL+
Sbjct: 47 FLGYESYWNYADKKGYSGTAIFTKH--KPLSVTYGINID--EHDHEGRVITLEMDDFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++ R KW+ Q ++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 103 TVYTPNS--QDGLRRLDYRMKWEDDFQAYLHKLDEKKPVIVCGDMNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G ID +R L+ E+ +S WS
Sbjct: 158 ------------KTNRKNAGFTDEEREKMTQLLSNG-FIDTFRTLYPEQ---VTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF++SE LKDR+ ++ + GSDHCPV + L
Sbjct: 202 RFRAREKNTGWRIDYFLISERLKDRLEDAKIHTEIM------GSDHCPVEIIL 248
>gi|260495692|ref|ZP_05815815.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
gi|260196757|gb|EEW94281.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
Length = 253
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 125/239 (52%), Gaps = 43/239 (17%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVACGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ +SW
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW--- 199
Query: 217 PIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
YRG+ RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L+
Sbjct: 200 --WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLFLN 250
>gi|258648040|ref|ZP_05735509.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
gi|260851895|gb|EEX71764.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
Length = 250
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 117/233 (50%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y+ +W+ A+ K Y+GTA+ K K +S + +++ +GRVI E + FYL+
Sbjct: 47 FDGYESYWNYAEKKGYSGTAIFTKH----KPLSVQIGLGIDEHDHEGRVITLELDDFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++E R W++ Q + + KP+I CGD+NV+H+EID+ +P
Sbjct: 103 CVYTPNS--QDELRRLDYRMIWEEAFQAHLHKLDAHKPVIVCGDMNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G ID +R+ H D+ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEEREKMTQLLSNG-FIDTFRYFH--PDLTGAYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+VSE LK R++ + GSDHCPV L L
Sbjct: 203 RFRAREKNTGWRIDYFLVSERLKPRLVEANIHN------DIMGSDHCPVELIL 249
>gi|421709245|ref|ZP_16148605.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|421722501|ref|ZP_16161760.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
gi|407211802|gb|EKE81667.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|407226285|gb|EKE96051.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
Length = 250
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L +G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNDG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|260808574|ref|XP_002599082.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
gi|229284358|gb|EEN55094.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
Length = 272
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 123/233 (52%), Gaps = 42/233 (18%)
Query: 45 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 103
W+S + K YAGTALL K +P KV++ + +++ +GRVI AEF+ FY++ Y PN
Sbjct: 71 WYSPTEKKGYAGTALLSKT--KPIKVTYGI--GVDEHDDEGRVITAEFDDFYMVTAYVPN 126
Query: 104 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162
G R WD+ ++ + K P++ CGDLNV+H EID+ +P+
Sbjct: 127 AG--RGLVRLDYRGTWDEAFTAYLKKLDKKKPVVLCGDLNVAHNEIDLKNPK-------- 176
Query: 163 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 222
NK PGFT ER+ F +L EG D+YR L+ E + DC WS +G R
Sbjct: 177 ----GNKNK--TPGFTDKEREGFTTLLDEG-FKDSYRELYPE-ETDCYTFWS--YMGGAR 226
Query: 223 GKRM--RIDYFIVSE----ELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
K + R+DYF++S+ +L D +I E+ GSDHCP+ L L+
Sbjct: 227 AKNVGWRLDYFVLSDRLMPQLCDNVIRSEVM----------GSDHCPIVLLLA 269
>gi|282858966|ref|ZP_06268104.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|424898885|ref|ZP_18322433.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
gi|282588246|gb|EFB93413.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|388593595|gb|EIM33832.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
Length = 249
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 119/233 (51%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y+ +W+ AD K Y+GTA+ K K ++ + +++ +GRVI E + FYL+
Sbjct: 47 FPGYESYWNYADKKGYSGTAIFTKH----KPLTVTTGIGIDEHDHEGRVITLEMDDFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++E R +W+ Q ++ + KP+I CGD+NV+HEEID+ +P
Sbjct: 103 TVYTPNS--QDELKRLAYRMQWETDFQAYLHKLDEHKPVIVCGDMNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GF+ ER++ +L G D +R+L+ E+ +S WS
Sbjct: 158 ------------KTNHHNAGFSDEEREKMTILLNNG-FTDTFRYLYPEQ---VTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF++S L+DR+ ++ +GSDHCPV L L
Sbjct: 202 RFKAREKNTGWRIDYFLISNRLRDRLKDAKIHTE------IFGSDHCPVELTL 248
>gi|254302413|ref|ZP_04969771.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322605|gb|EDK87855.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 253
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 124/238 (52%), Gaps = 43/238 (18%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ +SW
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW--- 199
Query: 217 PIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
YRG+ RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 200 --WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHSQ-IE-----GSDHCPVVLFL 249
>gi|406837825|ref|ZP_11097419.1| exodeoxyribonuclease, partial [Lactobacillus vini DSM 20605]
Length = 181
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 105/193 (54%), Gaps = 26/193 (13%)
Query: 79 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 137
+++ +GRVI E+E FYL++ Y PN+ K + F R KW+ Q ++ + KP+I
Sbjct: 14 EFDHEGRVITLEYEQFYLVDCYTPNSQQKLKRLDF--RLKWELAFQTYLKKLDQTKPVIL 71
Query: 138 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 197
CGDLNV+H++ID+ + K + GF+ ER+ ++L +G ID+
Sbjct: 72 CGDLNVAHQKIDLKNW---------------KTNRHNAGFSDQERQAMTSLLDKG-FIDS 115
Query: 198 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 257
+RFLH E + WS + RIDYFIVS+ LK+RI+ ++ L Y
Sbjct: 116 FRFLHPETTGIYSW-WSYRFHARENNAGWRIDYFIVSDRLKNRILKADI------LTNIY 168
Query: 258 GSDHCPVSLELSE 270
GSDHCPV LEL E
Sbjct: 169 GSDHCPVELELKE 181
>gi|340751024|ref|ZP_08687853.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
gi|229421274|gb|EEO36321.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
Length = 251
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ +P V + + +++ +GRVI EFE FY++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKE--KPISVHYGI--GIEEHDKEGRVITLEFEKFYMITVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ +E+ R KW++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QEKLARLDYRMKWEEDFKNYLLELDKKKPVIVCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER++ +L+ G +D++R+ + K D WS
Sbjct: 158 ---------KTNRKNAGFSDEEREKMTKLLESG-FVDSFRYFYPNK-TDIYSWWSYRFSA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+VS+ +K+ M+G I E GSDHCPV L +
Sbjct: 207 RAKNAGWRIDYFLVSDRIKEN-----MKGAEIHTE-ILGSDHCPVLLNI 249
>gi|336401875|ref|ZP_08582631.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
gi|336160344|gb|EGN63396.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
Length = 253
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 125/239 (52%), Gaps = 43/239 (17%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ +SW
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSWWS- 201
Query: 217 PIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
YRG+ RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L+
Sbjct: 202 ----YRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLFLN 250
>gi|420429441|ref|ZP_14928474.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
gi|393044771|gb|EJB45763.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
Length = 250
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDIK--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEF 155
N Y PN+ ++ + R W+ ++F VL+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKVLELK-KPVIVCGDLNVAHNEIDLENP-- 157
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 -------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 203 MQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|160894365|ref|ZP_02075142.1| hypothetical protein CLOL250_01918 [Clostridium sp. L2-50]
gi|156864066|gb|EDO57497.1| exodeoxyribonuclease III [Clostridium sp. L2-50]
Length = 262
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P V++ + +++ +GRVI E++ FY++ Y
Sbjct: 61 YYQYWNYAEKKGYSGTAIFAKK--EPLSVAYGI--GIEEHDHEGRVITLEYDNFYMVTVY 116
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R KW+ +E++ Q KP++ CGD+NV+H EID+ +P
Sbjct: 117 TPNS--QNELARLDYRMKWEDDFREYLKQLEQTKPVVVCGDMNVAHTEIDLKNP------ 168
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER++F +L G +D +RF + D + +S WS
Sbjct: 169 ---------KTNRKNAGFTDEEREKFSTLLDSG-FVDTFRFFN--PDAEGIYSWWSYRFK 216
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S+ L+ R++ ++ + GSDHCPV L++
Sbjct: 217 AREKNAGWRIDYFLTSKVLESRLVDAKIHTEVL------GSDHCPVELDI 260
>gi|153812982|ref|ZP_01965650.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
gi|149830929|gb|EDM86019.1| exodeoxyribonuclease III [Ruminococcus obeum ATCC 29174]
Length = 252
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ + Y+GTA+ KK K +E+ ++ +GRVI EF+ FY + Y
Sbjct: 50 YHQYWNYANRRGYSGTAVFTKKEPISVKNGIGIEE----HDKEGRVITLEFKEFYFVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W++ ++L+ KP+I CGDLNV+HEEID+ +P
Sbjct: 106 TPNS--QSELRRLEYRMEWERDFLAYLLKLQESKPVICCGDLNVAHEEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER F +L+ G ID +R+ + +K+ + WS
Sbjct: 158 ---------KTNRKNAGFTDEERACFTKVLESG-FIDTFRYFYPDKEGIYSW-WSYRFKA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYFI S LK++ +QG I E GSDHCP+ L++
Sbjct: 207 REKNAGWRIDYFITSPSLKEK-----LQGAAIHTE-IMGSDHCPIELDI 249
>gi|336433570|ref|ZP_08613387.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
gi|336016006|gb|EGN45803.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
Length = 250
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y+ +W+ A K Y+GTA+ KK +P +++ + +++ +GRVI EFE FY +
Sbjct: 47 LEGYEQYWNYAVKKGYSGTAVFTKK--KPLNMTYGI--GIEEHDQEGRVITLEFEEFYFV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ + E R KW+ ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--QNELARLDYRMKWESDFLAYLKKLEEKKPVIFCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ + WS
Sbjct: 158 ------------KTNRKNAGFTDEERGKFTEMLDAG-FIDTFRYFYPDQEGIYSW-WSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LKDR+ ++ L GSDHCP+ L+L
Sbjct: 204 FSARAKNAGWRIDYFCVSECLKDRLADAKI------LTDVMGSDHCPIELDL 249
>gi|420491640|ref|ZP_14990218.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
gi|393104853|gb|EJC05407.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
Length = 236
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 33 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLV 88
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 89 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 143
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 144 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 189
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 190 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 235
>gi|289766441|ref|ZP_06525819.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
gi|289717996|gb|EFD82008.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
Length = 253
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 125/239 (52%), Gaps = 43/239 (17%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ +SW
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW--- 199
Query: 217 PIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
YRG+ RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L+
Sbjct: 200 --WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLFLN 250
>gi|420444585|ref|ZP_14943505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
gi|393058222|gb|EJB59115.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
Length = 250
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKNILGSDHCPVGLEL 249
>gi|420431269|ref|ZP_14930290.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
gi|393044260|gb|EJB45254.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
Length = 250
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARNKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|422932904|ref|ZP_16965829.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339891952|gb|EGQ80860.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 253
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 125/239 (52%), Gaps = 43/239 (17%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ +SW
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW--- 199
Query: 217 PIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
YRG+ RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L+
Sbjct: 200 --WSYRGRARENNTGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLFLN 250
>gi|291276452|ref|YP_003516224.1| exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 123/235 (52%), Gaps = 35/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ A+ K Y+G +L K+ +P V + + ++ +GRVI AE+ FYL+
Sbjct: 47 FDGYHGYWNSAEKKGYSGVVVLSKQ--EPLCVEYDM--GIEHHDKEGRVICAEYPDFYLI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ K E + R +W+ F+ KPLI CGDLNV+H+EID+ +P
Sbjct: 103 NVYTPNS--KRELERLEYRMQWEDDFLNFLKNLERKKPLIICGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER++ +L+ G ID +R+ + D++ +SW +
Sbjct: 158 ------------KTNRRNAGFTDEEREKMTTLLENG-FIDTFRYFY--PDLEGAYSW-WS 201
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G+ R RIDYF+ SE L+ R+I ++ + GSDHCPV L +S
Sbjct: 202 YMGRARQNNTGWRIDYFLCSEILQKRLIEAKIYSEIL------GSDHCPVGLVIS 250
>gi|420410840|ref|ZP_14909976.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
gi|393026053|gb|EJB27153.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
Length = 250
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|410024766|ref|YP_006894019.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|410502530|ref|YP_006937057.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
gi|410683049|ref|YP_006935451.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|419417169|ref|ZP_13957646.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
gi|384373631|gb|EIE29102.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|409894690|gb|AFV42748.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|409896423|gb|AFV44345.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|409898081|gb|AFV45935.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
Length = 250
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420478325|ref|ZP_14976978.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
gi|393097099|gb|EJB97693.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
Length = 250
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420457745|ref|ZP_14956558.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
gi|393072264|gb|EJB73043.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
Length = 250
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420520352|ref|ZP_15018787.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|425433141|ref|ZP_18813679.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
gi|393124748|gb|EJC25215.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|410714293|gb|EKQ71771.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
Length = 250
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|19703399|ref|NP_602961.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328758|ref|ZP_06871272.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19713467|gb|AAL94260.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154093|gb|EFG94897.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 253
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 124/238 (52%), Gaps = 43/238 (18%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ +SW
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW--- 199
Query: 217 PIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
YRG+ RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 200 --WSYRGRARENNAGWRIDYFVVSKGLEKSLVDAEIHSQ-IE-----GSDHCPVVLFL 249
>gi|89897437|ref|YP_520924.1| hypothetical protein DSY4691 [Desulfitobacterium hafniense Y51]
gi|219670588|ref|YP_002461023.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|89336885|dbj|BAE86480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540848|gb|ACL22587.1| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2]
Length = 250
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 117/235 (49%), Gaps = 33/235 (14%)
Query: 38 PFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
PF+ Y +W+ A K Y+GTA+ KK +P VS+ + + +++ +GRVI EF+TF
Sbjct: 44 PFQLEGYHAYWNFAQKKGYSGTAVFAKK--EPLSVSYGIGQE--EHDQEGRVITLEFDTF 99
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
YL+ Y PN+ + + R W+ ++ KP+I CGDLNV+H EID+ +P
Sbjct: 100 YLVTVYTPNS--QRDLARLDYRMIWEAEFLGYLKNLEKSKPVILCGDLNVAHTEIDLKNP 157
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
K + GFT ER +F +LK G ID +R + +K + W
Sbjct: 158 ---------------KTNRKNAGFTDEERAKFSELLKNG-FIDTFRHFNPDKK-EAYTWW 200
Query: 214 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
S + RIDYF VSE LK+ + + + GSDHCPV LE+
Sbjct: 201 SYMFNARANNAGWRIDYFCVSESLKNEL------KDAMIYDQIMGSDHCPVGLEI 249
>gi|420473317|ref|ZP_14971995.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|420525338|ref|ZP_15023743.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
gi|393090445|gb|EJB91078.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|393130144|gb|EJC30574.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
Length = 250
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|359406465|ref|ZP_09199155.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
gi|357555725|gb|EHJ37349.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
Length = 249
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 117/233 (50%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y +W+ A+ K Y+GTA+ + P V++ + +++ +GRVI E E FYL+
Sbjct: 47 FEGYTSYWNYAEKKGYSGTAIYTRH--TPLSVTYGIGID--EHDHEGRVITLEMEDFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++ R KW+ +++ K P+I CGDLNV+HEEID+ +P
Sbjct: 103 TCYTPNS--QDGLRRLDYRMKWEDDFLQYIKGLDAKKPVIVCGDLNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT E + A L EG ID +R LH + D +S WS
Sbjct: 158 ------------KTNRKNAGFTDEECAKMTAFLGEG-FIDTFRTLHPD---DPTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYFI SE L++RI + + +GSDHCPV L L
Sbjct: 202 RFKAREKNAGWRIDYFITSERLRERITSAAIHNE------VFGSDHCPVELIL 248
>gi|420456020|ref|ZP_14954844.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
gi|393071140|gb|EJB71927.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
Length = 250
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARNKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|331092367|ref|ZP_08341193.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
gi|330401391|gb|EGG80977.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
Length = 250
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A+ K Y+GTA+ K+ +P V++ + +++ +GR+I EF FY
Sbjct: 47 LEGYHQYWNYAEKKGYSGTAVFTKE--EPLSVTYGM--GIEEHDKEGRLITLEFPEFYFA 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ + E R +W+ ++ + KP+I+CGDLNV+H EID+ +P
Sbjct: 103 TVYTPNS--QNELARLDYRMQWETDFLAYMKKLEEKKPVIFCGDLNVAHREIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER +FG +L G ID +R+ + DM+ +S WS
Sbjct: 158 ------------KTNRKNAGFTDEERGKFGELLDAG-FIDTFRYFY--PDMEGIYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE L++R+ ++ L +GSDHCPV L+L
Sbjct: 203 RFRAREKNAGWRIDYFCVSESLRERLADAKI------LTYIFGSDHCPVELDL 249
>gi|429741842|ref|ZP_19275492.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
gi|429158090|gb|EKY00657.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
Length = 250
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 132/270 (48%), Gaps = 33/270 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A K P+ Q L D +E K+ + + P +Y +W+ A+ K Y+GTA+
Sbjct: 11 LRAVFGKGFPEIIQGLDADFVCLQETKMQAGQLEADLP--SYHTYWNYAEKKGYSGTAIY 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P VS+ + ++ +GRVI E+ FYL+ Y PN+ +++ R W
Sbjct: 69 TRH--EPLSVSYGIGID--HHDTEGRVITLEYTDFYLVTVYVPNS--QDDLRRLGYRMTW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + ++++ K P+I CGDLNV+H+EID+ +P K + GFT
Sbjct: 123 EDDFRAYLVELDKKKPVIVCGDLNVAHQEIDLKNP---------------KSNRRNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER +F +L G ID +R+ H ++ D WS + R RIDYF+ S+ L
Sbjct: 168 DEERGKFQELLDAG-FIDTFRYFHPDQ-RDIYSWWSYRFKARERNSGWRIDYFVTSQRLA 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
++ + ++ +GSDHCPV L L
Sbjct: 226 PQLASAKIHTE------IFGSDHCPVELVL 249
>gi|390952993|ref|YP_006416751.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
gi|390418979|gb|AFL79736.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
Length = 254
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 128/253 (50%), Gaps = 38/253 (15%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 77
+TKA EE + ALS +Y +++ A+ K Y+G A+L KK +P V++ +
Sbjct: 35 ETKAQNEE---VEEALSE--MTDYHQYYNSAERKGYSGVAILSKK--EPISVTYDM--GI 85
Query: 78 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 136
+++ +GRVI AE++TFYL+N Y PN+G K E + R+ WD ++ K +I
Sbjct: 86 AEHDTEGRVICAEYDTFYLVNVYVPNSGQKLERLDY--RKGWDTDFHNYLKNIEKTKSVI 143
Query: 137 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 196
CGDLNV+H+ ID+ N NK G+T E L EG +D
Sbjct: 144 LCGDLNVAHQAIDLK----------NDKANYNK----TAGYTQIEIDGMDNFLNEG-FVD 188
Query: 197 AYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 255
+R H E ++ WS + R RIDYF+VS L +++ E+ L
Sbjct: 189 TFRHFHPET---VAYTYWSYRFKSRERNTGWRIDYFLVSNPLVEKVNKVEI------LSE 239
Query: 256 FYGSDHCPVSLEL 268
++GSDHCP+ LE+
Sbjct: 240 YFGSDHCPIKLEI 252
>gi|329769257|ref|ZP_08260674.1| exodeoxyribonuclease [Gemella sanguinis M325]
gi|328839251|gb|EGF88834.1| exodeoxyribonuclease [Gemella sanguinis M325]
Length = 254
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 123/236 (52%), Gaps = 33/236 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +++ A+ K Y+GTA+ K ++P V++ + +++ +GRVI E++ F+ +
Sbjct: 47 FDGYYSYFNYAERKGYSGTAIYTK--YKPLNVTYGI--GIEEHDTEGRVITLEYDNFFFI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+G E + R W+ ++++L + K +I CGDLNV+H EID+ +P
Sbjct: 103 TVYTPNSG--SELKRLEYRMSWEDDFKDYLLTLNKDKGVIVCGDLNVAHTEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++F +L G ID +R+ + D+ +S WS
Sbjct: 158 ------------KTNVKNAGFTPEEREKFTKLLDAG-FIDTFRYFN--PDLTGAYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
+ RIDYF+VS++LK +++ ++ +GSDHCPV L L E
Sbjct: 203 RFNARKNNSGWRIDYFLVSKDLKKYLVSAKIHND------IFGSDHCPVELVLDET 252
>gi|409045646|gb|EKM55126.1| hypothetical protein PHACADRAFT_120160 [Phanerochaete carnosa
HHB-10118-sp]
Length = 347
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 34/232 (14%)
Query: 45 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 103
+WS++ K Y+GTA+L K +P V ++L GR++ EFE Y++ TY N
Sbjct: 134 YWSISAKKTYSGTAILCK--VKPLSVDYTLPGHPDPEHVRGRILTLEFENVYVVGTYVVN 191
Query: 104 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162
G + +R W+K ++ K P+IW GDLNV+ E+D+++P
Sbjct: 192 AG--TGLKTLPEKRTWNKHFHAYIHSLDAKKPVIWTGDLNVAPTELDLANP--------- 240
Query: 163 GYVPPNKEDWGQ-PGFTIAERKRFGAIL---KEG--RLIDAYRFLHKEKDMDCGFSWSGN 216
K +W + PG+T E F +L +EG ++ID +R LH + FS+ N
Sbjct: 241 ------KPNWNKTPGYTEDETSAFKRVLGPEEEGQKKMIDVWRHLHPKLRHYTYFSYRQN 294
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ +G R+D+F+VSE L +++ CE++ E + SDHCPV+LE+
Sbjct: 295 --CRSKGVGWRLDHFVVSERLLEKVDMCEIRS-----EIYGASDHCPVTLEI 339
>gi|420420653|ref|ZP_14919737.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
gi|393035452|gb|EJB36496.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
Length = 250
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARNKDIGWRIDYFLCSNPLKTRL------KDALIYKDTLGSDHCPVGLEL 249
>gi|420417863|ref|ZP_14916958.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
gi|393031044|gb|EJB32117.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
Length = 250
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|423137872|ref|ZP_17125515.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371959030|gb|EHO76727.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 253
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 124/238 (52%), Gaps = 43/238 (18%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVACGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ +SW
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW--- 199
Query: 217 PIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
YRG+ RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 200 --WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLFL 249
>gi|300726843|ref|ZP_07060273.1| exodeoxyribonuclease III [Prevotella bryantii B14]
gi|299775956|gb|EFI72536.1| exodeoxyribonuclease III [Prevotella bryantii B14]
Length = 250
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 120/233 (51%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y+ +W+ AD K Y+GTA+ K +P V++ ++ +E GRVI E++ F+L+
Sbjct: 47 FDGYESFWNYADKKGYSGTAIYAKT--KPLNVTYGIDIDDHNHE--GRVITLEYDNFFLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ + E R W+K Q ++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 103 TVYTPNS--QNELKRLNYRMIWEKDFQTYLHKLDKRKPIIVCGDMNVAHQEIDIKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G D +RF + E+ +S WS
Sbjct: 158 ------------KTNHKSAGFTDEEREKMTQLLSNG-FTDTFRFKYPEQ---ITYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+VS+ +K++++ ++ GSDHCPV L +
Sbjct: 202 RFRAREKNAGWRIDYFLVSDRIKEKVLDAKIH------TDIMGSDHCPVELTI 248
>gi|327278210|ref|XP_003223855.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Anolis carolinensis]
Length = 306
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 138/254 (54%), Gaps = 36/254 (14%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKT 76
+TK + ++ +R L+ P K +W+ ++ K Y+G ALL K +P +V + + +
Sbjct: 85 ETKCAEKQLPADIRDLAEYPHK----YWACSEDKEGYSGVALLSK--VKPLEVKYGIGEE 138
Query: 77 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 135
+++ +GRVI AEF +++L+ +Y PN G + R+ WD + ++ + KPL
Sbjct: 139 --EHDKEGRVITAEFPSYFLVTSYVPNAG--RGLVRLEYRQSWDVAFRSYLKGLAARKPL 194
Query: 136 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 195
I CGDLNV+HEEID+ +P+ NK++ GFT ER F +L+EG +
Sbjct: 195 ILCGDLNVAHEEIDLKNPK------------GNKKN---AGFTPEERAGFTKLLEEG-FV 238
Query: 196 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 255
D +R L+ + F W+ + + R+DYF+VS++L++ I +++ +
Sbjct: 239 DTFRHLYPDTAYAYTF-WTYMMNARSKNVGWRLDYFVVSKDLQESICDSKIRSTAL---- 293
Query: 256 FYGSDHCPVSLELS 269
GSDHCP++L ++
Sbjct: 294 --GSDHCPITLYIA 305
>gi|188585577|ref|YP_001917122.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350264|gb|ACB84534.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 251
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K QP V + + + K++ +GRVI EF +YL+N Y
Sbjct: 50 YFQYWNYAEKKGYSGTAIFTK--IQPLTVQYGIGEA--KHDKEGRVITLEFCDYYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ + +++ S KP+I CGDLNV+H+EID+ +P+
Sbjct: 106 TPNS--QRELARLDYRLQWEDAFKNYLVNLDSEKPVIVCGDLNVAHKEIDLKNPK----- 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
NK + GFT ER + +L G ID +R+ + D + ++ WS
Sbjct: 159 -------NNKRN---AGFTEEERNKLTELLNAG-FIDTFRYFY--PDTEGAYTWWSYITK 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYF+ S++L + + E+ GSDHCPV+L+L+
Sbjct: 206 ARERNAGWRIDYFLASQKLDNWLTDAEIHAD------IMGSDHCPVALKLA 250
>gi|432942682|ref|XP_004083031.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Oryzias latipes]
Length = 298
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 134/255 (52%), Gaps = 36/255 (14%)
Query: 18 DDTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEK 75
D+TK + ++ + ++ P K +W+++D K Y+G A+L K +P KV++ + K
Sbjct: 76 DETKCAEKDLPAEITSMPEYPHK----YWAVSDDKEGYSGVAMLSKT--EPLKVTYGIGK 129
Query: 76 TALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKP 134
+++ +GRVI AEF TF+L+ Y PN R+ WD Q ++ + KP
Sbjct: 130 E--EHDKEGRVITAEFPTFFLVTAYVPNA--SRGLVRLDYRKTWDVDFQAYLTELDVQKP 185
Query: 135 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 194
L+ CGDLNV+H+EID+ +P+ NK++ GFT ER+ F +L G
Sbjct: 186 LVLCGDLNVAHQEIDLKNPK------------GNKKN---AGFTPEEREGFSQLLAAG-F 229
Query: 195 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 254
+D++R L+ E+ F W+ + + R+DYF++S L + +++ +
Sbjct: 230 VDSFRELYPEQANAYTF-WTYMMNSRAKNVGWRLDYFLLSSSLVPGLCDSKIRNKAM--- 285
Query: 255 GFYGSDHCPVSLELS 269
GSDHCP++L L+
Sbjct: 286 ---GSDHCPITLHLA 297
>gi|327278208|ref|XP_003223854.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Anolis carolinensis]
Length = 314
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 138/254 (54%), Gaps = 36/254 (14%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKT 76
+TK + ++ +R L+ P K +W+ ++ K Y+G ALL K +P +V + + +
Sbjct: 93 ETKCAEKQLPADIRDLAEYPHK----YWACSEDKEGYSGVALLSK--VKPLEVKYGIGEE 146
Query: 77 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 135
+++ +GRVI AEF +++L+ +Y PN G + R+ WD + ++ + KPL
Sbjct: 147 --EHDKEGRVITAEFPSYFLVTSYVPNAG--RGLVRLEYRQSWDVAFRSYLKGLAARKPL 202
Query: 136 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 195
I CGDLNV+HEEID+ +P+ NK++ GFT ER F +L+EG +
Sbjct: 203 ILCGDLNVAHEEIDLKNPK------------GNKKN---AGFTPEERAGFTKLLEEG-FV 246
Query: 196 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 255
D +R L+ + F W+ + + R+DYF+VS++L++ I +++ +
Sbjct: 247 DTFRHLYPDTAYAYTF-WTYMMNARSKNVGWRLDYFVVSKDLQESICDSKIRSTAL---- 301
Query: 256 FYGSDHCPVSLELS 269
GSDHCP++L ++
Sbjct: 302 --GSDHCPITLYIA 313
>gi|332654136|ref|ZP_08419880.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
gi|332517222|gb|EGJ46827.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
Length = 252
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 33/227 (14%)
Query: 45 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 103
+W+ A+ K Y+GTA+ QP V + + K +++ +GR+I E+E FYL+ Y PN
Sbjct: 54 YWNSAEKKGYSGTAVFTPH--QPLAVRYGMGKE--EHDHEGRLITLEYEKFYLVCCYTPN 109
Query: 104 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162
+ + E R +W+ ++ ++++ KP+I+CGDLNV+H EID+ +P+ ++N
Sbjct: 110 S--QSELKRLDYRMEWEDDLRAYLMELDKVKPVIYCGDLNVAHREIDLKNPK---TNRMN 164
Query: 163 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKY 221
GFT ER++ +L G D +RFL+ D++ +S WS +
Sbjct: 165 A------------GFTDQEREKMTTLLSSG-FTDTFRFLY--PDLEGVYSWWSYRFQARK 209
Query: 222 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFIVS+ L++ I E+ L GSDHCPV LEL
Sbjct: 210 KNAGWRIDYFIVSDRLQNAIKRAEI------LTQVEGSDHCPVLLEL 250
>gi|392960130|ref|ZP_10325603.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
gi|392455642|gb|EIW32426.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
Length = 250
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A K Y+GTA+ + P V++ L +++ +GR+I EFE F+L+N Y
Sbjct: 50 YEKYWNSAVKKGYSGTAVFTR--ITPLSVTYGLNIE--EHDQEGRIITLEFEDFFLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K E R +W+ + ++ KP+I CGD+NV+H+EID+ +P
Sbjct: 106 TPNS--KRELLRLDYRMRWEDEFRTYLTALDQSKPVIICGDINVAHQEIDIKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER + A+L+ G D +R ++ +K +D WS
Sbjct: 158 ---------KTNRRNAGFTDEERDKMTALLEAG-FTDTFRHIYPDK-IDAYTWWSYMMNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VS L+D I + + GSDHCP+ LE+
Sbjct: 207 RARNIGWRIDYFLVSNTLRDAIKEATIYPDVM------GSDHCPIGLEI 249
>gi|167759302|ref|ZP_02431429.1| hypothetical protein CLOSCI_01649 [Clostridium scindens ATCC 35704]
gi|336422208|ref|ZP_08602360.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
gi|167663176|gb|EDS07306.1| exodeoxyribonuclease III [Clostridium scindens ATCC 35704]
gi|336009118|gb|EGN39116.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
Length = 250
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 123/238 (51%), Gaps = 36/238 (15%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L +P + Y W+ A K Y+GTA+ K+ +P VS+ + +++ +GRVI EFE
Sbjct: 45 LETPGYHQY---WNYAKKKGYSGTAIFTKQ--EPISVSYGI--GIEEHDQEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
+Y + Y PN+ + E R +W+ ++ + KP+I+CGDLNV+H+EID+
Sbjct: 98 DYYFITVYTPNS--QNELARLPYRMQWEDDFLAYLKKLEEAKPVIFCGDLNVAHKEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GFT ER +F +++ G ID +R+ + D +
Sbjct: 156 NP---------------KTNRKNAGFTDEERAKFTSLVDAG-FIDTFRYFY--PDAQGIY 197
Query: 212 S-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
S WS + + RIDYF VSE L++R++ ++ L GSDHCP+ LE+
Sbjct: 198 SWWSYRFSARAKNAGWRIDYFCVSESLEERLVDAKI------LTDVMGSDHCPIVLEM 249
>gi|365903535|ref|ZP_09441358.1| exodeoxyribonuclease III Xth [Lactobacillus malefermentans KCTC
3548]
Length = 254
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 110/228 (48%), Gaps = 31/228 (13%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
NY +++ A+ K Y+GT + K +P V + + L +E GR I E+++F+L+
Sbjct: 49 NYHQYYNYAEQKGYSGTGIFTKH--EPLSVHYGINVPELDHE--GRTITLEYKSFFLVTC 104
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN+G E R +WD Q ++L+ + KP+I CGDLNV+H EID+ P
Sbjct: 105 YTPNSG--HELKRLDFRMQWDPAFQSYLLKLNKRKPVIICGDLNVAHSEIDLKSP----- 157
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
+ GFT ER+ F +L G ID YR+ + +K + WS
Sbjct: 158 ----------TSNHHNAGFTDEERENFTTLLDSG-FIDTYRYFYPDKKEKYSW-WSYRTK 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+ S+ L RI + L GSDHCPV L
Sbjct: 206 AREVNSGWRIDYFLASKSLAPRISDANI------LTNVMGSDHCPVVL 247
>gi|420459312|ref|ZP_14958114.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
gi|393072002|gb|EJB72782.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
Length = 250
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKNILGSDHCPVGLEL 249
>gi|420531938|ref|ZP_15030309.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
gi|393135788|gb|EJC36183.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
Length = 250
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|363893051|ref|ZP_09320191.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402837946|ref|ZP_10886461.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361961782|gb|EHL14961.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402274377|gb|EJU23561.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 251
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ A+ K Y+GTA+ K +P V + L +++ +GR+I E+E +Y+
Sbjct: 47 FDGYYEYWNYANKKGYSGTAIYTKH--KPIDVHYGL--GIEEHDMEGRLITLEYENYYIA 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN + E R+KW++ +E+ + KP+I CGD+NV+H+EID+ +P
Sbjct: 103 TVYTPNA--QPELARLAYRQKWEEDFREYFKKLDEKKPVIICGDMNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F +L G ID +R+ + +K + + WS
Sbjct: 158 ------------KNNRKNPGFSDEEREKFTLLLNAG-FIDTFRYFYPDKTDEYSW-WSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF VS+ LK+++ + + + GSDHCPVS+E+
Sbjct: 204 FNARKNNAGWRIDYFCVSDRLKEKLKSASIH------QDVMGSDHCPVSIEI 249
>gi|15227354|ref|NP_181677.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
gi|8488963|sp|P45951.2|ARP_ARATH RecName: Full=Apurinic endonuclease-redox protein; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|3241944|gb|AAC23731.1| DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis
thaliana]
gi|330254890|gb|AEC09984.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 536
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 35/229 (15%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALK-YEPDGRVILAEFETFYLLNTYA 101
+WS + SK Y+GTA++ + +P V + T L ++ +GR++ AEF++FYL+NTY
Sbjct: 336 FWSCSVSKLGYSGTAIISR--IKPLSVRYG---TGLSGHDTEGRIVTAEFDSFYLINTYV 390
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+G + S+ R +WD+ + + + KP++ GDLN +HEEID+ +P
Sbjct: 391 PNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNP------- 442
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIG 219
NK GFTI ER+ FGA L + +D +R K+ G++ W G
Sbjct: 443 -----AGNKRS---AGFTIEERQSFGANLLDKGFVDTFR---KQHPGVVGYTYWGYRHGG 491
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K R+DYF+VS+ IA + I L GSDHCP+ L L
Sbjct: 492 RKTNKGWRLDYFLVSQS-----IAANVHDSYI-LPDINGSDHCPIGLIL 534
>gi|421893824|ref|ZP_16324317.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
gi|385273309|emb|CCG89689.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
Length = 251
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 31/230 (13%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
+Y +W+ A+ K Y+GTA+ KK +P V + L K++ +GRVI EFE FY++
Sbjct: 49 HYYQYWNYAEKKGYSGTAIFTKK--KPLTVRYGL--GIEKHDQEGRVITLEFEKFYVITC 104
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN+ + + + R WD + ++ Q + KP+I+CGDLNV+H+EID+ +
Sbjct: 105 YTPNS--QPKLKRLEYRMAWDDAFRAYIDQLNQHKPVIFCGDLNVAHQEIDLKN------ 156
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
+K + GFT ER +F +L G D YR+ + K+ + WS
Sbjct: 157 ---------DKTNHKNAGFTDEERNKFTQLLNSG-FTDTYRYFYPSKEGVYSW-WSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+ S+ L ++ ++ +GSDHCPV L+L
Sbjct: 206 ARANNAGWRIDYFVSSKVLDQKLTDAQIHTE------IFGSDHCPVELDL 249
>gi|420499520|ref|ZP_14998076.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
gi|393151722|gb|EJC52025.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
Length = 250
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420476560|ref|ZP_14975223.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
gi|393094985|gb|EJB95590.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
Length = 250
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420441204|ref|ZP_14940154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
gi|393054345|gb|EJB55274.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
Length = 250
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420407902|ref|ZP_14907061.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
gi|393025387|gb|EJB26493.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
Length = 250
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|404371536|ref|ZP_10976840.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKE--KPLSVSYGL--GIEEHDKEGRVITLEFENFYMVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K E R W+ ++++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--KNELARLDYRMVWEDAFRDYLKVLDEKKPVIVCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER +F +L G +D +R+ + + ++ WS
Sbjct: 158 ---------KTNLRNAGFTEEERSKFTELLNAG-FVDTFRYFYPD-EVGAYSWWSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYF+VS +KD++ ++ + GSDHCPV L+++
Sbjct: 207 RAKNAGWRIDYFLVSNSVKDKLEDAKIHSEVL------GSDHCPVELKIN 250
>gi|420439551|ref|ZP_14938514.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
gi|393053870|gb|EJB54812.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
Length = 250
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|336420229|ref|ZP_08600467.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
gi|336161634|gb|EGN64634.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
Length = 253
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 124/238 (52%), Gaps = 43/238 (18%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ +SW
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW--- 199
Query: 217 PIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
YRG+ RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 200 --WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLFL 249
>gi|421526611|ref|ZP_15973218.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
gi|402257168|gb|EJU07643.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
Length = 253
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 116/233 (49%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKE--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELQRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER +F +L G D +R H D++ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLAAG-FTDTFR--HFYPDLEHAYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VS L ++ E+ GSDHCPV L L
Sbjct: 203 RANARKNNTGWRIDYFVVSNALDKYLVDAEIHAQT------EGSDHCPVVLFL 249
>gi|387015594|gb|AFJ49916.1| DNA-(apurinic or apyrimidinic site) lyase-like [Crotalus
adamanteus]
Length = 316
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 138/254 (54%), Gaps = 36/254 (14%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKT 76
+TK + ++ +R L+ P K +W+ ++ K Y+G ALL K +P V++ + +
Sbjct: 95 ETKCAEKQLPADIRDLAEYPHK----FWACSNDKEGYSGVALLSKN--KPLDVTYGIGEE 148
Query: 77 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 135
+++ +GRVI AEF +++L+ TY PN G + R++WD+ + ++ + KPL
Sbjct: 149 --EHDKEGRVITAEFSSYFLVTTYVPNAG--RGLVRLEYRQRWDEAFRSYLKGLAARKPL 204
Query: 136 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 195
I CGDLNV+H+EID+ +P+ NK++ GFT ER F +L+ G +
Sbjct: 205 ILCGDLNVAHQEIDLKNPK------------GNKKN---AGFTPEERAGFTQLLEAG-FV 248
Query: 196 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 255
D +R L+ F W+ + + R+DYF+VS+EL++ + +++ +
Sbjct: 249 DTFRHLYPNTPYAYTF-WTYMMNARAKNVGWRLDYFVVSKELQEGLCDSKIRSTAL---- 303
Query: 256 FYGSDHCPVSLELS 269
GSDHCP++L ++
Sbjct: 304 --GSDHCPITLYVA 315
>gi|420504982|ref|ZP_15003506.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
gi|393154128|gb|EJC54413.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
Length = 250
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|385216679|ref|YP_005776636.1| exodeoxyribonuclease [Helicobacter pylori F32]
gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|293376523|ref|ZP_06622751.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
gi|292644749|gb|EFF62831.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
Length = 251
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
YQ W Y+GTA+ K +P +V++ L +++ +GRVI E+ FYL+ Y
Sbjct: 51 YQYWNYAVKKGYSGTAIFTKH--EPLQVTYGL--NIAEHDQEGRVITLEYNDFYLVTVYT 106
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ + E R W++ + +++ KP+I CGDLNV+H++ID+ +P
Sbjct: 107 PNS--QNELARLDYRLTWEEAFRNYLIGLDVLKPVIVCGDLNVAHQQIDLKNP------- 157
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GFTI ER +L G ID +R+ + K+ +C WS +
Sbjct: 158 --------KTNTKNAGFTIEERNEMTKLLNSG-FIDTFRYFYPTKE-NCYSWWSYRAGAR 207
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFI S+ L+ R+ + + GSDHCPV L+L
Sbjct: 208 AKNVGWRIDYFITSKALESRLEDARIYPDVL------GSDHCPVGLQL 249
>gi|168214660|ref|ZP_02640285.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|422874042|ref|ZP_16920527.1| exodeoxyribonuclease III [Clostridium perfringens F262]
gi|170713849|gb|EDT26031.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|380305037|gb|EIA17320.1| exodeoxyribonuclease III [Clostridium perfringens F262]
Length = 250
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 33/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P V + + ++ +GRVI EFE F+++ Y
Sbjct: 50 YFQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDFFMVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F +L G ID +R+ + D++ +S WS
Sbjct: 158 ---------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDLEGVYSWWSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 206 ARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------GSDHCPVKL 247
>gi|410456343|ref|ZP_11310205.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
gi|409928167|gb|EKN65287.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
Length = 250
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 135/259 (52%), Gaps = 37/259 (14%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE+ D +E KL S Y +W+ A K Y+GTA+ K +P V +
Sbjct: 24 QEVDADIFCVQETKL--QEGQISLDLDGYHQYWNYAIKKGYSGTAVFTK--IEPISVRYG 79
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 132
+ + E +GR++ EF+ F+L+N Y PN+ + + R +W+ RI E + +
Sbjct: 80 VGTD--ESEEEGRILTLEFDDFFLVNIYTPNS--QRDLARIGYRLEWESRILEHLKELDK 135
Query: 133 -KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP+I CGDLNV+H+EID+ + +K + G GFT ER + ++L
Sbjct: 136 LKPVILCGDLNVAHQEIDLRN---------------SKSNVGNSGFTDEERGKMTSLLSA 180
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGH 249
G +D+YR H D + ++W + + K R + + RIDYFIVSE+L++ + + ++ +
Sbjct: 181 G-FVDSYR--HFYPDQEGAYTW-WSYMMKVRERNIGWRIDYFIVSEKLRENLKSADIHCN 236
Query: 250 GIELEGFYGSDHCPVSLEL 268
+ GSDHCP+ LE+
Sbjct: 237 VM------GSDHCPIVLEV 249
>gi|420491838|ref|ZP_14990414.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|420525605|ref|ZP_15024008.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
gi|393108533|gb|EJC09067.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|393133626|gb|EJC34042.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
Length = 250
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420452902|ref|ZP_14951743.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
gi|393066715|gb|EJB67534.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
Length = 250
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIE--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420461013|ref|ZP_14959808.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
gi|393074587|gb|EJB75346.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
Length = 250
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|345881123|ref|ZP_08832651.1| exodeoxyribonuclease [Prevotella oulorum F0390]
gi|343920840|gb|EGV31568.1| exodeoxyribonuclease [Prevotella oulorum F0390]
Length = 250
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F YQ +W+ A+ K Y+GTA+ K+ P VS+ + +++ +GRVI E+E+F+L+
Sbjct: 47 FPGYQSFWNYAEKKGYSGTAIYAKQA--PLAVSYGIGID--EHDHEGRVITLEYESFFLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++E R +W+ Q ++ + KP+I CGD+NV+HEEID+ +P
Sbjct: 103 TVYTPNS--QDELRRLDYRMQWEDDFQAYLHRLDEQKPVIVCGDMNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER + +L G ID +R L+ E+ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEERAKMTQLLGHG-FIDTFRTLYPEQQT---YSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF++SE L+ ++ ++ GSDHCPV ++L
Sbjct: 202 RFRAREKNTGWRIDYFLISERLRPQLTDAKIH------TDIMGSDHCPVEVDL 248
>gi|420447816|ref|ZP_14946702.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|420476276|ref|ZP_14974943.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
gi|393061877|gb|EJB62737.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|393090183|gb|EJB90817.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
Length = 250
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420415952|ref|ZP_14915065.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
gi|393031857|gb|EJB32928.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
Length = 250
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|472869|emb|CAA54234.1| ARP protein [Arabidopsis thaliana]
Length = 527
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 35/229 (15%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALK-YEPDGRVILAEFETFYLLNTYA 101
+WS + SK Y+GTA++ + +P V + T L ++ +GR++ AEF++FYL+NTY
Sbjct: 327 FWSCSVSKLGYSGTAIISR--IKPLSVRYG---TGLSGHDTEGRIVTAEFDSFYLINTYV 381
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+G + S+ R +WD+ + + + KP++ GDLN +HEEID+ +P
Sbjct: 382 PNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNP------- 433
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIG 219
NK GFTI ER+ FGA L + +D +R K+ G++ W G
Sbjct: 434 -----AGNKR---SAGFTIEERQSFGANLLDKGFVDTFR---KQHPGVVGYTYWGYRHGG 482
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K R+DYF+VS+ IA + I L GSDHCP+ L L
Sbjct: 483 RKTNKGWRLDYFLVSQS-----IAANVHDSYI-LPDINGSDHCPIGLIL 525
>gi|420421296|ref|ZP_14920374.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
gi|393037814|gb|EJB38848.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
Length = 250
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|347525140|ref|YP_004831888.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
gi|345284099|gb|AEN77952.1| Exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
Length = 254
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 116/230 (50%), Gaps = 29/230 (12%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P+ VS+ ++ + +E GRVI E+ +FYL+ Y
Sbjct: 50 YHQYWNYAERKGYSGTAIFTKH--EPQSVSYGIQNSEFDHE--GRVITLEYASFYLVCCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
+PN+ K + F R D + KP+I CGDLNV+HEEID+ +P
Sbjct: 106 SPNSQPKLKRLDF-RMGFEDAFLNYLNALKEKKPVIMCGDLNVAHEEIDLKNP------- 157
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GF+ ER +L+ G L D +RF H ++ + WS +
Sbjct: 158 --------KTNHKNAGFSNEERSCMTRLLENGYL-DTFRFFHPDETGIYSW-WSYRFNAR 207
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
RIDYFIVSE LKD + E+ L GSDHCPV LE ++
Sbjct: 208 KNNAGWRIDYFIVSESLKDSLENAEI------LTDIMGSDHCPVLLETAD 251
>gi|420500328|ref|ZP_14998874.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
gi|393152095|gb|EJC52396.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
Length = 250
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|312870577|ref|ZP_07730692.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
gi|417885012|ref|ZP_12529173.1| exodeoxyribonuclease III [Lactobacillus oris F0423]
gi|311093892|gb|EFQ52221.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
gi|341596968|gb|EGS39554.1| exodeoxyribonuclease III [Lactobacillus oris F0423]
Length = 275
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 111/240 (46%), Gaps = 40/240 (16%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F YQI W A YAGT L + +QP V++ + +GR+I EF F
Sbjct: 64 FPGYQIAWRSSVEPARKGYAGTMYLYRDQYQPT-VTYPQIGAPEPMDSEGRIITLEFHDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 150
+L Y PN+G N +R R +WD ++++ Q KP+I GD NV+HEEID+
Sbjct: 123 FLTEVYTPNSG-----NGLKRLADREQWDDCYRDYLHQLDEQKPVIASGDFNVAHEEIDL 177
Query: 151 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 210
+HP + GFT ER FG +L G D++RFLH E+
Sbjct: 178 AHP---------------ANNHHSAGFTDEERSHFGQLLAAG-FTDSFRFLHPEE--AGA 219
Query: 211 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+SW + K RIDY++VS L DR+ + M G DH P+ LE+
Sbjct: 220 YSWWAQRVLTSKQNNSGWRIDYWLVSNRLADRVSSSSMIDSGER------RDHTPIMLEI 273
>gi|168205412|ref|ZP_02631417.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
gi|170663003|gb|EDT15686.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
Length = 250
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 33/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P V + + ++ +GRVI EFE F+++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDFFMVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F +L G ID +R+ + D++ +S WS
Sbjct: 158 ---------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDLEGIYSWWSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 206 ARKNNAGWRIDYFLVSNNLEDRIKEAFIDTEIL------GSDHCPVKL 247
>gi|420411264|ref|ZP_14910396.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
gi|393030053|gb|EJB31132.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
Length = 250
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKTLELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420535388|ref|ZP_15033733.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|420539073|ref|ZP_15037392.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
gi|393139673|gb|EJC40047.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|393146758|gb|EJC47083.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
Length = 236
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 33 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGID--IKEHDKEGRVVTCEFESFYLV 88
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 89 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 143
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 144 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 189
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 190 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 235
>gi|420488041|ref|ZP_14986644.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|420521916|ref|ZP_15020345.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101431|gb|EJC02003.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|393126486|gb|EJC26937.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
Length = 250
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLNVSYGIDME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|386756397|ref|YP_006229614.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
gi|384562655|gb|AFI03121.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
Length = 250
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420433080|ref|ZP_14932089.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|420508405|ref|ZP_15006911.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|420510180|ref|ZP_15008676.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|420532271|ref|ZP_15030634.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|420535643|ref|ZP_15033985.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|420537346|ref|ZP_15035676.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|420540833|ref|ZP_15039141.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|420543901|ref|ZP_15042190.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
gi|393051948|gb|EJB52898.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|393115197|gb|EJC15708.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|393116707|gb|EJC17212.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|393139902|gb|EJC40275.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|393143291|gb|EJC43635.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|393144901|gb|EJC45232.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|393147453|gb|EJC47777.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|393158898|gb|EJC59154.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
Length = 250
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|16081140|ref|NP_391968.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312070|ref|ZP_03593917.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316395|ref|ZP_03598200.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221321308|ref|ZP_03602602.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325591|ref|ZP_03606885.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402778258|ref|YP_006632202.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|452912770|ref|ZP_21961398.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
gi|585113|sp|P37454.1|EXOA_BACSU RecName: Full=Exodeoxyribonuclease
gi|467372|dbj|BAA05218.1| 3'-exo-deoxyribonuclease [Bacillus subtilis]
gi|2636635|emb|CAB16125.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|402483437|gb|AFQ59946.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|407962942|dbj|BAM56182.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7613]
gi|407966954|dbj|BAM60193.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7003]
gi|452117798|gb|EME08192.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
Length = 252
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 33/233 (14%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
++Y ++W+ A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++
Sbjct: 49 EDYHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGI--GVEEHDQEGRVITLEFENVFVMT 104
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN+ E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 105 VYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNP---- 158
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
K + GF+ ER+ F L+ G +D++R H D++ +SW
Sbjct: 159 -----------KANRNNAGFSDQEREAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYR 204
Query: 218 IG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
G + R RIDYF+VSE LK++I + + GSDHCPV L ++
Sbjct: 205 AGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------GSDHCPVELIIN 251
>gi|363893404|ref|ZP_09320502.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
gi|361963708|gb|EHL16774.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
Length = 251
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 121/232 (52%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ A+ K Y+GTA+ K +P V + L +++ +GR+I E+E +Y+
Sbjct: 47 FDGYYEYWNYANKKGYSGTAIYTKH--KPIDVHYGL--GIEEHDMEGRLITLEYENYYIA 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN + E R+KW+ +E+ + KP+I CGD+NV+H+EID+ +P
Sbjct: 103 TVYTPNA--QPELARLAYRQKWEDDFREYFKKLDEKKPVIICGDMNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F L G ID +R+++ +K + + WS
Sbjct: 158 ------------KNNRKNPGFSDEEREKFTIFLNAG-FIDTFRYIYPDKTDEYSW-WSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF VS+ LK+++ + + + GSDHCPVS+E+
Sbjct: 204 FNARKNNAGWRIDYFCVSDRLKEKLKSASIH------QDVMGSDHCPVSIEI 249
>gi|420424301|ref|ZP_14923369.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
gi|393039589|gb|EJB40616.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
Length = 250
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|384177745|ref|YP_005559130.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349596969|gb|AEP93156.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 252
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y ++W+ A K Y+GTA+ K+ +P V + + +++ +GRVI EFE Y++ Y
Sbjct: 51 YHVYWNYAVKKGYSGTAVFSKQ--EPLHVIYGI--GVEEHDQEGRVITLEFENVYVMTVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 107 TPNSRRGLERIDY--RMQWEEALLSYILELEKKKPVILCGDLNVAHQEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER+ F L+ G +D++R H D++ +SW G
Sbjct: 159 ---------KANRNNAGFSDQEREAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYRAG 206
Query: 220 -KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYF+VSE LK++I + + GSDHCPV L ++
Sbjct: 207 ARDRNIGWRIDYFVVSESLKEQIEDASISADVM------GSDHCPVELIIN 251
>gi|163814023|ref|ZP_02205416.1| hypothetical protein COPEUT_00176 [Coprococcus eutactus ATCC 27759]
gi|158450717|gb|EDP27712.1| exodeoxyribonuclease III [Coprococcus eutactus ATCC 27759]
Length = 257
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ AD K Y+GTA+ K+ K +S + +++ +GRVI E+E FY++ Y
Sbjct: 56 YYQYWNYADKKGYSGTAIFTKE----KSLSETKGIGIDEHDHEGRVITLEYENFYMVTVY 111
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R KW+ + ++ + KP+I CGD+NV+H EID+ +P
Sbjct: 112 TPNS--QNELARLDYRMKWEDDFRAYLKKLEENKPVIVCGDMNVAHNEIDLKNP------ 163
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++ +L +G ID +R+ + +++ + WS
Sbjct: 164 ---------KTNRKNAGFTDEEREKMTVLLDDG-FIDTFRYFYPDQENIYSW-WSYRFKA 212
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ SE LKD++I ++ GSDHCPV L++
Sbjct: 213 REKNAGWRIDYFLTSESLKDKLIDAKIH------TDIMGSDHCPVELDI 255
>gi|420451071|ref|ZP_14949925.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
gi|393065003|gb|EJB65833.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
Length = 250
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKTLELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|384899763|ref|YP_005775143.1| exodeoxyribonuclease [Helicobacter pylori F30]
gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 118/233 (50%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIWCGDLNVSHEEIDVSHPEF 155
N Y PN+ ++ + R W+ ++F VL+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKVLELK-KPVIVCGDLNVAHNEIDLENP-- 157
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 -------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 203 MQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420425904|ref|ZP_14924964.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
gi|393040802|gb|EJB41820.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
Length = 250
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GR+I EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRIITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420432830|ref|ZP_14931843.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
gi|393046920|gb|EJB47899.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
Length = 236
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 33 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIE--EHDKEGRVVTCEFESFYLV 88
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 89 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 143
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 144 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 189
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 190 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 235
>gi|15612480|ref|NP_224133.1| exodeoxyribonuclease III [Helicobacter pylori J99]
gi|420464550|ref|ZP_14963321.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
gi|4156036|gb|AAD06994.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
gi|393077779|gb|EJB78526.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
Length = 250
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420467774|ref|ZP_14966523.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
gi|393083034|gb|EJB83748.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
Length = 250
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420481469|ref|ZP_14980108.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|420510358|ref|ZP_15008848.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
gi|393094477|gb|EJB95086.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|393122099|gb|EJC22576.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
Length = 250
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like
[Bombus terrestris]
Length = 357
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 117/218 (53%), Gaps = 30/218 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y G AL K+ +P + + L+ ++++ +GR+I AE+ FYL+N Y PN G K +
Sbjct: 168 YCGVALYTKE--KPIDIKYGLDN--VEFDSEGRLITAEYSNFYLINVYVPNAGQKLI--T 221
Query: 113 FQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+R KW++ + +V KP+I CGD+NV+H++ID+ +P+ NK++
Sbjct: 222 LPKRLKWNEAFKAYVKNLDEKKPVIICGDMNVAHQKIDLKNPD------------TNKKN 269
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
GFT ER L G +D +R L+ K+ F WS + + R+DYF
Sbjct: 270 ---AGFTQEERSGMTDFLDAG-FVDTFRALYPNKEGAYTF-WSYFANARSKNIGWRLDYF 324
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+VSE++KD + C+ + + YGSDHCP+ L ++
Sbjct: 325 LVSEQIKDNV--CD----NVIRDKVYGSDHCPIVLYIN 356
>gi|420513485|ref|ZP_15011963.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
gi|393155902|gb|EJC56173.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDKEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|224543695|ref|ZP_03684234.1| hypothetical protein CATMIT_02905 [Catenibacterium mitsuokai DSM
15897]
gi|224523348|gb|EEF92453.1| exodeoxyribonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 248
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 108/216 (50%), Gaps = 30/216 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GTA+L + +P VS+ + +Y+ +GRVI EFE +Y + Y PN+ K+E
Sbjct: 62 YSGTAILTR--MKPLSVSYGI--GIEEYDQEGRVITLEFEDYYFVPCYTPNS--KKELAR 115
Query: 113 FQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 172
R +W+ + L KP+I CGDLNV+H EID+ +P +
Sbjct: 116 IDYRMEWEDAFLAY-LDALNKPVILCGDLNVAHHEIDLKNP---------------SSNH 159
Query: 173 GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFI 232
GF+ ER + +L G ID +R+L+ +K D WS + R RIDYFI
Sbjct: 160 HNAGFSDQERSKMTELLSHG-YIDTFRYLYPDKK-DAYTWWSYMFKSRERNAGWRIDYFI 217
Query: 233 VSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
VSE LK+RI + GSDHCP+ LE+
Sbjct: 218 VSESLKERI------KESLIYSDILGSDHCPIGLEM 247
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
gi|197297326|gb|EDY31888.1| exodeoxyribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 118/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P VS+ L +++ +GRVI EFE FY + Y
Sbjct: 50 YHQYWNYAVKKGYSGTAVFTKK--EPLSVSYGL--GIEEHDQEGRVITCEFEDFYFVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R KW+ + ++ + KP+I GDLNV+H+EID+ +P
Sbjct: 106 TPNS--QSELARLDYRMKWEDDFRAYLKKLEKKKPVIVTGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER +F +L G ID +R+ + +++ + WS
Sbjct: 158 ---------KTNRKNAGFTDEERGKFTELLDAG-FIDTFRYFYPDQEGIYSW-WSYRFSA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LKDR+ ++ L GSDHCP+ L+L
Sbjct: 207 RAKNAGWRIDYFCVSECLKDRLADAKI------LTEVMGSDHCPIELDL 249
>gi|383750553|ref|YP_005425656.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
gi|380875299|gb|AFF21080.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 119/233 (51%), Gaps = 31/233 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+NY +W+ A K Y+G L K + LE+ ++ +GRVI E+E FYL+
Sbjct: 47 FENYHAFWNSAQKKGYSGVLTLSKSAPLDVRYGLGLEE----HDTEGRVITCEYEYFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + R +W+ +EF+ S K ++ CGDLNV+H EID+++P+
Sbjct: 103 NVYTPNS--QRGLLRLPYRLQWESVFREFLQNLASHKEVLICGDLNVAHTEIDLTNPQ-- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
N+ + GF+ ER FG +L+ G LID YR + +K + WS
Sbjct: 159 ----------SNRYN---AGFSDPERNAFGQLLQLG-LIDTYRHFYPDK-TEVYTWWSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYF+ S+ L+ ++ + H + GSDHCPV LE+S
Sbjct: 204 NQSRARNIGWRIDYFLASQGLRSQLKDACIYAHIL------GSDHCPVGLEMS 250
>gi|385218180|ref|YP_005779656.1| exodeoxyribonuclease [Helicobacter pylori F16]
gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + ++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHNKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|363889335|ref|ZP_09316698.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
gi|361966758|gb|EHL19645.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
Length = 251
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ A+ K Y+GTA+ K +P V + L +++ +GR+I E+E +Y+
Sbjct: 47 FDGYYEYWNYANKKGYSGTAIYTKH--KPIDVHYGL--GIEEHDMEGRLITLEYENYYIA 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN + E R+KW+ +E+ + KP+I CGD+NV+H+EID+ +P
Sbjct: 103 TVYTPNA--QPELARLAYRQKWEDDFREYFKKLDEKKPVIICGDMNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + PGF+ ER++F L G ID +R+ + +K + + WS
Sbjct: 158 ------------KNNRKNPGFSDEEREKFTMFLNSG-FIDTFRYFYPDKTDEYSW-WSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF VS+ LK+++ + + + GSDHCPVS+E+
Sbjct: 204 FNARKNNAGWRIDYFCVSDRLKEKLKSASIH------QDVMGSDHCPVSIEI 249
>gi|425790062|ref|YP_007017982.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
gi|425628377|gb|AFX91845.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NVEEHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYVPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420528800|ref|ZP_15027190.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|420528961|ref|ZP_15027349.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
gi|393132399|gb|EJC32820.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|393138075|gb|EJC38457.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens]
Length = 334
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 118/218 (54%), Gaps = 30/218 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y G AL K+ +P + + L+ ++++ +GR+I AE+ FYL+N Y PN G K +
Sbjct: 145 YCGVALYTKE--KPIDIKYGLDN--VEFDSEGRLITAEYSNFYLVNVYVPNAGQKLI--T 198
Query: 113 FQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+R KW++ + +V KP+I CGD+NV+H++ID+ +P+ NK++
Sbjct: 199 LPKRLKWNEAFKAYVKNLDEKKPVIICGDMNVAHQKIDLKNPD------------TNKKN 246
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
GFT ER L G +D +R L+ +K+ F WS + + R+DYF
Sbjct: 247 ---AGFTQEERSGMTDFLDAG-FVDTFRALYPDKEGAYTF-WSYFANARSKNIGWRLDYF 301
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+VSE++KD + C+ + + YGSDHCP+ L ++
Sbjct: 302 LVSEQIKDNV--CD----NVIRDEVYGSDHCPIVLYIN 333
>gi|420462757|ref|ZP_14961538.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
gi|393078158|gb|EJB78902.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|355673738|ref|ZP_09059213.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
gi|354814451|gb|EHE99051.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
Length = 251
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ ++ +P V++ + +++ +GRVI AEF +Y++ Y
Sbjct: 51 YHQYWNYARKKGYSGTAVFTRE--EPISVAYGIGME--EHDTEGRVITAEFPEYYVVTCY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ ++ R KW+ ++ KP+I+CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--QDGLARLDYRMKWEDDFLSYLKGLEKNKPVIFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F +L G ID +R+ + DM+ +S WS
Sbjct: 159 ---------KTNRKNAGFTDEERGKFTDLLSAG-FIDTFRYFY--PDMEGIYSWWSYRFS 206
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYF VSE LKDR+++ + GSDHCPV L ++
Sbjct: 207 ARAKNAGWRIDYFCVSESLKDRLVSASIH------TDIMGSDHCPVELVVN 251
>gi|308185296|ref|YP_003929429.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|420454456|ref|ZP_14953289.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
gi|308061216|gb|ADO03112.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|393067777|gb|EJB68584.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIE--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|421720757|ref|ZP_16160034.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
gi|407225541|gb|EKE95311.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420489725|ref|ZP_14988317.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|420523659|ref|ZP_15022077.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
gi|393105146|gb|EJC05697.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|393126008|gb|EJC26460.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ W +D YAG ++VK +P V + ++ + +++ +GR I E+ETF+++N Y
Sbjct: 1045 YETLWCCSDKDGYAGVGIMVKD--KPLNVIYGID--SKEHDTEGRCITVEYETFFVVNVY 1100
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
P+ G + +R W+++ ++F+ S KP+I CGD+NV+H+EID+++P
Sbjct: 1101 VPHAG--RNLVTLPKRLDWNEQFEKFIKNLDSQKPVIICGDMNVAHKEIDLANP------ 1152
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF++ ER A L G +D YR L+ EK+ F W
Sbjct: 1153 ---------KTNTNSAGFSVEERDGMTAFLGNG-YVDIYRHLYPEKEKAYTF-WIYMRNA 1201
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R+DYF+VS+ D + C+ H GSDHCP+SL +
Sbjct: 1202 RPNNVGWRLDYFLVSQRFVDNV--CDNIIHS----DVMGSDHCPLSLHI 1244
>gi|420483017|ref|ZP_14981651.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
gi|393097621|gb|EJB98214.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|423076274|ref|ZP_17064987.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
gi|361852634|gb|EHL04857.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 117/235 (49%), Gaps = 33/235 (14%)
Query: 38 PFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
PF+ Y +W+ A K Y+GTA+ K+ +P VS+ + + +++ +GRVI EF+TF
Sbjct: 44 PFQLEGYHAYWNFAQKKGYSGTAVFAKQ--EPLSVSYGIGQE--EHDQEGRVITLEFDTF 99
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
YL+ Y PN+ + + R W+ ++ KP+I CGDLNV+H EID+ +P
Sbjct: 100 YLVTVYTPNS--QRDLARLDYRMIWEAEFLGYLKNLEKSKPVILCGDLNVAHTEIDLKNP 157
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
K + GFT ER +F +LK G ID +R + +K + W
Sbjct: 158 ---------------KTNRKNAGFTDEERAKFSELLKNG-FIDTFRHFNPDKK-EAYTWW 200
Query: 214 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
S + RIDYF VSE LK+ + + + GSDHCPV LE+
Sbjct: 201 SYMFNARANNAGWRIDYFCVSESLKNEL------KDAMIYDQIMGSDHCPVGLEI 249
>gi|420466271|ref|ZP_14965031.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
gi|393078846|gb|EJB79584.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|254780031|ref|YP_003058138.1| exodeoxyribonuclease III [Helicobacter pylori B38]
gi|254001944|emb|CAX30201.1| Putative exodeoxyribonuclease [Helicobacter pylori B38]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|419419212|ref|ZP_13959471.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384372800|gb|EIE28363.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L +G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNDG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|385222881|ref|YP_005772014.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420154891|ref|ZP_14661764.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
gi|394760027|gb|EJF42663.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
Length = 252
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 119/235 (50%), Gaps = 41/235 (17%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P V + + + +GR I EFE+FYL+N Y
Sbjct: 50 YLQYWNSAEKKGYSGTAVFTKK--EPLSVCYDIRHP--DHTGEGRAITLEFESFYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ +E+V Q KP+I CGDLNV+H+EID+ +
Sbjct: 106 TPNS--QRELVRLPYRMEWENAFREYVTQLDEKKPVIICGDLNVAHQEIDLKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI- 218
K + G GF+ ER + +L G +D++R L+ D+ ++W
Sbjct: 158 ---------KSNIGNAGFSYEERGKLTELLASG-FLDSFRELY--PDLTGAYTWWSYMFK 205
Query: 219 GKYRGKRMRIDYFIVSEELK----DRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF++SE L+ D +I E+Q GSDHCPV L L+
Sbjct: 206 ARQNNAGWRIDYFLISERLREKLSDSLIYSEVQ----------GSDHCPVGLILT 250
>gi|145529087|ref|XP_001450332.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417943|emb|CAK82935.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 123/232 (53%), Gaps = 32/232 (13%)
Query: 40 KNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K+Y ++ + SK Y+G A+ K K +S + K++ +GR + AEFE FYL+
Sbjct: 141 KHYFLYLNFCKSKAGYSGVAIASK----VKPLSVKCDIGVDKHDQEGRTLTAEFEQFYLV 196
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
+ Y PN+G K E + R ++WD Q ++ KP I CGDLNV+H EID+S+P
Sbjct: 197 SCYVPNSGQKLERLDY-RTKEWDIDFQNYLEGLRKKKPTILCGDLNVAHHEIDLSNP--- 252
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
NK+ GFT+ ER +F L++G +D++R LH ++ FS N
Sbjct: 253 ---------AGNKK---TAGFTLQERDQFSNYLQKG-WVDSFRHLHPKEVKYSFFSARSN 299
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ +G R+DYFI+++E D I ++ + +E GSDH P+ E+
Sbjct: 300 SRSQNKG--WRLDYFIINKEASDAITVSDIN---LTVE---GSDHVPIECEV 343
>gi|412987602|emb|CCO20437.1| predicted protein [Bathycoccus prasinos]
Length = 411
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 132/276 (47%), Gaps = 38/276 (13%)
Query: 21 KASREEKLILMRALSSPPF-KNYQIWWSLADSKYAGTALLV--KKCFQPKKVS--FSLEK 75
K+ RE + L S F + Y +++ K AG LV ++ +P +V F+ E
Sbjct: 101 KSYRESANGIESLLDSNGFLRKYARYYNCFHQKSAGVLTLVNAEEVEKPNRVRLRFTNED 160
Query: 76 TALKYEPDGRVILAEF------ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 129
+ P GRVI +F +L+TY+PNNG E S +RRR+WD + + + Q
Sbjct: 161 KGEEEWP-GRVIECQFGDDEDANRLVVLSTYSPNNGSGAE--SRERRRRWDDSVLKRLTQ 217
Query: 130 C--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 187
G IW GDLNV+ + IDV + A P D+G GFT E++RF
Sbjct: 218 LRKEGVDFIWNGDLNVAPDGIDVKFDDIKAMENKKASDP----DYGVAGFTRNEQRRFQN 273
Query: 188 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR-------MRIDYFIVSEELKDR 240
IL+ DAYR ++ E+ ++W + K GK MR+D +VS+ LK +
Sbjct: 274 ILEASEASDAYRVVNGERR---SYTWRAYTVNKVGGKVFNTVNPGMRLDLMVVSKNLKSK 330
Query: 241 IIAC--------EMQGHGIELEGFYGSDHCPVSLEL 268
I C + + + +E F+GSDHC V LEL
Sbjct: 331 IQRCYHATDDLPDTEAMKMPMEKFFGSDHCAVHLEL 366
>gi|421715896|ref|ZP_16155208.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
gi|407221794|gb|EKE91597.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420449595|ref|ZP_14948464.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
gi|393062395|gb|EJB63250.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420484933|ref|ZP_14983551.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|420515427|ref|ZP_15013890.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517129|ref|ZP_15015584.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
gi|393103068|gb|EJC03631.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|393123726|gb|EJC24194.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|393124943|gb|EJC25409.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|164688495|ref|ZP_02212523.1| hypothetical protein CLOBAR_02140 [Clostridium bartlettii DSM
16795]
gi|164602908|gb|EDQ96373.1| exodeoxyribonuclease III [Clostridium bartlettii DSM 16795]
Length = 252
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 31/231 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ +P V++ ++ +++ +GRVI EF+ FY + Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQ--EPISVNYGIQIE--EHDKEGRVITLEFDNFYFVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R KW+ ++++L+ S K +I CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QSELKRLDYRMKWEDDFRKYLLKLNSKKGVIVCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L+ G ID YR + +K+ + WS
Sbjct: 158 ---------KTNRKNAGFTDQEREKFTELLESG-FIDTYRHFNPDKEGIYSW-WSYRFKA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ + RIDYF S++L++ +++ ++ + GSDHCP+ L + +
Sbjct: 207 REKNAGWRIDYFCASKDLENNLVSADIHTQIL------GSDHCPIELVVKD 251
>gi|373454216|ref|ZP_09546089.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
gi|371936051|gb|EHO63787.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
Length = 254
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
+Q W S Y+GTA+ K+ +P V++ L +++ +GR+I A+F + YLL Y
Sbjct: 54 HQYWNSAVKKGYSGTAIFTKE--EPLSVTYGLGIE--EHDQEGRLITADFGSHYLLCCYT 109
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ + R W+K ++E++ + + KP+I CGDLNV+HE+ID+++P
Sbjct: 110 PNS--QRGLARLSYRMTWEKAMKEYMTKLAAEKPVILCGDLNVAHEDIDIANP------- 160
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
+ GFT ER R +L G D++R LH ++ D WS +
Sbjct: 161 --------ASNHKNAGFTDEERGRMTDLLAAG-FTDSFRHLHPDEK-DAYSWWSYFAKAR 210
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R RIDYF+VS KD I +G I + GSDHCPV L+L
Sbjct: 211 ERNVGWRIDYFLVSSVWKDHI-----KGASIHSD-ILGSDHCPVELDL 252
>gi|420494787|ref|ZP_14993354.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
gi|393109942|gb|EJC10470.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIG--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420442874|ref|ZP_14941805.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
gi|393056819|gb|EJB57729.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|421720502|ref|ZP_16159782.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
gi|407219094|gb|EKE88911.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|363896773|ref|ZP_09323322.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
gi|361960338|gb|EHL13587.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
Length = 251
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 138/271 (50%), Gaps = 36/271 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ A K+ ++ ++L D +E KL + L P + +Q W Y+GTA+
Sbjct: 12 LRAVMGKNFMEDFRKLDADIFCLQETKLQAGQIELDLPGY--FQYWNYAVKKGYSGTAIF 69
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K+ +P VS+ + +++ +GRVI AEF+ FYL+ Y PN+ + E R ++
Sbjct: 70 TKE--EPLSVSYGI--GVEEHDQEGRVITAEFKDFYLITVYVPNS--QGELKRLPYRMEF 123
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ ++L K P+++CGDLNV+HEEID+ +P+ + GF+
Sbjct: 124 EDAFLNYILNLEKKKPVVYCGDLNVAHEEIDLKNPD---------------TNHLSAGFS 168
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER +F +L G L D++R+ + EK+ +S WS + R RIDYF+VS++L
Sbjct: 169 DEERAKFSRVLDNGYL-DSFRYFYPEKE---EYSWWSYRTKARERNVGWRIDYFVVSKQL 224
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ ++ + + + GSDHCPV L L
Sbjct: 225 EKKLHSASIHTEVM------GSDHCPVELIL 249
>gi|420396107|ref|ZP_14895329.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|420402996|ref|ZP_14902182.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
gi|393011086|gb|EJB12275.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|393020162|gb|EJB21301.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|384895292|ref|YP_005769281.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420397741|ref|ZP_14896957.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
gi|393011286|gb|EJB12474.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
Length = 250
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420397962|ref|ZP_14897175.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
gi|393014636|gb|EJB15807.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
Length = 250
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease III [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|331702430|ref|YP_004399389.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
gi|329129773|gb|AEB74326.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
Length = 256
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 130/269 (48%), Gaps = 33/269 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ AA D + Q+L D +E K+ + P YQ +++ A+ K Y+GTA+
Sbjct: 11 LRAAVKHDFAETFQQLDADFFCIQETKMQEGQLELDLP--GYQQYFNYAERKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K P V++ + +E GR I E+ FYL+ +Y PN+G + F R W
Sbjct: 69 TKHA--PMHVTYGINSDEFDHE--GRAITLEYPDFYLVTSYVPNSGAGLKRLDF--RMGW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+K +++ + K P+I CGDLNV+H+EI++ +P+ + GFT
Sbjct: 123 NKAFYQYLTELDAKKPVILCGDLNVAHKEIELKNPQ---------------SNHHNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER+ F +LK G +D +R + ++ D WS + R RIDYF+ S L
Sbjct: 168 DEERQDFTKLLKAG-FMDTFRHFYPDQ-TDIYSWWSYRFHSRDRNAGWRIDYFVASNRLA 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLE 267
D+I ++ L +GSDHCPV L+
Sbjct: 226 DQIEDSKI------LTDVFGSDHCPVELD 248
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRISYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKERAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420496454|ref|ZP_14995017.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
gi|393110512|gb|EJC11037.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
Length = 250
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|387908710|ref|YP_006339044.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
gi|387573645|gb|AFJ82353.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
Length = 250
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|373461425|ref|ZP_09553165.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
gi|371952383|gb|EHO70222.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
Length = 251
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 130/271 (47%), Gaps = 36/271 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A SKD + + L D +E K+ F Y +W+ AD K Y+GTA+
Sbjct: 12 LRACVSKDFAQTFETLNADFFCLQETKM--QAGQLDLQFPGYTSFWNYADKKGYSGTAIY 69
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+K +P V++ + +++ +GRVI E+E FYL+N Y PN ++ R W
Sbjct: 70 ARK--EPLSVAYGIGID--EHDHEGRVITLEYEDFYLVNVYTPNA--QDGLRRLDYRMTW 123
Query: 120 DKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ Q ++ + KP+I CGD+NV+HEEID+ +P K + GFT
Sbjct: 124 EDDFQAYLHRLDARKPVIVCGDMNVAHEEIDLKNP---------------KTNHRNAGFT 168
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER + +L G D +R L+ E +S WS + + RIDYF++S+ L
Sbjct: 169 DEERAKMTQLLGNG-FTDTFRNLYPEA---IKYSWWSYRFRAREKNTGWRIDYFLISDRL 224
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R+ + +GSDHCPV ++L
Sbjct: 225 RPRLKEAAIHNE------IFGSDHCPVEVDL 249
>gi|321313648|ref|YP_004205935.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430756766|ref|YP_007207426.1| exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
gi|320019922|gb|ADV94908.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430021286|gb|AGA21892.1| Exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 252
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 33/233 (14%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
+ Y ++W+ A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++
Sbjct: 49 EGYHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGI--GVEEHDQEGRVITLEFENVFVMT 104
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN+ E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 105 VYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNP---- 158
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
K + GF+ ER+ F L+ G +D++R H D++ +SW
Sbjct: 159 -----------KANRNNAGFSDQEREAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYR 204
Query: 218 IG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
G + R RIDYF+VSE LK++I + + GSDHCPV L ++
Sbjct: 205 AGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------GSDHCPVELIIN 251
>gi|134045625|ref|YP_001097111.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
gi|132663250|gb|ABO34896.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
Length = 249
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 119/231 (51%), Gaps = 40/231 (17%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P +V + ++ + ++ +GRVI +F+ +YL+N Y
Sbjct: 50 YFQYWNYAERKGYSGTAVFTK--IKPNEVIYGIKNS--EHNGEGRVITLKFDEYYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + + R+KWD+ +V K P+I+CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QRGLTRLKYRQKWDQDFLNYVKTLENKKPVIFCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ERK F I+ G +D +R +KE D +S+ N
Sbjct: 158 ---------KTNVKNAGFTPEERKGFDNIVNSG-FLDTFREFNKEPDNYSWWSYRFN--A 205
Query: 220 KYRGKRMRIDYFIVSE----ELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ R RIDYF +SE LKD I E+ GSDHCPV +
Sbjct: 206 RARNIGWRIDYFCISESLRNNLKDAFIMSEIM----------GSDHCPVGI 246
>gi|432942680|ref|XP_004083030.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Oryzias latipes]
Length = 311
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+W+++D K Y+G A+L K +P KV++ + K +++ +GRVI AEF TF+L+ Y P
Sbjct: 112 YWAVSDDKEGYSGVAMLSKT--EPLKVTYGIGKE--EHDKEGRVITAEFPTFFLVTAYVP 167
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N R+ WD Q ++ + KPL+ CGDLNV+H+EID+ +P+
Sbjct: 168 NAS--RGLVRLDYRKTWDVDFQAYLTELDVQKPLVLCGDLNVAHQEIDLKNPK------- 218
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 221
NK++ GFT ER+ F +L G +D++R L+ E+ F W+ +
Sbjct: 219 -----GNKKN---AGFTPEEREGFSQLLAAG-FVDSFRELYPEQANAYTF-WTYMMNSRA 268
Query: 222 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 269 KNVGWRLDYFLLSSSLVPGLCDSKIRNKAM------GSDHCPITLHLA 310
>gi|346986376|ref|NP_001231340.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
gi|4106095|gb|AAD02702.1| apurinic/apyrimidinic endonuclease [Cricetulus griseus]
gi|344257035|gb|EGW13139.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
Length = 317
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 128/238 (53%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+
Sbjct: 107 LQDLPGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFD 162
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVS 151
+F L+ Y PN G + R++WDK +F+ S KPL+ CGDLNV+HEEID+
Sbjct: 163 SFVLVTAYVPNAG--RGLVRLEYRQRWDKAFCKFLKDLASRKPLVLCGDLNVAHEEIDLR 220
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L D++R L+ F
Sbjct: 221 NPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDSFRHLYPNTPYAYTF 265
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 266 -WTYMMNARAKNVGWRLDYFLLSHSLLSSLCDSKIRSKAL------GSDHCPITLYLA 316
>gi|410725723|ref|ZP_11364086.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410601734|gb|EKQ56234.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 252
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
+ +W+ A+ K Y+GTA+ K+ K+ +E+ ++ +GRV+ EF FYL+N Y
Sbjct: 51 FNSYWNYAEKKGYSGTAVFTKEEPLSVKIGIGIEE----HDNEGRVLTLEFNDFYLVNVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K+ R W+ ++++ + K P+I CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KQGLERLDYRMVWEDVFRQYLKELEKKKPVILCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++ +L G ID YRF + +K+ + WS
Sbjct: 159 ---------KVNRKNAGFTDEEREKITQLLDSG-FIDTYRFFYPDKEGAYSW-WSYRFNA 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF+VSE LKD++ ++ +++E GSDHCPV L ++
Sbjct: 208 RANNAGWRIDYFLVSESLKDKLEDAKIH---MDIE---GSDHCPVELLIN 251
>gi|384898191|ref|YP_005773619.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRISWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|169345728|ref|ZP_02865687.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169297128|gb|EDS79244.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 250
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 33/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P V + + ++ +GRVI EFE F+++ Y
Sbjct: 50 YFQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDFFMVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F +L G ID +R+ + D++ +S WS
Sbjct: 158 ---------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDLEGVYSWWSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 206 ARKNNAGWRIDYFLVSNNLEDRIKEAFIDTEIL------GSDHCPVKL 247
>gi|420427852|ref|ZP_14926893.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
gi|393040038|gb|EJB41059.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
Length = 248
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 45 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLV 100
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 101 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 155
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 156 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 201
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 202 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 247
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 37/243 (15%)
Query: 30 LMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL 88
+ R +S F Y +W+ A K Y+GTA+ K +P V++ L + +++ +GRVI
Sbjct: 38 MQREQASFDFPGYHEYWNSAVKKGYSGTAVFSKT--EPLSVTYGLGQE--EHDQEGRVIT 93
Query: 89 AEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPLIWCGDLNVS 144
AE+ FYL+N Y PN+ + + R +W+ Q++ C+G KP+I CGDLNV+
Sbjct: 94 AEYPDFYLVNVYTPNS--QRGLTRLEYRMQWEDVFQDY---CAGLARKKPVIVCGDLNVA 148
Query: 145 HEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKE 204
+ ID+ +P+ + GFT ER +F L G +D++R L+ +
Sbjct: 149 AQPIDLKNPD---------------SNHKNAGFTDEERAKFQQFLDHG-FVDSFRSLYPD 192
Query: 205 KDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 264
K+ + WS + R RIDYF+VS+ KDRI + + GSDHCPV
Sbjct: 193 KEGAYTW-WSYMFKARERNAGWRIDYFLVSQNGKDRIQDVIIHNEVM------GSDHCPV 245
Query: 265 SLE 267
LE
Sbjct: 246 ELE 248
>gi|373851837|ref|ZP_09594637.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391230369|ref|ZP_10266575.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
gi|372474066|gb|EHP34076.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391220030|gb|EIP98450.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
Length = 251
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 116/231 (50%), Gaps = 36/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ WW+ A K Y+GTA+ + +P VS L ++ +GRV+ AEF FYL+N Y
Sbjct: 52 YRAWWNAAQKKGYSGTAIFSR--VEPVAVSCGLGLP--DHDNEGRVLTAEFADFYLVNVY 107
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN + E RR+W+ ++ KP++ CGD+NV+H+EID++ P
Sbjct: 108 VPNA--QHELVRLPYRRRWNADFLSYLRSLEKKKPVVVCGDMNVAHQEIDLARP------ 159
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
KE+ G GF+ ER+ F +L+ G +D +R K +SW G
Sbjct: 160 ---------KENVGNAGFSNEEREDFSTMLRAG-FVDTFREFEKGPGH---YSWWTYRAG 206
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RG+ + RIDYF+ S L+ R+ ++ GSDHCPV LEL
Sbjct: 207 A-RGRNIGWRIDYFLASAALRPRLKRAWIE------PTVMGSDHCPVGLEL 250
>gi|336435960|ref|ZP_08615673.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008000|gb|EGN38019.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
Length = 250
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
YQ W Y+GTA+ K+ +P V++ + +++ +GRVI EFE FY + Y
Sbjct: 51 YQYWNYAVKKGYSGTAVFTKQ--EPIGVTYGI--GIEEHDQEGRVITCEFEDFYFVTVYT 106
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ + E R +W+ + ++ KP++ GD+NV+H EID+ +P+
Sbjct: 107 PNS--QNELKRLDYRMRWEDDFRAYLKALDEKKPVVVTGDMNVAHAEIDLKNPK------ 158
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
N+++ GFT ER +F +L G ID +R+ + +++ + WS +
Sbjct: 159 ------SNRQN---AGFTDEERGKFTELLDAG-FIDTFRYFYPDQEGIYSW-WSYRFKAR 207
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF VSE +KDR+ ++ L YGSDHCPV LEL
Sbjct: 208 EKNAGWRIDYFCVSERMKDRLSDAKI------LTDIYGSDHCPVCLEL 249
>gi|420401021|ref|ZP_14900220.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
gi|393016629|gb|EJB17788.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
Length = 250
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSHPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|307212268|gb|EFN88076.1| Recombination repair protein 1 [Harpegnathos saltator]
Length = 327
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 30/217 (13%)
Query: 51 SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEE 110
S Y G AL K+ +P V + L + ++ +GR+I AEF F+++N Y PN G K
Sbjct: 136 SGYCGVALFCKE--KPVSVKYGLNNS--NFDSEGRIIAAEFPEFFMVNVYVPNAGQKLV- 190
Query: 111 NSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK 169
+ +R +W+K ++++ + KP+I CGD+NV+H+EID+ +P K
Sbjct: 191 -TLPKRLEWNKIFKKYIEELDQKKPVIICGDMNVAHQEIDLKNP---------------K 234
Query: 170 EDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRID 229
+ GFT ER L G ID +R L+ +K+ F WS + + R+D
Sbjct: 235 TNTKNAGFTKEERDGMTDFLAAG-FIDTFRLLYPDKEGAYTF-WSYFANARNKDIGWRLD 292
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
YF+ SE +K++I C+ I + YGSDHCPV L
Sbjct: 293 YFLASERIKNKI--CD----NIIRKQVYGSDHCPVIL 323
>gi|402813355|ref|ZP_10862950.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
gi|402509298|gb|EJW19818.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
Length = 263
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 34/235 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A K Y+GTA+ KK +P V + +E+ EP+GR++ EFE+F+L+N Y
Sbjct: 51 YEQYWNYALKKGYSGTAVFTKK--KPLSVRYGIEENE---EPEGRILTLEFESFFLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEIDVSHPEFFAA 158
PN+ + + S R + F LQ + KP+I CGDLNV+H+ ID+ +
Sbjct: 106 TPNS---KRDLSRLEERLEWEERFRFYLQKLDACKPVIVCGDLNVAHQVIDLKN------ 156
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
+K + G GFT ER++ IL++ D +R + ++ D WS P
Sbjct: 157 ---------SKSNHGNSGFTTEEREKM-TILQDAGFTDTFRHFYPDQ-TDAYTWWSYMPK 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 273
+ R RIDYF+VS L+D ++ + + + GSDHCP+ L +++ +
Sbjct: 206 VRERNIGWRIDYFLVSSRLRDFLVDARIDSNIL------GSDHCPIHLIMNDCDT 254
>gi|387783040|ref|YP_005793753.1| exodeoxyribonuclease [Helicobacter pylori 51]
gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINID--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|109946643|ref|YP_663871.1| exodeoxyribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|109713864|emb|CAJ98872.1| exodeoxyribonuclease [Helicobacter acinonychis str. Sheeba]
Length = 250
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GR+I EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRIITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ + F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NIYTPNS--QQALSRLNYRMSWEVEFRRFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNTG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNSLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|45361461|ref|NP_989307.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
gi|39794455|gb|AAH64266.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|51703687|gb|AAH80950.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|89267865|emb|CAJ83004.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
Length = 316
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+W+ D K Y+G A+L K +P V++ + +++ +GRVI AEF++F+L+ Y P
Sbjct: 117 YWACPDEKEGYSGVAMLCKD--KPLNVTYGI--GIEEHDKEGRVITAEFDSFFLIAAYVP 172
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N+ R++WD + ++ S KPLI CGDLNV+H+EID+ +P
Sbjct: 173 NSS--RGLVRLDYRQRWDVDFRAYLKGLDSKKPLILCGDLNVAHQEIDLKNP-------- 222
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 221
K + PGFT ER+ FG +L EG L D++R L+ +K F W+ +
Sbjct: 223 -------KTNKKTPGFTPQERQGFGELLAEGYL-DSFRELYPDKPSAYTF-WTYMMNARA 273
Query: 222 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R+DYF++S+ L+ + +++ GSDHCP++L ++
Sbjct: 274 KNVGWRLDYFVLSKALRPALCDSKVRSK------IMGSDHCPITLLMA 315
>gi|386753431|ref|YP_006226650.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|386754997|ref|YP_006228215.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
gi|384559689|gb|AFI00157.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|384561255|gb|AFI01722.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
Length = 250
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|421712459|ref|ZP_16151793.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
gi|407209732|gb|EKE79620.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
Length = 250
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVITFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|420434804|ref|ZP_14933804.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|420503423|ref|ZP_15001957.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
gi|420505338|ref|ZP_15003854.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393052572|gb|EJB53518.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|393116870|gb|EJC17374.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393149519|gb|EJC49829.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
Length = 250
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|444374829|ref|ZP_21174132.1| exodeoxyribonuclease III [Helicobacter pylori A45]
gi|443620688|gb|ELT81131.1| exodeoxyribonuclease III [Helicobacter pylori A45]
Length = 250
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|421719100|ref|ZP_16158390.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
gi|407218577|gb|EKE88401.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
Length = 250
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|407014279|gb|EKE28316.1| hypothetical protein ACD_3C00079G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 125/259 (48%), Gaps = 43/259 (16%)
Query: 14 QELK---DDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS 70
QE+K D A E +L+ + FKN+ Y+ TA+ K+ +P +V+
Sbjct: 34 QEVKATEDQFPARLEMELMWYSIYWNAAFKNW----------YSWTAIFTKE--KPLEVT 81
Query: 71 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 130
+ L +++ + R+I EFE FY + Y PN+ K E N + R+ WD +++ +
Sbjct: 82 YWL--WIWEHDNEWRIITLEFEKFYFITVYTPNS--KRELNRLEYRQLWDSLFLDYMRRL 137
Query: 131 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 189
KP++ C DLNV+H+EID+ +P+ PN+ GFT ER+ F L
Sbjct: 138 EVNKPVVVCWDLNVAHKEIDLKNPK------------PNR---WNAGFTDEEREGFQKFL 182
Query: 190 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 249
G ID +R+ + EK + WS + R RIDYF+ S LKD +
Sbjct: 183 NAG-FIDTFRYFYPEKTEAYSW-WSNFAFARDRNIGWRIDYFLTSWGLKDNL------KD 234
Query: 250 GIELEGFYGSDHCPVSLEL 268
++ GSDHCPV LE+
Sbjct: 235 AFIMDQILGSDHCPVWLEI 253
>gi|170665740|gb|ACB29409.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 538
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 31/228 (13%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+WS + SK Y+GTA++ + +P V + + ++ +GR++ AEF++FYL+NTY P
Sbjct: 336 FWSCSVSKLGYSGTAIISR--IKPLSVRYGTGLSGSDHDTEGRIVTAEFDSFYLINTYVP 393
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N+G + S+ R +WD+ + + + KP++ GDLN +HEEID+ +P
Sbjct: 394 NSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNP-------- 444
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 220
NK GFT ER+ FGA + +D +R K+ G++ W G+
Sbjct: 445 ----AGNKR---SAGFTEEERQSFGANFLDKGFVDTFR---KQHPGVVGYTYWGYRHGGR 494
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K R+DYF+VS+ IA + I L GSDHCP+ L L
Sbjct: 495 KTNKGWRLDYFLVSQS-----IAANVHDSYI-LPDINGSDHCPIGLIL 536
>gi|116493341|ref|YP_805076.1| exonuclease III [Pediococcus pentosaceus ATCC 25745]
gi|116103491|gb|ABJ68634.1| Exonuclease III [Pediococcus pentosaceus ATCC 25745]
Length = 251
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 31/230 (13%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
+Y +W+ A+ K Y+GTA+ KK +P V + L +++ +GR+I EFE FY++
Sbjct: 49 HYYQYWNYAEKKGYSGTAIFTKK--KPLAVRYGL--GIEEHDQEGRIITLEFEKFYVITC 104
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN+ + + + R WD + ++ Q + KP+I+CGDLNV+H+EID+ +
Sbjct: 105 YTPNS--QPKLKRLEYRMAWDDAFRAYIDQLNQHKPVIFCGDLNVAHQEIDLKN------ 156
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
+K + GFT ER +F +L G D YR+ + K+ + WS
Sbjct: 157 ---------DKTNHKNAGFTDEERNKFTQLLNSG-FTDTYRYFYPSKEGVYSW-WSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+ S+ L ++ ++ +GSDHCPV L+L
Sbjct: 206 ARANNAGWRIDYFVSSKALDQKLTDAQIHTE------IFGSDHCPVELDL 249
>gi|385230800|ref|YP_005790716.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
gi|344337238|gb|AEN19199.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
Length = 250
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|384893489|ref|YP_005767582.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|218291327|ref|ZP_03495287.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
gi|218238773|gb|EED05987.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
Length = 174
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 79 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 137
+++P+GR+I EF +FY++ Y PN K + + R +W+ + ++ KP+I
Sbjct: 7 RHDPEGRIITLEFPSFYVVTVYTPNA--KRDLSRLPYRLEWEDAFRAYLCALDREKPVIA 64
Query: 138 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 197
CGDLNV+HEEID+ + K + G GFT ER + +L G +D
Sbjct: 65 CGDLNVAHEEIDIKNA---------------KSNRGNSGFTDEERAKMTELLDAG-FVDT 108
Query: 198 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 257
+R L+ D WS P + R RIDYF+VSE L+DRI+ + H +
Sbjct: 109 FRALYPNV-TDKYTWWSNMPGVRERNIGWRIDYFLVSERLRDRILEARIDDHVL------ 161
Query: 258 GSDHCPVSLEL 268
GSDHCPV LE+
Sbjct: 162 GSDHCPVVLEV 172
>gi|406027905|ref|YP_006726737.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
gi|405126394|gb|AFS01155.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
Length = 256
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 31/228 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
YQ +++ A+ K Y+GTA+ K P V++ + +E GR I E+ FYL+ +Y
Sbjct: 50 YQQYFNYAERKGYSGTAIFTKHA--PLDVTYGINSDEFNHE--GRAITLEYPDFYLVTSY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+G + F R W+K +++ + K P+I CGDLNV+H+EID+ +P+
Sbjct: 106 VPNSGAGLKRLDF--RMGWNKAFYQYLTELDAKKPVILCGDLNVAHKEIDLKNPQ----- 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+ GFT ER+ F +LK G +D +R + ++ D WS
Sbjct: 159 ----------SNHHNAGFTDEERQDFTNLLKAG-FMDTFRHFYPDQ-TDIYSWWSYRFHS 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 267
+ R RIDYF+ S L D I ++ L +GSDHCPV L+
Sbjct: 207 RDRNAGWRIDYFVASNRLADEIEDSKI------LTDVFGSDHCPVELD 248
>gi|422339748|ref|ZP_16420705.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370591|gb|EHG17971.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 253
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 120/233 (51%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYYQYWNYAEKKGYSGTAIFTKQ--EPLSVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+E R W+ ++++ K P++ CGDLNV+H+EID+ +P
Sbjct: 103 TVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER +F +L G ID +R+ + +++ +S WS
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VS+ L+ ++ E+ GSDHCPV L L
Sbjct: 203 RANARKNNAGWRIDYFVVSKGLEKNLVDAEIHSQT------EGSDHCPVVLFL 249
>gi|156543084|ref|XP_001605156.1| PREDICTED: recombination repair protein 1-like isoform 1 [Nasonia
vitripennis]
gi|345493726|ref|XP_003427141.1| PREDICTED: recombination repair protein 1-like isoform 2 [Nasonia
vitripennis]
Length = 391
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 115/213 (53%), Gaps = 31/213 (14%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y G AL KK +P +S L++ +++ +GR+I AE+E FYL+N Y PN G K +
Sbjct: 203 YCGMALYSKK--EPIDISMGLDE---EFDDEGRLITAEYEHFYLVNVYVPNAGNKLV--T 255
Query: 113 FQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+R KW++ ++ + KP+I CGD+NV+H+EID+ +P K +
Sbjct: 256 LPKRLKWNEAFKKHIQDLDKKKPVIICGDMNVAHQEIDLKNP---------------KTN 300
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
GFT ER L+ G +D +R L+ +K D W+ + + R+DY+
Sbjct: 301 TKNAGFTKEERDGMTDFLQAG-FVDTFRLLYPDK-TDAYTFWAYFNNARSKNIGWRLDYY 358
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 264
IVSE++K+++ C++ + + +GSDHCPV
Sbjct: 359 IVSEKIKNKV--CDV----VNRDQVFGSDHCPV 385
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 123/238 (51%), Gaps = 36/238 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y ++W A+ K Y+GTA+ K +P +S+ L + + +GRVI E+E FYL+ Y
Sbjct: 51 YHLFWHYAEKKGYSGTAIFTKH--KPLSISYGLGEE--DEDTEGRVITLEYENFYLVTVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN + + + R W++ + ++++ KP+I CGDLNV+H++ID+ +
Sbjct: 107 TPNA--RRDLSRLDFRLAWEEMFRGYLIKLDEHKPVIVCGDLNVAHQDIDLKNA------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G GFT ER++ +L G ID++R+L+ ++ D WS P
Sbjct: 159 ---------KSNRGNSGFTDEEREKMTRLLDAG-FIDSFRYLYPDR-TDAYTWWSFMPKI 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 277
+ R RIDYF+ S L I+ GI+ + GSDHCPV L L D+EK
Sbjct: 208 RERNVGWRIDYFLASARLAPAIVEA-----GIDSQ-ILGSDHCPVVLTL-----DTEK 254
>gi|420473134|ref|ZP_14971815.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
gi|393086638|gb|EJB87312.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
Length = 250
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDIK--EHDKEGRVITCEFELFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKMRL------KDALIYKDILGSDHCPVGLEL 249
>gi|352518551|ref|YP_004887868.1| exodeoxyribonuclease [Tetragenococcus halophilus NBRC 12172]
gi|348602658|dbj|BAK95704.1| exodeoxyribonuclease [Tetragenococcus halophilus NBRC 12172]
Length = 275
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 38/237 (16%)
Query: 41 NYQIWWSLADS----KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
+Y+I W ++ YAGT L K +P ++F + +GR+I EF ++
Sbjct: 66 DYEIAWRSSEEPARKSYAGTMFLYKNMLEPT-ITFPEIGAPDTMDQEGRIITLEFPNCFV 124
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPE- 154
Y PN G + ++R WD++ +E+++ KP+I GD NV+H EID++HP+
Sbjct: 125 TQVYTPNAGGNLDR--LEKREAWDEKYREYLVALDEQKPVIASGDYNVAHTEIDLAHPDR 182
Query: 155 -FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
F+A GFT ER F +L G D +R++H D++ +SW
Sbjct: 183 NHFSA-----------------GFTDEERTNFTTLLNNG-FADTFRYVH--GDIEGHYSW 222
Query: 214 SGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
G + K RIDYF+VS+ LK+++I EM G DH P+ LE+
Sbjct: 223 WGQRVKTSKINNSGWRIDYFLVSDRLKNQVITSEMIDSGKR------QDHTPIFLEV 273
>gi|385229195|ref|YP_005789128.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
gi|344335633|gb|AEN16077.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
Length = 250
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GR+I EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRIITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|406931444|gb|EKD66730.1| hypothetical protein ACD_49C00017G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+I+W+ A+ K Y+GTA+ K +P VS+ L +++ + R+I EFE FY +N Y
Sbjct: 54 YEIYWNSANKKWYSGTAIFTK--IKPLSVSYWL--WLAEHDEEWRIITLEFENFYFVNVY 109
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K E R+ WD +++ + KP+I C D NV+H+EID+++P+
Sbjct: 110 TPNA--KRELERLDYRQLWDSLFLDYLKRLEQNKPVITCWDFNVAHQEIDLTNPK---TN 164
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K N GFT ER+ F + G ID +R+ + +K + + WS
Sbjct: 165 KWNA------------GFTPEEREWFSKFISSG-FIDTFRYFYPDKTWEYSW-WSNFANS 210
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF++S LK+++ + ++ + SDHCPV +E+
Sbjct: 211 RARNIGWRIDYFLISNTLKNKLKSAFIK------QEVRWSDHCPVGIEI 253
>gi|187735459|ref|YP_001877571.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
gi|187425511|gb|ACD04790.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
Length = 253
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 113/228 (49%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
+Q+W + Y+G +L + + +S S+ +++ +GRV EFE FYL+N Y
Sbjct: 53 HQLWNPAEKAGYSGVLILSRV----RPLSTSVGIGWPEHDREGRVCTMEFEGFYLVNCYT 108
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ + E R +WD +E+V + KP+++CGDLNV+HEEID++ P
Sbjct: 109 PNS--QNELVRLPYREQWDAAFREYVAGLAETKPVVFCGDLNVAHEEIDIARP------- 159
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
KE+ GF+ ER F +L+ G D +R LH E+ + WS +
Sbjct: 160 --------KENRFSAGFSDQERAGFTLLLEAG-FTDTFRALHPEEPGWYSW-WSYRAGAR 209
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R RIDYF VS L R+ + GSDHCPVSLE+
Sbjct: 210 ARNIGWRIDYFCVSNPLASRVKDAAIH------PDVTGSDHCPVSLEI 251
>gi|350268411|ref|YP_004879717.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
gi|348593251|dbj|BAK97211.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
Length = 250
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 34/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ AD Y+GTA+ + P +++ ++E GRVI AEFE FYL+ Y
Sbjct: 50 YEKFWNSADKPGYSGTAVFTR--VPPLNMTYDFGGDEYRHE--GRVITAEFEEFYLVCCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN ++E R +W+ ++++ + KP++ CGDLNV+HEEID+ +P
Sbjct: 106 TPNA--QDELRRIDYRMRWEDDFRDYLRELDRVKPVVLCGDLNVAHEEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + G GF+ ER + +L G D +R L+ EK +S WS
Sbjct: 158 ---------KTNRGHAGFSDQERGKMTELLSTG-FSDTFRTLYPEK---IAYSWWSYRFR 204
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYFIVS +++++ + + +GSDHCPV LEL
Sbjct: 205 AREKNAGWRIDYFIVSRRFQEKVV------DSLICDQVFGSDHCPVGLEL 248
>gi|340624333|ref|YP_004742786.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
gi|339904601|gb|AEK20043.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
Length = 249
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 40/231 (17%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P +VS+ + +++ +GRVI +F+ +YLLN Y
Sbjct: 50 YFQYWNYAERKGYSGTAIFTK--IKPNEVSYGIGNN--EHDGEGRVITLKFDEYYLLNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + + R+KWD+ +V K P+I+CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QRGLTRLEYRQKWDQDFLNYVKTLENKKPVIFCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER F I+ G +D +R +KE D +S+ N
Sbjct: 158 ---------KTNVKNAGFTPEERNGFDNIVNSG-FLDTFREFNKEPDNYSWWSYRFNARA 207
Query: 220 KYRGKRMRIDYFIVSE----ELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
K G RIDYF +S+ LKD I E+ GSDHCPV +
Sbjct: 208 KNIG--WRIDYFCISKSLKGNLKDAFIMPEVM----------GSDHCPVGI 246
>gi|335998084|ref|ZP_08563996.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
gi|335348598|gb|EGM50099.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
Length = 254
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 31/231 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P+ VS+ ++ + +E GRVI E+ +FYL+ Y
Sbjct: 50 YHQYWNYAERKGYSGTAIFTKH--EPQSVSYGIKNSEFDHE--GRVITLEYASFYLVCCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
+PN+ K + F R ++ ++ KP+I CGDLNV+HEEID+ +P
Sbjct: 106 SPNSQPKLKRLDF--RMGFEDAFLNYLNDLKEKKPVIMCGDLNVAHEEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER +L+ G L D +RF H ++ + WS
Sbjct: 158 ---------KTNHRNAGFSNEERSCMTRLLENGYL-DTFRFFHPDETGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ RIDYFIVSE LKD + E+ L GSDHCPV LE ++
Sbjct: 207 RKNNAGWRIDYFIVSESLKDSLENAEI------LTDIMGSDHCPVLLETAD 251
>gi|156362086|ref|XP_001625612.1| predicted protein [Nematostella vectensis]
gi|156212454|gb|EDO33512.1| predicted protein [Nematostella vectensis]
Length = 257
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 130/255 (50%), Gaps = 35/255 (13%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 77
D +E K L Y +W+ A+ K Y+G L KK +P KVS+ +
Sbjct: 33 DVFCIQETKCALADIPKEAKLAGYHCYWNSAEQKGYSGVGLCSKK--EPIKVSYGMGNK- 89
Query: 78 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLI 136
+++ +GRVI AE+E F+L+ +Y PN+G + R++W+K ++ + KP+I
Sbjct: 90 -EHDKEGRVITAEYEDFHLVTSYVPNSGRGLPRLGY--RQQWNKDFLSYLKKLDEIKPVI 146
Query: 137 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 196
CGDLNV+H++ID+++P K + GFT ER F +L EG D
Sbjct: 147 LCGDLNVAHKDIDLANP---------------KTNTRTAGFTKEERADFTTLLGEG-FKD 190
Query: 197 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELE 254
+R L+ +K F WS +G R K + R+DYF+VS+ L ++ C+ I
Sbjct: 191 TFRELYPDKKSAYTF-WS--YMGGARAKNVGWRLDYFVVSDRLVPKV--CD----SIIRS 241
Query: 255 GFYGSDHCPVSLELS 269
GSDHCP+SL LS
Sbjct: 242 RVMGSDHCPLSLLLS 256
>gi|256827574|ref|YP_003151533.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583717|gb|ACU94851.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 262
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 125/269 (46%), Gaps = 50/269 (18%)
Query: 16 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE 74
LK D A +E KL F +Y+ WS A+ K Y+GTA+ ++ +P +V L
Sbjct: 26 LKADVFALQETKL--QEGQIDLEFPDYESHWSYAERKGYSGTAVYARQ--KPLQVLHGLG 81
Query: 75 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-- 132
L E GR+ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 82 VPHLDTE--GRICALEFPEFWFVDVYTPNA--QNELARIDHRMEWDDAFRDF---CKGLE 134
Query: 133 -------------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTI 179
KP+I CGD NV+HEEID+ +P K + G GF+
Sbjct: 135 KGTTPLGPDTAQPKPVIMCGDFNVAHEEIDLKNP---------------KSNRGNAGFSD 179
Query: 180 AERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKD 239
ER++F +L G +D +R L+ ++ WS + RIDYF+VS+ L D
Sbjct: 180 EEREKFTKLLDAG-FVDTFRLLNP-TEVGAYSWWSYRFNARANNAGWRIDYFLVSKSLAD 237
Query: 240 RIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R+ A + +GSDHCPVSL++
Sbjct: 238 RVRAARIHAD------LFGSDHCPVSLDI 260
>gi|420484801|ref|ZP_14983422.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|420515183|ref|ZP_15013650.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
gi|393098636|gb|EJB99222.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|393155626|gb|EJC55898.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
Length = 250
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK + + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTHL------KDALIYKDILGSDHCPVGLEL 249
>gi|348679732|gb|EGZ19548.1| hypothetical protein PHYSODRAFT_408364 [Phytophthora sojae]
Length = 280
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 128/263 (48%), Gaps = 37/263 (14%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV--------- 69
+TK R+E L + P +Q W YA TA+ K +P V
Sbjct: 39 ETKICRDE---LQKIEDFLPQYEHQYWSCAVKKGYASTAIFSKT--KPLSVKDEIIVGDH 93
Query: 70 -SFSLEKTALK-YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK-RIQEF 126
S + K+A + +GR + E+ F+L++TY PN G K E F R +WDK ++E
Sbjct: 94 DSKGVSKSANSGKDQEGRFLALEYPKFWLVHTYVPNAGGKLERLDF-RTNQWDKAMLREM 152
Query: 127 VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 186
KP++WCGDLNV+H+EID+ +P+ NK GFT ER+ FG
Sbjct: 153 KEMEKTKPVVWCGDLNVAHQEIDIHNPK------------GNKR---SAGFTDEERESFG 197
Query: 187 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 246
IL+ G +D +R LH +K F + N + +G R+DYF+VSE+L +++
Sbjct: 198 NILENG-FVDTFRHLHPDKVEYSYFGYRHNMRAQNKG--WRLDYFVVSEKLMPNVVSVFG 254
Query: 247 QGHGIELEG-FYGSDHCPVSLEL 268
+ G GSDH P+ LEL
Sbjct: 255 WERSSYIRGSVVGSDHLPIGLEL 277
>gi|428281769|ref|YP_005563504.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 33/233 (14%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
+ Y ++W+ A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++
Sbjct: 49 EGYHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGIGLE--EHDQEGRVITLEFENVFVIT 104
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN+ E + R +W++ + ++L+ KP+I CGDLNV+H+EID+ +P
Sbjct: 105 VYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNP---- 158
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
K + GF+ ER+ F L+ G +D++R H D++ +SW
Sbjct: 159 -----------KANRNNAGFSDQEREAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYR 204
Query: 218 IG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
G + R RIDYF+VSE LK++I + + GSDHCPV L ++
Sbjct: 205 AGARDRNIGWRIDYFVVSERLKEQIEDASISADVM------GSDHCPVELIIN 251
>gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|396078071|dbj|BAM31447.1| exodeoxyribonuclease [Helicobacter cinaedi ATCC BAA-847]
Length = 251
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 35/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y +W+ A+ K Y+G +L K +P +V++ + + ++ +GR+I AE+E FYL+
Sbjct: 47 FQGYSEYWNSAEKKGYSGVVVLSK--IKPLQVTYDMGIS--HHDKEGRIITAEYERFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN K E + R +W+ + FV + KP++ CGDLNV+H+EID+ +P
Sbjct: 103 NVYTPNA--KRELERLEYRMEWEDDFRAFVKKLKKHKPVVICGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER + +L+ G ID +R H ++ +SW +
Sbjct: 158 ------------KTNRRNAGFTDEERGKMSELLESG-FIDTFR--HFYPTLEGAYSW-WS 201
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+GK R RIDYF+ S L+ + ++ H +GSDHCPV L +
Sbjct: 202 YMGKARENNTGWRIDYFLCSTSLESHLKDAKIYPH------IFGSDHCPVGLSM 249
>gi|347534242|ref|YP_004840912.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504298|gb|AEN98980.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 283
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 112/238 (47%), Gaps = 32/238 (13%)
Query: 38 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
P YQ W YAGTA+ K QP KV L+ +P+GR I E+ FYL+
Sbjct: 75 PSDYYQYWNDAERPGYAGTAVFTKH--QPLKVMLGLDGN--DQDPEGRAITLEYPNFYLV 130
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
N YAP G EE + +WD+++ FV + + KP+I GDLN++HE ID+ PE
Sbjct: 131 NVYAPAAG--EELQRLTFKEEWDQKLITFVDKLKATKPVIINGDLNIAHEPIDIYAPE-- 186
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
E GFT AER++ +L G D YR H ++ + WS
Sbjct: 187 -------------EHRHAAGFTDAERQQMTQLLDSG-FTDIYRATHPDEPNKYTW-WSYR 231
Query: 217 PIGKYRGKRMRIDYFIVSEEL-KDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 273
+ R+DYFI+S L KD I M + GSDHCP+ L L+ ++
Sbjct: 232 DHARRDNHGWRLDYFIISNNLVKDVKITTIM-------DTVSGSDHCPLQLILNNLTT 282
>gi|158298437|ref|XP_318609.4| AGAP009587-PA [Anopheles gambiae str. PEST]
gi|157013880|gb|EAA14571.4| AGAP009587-PA [Anopheles gambiae str. PEST]
Length = 606
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 34/234 (14%)
Query: 39 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
K Y +W +AG A+ KK P V++ L + + DGR++ AE+E FYL+
Sbjct: 403 IKGYHPYWLCKPGGHAGVAIYSKKM--PFHVAYGLGDE--EQDQDGRLLTAEYEKFYLVC 458
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN G K + +R +W+++ +++ K P+I CGD+NV+HEEID+++P+
Sbjct: 459 VYVPNAGRKL--VTLPKRLRWNEKFHQYLRDLDAKKPVILCGDMNVAHEEIDLANPKT-- 514
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
NK++ GFT ER+ +L G +D +R L+ ++ F W+
Sbjct: 515 ----------NKKNA---GFTPEEREGMTELLSYG-FVDTFRKLYPDRTGAYTF-WTY-- 557
Query: 218 IGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+G R K + R+DYFI SE L ++ ++ +GSDHCPV+L L+
Sbjct: 558 MGGARAKNVGWRLDYFITSERLAGKVTDNVIRSQ------VFGSDHCPVTLFLN 605
>gi|335356439|ref|ZP_08548309.1| exodeoxyribonuclease [Lactobacillus animalis KCTC 3501]
Length = 253
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 121/232 (52%), Gaps = 31/232 (13%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
+Y +W+ A K Y+GTA+ KK +P V+ L +++ +GRV+ E+E FYL+N
Sbjct: 49 DYYQYWNYAQKKGYSGTAIFTKK--KPLAVTKGLGLA--EFDQEGRVLTLEYEDFYLVNC 104
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN+ K + F R +W+ + + + KP+I CGDLNV+H EID+ +P+
Sbjct: 105 YTPNSQDKLKRLDF--RLQWEAAFSDHLTNLATKKPVILCGDLNVAHNEIDLKNPK---- 158
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
PN+++ GF+I ER+ A+L G D +R ++ +K + WS
Sbjct: 159 --------PNQKN---AGFSIQERQAMTALLARG-FTDTFRHIYLDKTGAYSW-WSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ R RIDYFI S L ++ ++ L GSDHCPV LE +E
Sbjct: 206 ARARNAGWRIDYFICSNALLPQVKDSQI------LPEILGSDHCPVMLETNE 251
>gi|335045714|ref|ZP_08538737.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759500|gb|EGL37057.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 251
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 138/271 (50%), Gaps = 36/271 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ A K+ ++ ++L D +E KL + L P + +Q W Y+GTA+
Sbjct: 12 LRAVMGKNFMEDFRKLDADIFCLQETKLQAGQIELDLPGY--FQYWNYAVKKGYSGTAIF 69
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K+ +P VS+ + +++ +GRVI AEF+ FYL+ Y PN+ + E R ++
Sbjct: 70 TKE--EPISVSYGI--GVEEHDQEGRVITAEFKDFYLITVYVPNS--QGELKRLPYRMEF 123
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ ++L K P+++CGDLNV+HEEID+ +P+ + GF+
Sbjct: 124 EDAFLSYILNLEKKKPVVYCGDLNVAHEEIDLKNPD---------------TNHLSAGFS 168
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER +F +L G L D++R+ + EK+ +S WS + R RIDYF+VS++L
Sbjct: 169 DEERAKFSRVLDSGYL-DSFRYFYPEKE---EYSWWSYRTKARERNVGWRIDYFVVSKKL 224
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ ++ + + + GSDHCPV L L
Sbjct: 225 EKKLHSASIHTEIM------GSDHCPVELIL 249
>gi|325970995|ref|YP_004247186.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
gi|324026233|gb|ADY12992.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
Length = 250
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 115/230 (50%), Gaps = 32/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +WS A+ K Y+GTAL K+ +P V + + +GR + AEFE FY++ Y
Sbjct: 50 YHTYWSFAEKKGYSGTALFSKQ--EPVSVQRGI---GHPLDNEGRTVTAEFEQFYVVCCY 104
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ +E R WD+ + +V S KP+I CGDLNV+H+ ID+ HP
Sbjct: 105 TPNS--QEALARLDTRMDWDEAFRSYVCSLASMKPVIICGDLNVAHQSIDLRHP------ 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G++I ER +F ++L G ID +R+L+ ++ + WS
Sbjct: 157 ---------KANERNAGYSIEERNQFTSLLDAG-FIDTFRYLYPNREGIYSW-WSYRFKA 205
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDY++VSEEL+ I+ + GSDH PV L L+
Sbjct: 206 RENNAGWRIDYWLVSEELRQSILDSTIDTET------QGSDHAPVILYLN 249
>gi|386760800|ref|YP_006234017.1| ExoA protein [Bacillus sp. JS]
gi|384934083|gb|AFI30761.1| ExoA [Bacillus sp. JS]
Length = 252
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 33/233 (14%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
+ Y ++W+ A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++
Sbjct: 49 EGYHVYWNYAVKKGYSGTAVFSKQ--EPLRVMYGI--GIEEHDQEGRVITLEFENVFVMT 104
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN+ E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 105 IYTPNSRRGLERIDY--RMQWEEALLSYILELDKKKPVILCGDLNVAHQEIDLKNP---- 158
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
K + GF+ ER F +L+ G +D++R H D++ +SW
Sbjct: 159 -----------KANRKNAGFSDQERGAFSRLLEAG-YVDSFR--HVYPDLEGAYSWWSYR 204
Query: 218 IG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
G + R RIDYF+VSE LK++I + GI + GSDHCPV L ++
Sbjct: 205 AGARDRNIGWRIDYFVVSESLKEQI-----EDAGIS-KDVMGSDHCPVELIIN 251
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048168|ref|ZP_09109722.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355528751|gb|EHG98229.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
Length = 250
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 124/232 (53%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y+ +W+ A+ K Y+GTA+ + P V++ L +++ +GRVI E F+L+
Sbjct: 47 FEGYRSYWNYAEKKGYSGTAIFSRHA--PLNVTYGLGLE--EHDKEGRVITLEMPDFFLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++ R +W++ + ++LQ + KP+I CGDLNV+H EID+ +P
Sbjct: 103 TVYTPNS--QDGLKRLDYRMQWEEAFRAYLLQLDTRKPVIVCGDLNVAHREIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER++FG +L G D +RF + +++ + WS
Sbjct: 158 ------------KSNRKNAGFTDEEREKFGILLDSG-FTDTFRFFYPDREGIYSW-WSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+VS+ L+ +++ I E F GSDHCPV ++L
Sbjct: 204 FKAREKNAGWRIDYFLVSKRLE-----AQLKSATIHTEIF-GSDHCPVEVDL 249
>gi|406882429|gb|EKD30227.1| hypothetical protein ACD_78C00115G0011 [uncultured bacterium (gcode
4)]
Length = 254
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
YQ++W+ A+ K Y+GTA+ K +P V + +++ +GR+I EFE ++ + Y
Sbjct: 54 YQVYWNAAERKGYSGTAVFSK--IKPLSVRYGY--GMAEHDTEGRIITLEFEEYFFVTVY 109
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K E + R+ WD +++ + KP+I GDLNV+H++ID+S+P
Sbjct: 110 TPNA--KRELERLEYRQLWDSLFFDYLKRLEAEKPVIVSGDLNVAHKDIDLSNP------ 161
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G GFT ER FG L +G ID +R + K + + WS
Sbjct: 162 ---------KANRGSAGFTDEERDGFGKFLSDG-FIDTFRHFYPNKTEEYTW-WSNFFHA 210
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R R+DYF++SE L++R+ + ++ + GSDHCPV +E+
Sbjct: 211 RDRNIGWRLDYFLISEWLRERLKSAFIR------QEIRGSDHCPVGVEI 253
>gi|395333468|gb|EJF65845.1| hypothetical protein DICSQDRAFT_77688 [Dichomitus squalens LYAD-421
SS1]
Length = 280
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 121/235 (51%), Gaps = 36/235 (15%)
Query: 45 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 103
+W+++D K Y+GTA+L K +P V + L K GR++ EFE+ Y++ TY N
Sbjct: 69 YWAISDKKTYSGTAILSK--IEPLSVKYDLPGHPDKSAVKGRIVTLEFESCYVIGTYVTN 126
Query: 104 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162
G + +++W+K + ++ + K P+IW GDLNV+ +D+++P
Sbjct: 127 AG--TGLKTLDAKKEWNKHFEVYIRELDKKKPVIWTGDLNVAPTALDLANP--------- 175
Query: 163 GYVPPNKEDWGQ-PGFTIAERKRFGAILKEG-------RLIDAYRFLHKEKDMDCGFSWS 214
K +W + PG+T AE F +L E + +D +R H + FS+
Sbjct: 176 ------KTNWNKTPGYTEAETSAFARVLNEDGAEPDAPKFVDVWRKRHPDLRHYTYFSYR 229
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
N + +G R+D F+VSE L++++ CE++ E + SDHCPV LEL+
Sbjct: 230 FN--CREKGLGWRLDMFVVSERLEEKVQMCEIRS-----EIYGASDHCPVVLELA 277
>gi|323340218|ref|ZP_08080482.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417972789|ref|ZP_12613677.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323092409|gb|EFZ35017.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346330854|gb|EGX99085.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 254
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 117/231 (50%), Gaps = 31/231 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P+ VS+ + + +E GRVI E+ +FYL+ Y
Sbjct: 50 YHQYWNYAERKGYSGTAIFTKH--EPQSVSYGIHNSEFDHE--GRVITLEYASFYLVCCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
+PN+ K + F R ++ ++ KP+I CGDLNV+HEEID+ +P
Sbjct: 106 SPNSQPKLKRLDF--RMGFEDAFLNYLNDLKEKKPVIMCGDLNVAHEEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER +L+ G L D +RF H ++ + WS
Sbjct: 158 ---------KTNHRNAGFSNEERSCMTRLLENGYL-DTFRFFHPDETGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ RIDYFIVSE LKD + E+ L GSDHCPV LE ++
Sbjct: 207 RKNNAGWRIDYFIVSESLKDSLENAEI------LTDIMGSDHCPVLLETAD 251
>gi|421145619|ref|ZP_15605476.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
gi|395487984|gb|EJG08882.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
Length = 253
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 123/238 (51%), Gaps = 43/238 (18%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y +W+ A+ K Y+GTA+ K+ +P VS+ L +++ +GRVI EFE FY++
Sbjct: 47 LKGYHQYWNYAEKKGYSGTAIFTKQ--EPLTVSYGL--GIEEHDKEGRVITLEFEKFYMV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K++ R W+ ++++ K ++ CGDLNV+HEEID+ +P
Sbjct: 103 TVYTPNS--KDKLLRLDYRMTWEDEFRKYLKNLEKKKAVVVCGDLNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + +++ +SW
Sbjct: 158 ------------KTNRRNAGFTDEERGKFTELLDSG-FIDTFRYFY--PNLEQVYSW--- 199
Query: 217 PIGKYRGKRM------RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
YRG+ RIDYF+VS+ L+ ++ E+ IE GSDHCPV L L
Sbjct: 200 --WSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQ-IE-----GSDHCPVVLIL 249
>gi|118375590|ref|XP_001020979.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila]
gi|89302746|gb|EAS00734.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila
SB210]
Length = 396
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 119/249 (47%), Gaps = 34/249 (13%)
Query: 25 EEKLILMRALSSPPFKNYQIW-WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEP 82
E I + P YQ W + + K Y+G ++ K+ K +S ++E
Sbjct: 157 ESNFIKEKVYKDIPSGYYQYWNFCIPPIKGYSGVSIFSKE----KVISIKKGIDIAEHEN 212
Query: 83 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 141
+GRV+ AEF+ FYL+ Y PN G + + R +DK Q ++ Q K +I CGDL
Sbjct: 213 EGRVLTAEFDKFYLVVVYVPNAGSELVRLDY-RVNSFDKDFQNYLNQLKLKKNVILCGDL 271
Query: 142 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 201
NV+H+EID+++P K + PGFTI ER F L+ G ID +RFL
Sbjct: 272 NVAHQEIDIANP---------------KSNRNSPGFTIEERNSFSKFLESG-WIDTFRFL 315
Query: 202 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 260
+ E +S WS + RIDYF+V++E K I + + YGSD
Sbjct: 316 YPET---IKYSWWSVRTKARESNIGWRIDYFVVNKEFKSSIKDSMINNN------IYGSD 366
Query: 261 HCPVSLELS 269
HCPV L+
Sbjct: 367 HCPVEFILN 375
>gi|420419486|ref|ZP_14918576.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
gi|393031392|gb|EJB32464.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
Length = 250
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|225026087|ref|ZP_03715279.1| hypothetical protein EUBHAL_00328 [Eubacterium hallii DSM 3353]
gi|224956574|gb|EEG37783.1| exodeoxyribonuclease III [Eubacterium hallii DSM 3353]
Length = 250
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 124/232 (53%), Gaps = 37/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKV--SFSLEKTALKYEPDGRVILAEFETFYLLN 98
Y+ +W+ A+ K Y+GTA+ KK P KV +E+ ++ +GRVI EFE F+ +
Sbjct: 50 YECYWNYAEKKGYSGTAVFTKK--HPLKVWNGIGMEE----HDQEGRVITLEFEDFFFVT 103
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN+ + E R KW+ +E++ + KP+I GDLNV+HEEID+ +P+
Sbjct: 104 VYTPNS--QSELKRLDYRMKWEDDFREYLQELDKEKPVIMTGDLNVAHEEIDLKNPK--- 158
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGN 216
NK++ GFT ER +F +L G +D++R+L+ E + ++ WS
Sbjct: 159 ---------TNKKN---AGFTQEERNKFTELLGAG-FVDSFRYLNPE--LAGAYTWWSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+VSE K++I I + GSDHCP+ L++
Sbjct: 204 FKAREKDAGWRIDYFVVSERWKEKI------EDAIIYKTVMGSDHCPIGLQM 249
>gi|418030667|ref|ZP_12669152.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351471726|gb|EHA31839.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 252
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 33/233 (14%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
+ Y ++W+ A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++
Sbjct: 49 EGYHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGI--GVEEHDQEGRVITLEFENVFVMT 104
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN+ E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 105 VYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNP---- 158
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
K + GF+ ER F L+ G +D++R H D++ +SW
Sbjct: 159 -----------KANRNNAGFSDQERGAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYR 204
Query: 218 IG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
G + R RIDYF+VSE LK++I + + GSDHCPV L ++
Sbjct: 205 AGARDRNIGWRIDYFVVSERLKEQIEDASISADVM------GSDHCPVELIIN 251
>gi|421491432|ref|ZP_15938798.1| exodeoxyribonuclease III [Streptococcus anginosus SK1138]
gi|400371534|gb|EJP24493.1| exodeoxyribonuclease III [Streptococcus anginosus SK1138]
Length = 275
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 118/262 (45%), Gaps = 38/262 (14%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 69
QE K K ++ L ++ L F NYQ W A YAGT L K+ PK +
Sbjct: 43 QETKLSAKGPTKKHLTILEEL----FPNYQHTWRSSIEPARKGYAGTMFLYKENLSPK-I 97
Query: 70 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 129
+F + +GR+I EFE F++ Y PN G + + R+ WDK+ +++
Sbjct: 98 TFPEIGAPSTMDAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTT 155
Query: 130 CSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 188
KP++ GD NV+H EID++HP N+ PGFT ER F +
Sbjct: 156 LDKEKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNL 200
Query: 189 LKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 246
L G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 201 LNRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEM 257
Query: 247 QGHGIELEGFYGSDHCPVSLEL 268
G DH P+ LE+
Sbjct: 258 IDSGTR------QDHTPIVLEI 273
>gi|421077946|ref|ZP_15538906.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
gi|392523930|gb|EIW47096.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
Length = 250
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A K Y+GTA+ + P V + L +++ +GR+I EFE F+L+N Y
Sbjct: 50 YEKYWNSAVKKGYSGTAVFTR--ITPLSVIYGLNIE--EHDQEGRLITLEFENFFLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K E R +W+ + +++ + KP+I CGD+NV+H+EID+ +P
Sbjct: 106 TPNS--KRELLRLDYRMRWEDEFRTYLITLNQSKPVIICGDINVAHQEIDIKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER + A+L+ G D +R ++ +K +D WS
Sbjct: 158 ---------KTNRRNAGFTDEERDKMTALLEAG-FTDTFRHIYPDK-IDAYTWWSYMMNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VS L++ I + GSDHCP+ LE+
Sbjct: 207 RARNIGWRIDYFLVSNTLREAIKEATI------YPDVMGSDHCPIGLEI 249
>gi|420437930|ref|ZP_14936910.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
gi|393050857|gb|EJB51811.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
Length = 243
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 40 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGI--NIEEHDKEGRVITCEFESFYLV 95
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 96 NVYTPNS--QQALFRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 150
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 151 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 196
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 197 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 242
>gi|386760994|ref|YP_006234629.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
gi|385146010|dbj|BAM11518.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
Length = 251
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 35/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y +W+ A+ K Y+G +L K +P +V++ + + ++ +GR+I AE+E FYL+
Sbjct: 47 FQGYSEYWNSAEKKGYSGVVVLSK--IKPLQVAYDMGIS--HHDKEGRIITAEYERFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN K E + R +W+ + FV + KP++ CGDLNV+H+EID+ +P
Sbjct: 103 NVYTPNA--KRELERLEYRMEWEDDFRAFVKKLKKHKPVVICGDLNVAHKEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER + +L+ G ID +R H ++ +SW +
Sbjct: 158 ------------KTNRRNAGFTDEERGKMSELLESG-FIDTFR--HFYPTLEGAYSW-WS 201
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+GK R RIDYF+ S L+ + ++ H +GSDHCPV L +
Sbjct: 202 YMGKARENNTGWRIDYFLCSTSLESHLKDAKIYPH------IFGSDHCPVGLSM 249
>gi|150402181|ref|YP_001329475.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
gi|150033211|gb|ABR65324.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
Length = 249
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 40/231 (17%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P V ++ T +++ +GRV+ EF+ +YL+N Y
Sbjct: 50 YFQYWNYAEKKGYSGTAIFTK--IKPNNVILGIKNT--EHDGEGRVLTLEFDKYYLINVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + + R+KWD+ ++ KP+I+CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QRGLTRLEYRQKWDQDFLNYIKTLENEKPVIFCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER F I+ G ID +R +KE D +S+ N
Sbjct: 158 ---------KNNVKNAGFTPEERIGFDNIVDSG-FIDTFREFNKEPDNYSWWSYRFNARS 207
Query: 220 KYRGKRMRIDYFIVS----EELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
K G RIDYF +S + LKD I E+ GSDHCPV +
Sbjct: 208 KNIG--WRIDYFCISKILRDNLKDAFIMSEVM----------GSDHCPVGI 246
>gi|421053769|ref|ZP_15516741.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|421061178|ref|ZP_15523542.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|421066246|ref|ZP_15527876.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
gi|421070869|ref|ZP_15531997.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392441646|gb|EIW19276.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|392447774|gb|EIW24993.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392450902|gb|EIW27905.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|392457143|gb|EIW33851.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
Length = 250
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A K Y+GTA+ + P V++ L +++ +GR+I EFE F+L+N Y
Sbjct: 50 YEKYWNSAVKKGYSGTAVFTR--IAPLSVTYGLNIE--EHDQEGRIITLEFEDFFLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K E R +W+ + ++ KP+I CGD+NV+H+EID+ +P
Sbjct: 106 TPNS--KRELLRLDYRMRWEDEFRTYLTALDQSKPVIICGDINVAHQEIDIKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER + A+L+ G D +R ++ +K +D WS
Sbjct: 158 ---------KTNRRNAGFTDEERDKMTALLEAG-FTDTFRHIYPDK-IDAYTWWSYMMNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VS L++ I + + GSDHCP+ LE+
Sbjct: 207 RARNIGWRIDYFLVSNALREAIKEATIYPDVM------GSDHCPIGLEI 249
>gi|399215902|emb|CCF72590.1| unnamed protein product [Babesia microti strain RI]
Length = 459
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 138/292 (47%), Gaps = 49/292 (16%)
Query: 10 PKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQ---- 65
P QEL+D + + L FK Y++ SLA + G +L+KK F
Sbjct: 176 PTYEQELEDGS---------FIDNLMKTSFKKYKVIHSLASWRVRGQMILLKKSFTVSNS 226
Query: 66 ----PKKVSFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
PK++ ++L ++ A + +GRV++ EF++FYL++ P NGW E S ++R+KW
Sbjct: 227 TFILPKRIRYNLNIKQNAKYHNHEGRVVIIEFDSFYLMSLITPGNGWITE--SIKQRKKW 284
Query: 120 DKRIQEFVLQCSG--KPLIWCGDLNVSHEEIDVSHPEFFAAAKL-NGYVPPNKEDWGQPG 176
D + F L+ S K +I G+LN S E+IDVS+P AA KL V +E G PG
Sbjct: 285 DLELTTF-LKASKYIKAVIMVGNLNCSPEDIDVSNP---AALKLEKTAVLHEEEQHGYPG 340
Query: 177 FTIAERKRFGAILKEGRLIDAYRFLH------KEKDMDCGFSWSGNPIGKYRGK------ 224
+R F LK G L D YRF++ E D + S + NP G
Sbjct: 341 TREVDRNGFEETLKAGDLWDVYRFMNPVEVEESESDSNALASTAKNPKYTSIGTGAIYLV 400
Query: 225 --------RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+R ++S + I +CE+ G +L+ F G H PV L L
Sbjct: 401 QTGDKCKCAVRTTLALMSTKFLRNIKSCEILGTMADLKPF-GWRHLPVGLTL 451
>gi|330996654|ref|ZP_08320532.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329572726|gb|EGG54359.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 250
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 124/232 (53%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y+ +W+ A+ K Y+GTA+ + P V++ L +++ +GRVI E F+L+
Sbjct: 47 FEGYRSYWNYAEKKGYSGTAIFSRHA--PLNVTYGLGLE--EHDREGRVITLEMPDFFLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++ R +W++ + ++LQ + KP+I CGDLNV+H EID+ +P
Sbjct: 103 TVYTPNS--QDGLKRLDYRMQWEEAFRAYLLQLDTRKPVIVCGDLNVAHREIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER++FG +L G D +RF + +++ + WS
Sbjct: 158 ------------KSNRKNAGFTDEEREKFGILLDSG-FTDTFRFFYPDREGIYSW-WSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+VS+ L+ +++ I E F GSDHCPV ++L
Sbjct: 204 FKAREKNAGWRIDYFLVSKRLE-----AQLKSATIHTEIF-GSDHCPVEVDL 249
>gi|253826925|ref|ZP_04869810.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313142047|ref|ZP_07804240.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253510331|gb|EES88990.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313131078|gb|EFR48695.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
Length = 252
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 35/244 (14%)
Query: 30 LMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL 88
+ R ++ F NY+ +W+ A+ K Y+G A+ K K +S + + ++ +GR+I
Sbjct: 38 MQREQATFDFPNYEEYWNSAEKKGYSGVAIFSK----TKPLSVAYDMGIAHHDKEGRIIC 93
Query: 89 AEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEE 147
AE++ FYL+N Y PN+ K E R +W+ + ++ KP+I CGDLNV+H+E
Sbjct: 94 AEYKDFYLVNVYTPNS--KRELERLSYRMEWEDDFRAYLKNLEKTKPVIVCGDLNVAHQE 151
Query: 148 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 207
ID+ +P K + GFT ER++ +L G D +R H +
Sbjct: 152 IDLKNP---------------KTNRRNAGFTDEEREKMTQLLDSG-FTDTFR--HFYPTL 193
Query: 208 DCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 265
+ +SW + +GK R RIDYF+ S+ L +++ ++ +GSDHCPV
Sbjct: 194 EGAYSW-WSYMGKARENNTGWRIDYFLCSKALDSKLLDAKIYPE------VFGSDHCPVG 246
Query: 266 LELS 269
LE++
Sbjct: 247 LEIN 250
>gi|449096551|ref|YP_007429042.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
gi|449030466|gb|AGE65705.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
Length = 252
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 33/233 (14%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
+ Y ++W+ A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++
Sbjct: 49 EGYHVYWNYALKKGYSGTAVFSKQ--EPLQVIYGI--GVEEHDQEGRVITLEFENVFVMT 104
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN+ E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 105 VYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNP---- 158
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
K + GF+ ER F L+ G +D++R H D++ +SW
Sbjct: 159 -----------KANRNNAGFSDQERGAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYR 204
Query: 218 IG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
G + R RIDYF+VSE LK++I + + GSDHCPV L ++
Sbjct: 205 AGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------GSDHCPVELIIN 251
>gi|384888368|ref|YP_005762879.1| exodeoxyribonuclease [Helicobacter pylori 52]
gi|261840198|gb|ACX99963.1| exodeoxyribonuclease [Helicobacter pylori 52]
Length = 250
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINID--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|385221296|ref|YP_005782768.1| exodeoxyribonuclease III [Helicobacter pylori India7]
gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFSKK--EPLSVSYGINIE--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|401680683|ref|ZP_10812594.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
gi|400218294|gb|EJO49178.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
Length = 251
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 136/272 (50%), Gaps = 37/272 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA +K + EL D +E KL + L P ++ Q W S Y+GTA+
Sbjct: 11 LRAAVTKGFIDSFNELDADIFCLQETKLQPHQIELELPGYE--QFWNSAVKKGYSGTAVF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V+ + +++ +GRVI AEF+ FYL+ Y PN+ + E R W
Sbjct: 69 TR--IKPIAVTNGI--GIEEHDQEGRVITAEFDNFYLVCCYTPNS--QRELARLDYRMAW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + ++L+ K P+I CGDLNV+H EID+ +P K + GF+
Sbjct: 123 EDAFRAYLLELDKKKPVILCGDLNVAHNEIDLKNP---------------KTNRKNAGFS 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEE 236
ER + +L+ G D +R+L+ D +SW + +GK R + + RIDYFI S+
Sbjct: 168 DEERAKMTTLLESG-FTDTFRYLY--PDAVDEYSW-WSYMGKARDRNVGWRIDYFITSKR 223
Query: 237 LKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
L D+I ++ + +GSDHCPV L++
Sbjct: 224 LDDKINEAKIH------QQIFGSDHCPVELDI 249
>gi|150388422|ref|YP_001318471.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
gi|149948284|gb|ABR46812.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
Length = 251
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 122/234 (52%), Gaps = 35/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y+ +W+ A K Y+GTA+ K+ K +S + E +GRV+ EF+ FYL+
Sbjct: 47 LEGYEQYWNYAVKKGYSGTAVFTKE----KPISVKYGVGEEEDEEEGRVLTLEFDQFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ K R W+ + + + KP+I CGDLNV+HEEID+ +P+
Sbjct: 103 NVYTPNS--KRGLERLDGRMIWEDEFRAHLKELDAIKPVILCGDLNVAHEEIDLKNPK-- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
NK+ GFT ER++ +L G ID++R+ + D++ +SW +
Sbjct: 159 ----------SNKK---SAGFTNEEREKMTELLTSG-FIDSFRYFY--PDLEGAYSW-WS 201
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+GK R + RIDYF+VSE LK+++ + GSDHCPV LEL
Sbjct: 202 YMGKARERNAGWRIDYFVVSERLKNQLKEAAIHPQ------IMGSDHCPVVLEL 249
>gi|420405856|ref|ZP_14905029.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
gi|393021675|gb|EJB22805.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
Length = 250
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GR++ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRMVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|385226164|ref|YP_005786089.1| exodeoxyribonuclease III [Helicobacter pylori 83]
gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GR++ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRMVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|296330017|ref|ZP_06872501.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676741|ref|YP_003868413.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153056|gb|EFG93921.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414985|gb|ADM40104.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 252
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y ++W+ A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++ Y
Sbjct: 51 YHVYWNYAVKKGYSGTAVFSKQ--EPLRVMYGIGIE--EHDQEGRVITLEFENLFVMTVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERIDYRMQWEEALLSYILELDKKKPVILCGDLNVAHQEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER F +L+ G +D++R H D++ +SW G
Sbjct: 159 ---------KANRNNAGFSDQERGAFTRLLEAG-FVDSFR--HVYPDLEGAYSWWSYRAG 206
Query: 220 -KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R R+DYF+VSE L+++I + + GSDHCPV L ++
Sbjct: 207 ARDRNIGWRLDYFVVSERLEEQIEDASISADVM------GSDHCPVELMIN 251
>gi|421715822|ref|ZP_16155136.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
gi|407214330|gb|EKE84179.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
Length = 250
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ ++ +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGIDME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK + + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTHL------KDALIYKDILGSDHCPVGLEL 249
>gi|188528295|ref|YP_001910982.1| exodeoxyribonuclease III [Helicobacter pylori Shi470]
gi|188144535|gb|ACD48952.1| exodeoxyribonuclease [Helicobacter pylori Shi470]
Length = 250
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFELFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSHPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|160915303|ref|ZP_02077516.1| hypothetical protein EUBDOL_01312 [Eubacterium dolichum DSM 3991]
gi|158433102|gb|EDP11391.1| exodeoxyribonuclease III [Eubacterium dolichum DSM 3991]
Length = 252
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 31/231 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y + + AD K Y+G + KK +P VS+ L +++ +GRVI E++TFYL+ Y
Sbjct: 50 YVQYMNSADKKGYSGVMVFSKK--EPLSVSYGLGID--EHDHEGRVITCEYDTFYLVCVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K+ R +W+ + ++ + K ++ CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--KDGLLRLDYRMQWEDAFRAYLQRLKESKSVVVCGDLNVAHQEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++ +L G +D+YR+L+ +K+ + WS
Sbjct: 158 ---------KTNRRNAGFTDEEREKMTTLLSSG-FVDSYRYLYPDKENVYSW-WSYRFSA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ + RIDYF+VSE+ K+RI E Q H YGSDHCPVSL +
Sbjct: 207 REKNAGWRIDYFLVSEDAKERIE--EAQIH----TDIYGSDHCPVSLSFKD 251
>gi|386751875|ref|YP_006225095.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
gi|384558133|gb|AFH98601.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
Length = 250
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFELFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSHPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|312898827|ref|ZP_07758215.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
gi|310619989|gb|EFQ03561.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
Length = 250
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 128/270 (47%), Gaps = 33/270 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A K P+ +EL D +E KL + P Y+ +W+ AD K Y+GTA+
Sbjct: 11 LRAVMKKGFPEIFKELDADIFCLQETKLQAGQIEMDLP--GYEQYWNYADKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P VS+ + +++ +GR+I EFE FY + Y PN+ + E R +W
Sbjct: 69 TR--IKPLSVSYGMNID--EHDHEGRLITLEFEDFYFITCYTPNS--QSELARLDYRMRW 122
Query: 120 DKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + +V + + KP+I+CGDLNV+HEEID+ +P K + GF+
Sbjct: 123 EDDFRNYVTELNRTKPVIFCGDLNVAHEEIDLKNP---------------KTNRKNAGFS 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER + +L G D +R+ + +K+ + WS + RIDYFI S L
Sbjct: 168 DEERAKMTELLAAG-FTDTWRYFYPDKEGVYSW-WSYRFKARQNNSGWRIDYFITSSALD 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R+ + GSDHCPV L +
Sbjct: 226 SRL------KEALIYTNIEGSDHCPVGLVI 249
>gi|259503288|ref|ZP_05746190.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
gi|259168743|gb|EEW53238.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
Length = 275
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 112/240 (46%), Gaps = 40/240 (16%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F YQ+ W A YAGT L ++ +QP +S+ + +GR+I EF F
Sbjct: 64 FPGYQVAWRSSVEPARKGYAGTMYLYREQYQPT-ISYPQIGAPEPMDSEGRIITLEFPDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 150
+L Y PN+G N +R R +WD ++++ + KP+I GD NV+HEEID+
Sbjct: 123 FLTEVYTPNSG-----NGLKRLAEREQWDDCYRDYLHELDQQKPVIASGDFNVAHEEIDL 177
Query: 151 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 210
+HP + GFT ER FG +L G D++RFLH D
Sbjct: 178 AHP---------------ANNHHSAGFTDEERTHFGKLLDAG-FTDSFRFLH--PDQAGA 219
Query: 211 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+SW + K RIDY+++S+ L DR+ + M G DH P+ LE+
Sbjct: 220 YSWWAQRVLTSKQNNSGWRIDYWLISDRLADRVSSSTMIDSGER------RDHTPIMLEI 273
>gi|110801105|ref|YP_695823.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
gi|110675752|gb|ABG84739.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
Length = 250
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 33/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ KK +P V + + ++ +GRVI EFE +++ Y
Sbjct: 50 YFQYWNYAEKKGYSGTAIFTKK--EPLNVYYGINME--HHDKEGRVITLEFEDLFMVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R +W+ + ++L+ S K ++ CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F +L G ID +R+ + D++ +S WS
Sbjct: 158 ---------KTNRKNAGFTDEERDKFSTLLSSG-FIDTFRYFN--PDLEGVYSWWSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+VS L+DRI + + GSDHCPV L
Sbjct: 206 ARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------GSDHCPVKL 247
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FRGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|384895029|ref|YP_005769078.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
gi|308064283|gb|ADO06170.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
Length = 250
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFELFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSHPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|259047804|ref|ZP_05738205.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259035481|gb|EEW36736.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 254
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 35/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y+++++ A K Y+GTA+ K+ +P V + + +++ +GRVI AE+E FYL+
Sbjct: 50 FSEYEVFFNSAVKKGYSGTAIFTKE--KPLSVEYGI--GIEEHDQEGRVITAEYEKFYLV 105
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN K + + + R+ W+ F+ + KP+I+CGDLNV+H+EID+++P
Sbjct: 106 TVYTPNA--KRDLSRLEYRQVWEDDFLAFIKKLEETKPVIFCGDLNVAHKEIDLANP--- 160
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F ++ L+DA+R+L+ D +SW +
Sbjct: 161 ------------KTNTMNAGFTKEERAKFDQVVN-NDLVDAFRYLY--PDTLGAYSW-WS 204
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+G R + + RIDYF++S+ L + +++ GSDHCPV +++
Sbjct: 205 YMGGARARNVGWRIDYFVISQPLTAFLQEVKIRSD------VTGSDHCPVEMKI 252
>gi|384890060|ref|YP_005764362.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
gi|297380626|gb|ADI35513.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
Length = 250
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFELFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|225159347|ref|ZP_03725644.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera
colitermitum TAV2]
gi|224802053|gb|EEG20328.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera
colitermitum TAV2]
Length = 259
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 114/237 (48%), Gaps = 36/237 (15%)
Query: 41 NYQIWWSLADSK-YAGTALLVK------KCFQPKKVSFSLEKTALKYEPDGRVILAEFET 93
Y W+ A + Y+GTA+ + P V+ + + +++ +GRV+ AEF
Sbjct: 51 GYTAHWNAAQKRGYSGTAIFTRMGAGSSPALTPLAVTAGIGRD--EHDTEGRVLTAEFPD 108
Query: 94 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSH 152
FYL+N Y PN + E R++WD ++ + KP++ CGDLNV+HEEID++
Sbjct: 109 FYLVNAYVPNA--QPELARLPYRQRWDADFLAYLRGLETRKPVVMCGDLNVAHEEIDLAR 166
Query: 153 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 212
P KE+ G PGF+ ER F L+ G +D +R K +S
Sbjct: 167 P---------------KENVGNPGFSNEERAGFREFLRAG-FLDTFREFEKGPGHYSWWS 210
Query: 213 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ GK G RIDYF+ S L+ R+ ++ GSDHCP+ LEL+
Sbjct: 211 YRAGARGKNVG--WRIDYFLASASLRPRLKRAWIE------PAVMGSDHCPIGLELA 259
>gi|421712646|ref|ZP_16151978.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
gi|407217447|gb|EKE87280.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
Length = 250
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FNGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNTG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|358068175|ref|ZP_09154645.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
gi|356693719|gb|EHI55390.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
Length = 252
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+G A+ K +P KV++ + +++ +GR+I AEFE +Y+L Y
Sbjct: 51 YYDYWNYAQKKGYSGVAMFTKD--KPVKVTYGM--GIEEHDNEGRIITAEFENYYMLTCY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + + + R W+ +++ S KPLI+CGDLNV+ +ID+ +P
Sbjct: 107 TPNS--QRQLTRLEYRMDWEDAFLDYIKNLSQKKPLIYCGDLNVAFADIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++ A+++ D++R+L+ D++ +SW + +G
Sbjct: 159 ---------KTNRKNAGFTDEERQKM-AVVQASGFTDSFRYLY--PDLEGVYSW-WSYMG 205
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R K + RIDYF+VS+ LK+ I + GSDHCPV LE+
Sbjct: 206 GARSKNIGWRIDYFMVSDSLKNCIKQARIH------TDIMGSDHCPVELEI 250
>gi|310659330|ref|YP_003937051.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
gi|308826108|emb|CBH22146.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
Length = 250
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+Y+ +W+ A+ K Y+GTA+ K +P V++ ++ ++ +GRVI E++ FYL+
Sbjct: 47 LNDYEQYWNYAEKKGYSGTAVFTK--IKPISVAYGIDIE--HHDTEGRVITLEYDNFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN + + + R +W+ + ++ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNA--QPKLARLEYRMQWEDDFRRYLNDLDEKKPVIVCGDLNVAHNEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKE-KDMDCGFSWSG 215
K + PGF+ ER +F +L G ID++RF + + +M +S+
Sbjct: 158 ------------KSNRKNPGFSDEERGKFTNLLDSG-FIDSFRFFYPDATEMYTWWSYRF 204
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
N + RIDYF VS +LK+ E++ I ++ GSDHCPV LE+
Sbjct: 205 N--ARENNAGWRIDYFCVSNKLKN-----ELKNAEIHMD-ILGSDHCPVVLEI 249
>gi|425790226|ref|YP_007018143.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
gi|425628541|gb|AFX89081.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
Length = 250
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYVPNS--QQALSRLSYRMGWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLDAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|239624599|ref|ZP_04667630.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520985|gb|EEQ60851.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 251
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 37/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ ++ +P VS+ + +++ +GRVI AEF +Y++ Y
Sbjct: 51 YHQYWNYALKKGYSGTAMFTRE--EPLSVSYGIGME--EHDTEGRVITAEFPDYYVVTCY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KPLIWCGDLNVSHEEIDVSHPEFF 156
PN+ ++ R KW+ +F+ G KP+++CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--QDGLARLDYRMKWE---DDFLAYLKGLEKKKPVVFCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER +F +L G ID +R+ + + + + WS
Sbjct: 159 ------------KTNRKNAGFTDEERGKFTDLLSAG-FIDTFRYFYPDAEGIYSW-WSYR 204
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LKDR+++ + + GSDHCPV L +
Sbjct: 205 FSARAKNAGWRIDYFCVSESLKDRLVSAAIHTEVM------GSDHCPVELVM 250
>gi|355574795|ref|ZP_09044431.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
gi|354818271|gb|EHF02763.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
Length = 261
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPD-GRVILAEFETFYLLNT 99
Y W+ A+ K Y+GTA+ ++ +P +V + + ++ D GRV EFE ++ ++
Sbjct: 60 YHQTWNYAERKGYSGTAVFSRE--EPLRV---IRQIGCEFADDEGRVCALEFERYWFVDV 114
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN+ K R WD+ +EF+ + KP++ CGD NV+HEEID+ +P+
Sbjct: 115 YTPNS--KNGLLRLDERMVWDRSYREFLSGLAKEKPVVTCGDFNVAHEEIDLKNPD---T 169
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
+N GF+ ER+ FG +L+ G +D++R L+ +++ D WS
Sbjct: 170 NHMNA------------GFSDEEREGFGKLLEAG-FVDSFRRLYPDRE-DAYSWWSYRMR 215
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VSE+ D I+ + L+ YGSDHCPV L L
Sbjct: 216 ARERNVGWRIDYFLVSEDAADGIVEASI------LDDVYGSDHCPVQLTL 259
>gi|116333326|ref|YP_794853.1| exonuclease III [Lactobacillus brevis ATCC 367]
gi|116098673|gb|ABJ63822.1| Exonuclease III [Lactobacillus brevis ATCC 367]
Length = 254
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 129/262 (49%), Gaps = 35/262 (13%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QEL D +E KL + P Y +W+ A+ K Y+GTAL K QP V +
Sbjct: 24 QELNADFFGIQETKLQAGQIELDLP--GYYQYWNYAERKGYSGTALFTKH--QPLNVIYG 79
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 132
++ A +++ +GR I E+ FY+L Y PN+G + F R W+ F+ +
Sbjct: 80 ID--APEFDHEGRAITLEYPDFYVLTCYTPNSGSGLKRLDF--RLGWEHAFLTFIQKLDA 135
Query: 133 -KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP+I+CGDLNV+H EID+ +P K + GFT ER + A+L
Sbjct: 136 QKPVIFCGDLNVAHTEIDLKNP---------------KTNHHNAGFTDEERAKMTALLAA 180
Query: 192 GRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 250
G D +R+ + D+ +S WS + RIDYFI S+ L++ + ++
Sbjct: 181 G-YTDTFRYFN--PDVTERYSWWSYRFHARDNNAGWRIDYFITSQRLQNHLQDAKI---- 233
Query: 251 IELEGFYGSDHCPVSLELSEAS 272
L+ GSDHCPV L++++ +
Sbjct: 234 --LDQIMGSDHCPVELDVTDLT 253
>gi|374583527|ref|ZP_09656621.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
gi|374419609|gb|EHQ92044.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
Length = 262
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K +P + + + K +++ +GR+I EFE FY++ Y
Sbjct: 50 YYQYWNFAQKKGYSGTAIFSK--IEPLNIVYGMGKE--EHDKEGRLITLEFEKFYVVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVL---QCSGKPLIWCGDLNVSHEEIDVSHPEFFA 157
APN+ + R KW+ +++ +C KP+I CGDLNV+H+E+D+ +P
Sbjct: 106 APNS--QRGLARLDYRMKWEDDFLNYIIGLEKC--KPVIVCGDLNVAHKEMDLKNPS--- 158
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
NK++ GFT ER +F ++ +G +D +RF + +K + WS
Sbjct: 159 ---------TNKKN---AGFTPEERSKFDEVINKG-FVDTFRFFYPDKTQAYTW-WSYMF 204
Query: 218 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF VS ELK ++ + + + GSDHCPV LE+
Sbjct: 205 NARANNAGWRIDYFCVSAELKSQL------RNAVIYQDVLGSDHCPVGLEI 249
>gi|150399093|ref|YP_001322860.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
gi|150011796|gb|ABR54248.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
Length = 257
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 32/224 (14%)
Query: 45 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 103
+W+ A+ K Y+GTA+ K +PK V + + T K + +GRVI EFE ++L+N Y PN
Sbjct: 61 YWNYAEKKGYSGTAIFTK--IEPKSVKYGI--TNYKSDKEGRVITLEFEEYFLVNVYTPN 116
Query: 104 NGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162
+ + + R+KWDK + KP+I+CGDLNV+H+EID+ +P
Sbjct: 117 S--QRGLKRLECRQKWDKDFLNHLKTLEQKKPVIFCGDLNVAHKEIDLKNP--------- 165
Query: 163 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 222
K++ GFT ER F ++ G +D +R L+ E + +S+ N K
Sbjct: 166 ------KQNIKNAGFTKEERNGFDNLINSG-FLDTFRELNNEPENYTWWSYRFNAREKNI 218
Query: 223 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
G RIDYF +S++L++R+ + GSDHCPV +
Sbjct: 219 G--WRIDYFCISKKLRERL------KDAFIMSEVLGSDHCPVGI 254
>gi|167748893|ref|ZP_02421020.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|317470265|ref|ZP_07929659.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167651863|gb|EDR95992.1| exodeoxyribonuclease III [Anaerostipes caccae DSM 14662]
gi|316902238|gb|EFV24158.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 251
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 33/231 (14%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
+Y +W+ A+ K Y+GTA+ K +P V + +E GRVI EF+ ++L+
Sbjct: 50 DYYQYWNYAEKKGYSGTAVFTK--IKPLSVKNGIGVDEFDHE--GRVITLEFDDYFLVTC 105
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN+ + E R W++ +E++L+ KP+I CGDLNV+H EID+ +P
Sbjct: 106 YTPNS--QSELARLSYRMDWEENFREYLLKLEEDKPVILCGDLNVAHTEIDLKNP----- 158
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNP 217
K + GFT ER++F +L+ G ID +R H D+ +S WS
Sbjct: 159 ----------KTNRKNAGFTDEEREKFTKLLEAG-FIDTFR--HFYPDVTEAYSWWSYRF 205
Query: 218 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE L++R+ + YGSDHCPV L L
Sbjct: 206 RAREKNAGWRIDYFCVSEGLEERL------AEAVIHTDIYGSDHCPVGLYL 250
>gi|47213945|emb|CAF94476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 129/239 (53%), Gaps = 33/239 (13%)
Query: 34 LSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 91
++S P Y+ +W+ +D K Y+G A+L K +P KV++ + K +++ +GRVI AEF
Sbjct: 111 ITSMPEYPYK-YWAGSDDKEGYSGVAMLCKT--EPVKVTYGIGKE--EHDKEGRVITAEF 165
Query: 92 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDV 150
F+L+ Y PN+G R+ WD + ++ + KP++ CGDLNV+H+EID+
Sbjct: 166 PGFFLVTAYVPNSG--RGLVRLDYRKTWDADFRTYLSELDVQKPVVLCGDLNVAHQEIDL 223
Query: 151 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 210
+P+ NK++ GFT ER+ FG +L+ G +D++R L+ E+
Sbjct: 224 KNPK------------GNKKN---AGFTAEEREGFGQLLEAG-FVDSFRELYPEQSHAYS 267
Query: 211 FSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
F W+ + + R+DYF++S L + +++ GSDHCP++L ++
Sbjct: 268 F-WTYMMNARDKNVGWRLDYFVLSSSLLPGLCDSKIRNQ------VKGSDHCPITLHMA 319
>gi|385227690|ref|YP_005787614.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
gi|344332603|gb|AEN17633.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
Length = 250
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCALKKGYSGVVTFSKK--EPLSVSYGI--NIEEHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|350268379|ref|YP_004879686.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349601266|gb|AEP89054.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 252
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y ++W+ A K Y+GTA+ K+ +P V + + +++ +GRVI EFE +++ Y
Sbjct: 51 YHVYWNYAVKKGYSGTAVFSKQ--KPLHVMYGI--GIEEHDQEGRVITLEFENLFVMTVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KRGLERIDYRMQWEEALLSYILELDKKKPVILCGDLNVAHQEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER F L+ G +D++R H D++ +SW G
Sbjct: 159 ---------KANRNNAGFSEQERGAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYRAG 206
Query: 220 -KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R R+DYF+VSE LK++I + + GSDHCPV L ++
Sbjct: 207 ARDRNIGWRLDYFVVSERLKEQIEDASISADVM------GSDHCPVELMIN 251
>gi|336429860|ref|ZP_08609818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336001765|gb|EGN31900.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 252
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 125/233 (53%), Gaps = 33/233 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K+ +P VS+ L +++ +GRVI EF FY++ Y
Sbjct: 50 YHQYWNYAVKKGYSGTAIFTKE--EPLSVSYGLGLE--EHDQEGRVITLEFPDFYMVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ ++ R W++ +++ + K P+I+CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QDGLARLDYRMTWEEEFLKYLKKLEEKKPVIFCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER++F +L+ G ID +R+ + D+ +S WS
Sbjct: 158 ---------KTNRKNAGFTDEEREKFSVLLENG-FIDTFRYFY--PDLKDAYSWWSYRFH 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
+ + RIDYF+VS +LK+R+ + + +GSDHCPV+L L EA
Sbjct: 206 AREKNAGWRIDYFLVSPQLKERL------EDAVIYKDVFGSDHCPVALILKEA 252
>gi|357405967|ref|YP_004917891.1| exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
gi|351718632|emb|CCE24306.1| Exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
Length = 254
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 132/262 (50%), Gaps = 50/262 (19%)
Query: 16 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE 74
L +TKA ++ + ++ S Y I+ + A K Y+G ALL K+ +P ++ L+
Sbjct: 32 LLQETKAQDDQVQTALESIDS-----YHIYSNSAGRKGYSGVALLTKQ--EPIQI---LQ 81
Query: 75 KTAL-KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SG 132
+ +++ +GRVI AEFE F LLN Y PN+G E+ R+ WDK + + Q S
Sbjct: 82 DIGIDEHDQEGRVIAAEFENFILLNVYVPNSG--EKLVRLDYRKIWDKELLAYFQQLNSR 139
Query: 133 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 192
KPLI CGD NV+H+EID++ P+ A N G+T E +L+ G
Sbjct: 140 KPLIACGDFNVAHQEIDIARPK----ANYN----------KSAGYTQTEIDGISRMLEAG 185
Query: 193 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEEL----KDRIIACEM 246
+D +R LH E +SW G R K + RIDY + S+ L K+ IA ++
Sbjct: 186 -FVDTFRHLHPET---VAYSWWSYRAGA-RAKNIGWRIDYVLTSQALIGKVKNAFIAPDI 240
Query: 247 QGHGIELEGFYGSDHCPVSLEL 268
+GSDHCPV +E+
Sbjct: 241 ----------FGSDHCPVGIEI 252
>gi|266623165|ref|ZP_06116100.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
gi|288865076|gb|EFC97374.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
Length = 251
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ +P V++ + +++ +GRVI AEF +Y++ Y
Sbjct: 51 YHQYWNYAEKKGYSGTAMFTKE--EPLSVAYGI--GIEEHDHEGRVITAEFSDYYVVTCY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K+ R W+ ++ KP+I+CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--KDGLARLPYRMVWEDAFLRYLKGLEEKKPVIFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER +F +L G ID +R+ + +++ + WS
Sbjct: 159 ---------KTNRKNAGFTDEERGKFTDLLDAG-FIDTFRWFYPDREEIYSW-WSYRFSA 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LKDR+++ ++ + GSDHCPV L +
Sbjct: 208 RSKNAGWRIDYFCVSEALKDRLVSADIHTEVL------GSDHCPVELVI 250
>gi|223985143|ref|ZP_03635238.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
gi|223962889|gb|EEF67306.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
Length = 252
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 29/228 (12%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
+Q W S Y+GTA+ K+ +P V + ++ ++ +GRVI EFE FY + Y
Sbjct: 51 HQYWHSAERKGYSGTAVFTKQ--KPLSVRYDFDEAEGEHPKEGRVITLEFEQFYFVTAYV 108
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ KEE R +W+ + + + + KP+++ GDLNV+ EEID+ +P K
Sbjct: 109 PNS--KEELARLDYRMQWEDAMARHLAKLNETKPVVYTGDLNVAVEEIDLKNP------K 160
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
N + PGF+ ER++ +L G D +R L+ EK +S+ N K
Sbjct: 161 TNHF---------NPGFSDQERQKMRDLLSLG-FADTFRTLYPEKVEYSWWSYRFNSRAK 210
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
G RIDYFIVS+ L +++ + G + GSDHCPV +E+
Sbjct: 211 NVG--WRIDYFIVSQRLMNQVKDSVIYGDIL------GSDHCPVGVEI 250
>gi|385249934|ref|YP_005778153.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|420402627|ref|ZP_14901815.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|393016094|gb|EJB17254.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
Length = 250
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK + + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTHL------KDALIYKDILGSDHCPVGLEL 249
>gi|217031877|ref|ZP_03437380.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298735503|ref|YP_003728024.1| exodeoxyribonuclease III [Helicobacter pylori B8]
gi|216946529|gb|EEC25131.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298354688|emb|CBI65560.1| exodeoxyribonuclease III [Helicobacter pylori B8]
Length = 250
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FNGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINIE--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK R+ + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDILGSDHCPVGLEL 249
>gi|325299788|ref|YP_004259705.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
gi|324319341|gb|ADY37232.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
Length = 251
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 31/231 (13%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
F Y +W+ A+ K Y+GTA+ + QP VS+ + +++ +GRVI E E FYL
Sbjct: 46 AFDGYTSYWNYAEKKGYSGTAIFTRH--QPLNVSYGMGID--EHDREGRVITLEMENFYL 101
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN+ ++ R W+ + ++L+ K P++ CGDLNV+H+EID+ +P
Sbjct: 102 VTVYTPNS--QDGLKRLDYRMTWEDAFRRYLLELDAKKPVLVCGDLNVAHKEIDLKNP-- 157
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K + GFT ER++F +L G ID +R+ + E++ + WS
Sbjct: 158 -------------KTNRMNAGFTDQEREKFQTLLDAG-FIDTFRYFYPEQEGIYSW-WSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ + RIDYF+ S L A +++ I E F GSDHCPV +
Sbjct: 203 RFRAREKNAGWRIDYFLASARL-----AGKLESAAIHTEIF-GSDHCPVEV 247
>gi|159906029|ref|YP_001549691.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
gi|159887522|gb|ABX02459.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
Length = 249
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 40/231 (17%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P +V + + +++ +GRVI +F+ +YL+N Y
Sbjct: 50 YFQYWNYAERKGYSGTAVFTK--IKPNEVIYGIGNN--EHDGEGRVITLKFDEYYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + + R+KWD+ +V K P+I+CGDLNV+H+E+D+ +P
Sbjct: 106 TPNS--QRGLTRLEYRQKWDQDFLNYVKTLENKKPVIFCGDLNVAHKEVDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ERK F I+ G +D +R +KE D +S+ N
Sbjct: 158 ---------KTNVKNAGFTPEERKGFDNIVNSG-FLDTFREFNKEPDNYSWWSYRFN--A 205
Query: 220 KYRGKRMRIDYFIVSE----ELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ R RIDYF +SE LKD I E+ GSDHCPV +
Sbjct: 206 RARNIGWRIDYFCISESLRGNLKDAFIMPEIM----------GSDHCPVGI 246
>gi|408907629|emb|CCM11287.1| Exodeoxyribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 251
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 123/234 (52%), Gaps = 35/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y +W+ A K Y+G L K+ +P V + + +++ +GRV++ E+ FYL+
Sbjct: 47 FEGYHAFWNSAVKKGYSGVLTLSKE--EPLSVRYGIGIA--EHDLEGRVVVCEYSQFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN + R W+K + F+ + K ++ CGDLNV+H EID+++P+
Sbjct: 103 NVYVPNA--QRGLLRLPYRLSWEKAFRGFLSGLVAHKGVLVCGDLNVAHTEIDLTNPQ-- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
A + N GF+ ER F A+L+EG ID YR + E+ ++W +
Sbjct: 159 -ANRYNA------------GFSDPERHAFSALLQEG-FIDTYRHFYPEQKE--AYTW-WS 201
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
IG+ R + + RIDYF+ S+ L+D + + H +GSDHCPV LEL
Sbjct: 202 YIGQARERNVGWRIDYFLASQNLQDTLKNAHIYTH------IFGSDHCPVGLEL 249
>gi|406897912|gb|EKD41704.1| hypothetical protein ACD_73C00569G0001 [uncultured bacterium]
Length = 250
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 110/228 (48%), Gaps = 35/228 (15%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
+ W S Y+GTA+ K QP ++ L +++ +GRVI EF +YL+N Y
Sbjct: 52 HHYWNSAIKKGYSGTAIFCK--VQP--IASQLGIGIEEHDNEGRVITLEFSDYYLVNVYT 107
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN + E R KWD ++ + S KP+I+CGDLNV+H+EID+++P
Sbjct: 108 PNA--QRELTRLDYRMKWDADFLNYLKKLESHKPVIFCGDLNVAHKEIDLANP------- 158
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS--WSGNPI 218
K + G GFT ER F IL+ G +D +R + GF WS
Sbjct: 159 --------KTNQGNAGFTPQERDGFSKILESG-FVDTFRLFNNSG----GFYTWWSYMAG 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ R RIDYF S LK+++ + + + GSDHCPV L
Sbjct: 206 ARPRNIGWRIDYFCTSYNLKNKVKSSAIHAQVM------GSDHCPVEL 247
>gi|189460159|ref|ZP_03008944.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
gi|189433149|gb|EDV02134.1| exodeoxyribonuclease III [Bacteroides coprocola DSM 17136]
Length = 253
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 31/234 (13%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
F+ Y +W+ A+ K Y+GTA+ + QP V++ L +++ +GRVI E E FYL
Sbjct: 48 AFEGYTSYWNYAEKKGYSGTAIFTRH--QPLSVTYGLGID--EHDHEGRVITLEMENFYL 103
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN+ ++ R W++ ++++LQ KP++ CGDLNV+H+EID+ +P+
Sbjct: 104 VTVYTPNS--QDGLKRLDYRMTWEEDFRKYLLQLDRQKPVLVCGDLNVAHKEIDLKNPK- 160
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
++N GFT ER++F +L G ID +R + ++ + WS
Sbjct: 161 --TNRMNA------------GFTDQEREKFQLLLDAG-FIDTFRHFYPTQENIYSW-WSY 204
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYF+ S + D+ +Q I E F GSDHCPV + ++
Sbjct: 205 RFKAREKNAGWRIDYFLASSRIADK-----LQDAKIHTEIF-GSDHCPVEVTIN 252
>gi|365854004|ref|ZP_09394256.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
gi|363711540|gb|EHL95270.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
Length = 250
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 115/230 (50%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTAL K+ +P V + ++ +E GR I E+ FYL+ +Y
Sbjct: 50 YHQYFNYAERKGYSGTALFAKQ--EPMSVMYGIQSDEFDHE--GRAITLEYPDFYLVTSY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+G + F R WD Q+++ + KP+I CGDLNV+H+ ID+ +P+
Sbjct: 106 VPNSGAGLKRLDF--RMGWDAAFQDYLSRLDKEKPVILCGDLNVAHKTIDLKNPQ----- 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
+ GFT ER F L G +D++R H DM+ +S WS
Sbjct: 159 ----------SNHHNAGFTDEERDSFTRFLDMG-FMDSFR--HFYPDMEDIYSWWSYRFH 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+ S L +I ++ L YGSDHCPV+L L
Sbjct: 206 ARDRNAGWRIDYFVTSNRLAPKIADSKI------LTDIYGSDHCPVALIL 249
>gi|365904744|ref|ZP_09442503.1| Exodeoxyribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 253
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ AD K Y+GTA+ K+ +P + L+ +E GR I E+ FYL+N+Y
Sbjct: 50 YHQYFNYADRKGYSGTAVFSKQ--EPLNIETGLDDDEFNHE--GRTITLEYPDFYLINSY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ K + F R D + KP+I CGDLNV+H EID+ +
Sbjct: 106 TPNSQPKLKRLDF-RMGYNDAMWKHMQTLSKKKPVILCGDLNVAHNEIDIKN-------- 156
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIG 219
+K + PGF+ ER +F +L G D +R+LH E + +S WS
Sbjct: 157 -------DKTNHKNPGFSDEERNKFSELLDSG-FTDTFRYLHPE---EVKYSWWSYRFNA 205
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF++S +D I ++ L YGSDHCP+ L+L+
Sbjct: 206 RKNNAGWRIDYFVISNNGQDLIQNADI------LNDVYGSDHCPIQLDLN 249
>gi|227498619|ref|ZP_03928763.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904075|gb|EEH89993.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 251
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 134/269 (49%), Gaps = 33/269 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A +K ++ ++L D + +E K+ R +S F Y +W+ A K Y+GTA+
Sbjct: 11 LRACMNKGFKESMEKLDADIISIQETKM--QREQASFDFPGYYEYWNSAVKKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V++ L +++ +GRVI AE++ FYL+N Y PN+ + E R W
Sbjct: 69 SR--IKPLSVTYGL--GIEEHDQEGRVITAEYDDFYLVNVYTPNS--QRELARLSYRMAW 122
Query: 120 DKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ Q + S K I CGD+NV+HE ID+ +P+ + GF+
Sbjct: 123 EDAFQAYCEDLSKKKTTIVCGDMNVAHEPIDLKNPD---------------SNHHNAGFS 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER++ A L G +D++R L+ +++ + WS + R RIDYF+VSE +
Sbjct: 168 DEERQKLDAFLARG-FVDSFRMLYPDREGAYTW-WSYMFKARERNAGWRIDYFLVSEAGR 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLE 267
D+I + + GSDHCPV LE
Sbjct: 226 DKIRDVTI------MNEIMGSDHCPVVLE 248
>gi|296880312|ref|ZP_06904277.1| exodeoxyribonuclease III, partial [Clostridium difficile NAP07]
gi|296428755|gb|EFH14637.1| exodeoxyribonuclease III [Clostridium difficile NAP07]
Length = 181
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 65 QPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 124
+P KV + + +++ +GRVI EFE FY + Y PN+ + E + R +W+
Sbjct: 3 EPLKVMYGI--NIEEHDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFI 58
Query: 125 EFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERK 183
+++ + KP+I CGD+NV+H+EID+ +P K + GFT ER+
Sbjct: 59 DYLTKLDNHKPVIVCGDMNVAHKEIDLKNP---------------KNNMKNAGFTKEERE 103
Query: 184 RFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIA 243
+F +L G ID YR+ + +K+ + WS + RIDYF S++L+DR+I+
Sbjct: 104 KFSKLLDSG-FIDTYRYFNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLIS 161
Query: 244 CEMQGHGIELEGFYGSDHCPVSLEL 268
++ + GSDHCPV LE+
Sbjct: 162 ADIHTEVL------GSDHCPVELEI 180
>gi|426200016|gb|EKV49940.1| hypothetical protein AGABI2DRAFT_190373 [Agaricus bisporus var.
bisporus H97]
Length = 326
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 35/233 (15%)
Query: 45 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 103
+WS++ K Y+GTA+L K +P V+ +L GR+I EFE +YL+ TY N
Sbjct: 114 YWSISSKKSYSGTAILSK--HKPLSVTKTLPNHPNPDLVKGRIITLEFEGYYLIGTYVVN 171
Query: 104 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162
G E + + +++W++ + ++ KP+IW GDLNV+ ID+++
Sbjct: 172 AG--VELKTLEDKKEWNQHFENYIRDLDKVKPVIWTGDLNVAPTAIDLAN---------- 219
Query: 163 GYVPPNKEDWGQ-PGFTIAERKRFGAIL------KEGRLIDAYRFLHKEKDMDCGFSWSG 215
K +W + PG+T AE F IL G+ +D +R LH + FS+
Sbjct: 220 -----AKRNWNKTPGYTEAETTSFKNILDPPEDVDAGKFVDVWRQLHPKDQHYTYFSYRF 274
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
N + +G R+D F++SE + +R+ CE++ E + SDHCPV +E+
Sbjct: 275 N--CRLKGLGWRLDMFVLSERIAERVKMCEIRS-----EIYGASDHCPVVVEV 320
>gi|420469789|ref|ZP_14968500.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
gi|393086835|gb|EJB87505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
Length = 250
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK + + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTCL------KDALIYKDILGSDHCPVGLEL 249
>gi|329895423|ref|ZP_08271004.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
gi|328922306|gb|EGG29652.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
Length = 256
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 131/256 (51%), Gaps = 41/256 (16%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 77
+TKA ++ L + L Y+++ + A+ K Y+GTA++ + +P +S + +
Sbjct: 35 ETKAQDDQVLEALTELDPA----YKVFSNSAEKKGYSGTAIITR--VEP--ISVTADMGM 86
Query: 78 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLI 136
+++ +GRV+ AEFETFYL+ Y PN+G E R+ WDK +++ KP++
Sbjct: 87 PEHDTEGRVLCAEFETFYLVTVYTPNSG--SELKRLDYRQSWDKDFADYLKTLEQTKPVV 144
Query: 137 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEGRLI 195
CGDLNV+H++ID++ P K+++ + G+ AE F ++ G +
Sbjct: 145 VCGDLNVAHQDIDLARP---------------KQNYNKSAGYMQAEIDGFDRLVDLG-FV 188
Query: 196 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIEL 253
D YR + +SW G R K + RIDYF+V+ EL + E+
Sbjct: 189 DTYRHFNPNT---AKYSWWSYRAGA-REKNIGWRIDYFLVTPELTSSLTGAEI------Y 238
Query: 254 EGFYGSDHCPVSLELS 269
YGSDHCPV +++S
Sbjct: 239 NDVYGSDHCPVGIDIS 254
>gi|182413315|ref|YP_001818381.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
gi|177840529|gb|ACB74781.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
Length = 253
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 113/230 (49%), Gaps = 39/230 (16%)
Query: 45 WWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 104
W+S Y+GTAL + P KV+F + ++ +GRVI AEF F+L+N Y PN+
Sbjct: 56 WYSAVKKGYSGTALFTR--VAPLKVNFGIGLPG--HDDEGRVITAEFADFFLVNVYQPNS 111
Query: 105 GWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162
+ R +WD F+ L+ GKP+++CGDLNV+H+EID+++P
Sbjct: 112 QRGLTRLKY-RTEEWDPAFLAFLKKLEKKGKPVVFCGDLNVAHQEIDLTNP--------- 161
Query: 163 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYR 222
K + GFT ER F +L G +D +R EK WS + R
Sbjct: 162 ------KTNRRNAGFTDEERANFSKLLASG-FVDTFREF--EKGPGHYTWWSQMMNCRAR 212
Query: 223 GKRMRIDYFIVSEELKDRI----IACEMQGHGIELEGFYGSDHCPVSLEL 268
R+DYF+ SE+LK + I+ E+ GSDHCPV LEL
Sbjct: 213 NIGWRVDYFVASEKLKPALKRAWISPEVM----------GSDHCPVGLEL 252
>gi|402846244|ref|ZP_10894559.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402268322|gb|EJU17703.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 250
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 131/270 (48%), Gaps = 33/270 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A +K P +EL D +E K+ + + P +Y +W+ A K Y+GTA+
Sbjct: 11 LRAVFTKGFPDIIKELDADFVCLQETKMQAGQLDADLP--SYISYWNYAVKKGYSGTAIY 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P VS+ + +++ +GRVI E+ F+L+ Y PN+ +++ R W
Sbjct: 69 TRH--EPLSVSYGIGIE--EHDQEGRVITLEYPEFFLVTVYTPNS--QDDLRRLDYRMTW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + ++ K P+I CGDLNV+H+EID+ +P K + GFT
Sbjct: 123 EDAFRSYLKGLDAKKPVIICGDLNVAHKEIDLKNP---------------KSNRRNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER + +L G ID +R+ + ++ D WS + R RIDYF+ SE L
Sbjct: 168 DEERGKLQELLDAG-FIDTFRYFYPDQ-ADIYSWWSYRFKARERNSGWRIDYFVASERLA 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R +QG I E YGSDHCPV L L
Sbjct: 226 PR-----LQGAAIHTE-IYGSDHCPVELIL 249
>gi|391340077|ref|XP_003744372.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Metaseiulus occidentalis]
Length = 347
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 35/238 (14%)
Query: 37 PP----FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF 91
PP +K Y+ ++ D + Y+G ++ +K + SLE+ ++ +GRVI EF
Sbjct: 138 PPEVTNYKGYKSYFLAGDKEGYSGVGIMSRKTPLNVEYGLSLEE----HDSEGRVITLEF 193
Query: 92 ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV 150
E F+L+N+Y PN G R WD+ +++++ K +I GDLNV+H EID+
Sbjct: 194 EEFFLVNSYVPNAG--RGLVRLDYRLTWDRDFRKYLVGLKKKKSVILTGDLNVAHNEIDL 251
Query: 151 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 210
+P+ NK++ GFT ER+ +L+EG +D +R L+ E++
Sbjct: 252 KNPK------------TNKKN---AGFTEEERQGLTDLLEEG-FVDTFRKLYPEREGAYT 295
Query: 211 FSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
F W+ + + R+DYFIVSE+L D +I E++ GSDHCPV L L
Sbjct: 296 F-WTYMMNARAKNVGWRLDYFIVSEDLIDNVIDNEIRST------VMGSDHCPVVLHL 346
>gi|294674336|ref|YP_003574952.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
gi|294473057|gb|ADE82446.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
Length = 249
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 34/234 (14%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
F+ Y+ +W+ A+ K Y+GTA+ K P V++ + +++ +GRVI E E FYL
Sbjct: 46 AFEGYESYWNYAEKKGYSGTAIFTKH--HPLSVTYGIGID--EHDHEGRVITLEMEDFYL 101
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN+ ++ R W+ + ++ K P+I CGDLNV+H+EID+ +P+
Sbjct: 102 VTCYTPNS--QDGLKRLDYRMTWENDFRAYLKGLDAKKPVILCGDLNVAHQEIDLKNPK- 158
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 214
++N GFT ER++F +L G D++R+ + E+ +S WS
Sbjct: 159 --TNRMNA------------GFTDQEREQFSTLLASG-FTDSFRYKYPEQ---VTYSWWS 200
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF++S+ L++R+ + + GSDHCPV L L
Sbjct: 201 YRFQARQKNAGWRIDYFVISDRLRERMDDARIHTQIL------GSDHCPVELTL 248
>gi|409082189|gb|EKM82547.1| hypothetical protein AGABI1DRAFT_111155 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 326
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 35/233 (15%)
Query: 45 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 103
+WS++ K Y+GTA+L K +P V+ +L GR+I EFE +YL+ TY N
Sbjct: 114 YWSISSKKSYSGTAILSK--HKPLSVTKTLPNHPNPDLVKGRIITLEFEGYYLIGTYVVN 171
Query: 104 NGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162
G E + + +++W++ + ++ KP+IW GDLNV+ ID+++
Sbjct: 172 AG--VELKTLEDKKEWNQHFENYIRDLDKVKPVIWTGDLNVAPTAIDLAN---------- 219
Query: 163 GYVPPNKEDWGQ-PGFTIAERKRFGAIL------KEGRLIDAYRFLHKEKDMDCGFSWSG 215
K +W + PG+T AE F IL G+ +D +R LH + FS+
Sbjct: 220 -----AKRNWNKTPGYTEAETSSFKNILDPPEDVDAGKFVDVWRQLHPKDQHYTYFSYRF 274
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
N + +G R+D F++SE + +R+ CE++ E + SDHCPV +E+
Sbjct: 275 N--CRLKGLGWRLDMFVLSERIAERVKMCEIRS-----EIYGASDHCPVVVEV 320
>gi|375091411|ref|ZP_09737704.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
gi|374563511|gb|EHR34824.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
Length = 250
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 128/231 (55%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ + Y+GTA+ K+ +P S+ + +++ +GRVI E+E FYL+ Y
Sbjct: 50 YHEFYNYAERRGYSGTAIFTKE--EPLSHSYGI--GIEEHDKEGRVITLEYEDFYLVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K R+ W+ + ++L+ + KP+I CGDLNV+H+EID+++P
Sbjct: 106 TPNS--KRGLLRLDYRQVWEDDFRNYLLKLNKTKPVILCGDLNVAHKEIDLANP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G ID +R+ + D+ +SW + I
Sbjct: 158 ---------KSNRRNAGFTDEERQKFTELLDAG-FIDTFRYFY--PDIPEMYSW-WSYIT 204
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K R + + RIDYF+VSE+ +DR++ + +E E GSDHCPV L L
Sbjct: 205 KARERNVGWRIDYFVVSEDFEDRLLDASIH---MEQE---GSDHCPVVLYL 249
>gi|352683918|ref|YP_004895902.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
gi|350278572|gb|AEQ21762.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
Length = 258
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 134/269 (49%), Gaps = 33/269 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A +K ++ ++L D + +E K+ R +S F Y +W+ A K Y+GTA+
Sbjct: 18 LRACMNKGFKESMEKLDADIISIQETKM--QREQASFDFPGYYEYWNSAVKKGYSGTAIF 75
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V++ L +++ +GRVI AE++ FYL+N Y PN+ + E R W
Sbjct: 76 SR--IKPLSVTYGL--GIEEHDQEGRVITAEYDDFYLVNVYTPNS--QRELARLSYRMAW 129
Query: 120 DKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ Q + S K I CGD+NV+HE ID+ +P+ + GF+
Sbjct: 130 EDAFQAYCEDLSKKKTTIVCGDMNVAHEPIDLKNPD---------------SNHHNAGFS 174
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER++ A L G +D++R L+ +++ + WS + R RIDYF+VSE +
Sbjct: 175 DEERQKLDAFLARG-FVDSFRMLYPDREGAYTW-WSYMFKARERNAGWRIDYFLVSEAGR 232
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLE 267
D+I + + GSDHCPV LE
Sbjct: 233 DKIRDVTI------MNEIMGSDHCPVVLE 255
>gi|403669653|ref|ZP_10934844.1| exodeoxyribonuclease [Kurthia sp. JC8E]
Length = 253
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A K Y+GTA+ K P V + + + E +GR+I E+E FY++ Y
Sbjct: 50 YEQYWNYALKKGYSGTAIFTKHT--PLSVKYGVGDH--ETEDEGRIITLEYENFYVVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K + + R W+ ++ ++ Q KP+I+CGDLNV+HEEID+ +
Sbjct: 106 TPNS--KRDLARLEERLVWEDDLRVYLQQLDAQKPVIYCGDLNVAHEEIDLKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G GFT ER + +L G D++R HK F+W + +
Sbjct: 158 ---------KSNVGNSGFTDGERSKMTLLLNSG-FTDSFR--HKYPTESNRFTW-WSYMN 204
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K R + + RIDYFIVS+ L +I E+ + GSDHCP++L L
Sbjct: 205 KVRERNIGWRIDYFIVSDRLVPQIETAEIHDQQL------GSDHCPIALTL 249
>gi|291543155|emb|CBL16265.1| exodeoxyribonuclease III [Ruminococcus bromii L2-63]
Length = 252
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W AD K Y+GTA+ K+ +P V + + +++ +GRVI AEF+ +++
Sbjct: 48 LEGYHQYWCYADKKGYSGTAMFTKE--EPLNVCYGI--GIDEHDHEGRVITAEFDNCFVV 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ + E R KW+ + ++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 104 TCYTPNS--QSELKRLDYRMKWEDDFKAYLKKLEEKKPVIMCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER + A+L +G ID YR+ + D + +S WS
Sbjct: 159 ------------KTNRKNAGFTDEERSKMTALLDDG-FIDTYRYFY--PDTEGVYSWWSY 203
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYFIVS+ L+ + + G I E GSDHCPV L +
Sbjct: 204 RFKAREKNAGWRIDYFIVSKALESK-----LDGAKIHTE-ILGSDHCPVELTI 250
>gi|224137778|ref|XP_002322649.1| predicted protein [Populus trichocarpa]
gi|222867279|gb|EEF04410.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 33/228 (14%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+W+ +++K Y+GTA++ + +P V + L ++ +GRV+ AEF++FYL+NTY P
Sbjct: 228 FWTCSNAKLGYSGTAIVSR--IKPLSVCYGL--GIPDHDSEGRVVTAEFDSFYLVNTYVP 283
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N+G + S+ R +WD + ++ + KP+I GDLN +H+EID+ +P A K
Sbjct: 284 NSGDGLKRLSY-RITQWDPSLSNYMKELEKSKPVILTGDLNCAHQEIDIFNP---AGNKR 339
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 220
+ GFT ER+ FG+ L+D +R H G++ W G+
Sbjct: 340 SA------------GFTEEERQSFGSNFLSKGLVDTFRKQHPNV---VGYTYWGYRHGGR 384
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K R+DYF+VSE + D++ + + GSDHCP+ L L
Sbjct: 385 KTNKGWRLDYFLVSESIADKVHDSYI------VPDVNGSDHCPIGLVL 426
>gi|302787589|ref|XP_002975564.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
gi|300156565|gb|EFJ23193.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
Length = 306
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 33/226 (14%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+W+ + SK Y+G AL+ + +P V++ L + +++ +GRV+ AEF+TF+L++ Y P
Sbjct: 104 FWTCSSSKLGYSGCALISR--IKPVSVTYGLGIS--QHDGEGRVVTAEFDTFFLVSVYVP 159
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N+G + E ++ R +WD ++L+ KP+I GDLN +HEEID+ P+
Sbjct: 160 NSGQRLERLTY-RTTEWDPAFSTYLLELEKRKPVIVTGDLNCAHEEIDIYDPD------- 211
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 220
NK GFT ER F + L+D +R K+ + GF+ WS +
Sbjct: 212 -----GNKR---SAGFTCEERTSFQTNFIDKGLVDTFR---KQHPLAVGFTYWSYRSNAR 260
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ K R+DYF+VS+ L + L GSDHCP+ L
Sbjct: 261 PQNKGWRLDYFLVSQGLVSNV------ADSYVLPQLDGSDHCPIGL 300
>gi|373501432|ref|ZP_09591789.1| exodeoxyribonuclease [Prevotella micans F0438]
gi|371949088|gb|EHO66962.1| exodeoxyribonuclease [Prevotella micans F0438]
Length = 250
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 123/236 (52%), Gaps = 38/236 (16%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y+ +W+ A+ K Y+GTA+ K ++P V++ + +++ +GR+I E E F+L+
Sbjct: 47 FPGYESYWNYAEKKGYSGTAIFTK--YKPLSVTYGMNID--EHDHEGRIITLEMEQFFLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEF 155
Y PN+ ++ R +W+ ++ L C KP+I CGD+NV+HEEID+ +P+
Sbjct: 103 TVYTPNS--QDGLRRLDYRMQWESDFLAYLTSLDCR-KPVIVCGDMNVAHEEIDLKNPQ- 158
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
N+ + GFT ER++ +L G +D +R LH E+ +SW
Sbjct: 159 -----------NNRRN---AGFTDEERQKMTTLLASG-FVDTFRTLHPEEQ---KYSWWS 200
Query: 216 NPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
K R K + RIDYF++SE L +++ + GSDHCPV L L+
Sbjct: 201 YRF-KAREKNVGWRIDYFLISERLVPQLVEATIHAE------IMGSDHCPVELVLN 249
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 128/245 (52%), Gaps = 35/245 (14%)
Query: 30 LMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL 88
+ R+ S F Y +W+ A+ K Y+GT +L K + +S + ++ +GR+I+
Sbjct: 38 MHRSQSDFVFDGYYQFWNEAEKKGYSGTIILSK----TEPLSVCNDMGIAHHDKEGRIIV 93
Query: 89 AEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEE 147
AE+ TF+L+N Y PN+ K E R++W+ + F+ KP+I CGDLNV+H+E
Sbjct: 94 AEYATFFLVNVYTPNS--KRELERLTYRQEWEDDFRSFLKGLEQYKPVIVCGDLNVAHKE 151
Query: 148 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 207
ID+ +P K + GFT ER++ +L G ID+YR+ + +K+
Sbjct: 152 IDLKNP---------------KTNRRNAGFTDEEREKMSVLLDSG-FIDSYRYFYPDKEH 195
Query: 208 DCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVS 265
++W + +GK R RIDYF++S R +A ++ I E GSDHCPV
Sbjct: 196 --AYTW-WSYMGKARQNNTGWRIDYFLLS-----RCLAKNLKEAHIYPE-IMGSDHCPVG 246
Query: 266 LELSE 270
+ + E
Sbjct: 247 IVIDE 251
>gi|291546831|emb|CBL19939.1| exodeoxyribonuclease III [Ruminococcus sp. SR1/5]
Length = 251
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ + Y+GTA+ K+ +P ++ + +++ +GRVI EF+ +Y + Y
Sbjct: 50 YHQYWNYANRRGYSGTAIFTKR--EPLSAAYGI--GIEEHDKEGRVITLEFDEYYFVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E + R KW++ ++L+ KP+I CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QSELRRLEYRMKWEEDFLAYLLKLQEKKPVICCGDLNVAHQEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER F L+ G ID +R+ + +K+ + WS
Sbjct: 158 ---------KTNRKNAGFTDEERACFTRALESG-FIDTFRYFYPDKEGVYSW-WSYRFRA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+VS LK+++ ++ G + GSDHCPV L++
Sbjct: 207 REKNAGWRIDYFLVSPSLKEKLQDAKIHGEIM------GSDHCPVELDI 249
>gi|227874120|ref|ZP_03992326.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
gi|227840032|gb|EEJ50456.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
Length = 254
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
+Q W Y+GTA+ K+ +P V + + +++ +GRVI E+ FYL+ Y
Sbjct: 54 FQYWNYAVKKGYSGTAIFTKE--EPLSVQYGI--GVEEHDQEGRVITLEYPEFYLITVYV 109
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ + E R K++ ++L K P+I+CGDLNV+HEEID+ +P+ +
Sbjct: 110 PNS--QGELKRLPYRMKFEDAFLNYILTLEKKKPVIYCGDLNVAHEEIDLKNPD---SNH 164
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
+N GF+ ER +F +L G L D++R + K+ + + WS +
Sbjct: 165 MNA------------GFSDEERAKFSRVLDSGYL-DSFRHFYPNKEEEYSW-WSYRTKAR 210
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
R RIDYF+VS++L+ ++++ + + GSDHCPV + L
Sbjct: 211 DRNVGWRIDYFVVSKQLEKKLLSASIHQEVM------GSDHCPVEITL 252
>gi|417838439|ref|ZP_12484677.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761982|gb|EGP13251.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 275
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 36/239 (15%)
Query: 39 FKNYQIWWSLADSK----YAGTALLVKKCFQPKKVSFSL-EKTALKYEPDGRVILAEFET 93
F NY W ++ YAGT L K P+ ++ + YE GR++ EF+
Sbjct: 64 FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTKPAIGAPDTMDYE--GRILTLEFDN 121
Query: 94 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSH 152
+Y+ Y PN+G E + R+ WD++ E++ + GKP+I GD NV+H ID+ H
Sbjct: 122 YYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQKLDKGKPVIASGDYNVAHTPIDLKH 179
Query: 153 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 212
PE + GFT ER+ F +LK G D +R +H +++ +S
Sbjct: 180 PE---------------NNHHNAGFTDEERQDFDKLLKLG-FTDTFRKVH--GNIEGVYS 221
Query: 213 WSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W + K RIDY+IVS+ + D++ EM G DHCP+ LE++
Sbjct: 222 WWAQRVRTSKANNSGWRIDYYIVSDRIADQVTKSEMIDTGER------KDHCPIMLEIN 274
>gi|386746941|ref|YP_006220158.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
gi|384553190|gb|AFI08138.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
Length = 250
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINME--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEEREKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK + + + GSDHCPV LEL
Sbjct: 204 QQARDKDIGWRIDYFLCSNPLKTCL------KDALIYKDILGSDHCPVGLEL 249
>gi|359412352|ref|ZP_09204817.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
gi|357171236|gb|EHI99410.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
Length = 252
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A+ K Y+GTA+ K+ +P V + + +++ +GRVI EF+ FYL+N Y
Sbjct: 51 YKDYWNYAEKKGYSGTAVFTKE--EPISVKNGIGIS--EHDTEGRVITLEFKEFYLVNVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K+ R W+ ++++ + KP+I CGDLNV+HE+ID+ +P
Sbjct: 107 TPNS--KQGLERLDYRMVWEDVFRKYLKELEEKKPVIICGDLNVAHEDIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKD-MDCGFSWSGNPI 218
K + GFT ER + +L+ G ID YR+ + + + +S+ N
Sbjct: 159 ---------KANRKNAGFTDEERNKISELLEAG-FIDTYRYFYPNTEGVYSWWSYRFNAR 208
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
G G RIDYF+ SE LKD+++ ++ + + GSDHCPV + ++
Sbjct: 209 GNNAG--WRIDYFLASESLKDKLVDAKIHMNVM------GSDHCPVEVMVN 251
>gi|167771017|ref|ZP_02443070.1| hypothetical protein ANACOL_02371 [Anaerotruncus colihominis DSM
17241]
gi|167666687|gb|EDS10817.1| exodeoxyribonuclease III [Anaerotruncus colihominis DSM 17241]
Length = 250
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
YQ +W+ A+ K Y+GTA+ + P V++ + +++ +GRVI E+E FYL+N Y
Sbjct: 50 YQQFWNSAEKKGYSGTAVFTR--VPPLNVTYGIGMA--EHDSEGRVITVEYEPFYLVNCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN + E + R KW+ + +++ K P++ CGDLNV+H+EID+ +P
Sbjct: 106 TPNA--QRELARLEYRMKWEDDFRAYLMSLDAKKPVVLCGDLNVAHQEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GF+ ER + +L G +D +R L+ D+ ++ WS
Sbjct: 158 ---------KTNRRNAGFSDEERAKMTELLAGG-FVDTFRALY--PDVTGAYTWWSYLRR 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFIVSE L+ + ++ + GSDHCPV L+L
Sbjct: 206 ARDTNAGWRIDYFIVSERLRGAVHDSRIRADVM------GSDHCPVELDL 249
>gi|225420139|ref|ZP_03762442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
gi|225041196|gb|EEG51442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
Length = 251
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K+ +P V + L +++ +GRVI AEF+ ++++ Y
Sbjct: 51 YHQYWNYAQKKGYSGTAMFTKE--EPVSVRYGL--GIEEHDMEGRVIAAEFQEYFVVTCY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ ++ R +W+ ++ + KP+I+CGDLNV+H+EID+ +P
Sbjct: 107 TPNS--QDGLARLDYRMEWENAFLAYLKKLEEEKPVIFCGDLNVAHKEIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER +F +L G ID +R+ + +++ + WS
Sbjct: 159 ---------KSNRKNAGFTDEERGKFTDLLGAG-FIDTFRYFYPDREGIYSW-WSYRFSA 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF SE LKDR+++ ++ + GSDHCPV L +
Sbjct: 208 RAKNAGWRIDYFCASESLKDRLVSADIHTEVM------GSDHCPVELVI 250
>gi|194466723|ref|ZP_03072710.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194453759|gb|EDX42656.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 253
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 35/234 (14%)
Query: 38 PFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
PF+ NY +W+ A+ K Y+GTA+ K ++P+ V + + + ++ +GR+I E+ F
Sbjct: 44 PFQIPNYYQYWNYAEKKGYSGTAIFTK--YKPENVIYGMNNSI--FDKEGRLITLEYPNF 99
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
YL++ Y P +G E+ R WD+ ++V S KP+I GD++V+++ ID++ P
Sbjct: 100 YLIDVYVPVSG--EKLQHLDYRLDWDRAFLDYVTNLQSSKPVIIGGDMSVAYQPIDLAEP 157
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS- 212
ED + GFT ER FG +L G L D +R+LH ++ ++
Sbjct: 158 ---------------TEDHHKAGFTKQERSDFGKLLDAG-LTDTFRYLH--PNLHGAYTW 199
Query: 213 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
WS + R R+DYF+VS+ K+RI ++ L GS HCP+ L
Sbjct: 200 WSYRYDARERNVGWRLDYFLVSDVWKERIEEAKI------LSDVKGSSHCPIEL 247
>gi|238018561|ref|ZP_04598987.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
gi|237865032|gb|EEP66322.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
Length = 251
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 33/270 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMR-ALSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA +K ++ EL D +E KL + +L P ++ Y W S Y+GTA+
Sbjct: 11 LRAAVTKGFMESFNELDADIFCLQETKLQPDQISLELPGYEQY--WNSAVKKGYSGTAVF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V+ + +++ +GRVI AE++ FYL+ Y PN+ + E + R W
Sbjct: 69 TR--IKPLSVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLEYRMAW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + ++L+ K P+I CGDLNV+H+EID+ +P K + GF+
Sbjct: 123 EDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNP---------------KTNRKNAGFS 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER + +L G D +R L+ + + + WS + R RIDYFI S+ L
Sbjct: 168 DEERAKMTELLGAG-FTDTFRHLYPDAIEEYSW-WSYMGKARERNTGWRIDYFITSKRLD 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
D+I ++ + +GSDHCPV L++
Sbjct: 226 DKIQEAKIH------QQIFGSDHCPVELDI 249
>gi|160947302|ref|ZP_02094469.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
gi|343520435|ref|ZP_08757404.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
gi|158446436|gb|EDP23431.1| exodeoxyribonuclease III [Parvimonas micra ATCC 33270]
gi|343397393|gb|EGV09927.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
Length = 250
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +++ A K Y+GTA+ K F+P V + + +++ +GR+I E++ F+L+ Y
Sbjct: 50 YETFYNYAQRKGYSGTAIFTK--FKPLSVKYGMGME--EHDNEGRLITLEYDDFFLVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K+E R W+ + ++L + K +I CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--KQELLRLDYRMVWEDAFRNYLLDLNKTKSVIVCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++ +L G D +R+ + +K+ + + WS
Sbjct: 158 ---------KTNRKNAGFTDEEREKMSILLDSG-FTDTFRYFYPDKENEYSW-WSYFGKS 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+ S+++ DR++ ++ + GSDHCPV LE+
Sbjct: 207 RERNTGWRIDYFLTSKDMDDRLVDAQIH------QSILGSDHCPVYLEI 249
>gi|383754456|ref|YP_005433359.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366508|dbj|BAL83336.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 250
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 129/256 (50%), Gaps = 33/256 (12%)
Query: 15 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 73
+L D +E K+ +A+ P Y+ +W+ A+ K Y+GTA+ + +P V++ L
Sbjct: 25 KLDADVFCLQETKMQPEQAILDLP--GYKQYWNSAEKKGYSGTAVFSR--IEPLHVTYGL 80
Query: 74 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-G 132
+++ +GRVI EF +L+ Y PN+ K E R +W+ + ++++
Sbjct: 81 --GIEEHDHEGRVITLEFPEMFLVTVYTPNS--KRELERLAYRMEWEDAFRAYLMKLDEQ 136
Query: 133 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 192
KP+I CGDLNV+H+EID+ +P K + GFT ER +FG +L G
Sbjct: 137 KPVIVCGDLNVAHQEIDLKNP---------------KTNHHNAGFTDEERGKFGELLDAG 181
Query: 193 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 252
ID +R L+ ++ + WS + RIDYF+ S+ L+++I +
Sbjct: 182 -FIDTFRTLYPDRTGIYTW-WSYLRKARDNNAGWRIDYFVASKRLQEKIQDATIHNE--- 236
Query: 253 LEGFYGSDHCPVSLEL 268
+GSDHCPV LEL
Sbjct: 237 ---IFGSDHCPVGLEL 249
>gi|303229843|ref|ZP_07316620.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|303231217|ref|ZP_07317955.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302514124|gb|EFL56128.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302515473|gb|EFL57438.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 251
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 136/272 (50%), Gaps = 37/272 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA +K + EL D +E KL + L P ++ Q W S Y+GTA+
Sbjct: 11 LRAAVTKGFIDSFNELDADIFCLQETKLQPHQIELELPGYE--QFWNSAVKKGYSGTAVF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V+ + +++ +GRVI AE++ FYL+ Y PN+ + E R W
Sbjct: 69 TR--IKPIAVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + ++L+ K P+I CGDLNV+H EID+ +P K + GF+
Sbjct: 123 EDAFRAYLLELDKKKPVILCGDLNVAHNEIDLKNP---------------KTNRKNAGFS 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEE 236
ER + +L+ G D +R+L+ D +SW + +GK R + + RIDYFI S+
Sbjct: 168 DEERAKMTELLESG-FTDTFRYLY--PDAVDEYSW-WSYMGKARDRNVGWRIDYFITSKR 223
Query: 237 LKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
L D+I ++ + +GSDHCPV L++
Sbjct: 224 LDDKIKEAKIH------QQIFGSDHCPVELDI 249
>gi|392947967|ref|ZP_10313585.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
gi|392436819|gb|EIW14725.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
Length = 254
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 117/233 (50%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F YQ +W+ A+ K Y+GTA+ K P V++ + +++ +GRVI E+ +Y+L
Sbjct: 47 FPGYQQYWNYAERKGYSGTAIFTKHT--PLNVTYGI--GVPEFDTEGRVITLEYADYYVL 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+G E R+ W+ ++ S KPLI+CGDLNV+HE ID+ +
Sbjct: 103 TCYTPNSG--GELKRLDYRQHWEDAFLTYINSLSANKPLIFCGDLNVAHENIDLKNW--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR-FLHKEKDMDCGFSWSG 215
+ + GFT ER +F +L G D +R F + D+ +S+ G
Sbjct: 158 ------------RSNHHSAGFTDEERGKFDRLLANG-YTDTFRHFYPDQTDIYSWWSYRG 204
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ G RIDYFI S++L +++ + L +GSDHCPV L++
Sbjct: 205 HARDNNSG--WRIDYFITSQQLDGQLLNARI------LNDVFGSDHCPVELDI 249
>gi|429759794|ref|ZP_19292289.1| exodeoxyribonuclease III [Veillonella atypica KON]
gi|429179014|gb|EKY20276.1| exodeoxyribonuclease III [Veillonella atypica KON]
Length = 251
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 136/272 (50%), Gaps = 37/272 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA +K + EL D +E KL + L P ++ Q W S Y+GTA+
Sbjct: 11 LRAAVTKGFIDSFNELDADIFCLQETKLQPHQIELELPGYE--QFWNSAVKKGYSGTAVF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V+ + +++ +GRVI AE++ FYL+ Y PN+ + E R W
Sbjct: 69 TR--IKPIAVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + ++L+ K P+I CGDLNV+H EID+ +P K + GF+
Sbjct: 123 EDAFRAYLLELDKKKPVILCGDLNVAHNEIDLKNP---------------KTNRKNAGFS 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEE 236
ER + +L+ G D +R+L+ D +SW + +GK R + + RIDYFI S+
Sbjct: 168 DEERAKMTELLESG-FTDTFRYLY--PDAVDEYSW-WSYMGKARDRNVGWRIDYFITSKR 223
Query: 237 LKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
L D+I ++ + +GSDHCPV L++
Sbjct: 224 LDDKIKEAKIH------QQIFGSDHCPVELDI 249
>gi|313894410|ref|ZP_07827975.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441234|gb|EFR59661.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
Length = 251
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 133/270 (49%), Gaps = 33/270 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMR-ALSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA +K ++ EL D +E KL + +L P ++ Y W S Y+GTA+
Sbjct: 11 LRAAVTKGFMESFNELDADIFCLQETKLQPEQISLELPGYEQY--WNSAVKKGYSGTAVF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V+ + +++ +GRVI AE++ FYL+ Y PN+ + E + R W
Sbjct: 69 TR--IKPLSVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLEYRMAW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + ++L+ K P+I CGDLNV+H+EID+ +P K + GF+
Sbjct: 123 EDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNP---------------KTNRKNAGFS 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER + +L G D +R L+ + + WS + R RIDYFI S+ L
Sbjct: 168 DEERAKMTELLGAG-FTDTFRHLYPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLD 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
D+I ++ + +GSDHCPV L++
Sbjct: 226 DKIQEAKIH------QQIFGSDHCPVELDI 249
>gi|260909404|ref|ZP_05916112.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
gi|260636496|gb|EEX54478.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
Length = 249
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 119/233 (51%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y+ +W+ AD K Y+GTA+ + +P V++ + +++ +GRVI E TF+L+
Sbjct: 47 FDGYESFWNYADKKGYSGTAIYTRH--KPLNVTYGIGID--QHDHEGRVITLEMPTFFLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++E R +W+ Q ++ KP+I CGD+NV+H+EID+ +P
Sbjct: 103 TVYTPNS--QDELRRLDYRMQWEDDFQAYLHDLDKRKPVIVCGDMNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G D +R+ + E + +S WS
Sbjct: 158 ------------KTNRRNAGFTDEERQKMTQLLGAG-FTDTFRWKYPE---EITYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VS+ L+ ++ ++ GSDHCPV LEL
Sbjct: 202 RFKARERNTGWRIDYFLVSDRLQSEVLDAKIH------TDILGSDHCPVELEL 248
>gi|335047397|ref|ZP_08540418.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761205|gb|EGL38760.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 250
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +++ A K Y+GTA+ K + P V + + +++ +GR+I E+E F+L+ Y
Sbjct: 50 YETYYNYAQRKGYSGTAIFTK--YTPLSVKYGM--GIEEHDNEGRLITLEYEDFFLVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K+E R W+ + ++L+ + K +I CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--KQELLRLDYRMVWEDAFRNYLLELNKTKSVIVCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++ +L G D +R+ + +K+ + + WS
Sbjct: 158 ---------KTNRKNAGFTDQEREKMSILLDSG-FTDTFRYFYPDKENEYSW-WSYFGKS 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+ S+++ DR++ ++ + GSDHCPV LE+
Sbjct: 207 RERNTGWRIDYFLTSKDMDDRLVDAQIH------QRILGSDHCPVYLEI 249
>gi|410918464|ref|XP_003972705.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Takifugu
rubripes]
Length = 314
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 133/253 (52%), Gaps = 36/253 (14%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKT 76
+TK + + + ++ PFK +W+ +D K Y+G A+L K +P KV++ + K
Sbjct: 93 ETKCAEKSLPADITSMPEYPFK----YWAGSDDKEGYSGVAMLSKT--EPIKVTYGIGKE 146
Query: 77 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPL 135
+++ +GRVI AEF +F+L+ Y PN+G R+ WD + ++ + KP+
Sbjct: 147 --EHDKEGRVITAEFSSFFLVTVYVPNSG--RGLVRLDYRKTWDVDFRTYLSELDIQKPV 202
Query: 136 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 195
+ CGDLNV+H+EID+ +P+ NK++ GFT ER+ F +L+ G +
Sbjct: 203 VLCGDLNVAHQEIDLKNPK------------GNKKN---AGFTAEEREGFSQLLEAG-FV 246
Query: 196 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 255
D++R L+ E+ F W+ + + R+DYF++S L + +++
Sbjct: 247 DSFRELYPEQTHAYSF-WTYMMNARDKNVGWRLDYFVLSSSLLPALCDSKIRNQ------ 299
Query: 256 FYGSDHCPVSLEL 268
GSDHCP++L +
Sbjct: 300 VRGSDHCPITLHI 312
>gi|420407656|ref|ZP_14906820.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
gi|393021114|gb|EJB22248.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
Length = 250
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P VS+ + +++ +GRV+ EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVSYGINID--EHDKEGRVVTCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFNELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK + + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLK------TLLKDALIYKDILGSDHCPVGLEL 249
>gi|317133644|ref|YP_004092958.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
gi|315471623|gb|ADU28227.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
Length = 256
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 31/237 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F YQ +W+ A+ K Y+GTA+ + P V + + + ++ +GRVI E E F+L+
Sbjct: 47 FDGYQSFWNSAEKKGYSGTAVFTR--VPPLSVRYDMGEP--EHTGEGRVITVESEAFFLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + + R +W+ + ++L + KP++ CGD+NV+H EID+ +P
Sbjct: 103 NVYTPNS--QRDLVRLDYRMRWEDAFRAYLLTLNRDKPVVVCGDMNVAHREIDIKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER++ +L+ G ID +R L+ E+ D WS
Sbjct: 158 ------------KSNIHNAGFTPEERQKMTDLLEAG-FIDTFRALYPEQK-DAYTWWSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 273
+ R RIDYF+VS+ L+ ++ + GSDHCPV L L S
Sbjct: 204 RKARERNAGWRIDYFLVSDRLRGQVEDSTIYAD------VPGSDHCPVGLLLHTGGS 254
>gi|283769444|ref|ZP_06342342.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
gi|283103969|gb|EFC05354.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
Length = 251
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 134/254 (52%), Gaps = 37/254 (14%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE-KT 76
D A +E K+ + S F+ Y + + A+ K Y+GT + K+ +P V + +E T
Sbjct: 29 DVFALQETKMQADQITSEMEFEGYYRYMNSAERKGYSGTMVYCKE--EPISVQYDIEGDT 86
Query: 77 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPL 135
++ +GRVI E+ +Y + Y PN+ KE R +W+ R+++ + + KP+
Sbjct: 87 SM----EGRVITLEYPNYYFVTAYVPNS--KEGLARLGFRMEWEDRLRDHLNRLKEVKPV 140
Query: 136 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 195
I+ GDLNV+HEEID+ +P+ + PGF+ ER++ +L +G I
Sbjct: 141 IYTGDLNVAHEEIDLKNPQ---------------SNHKNPGFSDEERQKMTELLADG-YI 184
Query: 196 DAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 254
D++R+L+ + + +S WS + R RIDYFIVSE LK+++ + + +
Sbjct: 185 DSFRYLYPK---EVKYSWWSYRAAARERNVGWRIDYFIVSENLKEKV------KNALIDD 235
Query: 255 GFYGSDHCPVSLEL 268
GSDHCP+ LE+
Sbjct: 236 EVKGSDHCPIELEM 249
>gi|150017217|ref|YP_001309471.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
gi|149903682|gb|ABR34515.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 123/231 (53%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ K +E+ ++ +GRV+ E+ FYL+N Y
Sbjct: 53 YTSYWNYAEKKGYSGTAVFTKEEPLTVKRGIGIEE----HDNEGRVLTLEYGNFYLVNVY 108
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K+ R W+ ++++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 109 TPNS--KQGLERLDYRMVWEDVFRKYLKELEKNKPVIICGDLNVAHKEIDLKNP------ 160
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKD-MDCGFSWSGNPI 218
N+++ GFT ER + +L+ G ID YR+ + +K+ M +S+ N
Sbjct: 161 ------TSNRKN---AGFTDEERSKISELLEAG-FIDTYRYFYPDKEGMYSWWSYRFNAR 210
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
G RIDYF+VSE LKD+ ++ I +E GSDHCPV L ++
Sbjct: 211 ANNAG--WRIDYFLVSESLKDK-----LEDAKIHME-VTGSDHCPVELTIN 253
>gi|302783529|ref|XP_002973537.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
gi|300158575|gb|EFJ25197.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
Length = 306
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 33/226 (14%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+W+ + SK Y+G AL+ + +P V++ L + +++ +GRV+ AEF+TF+L++ Y P
Sbjct: 104 FWTCSTSKLGYSGCALISR--IKPLSVTYGLGIS--QHDGEGRVVTAEFDTFFLVSVYVP 159
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N+G + E ++ R +WD ++L+ KP+I GDLN +HEEID+ P+
Sbjct: 160 NSGQRLERLTY-RTTEWDPAFSTYLLELEKRKPVIVTGDLNCAHEEIDIYDPD------- 211
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 220
NK GFT ER F + L+D +R K+ + GF+ WS +
Sbjct: 212 -----GNKR---SAGFTSEERTSFQTNFIDKGLVDTFR---KQHPLAVGFTYWSYRSNAR 260
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ K R+DYF+VS+ L C + + L GSDHCP+ L
Sbjct: 261 PQNKGWRLDYFLVSQGL-----VCSVADSYV-LPQLDGSDHCPIGL 300
>gi|198276716|ref|ZP_03209247.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
gi|198270241|gb|EDY94511.1| exodeoxyribonuclease III [Bacteroides plebeius DSM 17135]
Length = 252
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 120/232 (51%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y +W+ A+ K Y+GTA+ K QP +V++ L +++ +GRVI E E F+L+
Sbjct: 48 FEGYTSYWNYAEKKGYSGTAIFTKH--QPLQVTYGLGID--EHDHEGRVITLEMEKFFLV 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++ R WD + ++ + KP++ CGDLNV+H+EID+ +P+
Sbjct: 104 TVYTPNS--QDGLKRLDYRMTWDDDFRAYLQKLDQSKPVLVCGDLNVAHKEIDLKNPK-- 159
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
++N GFT ER++F +L G ID +R+ + E+ + WS
Sbjct: 160 -TNRMNA------------GFTDQEREKFQLLLDAG-FIDTFRYFYPEQTNIYSW-WSYR 204
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S L D++ ++ +GSDHCPV + +
Sbjct: 205 FKAREKNAGWRIDYFLASASLADKLKEAKIHTE------IFGSDHCPVEVTV 250
>gi|451821030|ref|YP_007457231.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787009|gb|AGF57977.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 252
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 33/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y+ +W+ A+ K Y+GTA+ K+ +P V + + +++ +GRVI AE++ FYL+
Sbjct: 48 LEGYKSYWNYAEKKGYSGTAVFTKE--EPISVKKGIGIS--EHDNEGRVITAEYDDFYLV 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K+ R W+ ++++ + KP+I CGDLNV+H+EID+ +P
Sbjct: 104 TVYTPNS--KQALERLDYRMVWEDVFRKYLKELEEKKPVIVCGDLNVAHKEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER + +L+ G ID YR H D++ +S WS
Sbjct: 159 ------------KANRRNAGFTDEERDKMSELLEAG-FIDTYR--HFYPDVEGVYSWWSY 203
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF+ SE LKD++ A ++ + GSDHCPV L ++
Sbjct: 204 RFNARANNAGWRIDYFLTSESLKDKLEAAKIHTEVM------GSDHCPVELVIN 251
>gi|403071080|ref|ZP_10912412.1| exodeoxyribonuclease [Oceanobacillus sp. Ndiop]
Length = 253
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 31/231 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V + L K + +GR+I EF F+L+N Y
Sbjct: 50 YHQYWNYAIRKGYSGTAVFTKK--KPLHVRYGLGKE--DNQEEGRIITLEFNEFFLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K + R +W+ + ++ + KP+I+CGDLNV+H+EID+ +
Sbjct: 106 TPNS--KRDLTRLDYRLEWEDELYSYLRELDEEKPVIYCGDLNVAHQEIDLKN------- 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+K + G GFT ER + +L G +D R H +K+ + WS
Sbjct: 157 --------HKTNHGNSGFTAQERGKMTRLLDSG-FVDTLRHFHPDKEGIYSW-WSYMKTI 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ R RIDYFIVS+ L + ++ H + + GSDHCPV+L++ +
Sbjct: 207 RERNIGWRIDYFIVSKRLVPYLKNSDV--HSLVM----GSDHCPVALDMDD 251
>gi|317056539|ref|YP_004105006.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
gi|315448808|gb|ADU22372.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
Length = 250
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 111/217 (51%), Gaps = 31/217 (14%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GTA+ KK +P +V F L T + +GRVI EFE +Y + Y PN + E
Sbjct: 62 YSGTAVYTKK--EPLEVKFGLNGT---HTDEGRVITCEFEDYYFVCCYVPNA--QNELKR 114
Query: 113 FQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R +++ ++ ++ Q KP+++CGDLNV+HEEID+ +P K +
Sbjct: 115 IDYRMEFEDDMRAYLSQLDKTKPVVYCGDLNVAHEEIDLKNP---------------KSN 159
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
G GF+ ER +F +L G D +R L+ +K + WS + RIDYF
Sbjct: 160 AGNAGFSDEERGKFTELLGAG-FADTFRRLYPDKAGAYSW-WSYRFNARKNNAGWRIDYF 217
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+VSE L D++ ++ L GSDHCPV L++
Sbjct: 218 VVSERLMDKVKDSKI------LSDITGSDHCPVELDI 248
>gi|291536334|emb|CBL09446.1| exodeoxyribonuclease III [Roseburia intestinalis M50/1]
Length = 246
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 31/233 (13%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P Y +W+ A K Y+GTA+ KK +P V++ + +++ +GRVI E+ FY+
Sbjct: 40 PLPGYFSYWNYAKKKGYSGTAIFTKK--EPLNVTYGI--GIEEHDKEGRVITLEYPDFYM 95
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN+ + E R +W+ + ++ + G KP+I CGDLNV+HEEID+ +P
Sbjct: 96 VTCYTPNS--QNELARLPYRMQWEDDFRAYLKRLDGSKPVILCGDLNVAHEEIDLKNP-- 151
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K + GF+ ER++ +L G D +R+ + + + + WS
Sbjct: 152 -------------KTNRKNAGFSDEEREKMTKLLDAG-FTDTFRYFYPDTEQIYSW-WSY 196
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYFI S+ + D++ ++ +GSDHCPV L++
Sbjct: 197 RFRAREKNAGWRIDYFITSKRMNDKLTGAKIH------TDVFGSDHCPVELDI 243
>gi|229366136|gb|ACQ58048.1| DNA-apurinic or apyrimidinic site lyase [Anoplopoma fimbria]
Length = 310
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 138/255 (54%), Gaps = 38/255 (14%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKT 76
+TK S EK + S P + + +W+ +D K Y+G A+L K +P KV++ + K
Sbjct: 89 ETKCS--EKALPAEITSMPEYPHK--YWAASDEKQGYSGVAMLCKT--EPLKVTYGIGKE 142
Query: 77 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPL 135
+++ +GRVI AEF FYL+ TY PN+ + R+ WD+ + ++ + KPL
Sbjct: 143 --EHDKEGRVITAEFPNFYLVTTYVPNS--SKGLVRLDYRKTWDEDFRAYLSELDMQKPL 198
Query: 136 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 195
+ CGDLNV+H+EID+ +P+ NK++ GFT+ ER+ FG +L G
Sbjct: 199 VLCGDLNVAHQEIDLKNPK------------GNKKN---AGFTVEEREGFGQLLGSG-FA 242
Query: 196 DAYRFLHKEKDMDCGF-SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 254
D++R L+ E+ F ++ N GK G R+DYF++S L + +++ +
Sbjct: 243 DSFRELYPEQANAYTFWTYMMNSRGKNVG--WRLDYFLLSSSLLPGLCDSKIRSKAL--- 297
Query: 255 GFYGSDHCPVSLELS 269
GSDHCP++L ++
Sbjct: 298 ---GSDHCPITLHIA 309
>gi|226228755|ref|YP_002762861.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
gi|226091946|dbj|BAH40391.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
Length = 265
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 130/269 (48%), Gaps = 58/269 (21%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEK-T 76
+TK+ RE+ I Y +W+ A +K Y+GTA+ + +P V+ K
Sbjct: 36 ETKSEREQVEI--------DLAGYHEYWNSATTKGYSGTAIFSRT--EPLSVTNGFAKAV 85
Query: 77 ALKY----------EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ-RRRKWDKRIQE 125
A KY E +GRVI AEFE F+++ Y PN K++ + R + WD
Sbjct: 86 AKKYTLVDDAGRDSETEGRVITAEFEKFFVVTVYTPNA--KDDLSRLPLRSQHWDA---A 140
Query: 126 FVLQCSG----KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAE 181
F+ C KP+++CGDLNV+H E+D+++P+ PN+ G+ GFT E
Sbjct: 141 FLAHCKALEMKKPVVFCGDLNVAHTELDLANPK------------PNR---GRKGFTDEE 185
Query: 182 RKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDR 240
R+ F + L G +D R H+ + +S WS + R RIDY +VS L+
Sbjct: 186 RQGFQSFLDAG-FVDTLRMFHQG---NGHYSWWSHFANSRARNVGWRIDYVLVSAALQKS 241
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ E+ + GSDHCPVS+ LS
Sbjct: 242 VATAEIHADVM------GSDHCPVSVTLS 264
>gi|257413807|ref|ZP_04744296.2| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|257202214|gb|EEV00499.1| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|291538795|emb|CBL11906.1| exodeoxyribonuclease III [Roseburia intestinalis XB6B4]
Length = 256
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 31/233 (13%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P Y +W+ A K Y+GTA+ KK +P V++ + +++ +GRVI E+ FY+
Sbjct: 50 PLPGYFSYWNYAKKKGYSGTAIFTKK--EPLNVTYGI--GIEEHDKEGRVITLEYPDFYM 105
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN+ + E R +W+ + ++ + G KP+I CGDLNV+HEEID+ +P
Sbjct: 106 VTCYTPNS--QNELARLPYRMQWEDDFRAYLKRLDGSKPVILCGDLNVAHEEIDLKNP-- 161
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K + GF+ ER++ +L G D +R+ + + + + WS
Sbjct: 162 -------------KTNRKNAGFSDEEREKMTKLLDAG-FTDTFRYFYPDTEQIYSW-WSY 206
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYFI S+ + D++ ++ +GSDHCPV L++
Sbjct: 207 RFRAREKNAGWRIDYFITSKRMNDKLTGAKIH------TDVFGSDHCPVELDI 253
>gi|354558981|ref|ZP_08978234.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
gi|353545305|gb|EHC14757.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
Length = 251
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 33/235 (14%)
Query: 38 PFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
PF+ Y +W+ A K Y+GTA+ KK +P + + + +++ +GRVI EFE F
Sbjct: 44 PFQLEGYYQYWNFAQKKGYSGTAIFSKK--EPLNIRYGI--GIEEHDQEGRVITLEFEKF 99
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHP 153
Y++ Y PN+ + E + R KW+ ++ KP+I+CGDLNV+H+EID+ +P
Sbjct: 100 YMVTVYTPNS--QRELARLEYRMKWEDDFLHYLRDLEQLKPVIFCGDLNVAHKEIDLKNP 157
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
K + GF+ ER + ++ +G D +R+ + E+ + W
Sbjct: 158 ---------------KANKNNAGFSAEERGKLTRVMDQG-FTDTFRYFYPEQ-TEAYTWW 200
Query: 214 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
S + RIDYF VS ELKD++ + GSDHCP+ LE+
Sbjct: 201 SYMFNARANNAGWRIDYFCVSAELKDQL------KDAVIYNDVLGSDHCPIGLEI 249
>gi|406882207|gb|EKD30059.1| hypothetical protein ACD_78C00169G0004 [uncultured bacterium (gcode
4)]
Length = 267
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y I+W+ A+ K Y+GTA+ K +P V + L +++ +GR+I EFE ++ + Y
Sbjct: 66 YHIYWNAAERKGYSGTAVFSK--VEPISVRYGLGMK--EHDQEGRIITLEFEKYFFVTVY 121
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K E + R+ WD +++ + KP+I CGDLNV+H+EID+++P+
Sbjct: 122 TPNA--KSELERLEYRQLWDSLFFDYLKRLEVEKPVIVCGDLNVAHQEIDLTNPK----- 174
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
PN+ W GFT ER FG L G ID +R + +K + + WS
Sbjct: 175 -------PNR--W-NAGFTDEERAGFGHYLANG-FIDTFRHFYPDKTGEYTW-WSNFFKS 222
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF++SE L + + ++ + GSDHCPV +++
Sbjct: 223 RDRNIGWRIDYFLISERLVTNLKSAFIR------QEIRGSDHCPVGIKI 265
>gi|225016166|ref|ZP_03705370.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
gi|224951039|gb|EEG32248.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
Length = 253
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 125/259 (48%), Gaps = 33/259 (12%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE D +E K+ + + + Y+ +W A+ K Y+GTA+ + P V++
Sbjct: 24 QEADADVFCVQETKM--QQGQAELALEGYEQFWCSAEKKGYSGTAVFTR--IPPVSVAYG 79
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 131
+ +++ +GRVI EFE F L+N Y PN + R +W+ + ++L+
Sbjct: 80 IGIP--EFDTEGRVITVEFEKFTLINVYTPNA--QRGLTRIDFRMQWEDAFRVYLLRLQE 135
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP++ CGDLNV+H EID+ + K + G GF+ ER + +L+
Sbjct: 136 SKPVVVCGDLNVAHNEIDLKN---------------YKTNRGNAGFSDEERGKMTELLQS 180
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 251
G L D++R+L+ EK C WS + RIDYF+ S+ LKD+I +
Sbjct: 181 G-LTDSFRYLYPEK-TGCYTWWSYMFNARANNAGWRIDYFLTSDVLKDQI------EDSV 232
Query: 252 ELEGFYGSDHCPVSLELSE 270
GSDHCP+ L L E
Sbjct: 233 IYSEVLGSDHCPIGLFLRE 251
>gi|224024813|ref|ZP_03643179.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
gi|224018043|gb|EEF76047.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
Length = 251
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 31/233 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F+ Y +W+ A+ K Y+GTA+ +P V++ L ++ +GRVI E + FYL+
Sbjct: 47 FEGYTSYWNYAEKKGYSGTAIFTH--LKPLNVTYGLGIDV--HDHEGRVITLEMDNFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ ++ R W+ + ++L+ K P++ CGDLNV+H+EID+ +P+
Sbjct: 103 TVYTPNS--QDGLKRLDYRMTWEDDFRNYLLELDKKKPVLVCGDLNVAHKEIDLKNPK-- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
++N GFT ER++F +L G ID +R+ + E+ + WS
Sbjct: 159 -TNRMNA------------GFTDQEREKFQILLDAG-FIDTFRYFYPEQTGIYSW-WSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYF+ S L D++ + ++ +GSDHCPV + L+
Sbjct: 204 FKAREKNAGWRIDYFLASRRLADKLESAKIHTE------IFGSDHCPVEVTLN 250
>gi|319935137|ref|ZP_08009577.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
gi|319809962|gb|EFW06345.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
Length = 252
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 128/257 (49%), Gaps = 34/257 (13%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
+++ D A +E KL R F+ Y +++ A K Y+G A+ KK +P V +
Sbjct: 24 KDVDADIFAIQETKL--QRNQIDLEFEGYTSYYNDAIKKGYSGVAIYTKK--EPMNVIYG 79
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 131
+ +++ +GR+I EFE FY + Y PN+ K E R+ W+ ++ V +
Sbjct: 80 M--GIEEHDQEGRLITLEFEKFYFVAVYTPNS--KRELERLDYRQVWEDAFRQHVQKLKE 135
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP++ CGDLNV+H EID+ + +K + GFT ER +F +L
Sbjct: 136 SKPVVLCGDLNVAHNEIDLKN---------------DKTNHKNAGFTDQERAKFSELLNS 180
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 251
G ID +R+ + E +M +S+ K G RIDYF+VSE+LK+ I + +
Sbjct: 181 G-FIDTFRYKYPETEMYSWWSYMFKAREKNAG--WRIDYFVVSEDLKENIKDAYIYTEIM 237
Query: 252 ELEGFYGSDHCPVSLEL 268
GSDHCPV +EL
Sbjct: 238 ------GSDHCPVGVEL 248
>gi|403385824|ref|ZP_10927881.1| exodeoxyribonuclease [Kurthia sp. JC30]
Length = 252
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 119/231 (51%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A K Y+GTA+ K P V + + E +GR+I E+E FY++ Y
Sbjct: 50 YEQYWNYALRKGYSGTAIFTKHT--PLSVKYGVGDRDT--EDEGRIITLEYERFYVVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K + R +W+ ++ ++++ KP+I+CGDLNV+HE ID+ + +
Sbjct: 106 TPNS--KRDLARLDERLEWEDNLRAYLIELDQQKPVIYCGDLNVAHEAIDLKNAK----- 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
PN G GFT ER + +L G D +R ++ ++D F+W + +
Sbjct: 159 -------PNV---GNSGFTNEERGKMTLLLNSG-FTDTFRAMYPQEDNR--FTW-WSYMN 204
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K R + + RIDYFIVS+ L + ++ + GSDHCPV LEL
Sbjct: 205 KVRERNIGWRIDYFIVSDRLNQHVTNADIHDQQL------GSDHCPVVLEL 249
>gi|366166303|ref|ZP_09466058.1| exodeoxyribonuclease III [Acetivibrio cellulolyticus CD2]
Length = 251
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 31/233 (13%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
PF+ Y +W+ A+ K Y+G A+ K +P VS+ + +++ +GRVI EF+ +Y+
Sbjct: 47 PFEGYYKYWNYAEKKGYSGVAVFTK--IKPITVSYGI--GIEEHDKEGRVITLEFDEYYV 102
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN+ + R KW+ ++ KP+I CGDLNV+H+EID+ +P+
Sbjct: 103 VTVYTPNS--QRGLTRLHYRMKWEDDFLSYLKSLERYKPVIVCGDLNVAHKEIDLKNPQ- 159
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER +F + + G ID +R+ + ++ + WS
Sbjct: 160 -----------SNKKN---AGFTEEERSKFDSYVNNG-FIDTFRYFYPDR-IGVYTWWSY 203
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFIVSE +KDR+ + GSDHCPV + L
Sbjct: 204 MFNSRQNNAGWRIDYFIVSERIKDRL------KDALVYSEITGSDHCPVGILL 250
>gi|347531556|ref|YP_004838319.1| exodeoxyribonuclease [Roseburia hominis A2-183]
gi|345501704|gb|AEN96387.1| exodeoxyribonuclease [Roseburia hominis A2-183]
Length = 255
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 33/232 (14%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
+ Y +W+ A K Y+GTA+ +K +P V + + +++ +GRVI EF FY++
Sbjct: 48 EGYYAYWNYAQKKGYSGTAIFTRK--EPLSVHYGIGIP--QHDTEGRVITLEFPDFYMVT 103
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN+ + E R +W+ ++ KPLI CGDLNV+HEEID+ +P
Sbjct: 104 CYTPNS--QNELARLSYRMEWEDAFLSYLKGLDRNKPLILCGDLNVAHEEIDLKNP---- 157
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGN 216
K + GFT ER + A+L G D +R H D + +S WS
Sbjct: 158 -----------KTNRKNAGFTDEERTKMTALLSAG-FTDTFR--HFYPDTEGIYSWWSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYFI S L DR++ GI L GSDHCPV+L +
Sbjct: 204 FHAREKNAGWRIDYFITSSALDDRLVDA-----GI-LTDVTGSDHCPVTLTV 249
>gi|392531481|ref|ZP_10278618.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum ATCC 35586]
Length = 251
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P +V + L K +++ +GRVI + +Y++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKH--EPDEVFYGLGKE--EHDQEGRVITLSYPDYYVVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W++ ++ Q KP+I CGDLNV+HE ID+ +
Sbjct: 106 TPNS--QNELKRLNYRMTWEEDFLAYLNQLDAEKPVIVCGDLNVAHENIDIKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F L+ G ID +R+ + E ++ +S WS
Sbjct: 158 ---------KTNRKNAGFTDEERGKFTEFLENG-YIDTFRYFYPE--LEGAYSWWSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYFIVSE L++++++ + L GSDHCPV L+++
Sbjct: 206 ARANNAGWRIDYFIVSERLQEKLVSAAI------LNEVVGSDHCPVELQIN 250
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G KK +P V++ + +++ +GRVI EFE+FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFTKK--EPLSVNYGINME--EHDKEGRVITCEFESFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ ++ + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F +L G ID +R+ + K+ + WS
Sbjct: 158 ------------KTNRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S LK + + + GSDHCPV LEL
Sbjct: 204 QQARDKNIGWRIDYFLCSNPLKTCL------KDALIYKDILGSDHCPVGLEL 249
>gi|330834656|ref|YP_004409384.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
gi|329566795|gb|AEB94900.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
Length = 256
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 115/218 (52%), Gaps = 31/218 (14%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GT L + +P V++ + K +++ +GRVI EF++ +++N Y PN G +
Sbjct: 70 YSGTLTLTR--IEPISVTYGIGKE--EFDVEGRVISTEFKSMFVINVYFPNAGEGLKRLD 125
Query: 113 FQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 172
F+ R +++ QE+V GKP + CGD NV+HEEID++ P K++
Sbjct: 126 FKLR--FNRAFQEYVASL-GKPSVICGDFNVAHEEIDIARP---------------KDNV 167
Query: 173 GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFI 232
GFT ERK F L G +D +R KE +S+ + K G RIDY +
Sbjct: 168 NHAGFTPEERKWFHEFLLSG-FVDTFRLFVKEPGHYSWWSYRFHAREKNIG--WRIDYCV 224
Query: 233 VSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
VS+EL+ ++ E+ LE GSDH PV++E+SE
Sbjct: 225 VSKELESKVKKAEI------LEKVMGSDHAPVTVEISE 256
>gi|311032922|ref|ZP_07711012.1| exodeoxyribonuclease III [Bacillus sp. m3-13]
Length = 254
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 116/239 (48%), Gaps = 31/239 (12%)
Query: 34 LSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL-EKTALKYEPDGRVILAEFE 92
L +P + YQ W Y+GTA+ K +P +V + L EK A + EP+GR++ E+E
Sbjct: 45 LDTPGY--YQYWNYAIKKGYSGTAVFTK--MKPLQVRYGLDEKKAEECEPEGRILTLEYE 100
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSHEEIDVS 151
F+L+N Y PN+ + + R W+ R ++ + K +I CGDLNV+H EID+
Sbjct: 101 DFFLVNVYTPNS--QRDLARLPFRLDWEDRFLAYIKMLDQQKSVIVCGDLNVAHAEIDLK 158
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GFT ER + +L EG D +R + E D
Sbjct: 159 NP---------------KSNRNNSGFTEEERGKMTRLLGEG-FSDTFRHFYPEL-TDKYT 201
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
WS + R RIDYFIVS+ LK + E+ GSDHCPV L L++
Sbjct: 202 WWSYMNKVRERNIGWRIDYFIVSDNLKGSLKDAEIHSD------IMGSDHCPVVLILNK 254
>gi|10640846|emb|CAC12624.1| probable apurinic/apyrimidinic endonuclease [Thermoplasma
acidophilum]
Length = 241
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 120/256 (46%), Gaps = 44/256 (17%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL 73
QE K D+ + EE L L + P K Y+GT LV++ +P VS+
Sbjct: 27 QETKADSTSVPEEMYHLGYYLYNNPAKK---------KGYSGTMSLVRE--KPIDVSYGF 75
Query: 74 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SG 132
E +GR++ EF+ FY +N Y PN + + +D++ E+ +
Sbjct: 76 EN------EEGRILNLEFDKFYFINVYFPNA--QHGLTRLDMKLDFDEKFLEYSNELRKK 127
Query: 133 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 192
KPLI CGD NV+HEEID++ P K++ GFT ER L G
Sbjct: 128 KPLIICGDFNVAHEEIDIARP---------------KDNENNAGFTKQERDWMTKFLDSG 172
Query: 193 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 252
+D YR KE +S+ N K G RIDYF+VS++++DR+ E+
Sbjct: 173 -YVDTYRIFMKEGGHYSWWSYRFNARAKNIG--WRIDYFVVSDDIRDRVKKAEI------ 223
Query: 253 LEGFYGSDHCPVSLEL 268
LE GSDH PV+LE+
Sbjct: 224 LETVTGSDHAPVTLEV 239
>gi|16082631|ref|NP_394956.1| exonuclease III [Thermoplasma acidophilum DSM 1728]
Length = 250
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 120/256 (46%), Gaps = 44/256 (17%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL 73
QE K D+ + EE L L + P K Y+GT LV++ +P VS+
Sbjct: 36 QETKADSTSVPEEMYHLGYYLYNNPAKK---------KGYSGTMSLVRE--KPIDVSYGF 84
Query: 74 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SG 132
E +GR++ EF+ FY +N Y PN + + +D++ E+ +
Sbjct: 85 EN------EEGRILNLEFDKFYFINVYFPNA--QHGLTRLDMKLDFDEKFLEYSNELRKK 136
Query: 133 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 192
KPLI CGD NV+HEEID++ P K++ GFT ER L G
Sbjct: 137 KPLIICGDFNVAHEEIDIARP---------------KDNENNAGFTKQERDWMTKFLDSG 181
Query: 193 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 252
+D YR KE +S+ N K G RIDYF+VS++++DR+ E+
Sbjct: 182 -YVDTYRIFMKEGGHYSWWSYRFNARAKNIG--WRIDYFVVSDDIRDRVKKAEI------ 232
Query: 253 LEGFYGSDHCPVSLEL 268
LE GSDH PV+LE+
Sbjct: 233 LETVTGSDHAPVTLEV 248
>gi|308233639|ref|ZP_07664376.1| exodeoxyribonuclease III Xth [Atopobium vaginae DSM 15829]
gi|328944401|ref|ZP_08241863.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
gi|327490985|gb|EGF22762.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
Length = 259
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y WS A+ K Y+GTA+ ++ +P ++ A E GRV EFE F+ ++ Y
Sbjct: 58 YTQTWSYAERKGYSGTAVFSRE--KPLSTIHTIGCKAADNE--GRVCALEFEKFWFVDVY 113
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K E R +WDK +EF++ KP+I CGD NV+H+EID+ +P
Sbjct: 114 TPNS--KNELARLDERMEWDKAYREFLVGLDAQKPVITCGDFNVAHQEIDLKNP------ 165
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
N E+ GF+ ER F ++L G D +R H ++ +S WS
Sbjct: 166 ------ASNHEN---AGFSDEERAGFSSLLGAG-FTDTFRSAHPT--LEGAYSWWSYRMR 213
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VS + + + + + YGSDHCPV LEL
Sbjct: 214 SRERNAGWRIDYFLVSNRIANTVTSSAIYNE------IYGSDHCPVGLEL 257
>gi|229816298|ref|ZP_04446607.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
gi|229808149|gb|EEP43942.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
Length = 280
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 117/248 (47%), Gaps = 50/248 (20%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFS----------------LEKTALKYEPDG 84
Y WS A+ K Y+GTA+ ++ +P V + LE A+ +G
Sbjct: 60 YHQVWSYAERKGYSGTAVFCRE--EPLSVRHADAVLAAGRAAGLSDDELELVAVA-ATEG 116
Query: 85 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDL 141
RV EFE F+ ++ Y PN + E R WD + F+ +GKP++ CGD
Sbjct: 117 RVCALEFERFWFVDVYTPNA--QGELARLSTRMAWDDAYRAFLRSLEDETGKPVVTCGDF 174
Query: 142 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 201
NV+H EID+ +P K + G GF+ ER +FG +L G D +R
Sbjct: 175 NVAHNEIDLKNP---------------KSNRGNAGFSDEERAKFGELLDAG-YTDTFR-- 216
Query: 202 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 260
+++ +S WS + RIDYF+VS+ + DR+ AC ++ +GSD
Sbjct: 217 AANPNLEGAYSWWSYRFNARKNNAGWRIDYFLVSDAIADRVRACGIRND------IFGSD 270
Query: 261 HCPVSLEL 268
HCPV+LE+
Sbjct: 271 HCPVTLEI 278
>gi|45358575|ref|NP_988132.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis S2]
gi|44921333|emb|CAF30568.1| exonuclease III [Methanococcus maripaludis S2]
Length = 249
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 32/227 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P V +E + ++ +GRVI EF+ +YL+N Y
Sbjct: 50 YFQYWNYAERKGYSGTAIFTK--IKPNNVILGMENS--EHNNEGRVITLEFDEYYLVNVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + + R+KWD+ ++ + KP+++CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QRGLTRLEYRQKWDEDFLSYIKTLETKKPVVFCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER F I+ G +D +R + E D +S+ N
Sbjct: 158 ---------KTNVKNAGFTPEERNGFDNIVNSG-FLDTFREFNNEPDNYSWWSYRFN--A 205
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ R RIDYF +S+ L++ + + + GSDHCPV +
Sbjct: 206 RARNIGWRIDYFCISKSLRNNLKDAYI------MPEVMGSDHCPVGI 246
>gi|218283512|ref|ZP_03489502.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
gi|218215780|gb|EEC89318.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
Length = 249
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 43/234 (18%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
YQ S Y+GT +L KK +P + + + +++ +GR+I E+ FYL+ Y
Sbjct: 52 YQYINSAKRKGYSGTMVLCKK--KPLSIKYGI--NVPEFDDEGRIITLEYPEFYLVTVYT 107
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
P +G + R +WD+ + L+ KP++ CGD NV++ EIDV +P+
Sbjct: 108 PTSG--DGLMRLDYRLEWDEAFGNY-LKSLDKPVMACGDFNVANNEIDVPYPDMIR---- 160
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 221
G GF+ ER F L L+D YR L+ E +SW Y
Sbjct: 161 -----------GTAGFSDEERDSFKENLL-SNLVDTYRVLNPET---IQYSW-----WSY 200
Query: 222 RGKR------MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
RG+ MR+DY++VS +LKD+I+ ++ L+ YGSDHCP+ L+++
Sbjct: 201 RGQARENNIGMRLDYWLVSNDLKDKIVDSKI------LDDIYGSDHCPIMLDIN 248
>gi|260589662|ref|ZP_05855575.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|331083093|ref|ZP_08332210.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
gi|260539902|gb|EEX20471.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|330405095|gb|EGG84632.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
Length = 251
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V + + +++ +GRVI E+E FY++ Y
Sbjct: 50 YFCYWNYAVKKGYSGTAIFAKK--EPLSVQYGI--GIEEHDQEGRVITLEYENFYMVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ + ++ Q KP+I CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QSELARLSYRMQWEDDFRAYLQQLDEKKPVIMCGDLNVAHQEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F L G D +R+ + +K + WS
Sbjct: 158 ---------KTNRHNAGFTDEEREKFTTFLDAG-FTDTFRYFYPDKTEIYSW-WSYRFKA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF S+ L +++++ + +GSDHCPV +++
Sbjct: 207 REKNAGWRIDYFCTSKRLDEKLLSASIHT------DIFGSDHCPVEVQI 249
>gi|402301696|ref|ZP_10820957.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
gi|401723230|gb|EJS96766.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
Length = 250
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 113/229 (49%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ A+ K Y+GTA+ K P V + + + + + +GRVI E+ FYL+ Y
Sbjct: 50 YEQYWNDAERKGYSGTAIFTKHT--PLSVQYGIGEDLI--DQEGRVIALEYSKFYLVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K + + R W++ ++ KP+I CGDLNV+H EID+ +
Sbjct: 106 TPNS--KRDLSRLPYRLSWEEHFLAYLKNLEEKKPVILCGDLNVAHTEIDLKNA------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G GFT ER + +L G D++R+L+ E D WS
Sbjct: 158 ---------KSNHGNSGFTQEERGKMTTLLSSG-FTDSFRYLYPET-TDKYSWWSYMNKV 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYFIVS EL + I E+ + GSDHCPV LEL
Sbjct: 207 RERNIGWRIDYFIVSNELTNSIKKAEIHNEIL------GSDHCPVFLEL 249
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 30/218 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y G AL K+ +P V + L + ++ +GR+I EF F+++N Y PN G K +
Sbjct: 167 YCGVALFSKE--KPISVKYGLNDST--FDTEGRIITVEFPEFFVINVYVPNAGQKLV--T 220
Query: 113 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+R +W+K ++ + + KP+I CGD+NV+H+EID+ +P K +
Sbjct: 221 LPKRLEWNKLFKKHIEELDQKKPVIICGDMNVAHQEIDLKNP---------------KTN 265
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
GFT ER L G ID +R L+ E + F WS + + R+DYF
Sbjct: 266 TKNAGFTKEERNDMTDFLAAG-FIDTFRSLYPEIEGAYTF-WSYFANARSKNIGWRLDYF 323
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
++SE +K+++ C+ I + YGSDHCPV L ++
Sbjct: 324 LISERIKNKV--CD----NIIRKDVYGSDHCPVILYIN 355
>gi|451343821|ref|ZP_21912887.1| exodeoxyribonuclease III (xth) [Eggerthia catenaformis OT 569 = DSM
20559]
gi|449337396|gb|EMD16558.1| exodeoxyribonuclease III (xth) [Eggerthia catenaformis OT 569 = DSM
20559]
Length = 251
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 117/233 (50%), Gaps = 31/233 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +++ A K Y+G A+L K +P V + ++ +++ +GRV+ EF+ FY +
Sbjct: 47 FPEYHAFYNSAVKKGYSGVAILTK--IKPNHVYYGIDIK--EHDQEGRVLTLEFDHFYFV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K E R KW+ ++ + + KP+I CGDLNV+H+EID+ +P
Sbjct: 103 GCYTPNS--KRELARLDYRMKWEDDFLAYLDKLNKTKPVILCGDLNVAHQEIDLKNPS-- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
+ GF+ ER++ +L G ID +R+ + ++ D WS
Sbjct: 159 -------------SNHKNAGFSDEEREKMTQLLSHG-YIDTFRYFYPDQ-TDAYSWWSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYFI SE LKD++ + + GSDHCPV LE+S
Sbjct: 204 FKARERNAGWRIDYFITSERLKDKLKDAYIYSDIL------GSDHCPVGLEIS 250
>gi|409386093|ref|ZP_11238562.1| Exodeoxyribonuclease III [Lactococcus raffinolactis 4877]
gi|399206574|emb|CCK19477.1| Exodeoxyribonuclease III [Lactococcus raffinolactis 4877]
Length = 277
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 42/241 (17%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTAL----KYEPDGRVILAE 90
F Y I W A YAGT L K+ ++S ++E + + +GR+I E
Sbjct: 66 FPGYAIAWRSSVEPARKGYAGTMFLYKQ-----ELSVTIETPEIGAPSTMDSEGRIITLE 120
Query: 91 FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEID 149
F+ FYL Y PN G + R+ WD++ ++++L+ KP+I GD NV+H EID
Sbjct: 121 FDNFYLTQVYTPNAG--DGLKRLAERQIWDEKYRDYLLELDAKKPVIATGDYNVAHFEID 178
Query: 150 VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 209
++HP + PGFT ER+ F +L G D +R +H + +
Sbjct: 179 LAHP---------------NNNRNSPGFTDEERQGFTNLLSAG-FTDTFRHVHGQ--VPN 220
Query: 210 GFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 267
+SW + K RIDYFI SE + D+I A EM G DH P+ LE
Sbjct: 221 VYSWWAQRSKTSKINNAGWRIDYFIASERIADKICASEMIDSGAR------QDHTPILLE 274
Query: 268 L 268
+
Sbjct: 275 I 275
>gi|430751698|ref|YP_007214606.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
gi|430735663|gb|AGA59608.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
Length = 258
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 32/239 (13%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
+ Y+ +W+ A+ K Y+GTA+ + F+P V L +P+GRV+ EF F+L+N
Sbjct: 49 EGYRQYWNCAEKKGYSGTAVFTR--FEPLSVRKGLSDGD---DPEGRVLTLEFPAFFLVN 103
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN + + + + R W++R + ++ + KP++ CGDLNV+H EID+ + +F
Sbjct: 104 VYTPNA--RRDLSRLEYRIAWEERFRAYLKELDARKPVVVCGDLNVAHREIDLKNAKF-- 159
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
+ G GFT ER+ +L+ G D +R + ++ D WS P
Sbjct: 160 -------------NRGNAGFTDEEREAMTRLLEAG-FTDTFRHFYPDR-TDAYTWWSFMP 204
Query: 218 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSE 276
+ R RIDYF+VS L A ++ I+ G GSDHCPV L + + E
Sbjct: 205 KVRERNIGWRIDYFLVSARL-----APYLEDALID-SGIMGSDHCPVGLLMRDPGEQPE 257
>gi|317497391|ref|ZP_07955713.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895311|gb|EFV17471.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 250
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GT + K+ +P V + L +++ +GRVI EF+ +Y + Y
Sbjct: 50 YHQYWNYAVKKGYSGTGIFTKE--EPISVFYGL--GIEEHDQEGRVITLEFKDYYFITVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R KW++ ++ + KP+I+CGDLNV+ EEID+ +P
Sbjct: 106 TPNS--QSELARLSYRMKWEEDFLAYLKKLEEKKPVIFCGDLNVAVEEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++ IL G ID +R+L+ ++ + WS
Sbjct: 158 ---------KTNRKNAGFTDEEREKMRTILNNG-FIDTFRYLYPDQTGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFIVSE LKDRI ++ L GSDHCP+ L+
Sbjct: 207 RKNNAGWRIDYFIVSECLKDRISDAKI------LTDVMGSDHCPIELDF 249
>gi|390345498|ref|XP_789515.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Strongylocentrotus purpuratus]
Length = 342
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 134/245 (54%), Gaps = 35/245 (14%)
Query: 31 MRALSSPP---FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRV 86
+ A PP +Y I ++ A+ K Y+G AL KK +P V+ + +++ +GR+
Sbjct: 126 IDATKPPPEADLDDYHITYNAAEKKGYSGVALFSKK--EPLSVTKGM--GIEEHDKEGRL 181
Query: 87 ILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSH 145
I AE+++FY + Y PN+ K + R++WDK ++ + K P+I CGD+NV+H
Sbjct: 182 ITAEYDSFYFVGVYVPNSSRKLVRLDY--RQEWDKDFHAYLKKLDAKKPVICCGDMNVAH 239
Query: 146 EEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KE 204
EEID+ +P+ N+ PGFT ER+ F ++L G +D++R L+ +E
Sbjct: 240 EEIDLKNPK------------SNRNK--TPGFTDQEREGFTSLLDMG-FVDSFRHLYPEE 284
Query: 205 KDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 264
D +++ GN K G R+DY ++S+ L ++ C+ Q + L+ F GSDHCP+
Sbjct: 285 ADAYSFWTYMGNCRAKNVG--WRLDYGVISKALVPKL--CDNQ---MRLQTF-GSDHCPM 336
Query: 265 SLELS 269
+ L+
Sbjct: 337 VVSLA 341
>gi|295107237|emb|CBL04780.1| exodeoxyribonuclease III [Gordonibacter pamelaeae 7-10-1-b]
Length = 285
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 131/294 (44%), Gaps = 75/294 (25%)
Query: 15 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 73
EL D A +E KL +A P Y+ +WS A+ K Y+GTA+ K+ QP +V L
Sbjct: 25 ELDADIVALQETKLQEGQATLDLP--QYREYWSYAEKKGYSGTAVFTKE--QPLQVLHGL 80
Query: 74 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG- 132
L E GR++ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 81 GSDYLDAE--GRIVALEFPQFWFVDVYTPNA--QNELARIAHRMEWDDAFRDF---CKGL 133
Query: 133 -------------------------------------KPLIWCGDLNVSHEEIDVSHPEF 155
KP++ CGD NV+H+EID+ +P
Sbjct: 134 EEGVLPADVPVQRPAPGEGHVCISELPLTQPGETAAPKPVVMCGDFNVAHQEIDLKNPG- 192
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 214
PN+ G+ GF+ ER +F +L+ G +D +R LH D+ +S WS
Sbjct: 193 -----------PNR---GKAGFSDEERGKFTDLLEAG-FVDTFRRLH--PDVTGAYSWWS 235
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L ++ + + + YGSDHCPV LEL
Sbjct: 236 YRFKARQNNAGWRIDYFLVSESLAPKVASACI------YDEVYGSDHCPVGLEL 283
>gi|242004144|ref|XP_002422991.1| Recombination repair protein, putative [Pediculus humanus corporis]
gi|212505907|gb|EEB10253.1| Recombination repair protein, putative [Pediculus humanus corporis]
Length = 332
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 109/217 (50%), Gaps = 34/217 (15%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAG AL K +P V + +++ +GRVI AE+E FYL+ Y PN G +
Sbjct: 141 YAGVALYSK--LKPLSVKIGIGHK--EHDTEGRVITAEYEDFYLVTAYVPNAG--RGLVT 194
Query: 113 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+R KWD + ++ + S KP+I CGDLNV+H EID+ +P +
Sbjct: 195 LPKRLKWDVAFKGYLKKLDSEKPVILCGDLNVAHNEIDLKNPS---------------TN 239
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RID 229
GFT ER F +L G ID +R L+ K+ + W N IG R + R+D
Sbjct: 240 TKTAGFTQEERDGFTKLLNAG-FIDTFRKLYPNKEGAYTY-W--NYIGNARSRNAGWRLD 295
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
YF+VSE + + C+ + + YGSDHCP++L
Sbjct: 296 YFVVSERIMSTV--CD----SVIRKEVYGSDHCPITL 326
>gi|414085431|ref|YP_006994142.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412999018|emb|CCO12827.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 251
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P V + L K +++ +GRVI + +Y++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKH--EPDDVFYGLGKE--EHDQEGRVITLSYPDYYVVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W++ ++ Q KP+I CGDLNV+HE ID+ +
Sbjct: 106 TPNS--QNELKRLDYRMTWEEDFLAYLNQLDAEKPVIVCGDLNVAHENIDIKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F L+ G ID +R+ + E ++ +S WS
Sbjct: 158 ---------KTNRKNAGFTDEERGKFTEFLENG-YIDTFRYFYPE--LEGAYSWWSYRFN 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYFIVSE L++++++ + L GSDHCPV L+++
Sbjct: 206 ARANNAGWRIDYFIVSERLQEKLVSAAI------LNEVVGSDHCPVELQIN 250
>gi|295397847|ref|ZP_06807910.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
gi|294973892|gb|EFG49656.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
Length = 275
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 119/261 (45%), Gaps = 36/261 (13%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVS 70
QE K K ++ L ++ A P +K +W S A YAGT L KK + P+ V+
Sbjct: 43 QETKLSAKGPTKKHLDIIEA-DVPDYK--VVWVSSVEPARKGYAGTMFLYKKDYTPE-VT 98
Query: 71 FSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 130
F + +GR+I EF FY+ N Y PN G + R+ WD + ++
Sbjct: 99 FPQIGAPTTMDYEGRMITLEFTDFYVTNVYTPNAG--SALARLEDRQVWDVQYANYLADL 156
Query: 131 SGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 189
K P+I CGD NV+H EID++HP K + GFT ER F +L
Sbjct: 157 DAKKPVIACGDFNVAHTEIDLAHP---------------KNNHFSAGFTDEERAGFTNLL 201
Query: 190 KEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQ 247
G D +R +H D++ ++W + K RIDY++VS+ + D++ EM
Sbjct: 202 NRG-FTDTFRHIH--GDVEGVYTWWAQRVKTSKINNSGWRIDYWLVSDRIADKVQKSEML 258
Query: 248 GHGIELEGFYGSDHCPVSLEL 268
G DH P+ LE+
Sbjct: 259 DSGTR------QDHTPILLEI 273
>gi|256545331|ref|ZP_05472695.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
gi|256399012|gb|EEU12625.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
Length = 275
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 104/223 (46%), Gaps = 30/223 (13%)
Query: 49 ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 108
A YAG L KK Q K ++F + + + R+I EFE FYL Y PN G
Sbjct: 78 ARKSYAGCLTLYKKNLQTK-ITFPVLDAPDTMDQEARIITLEFEKFYLTQVYTPNAG--N 134
Query: 109 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 167
N R+ WD++ ++ K +I CGD NV+H+EID+ HPE
Sbjct: 135 GLNRLGLRQIWDEKFANYLENLDKNKAVIACGDFNVAHKEIDLKHPE------------N 182
Query: 168 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKR 225
N E GFT ER F +L +G +D +R++H D++ ++W + K
Sbjct: 183 NHE---SAGFTDEERNGFTNLLNKG-FVDTFRYIH--GDVEGKYTWWAQRVKTSKINNSG 236
Query: 226 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RIDYFIVS+ +KD+I M G DH P+ L +
Sbjct: 237 WRIDYFIVSDRIKDKIKESNMIDSGDR------QDHTPIYLSI 273
>gi|323483337|ref|ZP_08088727.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323691163|ref|ZP_08105441.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|355627198|ref|ZP_09049134.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
gi|323403435|gb|EGA95743.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323504773|gb|EGB20557.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|354820443|gb|EHF04859.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
Length = 251
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 117/230 (50%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +WS A+ K Y+GTAL K+ +P V++ L A +E GRVI AEF +Y++ Y
Sbjct: 51 YYQYWSYAEKKGYSGTALFTKE--EPLSVTYGLGIEAHDHE--GRVITAEFPDYYVITCY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ ++ R +W+ ++ + KP+I+CGDLNV+H EID+ +P
Sbjct: 107 TPNS--QDGLARLPYRMQWEDDFLSYLKKLEEHKPVIFCGDLNVAHREIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER +F +L+ G ID YR H D + +S WS
Sbjct: 159 ---------KSNRKNAGFTDEERGKFTQLLESG-FIDTYR--HFYPDQEGIYSWWSYRFK 206
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VS+ L+DR+ + + GSDHCPV L +
Sbjct: 207 AREKNAGWRIDYFCVSKALEDRLESAMIHTE------IMGSDHCPVELVI 250
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 30/226 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
Y +W YAG A+ K P V + + +++ GR+I AE+E FYL+N Y
Sbjct: 506 YHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EFDDVGRMITAEYEKFYLINVYV 561
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+G K + + R +W+K Q +V + KP++ CGD+NVSH ID+ +P
Sbjct: 562 PNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENP------- 612
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GFT ER + +L G +D +R L+ ++ F W+ +
Sbjct: 613 --------KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLYPDRKGAYTF-WTYMANAR 662
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
R R+DY +VSE +++ E++ + GSDHCP+++
Sbjct: 663 ARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GSDHCPITI 702
>gi|167767320|ref|ZP_02439373.1| hypothetical protein CLOSS21_01839 [Clostridium sp. SS2/1]
gi|429761671|ref|ZP_19294088.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
gi|167711295|gb|EDS21874.1| exodeoxyribonuclease III [Clostridium sp. SS2/1]
gi|291559374|emb|CBL38174.1| exodeoxyribonuclease III [butyrate-producing bacterium SSC/2]
gi|429183247|gb|EKY24313.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
Length = 250
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GT + K+ +P V + L +++ +GRVI EF+ +Y + Y
Sbjct: 50 YHQYWNYAVKKGYSGTGIFTKE--EPISVFYGL--GIEEHDQEGRVITLEFKDYYFITVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R KW++ ++ + KP+I+CGDLNV+ EEID+ +P
Sbjct: 106 TPNS--QSELARLSYRMKWEEDFLAYLKKLEEKKPVIFCGDLNVAVEEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++ IL G ID +R+L+ ++ + WS
Sbjct: 158 ---------KTNRKNAGFTDEEREKMRTILSNG-FIDTFRYLYPDQTGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFIVSE LKDRI ++ L GSDHCP+ L+
Sbjct: 207 RKNNAGWRIDYFIVSECLKDRISDAKI------LTDVMGSDHCPIELDF 249
>gi|225376286|ref|ZP_03753507.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
gi|225211932|gb|EEG94286.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
Length = 255
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 31/227 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P VS+ + +++ +GRVI E++ FYL+ Y
Sbjct: 54 YHQFWNYAEKKGYSGTAIFTKH--EPLSVSYGI--GIPEHDHEGRVITLEYDAFYLVTCY 109
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W++ F+ + KP+I CGDLNV+HEEID+ +P
Sbjct: 110 TPNS--QNELARLPYRMQWEEDFLAFLKRLDEVKPVIVCGDLNVAHEEIDLKNP------ 161
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER + +L G D +R+ + +K+ + WS
Sbjct: 162 ---------KTNRKNAGFSDEERAKMTTLLNSG-FTDTFRYFYPDKEGIYSW-WSYRFKA 210
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ + RIDYFI S L ++ +Q GI E YGSDHCPV L
Sbjct: 211 REKNAGWRIDYFITSRCLDEK-----LQSAGIHTE-VYGSDHCPVEL 251
>gi|309775417|ref|ZP_07670420.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916806|gb|EFP62543.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 254
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 114/217 (52%), Gaps = 30/217 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GT + K+ +P VS+ L +++ +GRVI E+E FYL+ Y PN+ K+
Sbjct: 62 YSGTMVFSKQ--EPIHVSYGL--GIEEHDHEGRVITCEYEDFYLVCVYTPNS--KDGLLR 115
Query: 113 FQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R +W+ + ++ + + K ++ CGDLNV+H+EID+ +P K +
Sbjct: 116 LDYRMEWEDAFRTYLHKLNETKSVLVCGDLNVAHKEIDLKNP---------------KTN 160
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
GFT ER + +L G ID+YR+L+ E++ + WS + + RIDYF
Sbjct: 161 RRNAGFTDEERNKMSVLLDSG-FIDSYRYLYPEQEGVYSW-WSYRFKAREKNAGWRIDYF 218
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+VSE+ KD I ++ YGSDHCPVSLE
Sbjct: 219 LVSEDAKDGIREAKIH------TDIYGSDHCPVSLEF 249
>gi|269216697|ref|ZP_06160551.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
gi|269129931|gb|EEZ61014.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
Length = 264
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 46/240 (19%)
Query: 46 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 104
WS A+ K Y+GTA+ ++ +P +V + AL E GR+ EFE F+ ++ Y PN
Sbjct: 54 WSYAEKKGYSGTAVFSRE--EPLQVVHHVGTPALDTE--GRICACEFEKFWFVDVYTPNA 109
Query: 105 GWKEEENSFQRRRKWDKRIQEFVLQCSG--------------KPLIWCGDLNVSHEEIDV 150
+ E + R WD +EF KP+I CGD NV+H+EID+
Sbjct: 110 --QPELARLEHRMAWDAAFREFCKNLEAGVVPEGLGYASAEPKPVIMCGDFNVAHQEIDL 167
Query: 151 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 210
+P + + G PGF+ ER F ++L G D +R LH D++
Sbjct: 168 KNP---------------RSNRGNPGFSDEERSSFTSLLDAG-FADTFRMLH--PDLEGA 209
Query: 211 FS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+S WS + RIDYF+VS+ L+ I + + + GSDHCPV L+++
Sbjct: 210 YSWWSYRFNARKNNAGWRIDYFLVSDALRGAIESASI------YDEVMGSDHCPVGLDIA 263
>gi|221194898|ref|ZP_03567954.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
gi|221184801|gb|EEE17192.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
Length = 281
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 112/226 (49%), Gaps = 33/226 (14%)
Query: 46 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 104
W+ A+ K Y+GTA+ ++ +P +V + E GRV EF+ F+ ++ Y PN+
Sbjct: 84 WNYAERKGYSGTAVFSRE--EPLQVIRQIGSPVADNE--GRVCALEFDRFWFVDVYTPNS 139
Query: 105 GWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 163
KE+ R WD+R ++F+ + S KPLI CGD NV+H EID+ +P
Sbjct: 140 --KEQLARLDERLVWDERYRDFIAELSAQKPLITCGDFNVAHTEIDLKNP---------- 187
Query: 164 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYR 222
+ GF+ ER+ F +L G D +R+ H D+ +S WS +
Sbjct: 188 -----SSNHKNAGFSDEERESFTKLLDAG-FTDTFRYRH--PDVTGAYSWWSYRFNARKN 239
Query: 223 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RIDYF+VS IA ++ G I L YGSDHCPV L +
Sbjct: 240 NAGWRIDYFLVSNR-----IAQQITGAAI-LNEVYGSDHCPVELTI 279
>gi|153815015|ref|ZP_01967683.1| hypothetical protein RUMTOR_01232 [Ruminococcus torques ATCC 27756]
gi|145847583|gb|EDK24501.1| exodeoxyribonuclease III [Ruminococcus torques ATCC 27756]
Length = 252
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ + +++ +GRVI EFE FY + Y
Sbjct: 52 YHQYWNYAVKKGYSGTAVFTKK--EPLSVTYGI--GIEEHDQEGRVITCEFEDFYFVTVY 107
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ + ++ + KP+I GD+NV+H+EID+ +P
Sbjct: 108 TPNS--QNELARLDYRMRWEDDFRMYLKKLEEKKPVIVTGDMNVAHKEIDLKNP------ 159
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER +F +L G ID +R+ + +++ + WS
Sbjct: 160 ---------KTNRKNAGFTDEERGKFTELLDAG-FIDTFRYFYPDREGIYSW-WSYRFSA 208
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LK+R+ ++ L GSDHCP+ L++
Sbjct: 209 RAKNAGWRIDYFCVSESLKERLKDAKI------LTDVMGSDHCPIELDM 251
>gi|158321340|ref|YP_001513847.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
gi|158141539|gb|ABW19851.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
Length = 252
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 31/233 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y +W+ A+ K Y+GTA+ K+ +P V + + +++ +GRVI EF +Y++
Sbjct: 48 LEGYHQYWNYAEKKGYSGTAIFTKE--EPISVFYGI--GIEEHDKEGRVITLEFGDYYMV 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ +++ R W+ + ++ KP+I CGDLNV+H EID+ +P
Sbjct: 104 TVYTPNS--QQKLARLDYRMTWEDCFRSYLNNLDKQKPIIVCGDLNVAHNEIDLKNP--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F L G ID YR+ + +++ + WS
Sbjct: 159 ------------KSNRKNAGFSDEERAKFTEFLGNG-YIDTYRYFYPDREGAYTW-WSYM 204
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF VSE L+D++++ ++ H + GSDHCPV L ++
Sbjct: 205 FNARANNAGWRIDYFCVSERLQDKLVSADIHDHIL------GSDHCPVELVIN 251
>gi|402828442|ref|ZP_10877330.1| exodeoxyribonuclease III [Slackia sp. CM382]
gi|402286525|gb|EJU34996.1| exodeoxyribonuclease III [Slackia sp. CM382]
Length = 264
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 46/240 (19%)
Query: 46 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNN 104
WS A+ K Y+GTA+ ++ +P +V + AL E GR+ EFE F+ ++ Y PN
Sbjct: 54 WSYAEKKGYSGTAVFSRE--EPLQVVHHVGTPALDTE--GRICACEFEKFWFVDVYTPNA 109
Query: 105 GWKEEENSFQRRRKWDKRIQEFVLQCSG--------------KPLIWCGDLNVSHEEIDV 150
+ E + R WD +EF KP+I CGD NV+H+EID+
Sbjct: 110 --QPELARLEHRMAWDAAFREFCKNLEAGVVPEGLGYASAEPKPVIMCGDFNVAHQEIDL 167
Query: 151 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 210
+P + + G PGF+ ER F ++L G D +R LH D++
Sbjct: 168 KNP---------------RSNRGSPGFSDEERSSFTSLLDAG-FADTFRMLH--PDLEGA 209
Query: 211 FS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+S WS + RIDYF+VS+ L+ I + + + GSDHCPV L+++
Sbjct: 210 YSWWSYRFNARKNNAGWRIDYFLVSDALRGAIESASI------YDEVMGSDHCPVGLDIA 263
>gi|317501545|ref|ZP_07959741.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088593|ref|ZP_08337504.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440482|ref|ZP_08620069.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
gi|316897056|gb|EFV19131.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407550|gb|EGG87050.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012927|gb|EGN42818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
Length = 250
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ KK +P V++ + +++ +GRVI EFE FY + Y
Sbjct: 50 YHQYWNYAVKKGYSGTAVFTKK--EPLSVTYGI--GIEEHDQEGRVITCEFEDFYFVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ + ++ + KP+I GD+NV+H+EID+ +P
Sbjct: 106 TPNS--QNELARLDYRMRWEDDFRMYLKKLEEKKPVIVTGDMNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER +F +L G ID +R+ + +++ + WS
Sbjct: 158 ---------KTNRKNAGFTDEERGKFTELLDAG-FIDTFRYFYPDREGIYSW-WSYRFSA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF VSE LK+R+ ++ L GSDHCP+ L++
Sbjct: 207 RAKNAGWRIDYFCVSESLKERLKDAKI------LTDVMGSDHCPIELDM 249
>gi|290986733|ref|XP_002676078.1| predicted protein [Naegleria gruberi]
gi|284089678|gb|EFC43334.1| predicted protein [Naegleria gruberi]
Length = 340
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 128/256 (50%), Gaps = 32/256 (12%)
Query: 19 DTKASREEKLILMRALSSPPFKNY--QIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT 76
+TK S + KL ++ FKNY S A Y+GTA V K PK ++
Sbjct: 112 ETKLSEDVKL---SEMAQYKFKNYIGHFNTSRARKGYSGTACFVLK-HGPKVLNVKFGIG 167
Query: 77 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPL 135
K++ +GR I E+E FYL+NTY PN+G + + R ++WD + ++ + KP+
Sbjct: 168 KDKHDLEGRTITVEYEDFYLVNTYCPNSGQNLDRLEY-RTKEWDVDLLKYFEKLEKKKPI 226
Query: 136 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG-RL 194
IW GDLNV+ E+D+ P + + PGFT+ ER+ + K
Sbjct: 227 IWGGDLNVAISEMDIHDPLTLSKS---------------PGFTLEERQSSPLVTKASPPF 271
Query: 195 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 254
ID++R+ + K + + + + + K RIDYF+ S LKD+I+ + LE
Sbjct: 272 IDSFRYKNPYKKQYTYYGYIND--MRLQKKGWRIDYFVCSNSLKDKIVNSYI------LE 323
Query: 255 GFYGSDHCPVSLELSE 270
++GSDH P+ L +++
Sbjct: 324 EYFGSDHLPIGLIINK 339
>gi|148544535|ref|YP_001271905.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|184153898|ref|YP_001842239.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227363037|ref|ZP_03847174.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|325682856|ref|ZP_08162372.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
gi|148531569|gb|ABQ83568.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|183225242|dbj|BAG25759.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227071921|gb|EEI10207.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|324977206|gb|EGC14157.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
Length = 253
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 33/229 (14%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
NY +W+ A+ K Y+GTA+ K ++P+ V + + + ++ +GR+I E+ FYL++
Sbjct: 49 NYYQYWNYAEKKGYSGTAIFTK--YKPENVIYGMNNSI--FDKEGRLITLEYPNFYLIDV 104
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y P +G E+ R WD+ ++V+ S KP+I GD++++++ ID++ P
Sbjct: 105 YVPVSG--EKLQHLDYRLDWDRAFLDYVINLQSSKPVIIGGDMSIAYQPIDLAEP----- 157
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNP 217
E+ + GFT ER FG +L G L D +R+LH ++ ++ WS
Sbjct: 158 ----------TENHHKAGFTKQERADFGKLLNAG-LTDTFRYLH--PNLHGAYTWWSYRY 204
Query: 218 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ R R+DYF+VS+ K+RI ++ L GS HCP+ L
Sbjct: 205 DARERNVGWRLDYFLVSDVWKERIEEAKI------LSDVKGSSHCPIEL 247
>gi|256847688|ref|ZP_05553133.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
gi|256715377|gb|EEU30353.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
Length = 275
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 110/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +YQ+ W A YAGT L + PK +S+ + +GR+I EF F
Sbjct: 64 FPDYQVAWRSSVEPARKGYAGTMYLYRTGLTPK-ISYPQIGAPEPMDNEGRMITLEFPYF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN+G R+ WD R +E++ Q KP+I GD NV+HE ID++HP
Sbjct: 123 FVTEVYTPNSG--TGLRRLAERQIWDDRYREYLQQLDQQKPVIASGDFNVAHEPIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
E + GFT ER+ F +LK G D++R LH E+ +SW
Sbjct: 181 E---------------NNHHSAGFTDEEREHFTKLLKAG-FTDSFRHLHPEE--KGAYSW 222
Query: 214 SGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++VS+ + D+++ M G DH P+ L++
Sbjct: 223 WAQRVITSKQNNSGWRIDYWLVSDRIADKVVKSSMIDTGAR------RDHTPIELDI 273
>gi|213512198|ref|NP_001135227.1| DNA-(apurinic or apyrimidinic site) lyase [Salmo salar]
gi|197631957|gb|ACH70702.1| APEX nuclease 1 [Salmo salar]
gi|209154634|gb|ACI33549.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
gi|209154684|gb|ACI33574.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
Length = 312
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 32/227 (14%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+W+ +D K Y+G A+L K +P KV++ + K +++ +GRVI AEF TF+L+ Y P
Sbjct: 113 YWAGSDEKEGYSGVAMLCKT--EPLKVTYGIGKE--EHDKEGRVITAEFPTFFLVTAYVP 168
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N+G R+ WD + ++ KPL+ CGDLNV+HEEID+ +
Sbjct: 169 NSG--RGLVRLDYRKTWDVEFKAYLSDLDKRKPLVLCGDLNVAHEEIDLKN--------- 217
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 221
+K + GFT ER+ F +L G D++R L+ E+ F W+ +
Sbjct: 218 ------SKGNKKNAGFTAEEREGFNQLLAAG-FTDSFRELYPEQANAYTF-WTYMMNSRS 269
Query: 222 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R+DYF++S L + +++ + GSDHCP++L +
Sbjct: 270 KNVGWRLDYFVLSSALLPGLCDSKIRNQAM------GSDHCPITLHM 310
>gi|403366756|gb|EJY83183.1| Exodeoxyribonuclease III family protein [Oxytricha trifallax]
Length = 620
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 109/218 (50%), Gaps = 31/218 (14%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT + K K +S S + K++ +GR I EFE F+L+ Y PN+G + +
Sbjct: 305 YAGTIIFSK----IKPISVSYDIGVHKHDKEGRTITLEFEKFFLVGVYVPNSGATLKWHD 360
Query: 113 FQRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 170
+ R +WD + ++ L+ GKP+I CGD+NV+H+EID+ P K
Sbjct: 361 Y-RCSEWDLDFRAYLKGLERRGKPVILCGDMNVAHQEIDIFDP---------------KR 404
Query: 171 DWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDY 230
+ FT ER+ F K G +D +R L+ K + F W + K R+DY
Sbjct: 405 NERMACFTNEERQSFSNFTKMG-FVDTFRELYPGK-IKYSF-WDIRDKSRKENKGWRLDY 461
Query: 231 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
F+VS ++K + E+ F+GSDHCPVSL L
Sbjct: 462 FMVSRQIKHALTDAEIHNE------FWGSDHCPVSLTL 493
>gi|384108936|ref|ZP_10009823.1| exodeoxyribonuclease III [Treponema sp. JC4]
gi|383869507|gb|EID85119.1| exodeoxyribonuclease III [Treponema sp. JC4]
Length = 276
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 117/240 (48%), Gaps = 40/240 (16%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F Y W A YAGT +L K+ + +K+ L + +GR+I EF+ F
Sbjct: 65 FTGYHFEWVSSVPPAKKGYAGTMILYKEGLKAEKIVPKLGAPD-TMDDEGRLIALEFDNF 123
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
Y +N Y PN+G + + R+ WD +++ K +I CGD NV+H+EID+++P
Sbjct: 124 YFVNVYTPNSG--DGLKRLKERQLWDSLYADYLSSLDQKKAVIACGDFNVAHKEIDLANP 181
Query: 154 --EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKE-KDMDCG 210
F+A GFT ER+ F +L +G D++RF+H + KD+
Sbjct: 182 ASNHFSA-----------------GFTDEEREGFTNLLAKG-FTDSFRFIHGDVKDI--- 220
Query: 211 FSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+SW G I K RIDYFIVS+ +KD+I EM G DH P+ LE+
Sbjct: 221 YSWWGQRIKTSKINNSGWRIDYFIVSDRIKDKIQKSEMIDSGPR------QDHTPILLEI 274
>gi|339448653|ref|ZP_08652209.1| exodeoxyribonuclease III Xth [Lactobacillus fructivorans KCTC 3543]
Length = 256
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 30/230 (13%)
Query: 38 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
P YQ W S YAG K + + V + ++ T E GR + E+ FYL+
Sbjct: 48 PGNYYQYWDSAERPGYAGVTTFTKH--KAQNVIYGVDGTDTDVE--GRCLTLEYPDFYLI 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
NTY PN+G EE R WD++ FV + +G KP+I GD++V+++ ID+ PE
Sbjct: 104 NTYVPNSG--EELQRLDYRLDWDQKFITFVNKLTGTKPVIIGGDMSVAYQPIDIDDPE-- 159
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
ED + G+T ER FG +L G +D +R LH + + WS
Sbjct: 160 -------------EDHHKAGYTQQERDDFGRLLASG-FVDTFRALHPHQSGAYTW-WSYR 204
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ R + R+DYF+VS+ +++ + + G+ + GSDH P+ L
Sbjct: 205 YDERARDRGWRMDYFLVSDSIQNDVAESNILGNVM------GSDHAPIQL 248
>gi|312381587|gb|EFR27301.1| hypothetical protein AND_06082 [Anopheles darlingi]
Length = 517
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 127/254 (50%), Gaps = 32/254 (12%)
Query: 39 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
K Y +W YAG A+ +K P VS+ L + + DGR++ AE+E FYL+
Sbjct: 73 IKGYHPYWLCKPGGYAGVAIYSRK--MPIHVSYGLGDE--EQDQDGRLLTAEYEKFYLVC 128
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN G K + +R +WD++ +++ + S KP+I CGD+NV+HEEID+++P+
Sbjct: 129 VYVPNAGNKLV--TLPKRMRWDEKFHQYLRELDSKKPVILCGDMNVAHEEIDLANPK--- 183
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
NK++ GFT ER +L G +D +R L+ ++ F W+
Sbjct: 184 ---------TNKKN---AGFTQEERDGLSKLLSFG-FVDTFRQLYPDRKAAYSF-WTY-- 227
Query: 218 IGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELE----GFYGSDHCPVSLELSEA 271
+G R K + R+DYFIVS+ D++ M H G G ++ V ++L
Sbjct: 228 MGGARAKNVGWRLDYFIVSQRFTDKVTDNVMAEHSASPTAPHGGAPGEEYGGVFIDLHFL 287
Query: 272 SSDSEKREKKNLDE 285
S + E + LDE
Sbjct: 288 SEEEETDLIRTLDE 301
>gi|336399679|ref|ZP_08580479.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
gi|336069415|gb|EGN58049.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
Length = 267
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 114/237 (48%), Gaps = 36/237 (15%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F YQ +W+ A+ K Y+GTA+ + P V + + +E GRVI E FYL+
Sbjct: 58 FDGYQSYWNYAERKGYSGTAIYTRHT--PLSVVYGMGIEEHGHE--GRVITMEMPEFYLV 113
Query: 98 NTYAPNNGWKEEENSFQRR----RKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSH 152
Y PN+ E RR +W+ + ++ K P+I CGD+NV+HEEID+ +
Sbjct: 114 CVYTPNSQEAETTGGKPRRLPYRMQWEDDFRAYLQALDQKKPVIVCGDMNVAHEEIDIKN 173
Query: 153 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 212
P+ LN GFT ER + +L G D++R LH + + +S
Sbjct: 174 PK---TNHLNA------------GFTDEERDKMTTLLDSG-FTDSFRALHPD---EVTYS 214
Query: 213 -WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
WS + RIDYF+ S+ L+D I G I E YGSDHCP+ L+L
Sbjct: 215 WWSYRFRSREHNTGWRIDYFLTSDRLRDHIT-----GASIHTE-IYGSDHCPIELDL 265
>gi|158340|gb|AAA62769.1| recombination repair protein [Drosophila melanogaster]
gi|3342457|gb|AAC27621.1| recombination repair protein 1 [Drosophila melanogaster]
Length = 679
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 30/226 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
Y +W YAG A+ K P V + + +++ GR+I AE+E FYL+N Y
Sbjct: 479 YHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EFDDVGRMITAEYEKFYLINVYV 534
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+G K + + R +W+K Q +V + KP++ CGD+NVSH ID+ +P
Sbjct: 535 PNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENP------- 585
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GFT ER + +L G +D +R L+ ++ F W+ +
Sbjct: 586 --------KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLYPDRKGAYTF-WTYMANAR 635
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
R R+DY +VSE +++ E++ + GSDHCP+++
Sbjct: 636 ARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GSDHCPITI 675
>gi|345861274|ref|ZP_08813541.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
gi|344325629|gb|EGW37140.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
Length = 250
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 33/235 (14%)
Query: 38 PFK--NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
PF+ Y +W+ A K Y+GTA+ K +P K+ + + K +++ +GRVI EF +
Sbjct: 44 PFRVEGYYQYWNFAQKKGYSGTAIFSK--MEPNKIVYGMGKE--EHDQEGRVITLEFGEY 99
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
Y++ Y PN+ + + R KW++ ++ + KP+I CGDLNV+H EID+ +P
Sbjct: 100 YVVTVYTPNS--QRGLARLEYRMKWEEDFLNYLKDLENSKPVIVCGDLNVAHTEIDLKNP 157
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+++ GF+ ER +F ++ G +D +RF + K + W
Sbjct: 158 ------------STNRKN---AGFSAEERNKFDELMNNG-FVDTFRFFYPNK-TEAYTWW 200
Query: 214 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
S + RIDYF VS LKD++ I + GSDHCPV LE+
Sbjct: 201 SYMFNARANNAGWRIDYFCVSAGLKDQL------KEAIIYKNVLGSDHCPVGLEI 249
>gi|377809183|ref|YP_005004404.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
gi|361055924|gb|AEV94728.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
Length = 251
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 35/271 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ AA + ++L D +E KL + F Y +W+ A+ K Y+GTA+
Sbjct: 11 LRAAVTHGFEDTFKDLDADFFCVQETKL--QKGQIEIDFPGYYQYWNYAERKGYSGTAIF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
K +P V++ + +Y+ +GR+I E+ +Y++ Y PN+ + + + R W
Sbjct: 69 TKH--KPLNVTYGI--GIEEYDTEGRIITLEYANYYVITCYTPNS--QPKLKRLEYRMSW 122
Query: 120 DKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + +V Q KP+I+CGDLNV+H EID+ +P K + GF+
Sbjct: 123 EDAFKNYVDQLKKDKPVIFCGDLNVAHNEIDLKNP---------------KTNHKNAGFS 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER +F +L+ G D +R H D+ +S WS + RIDYF+ S +L
Sbjct: 168 DQERAKFTELLQSG-FTDTFR--HFYPDLTGIYSWWSYRFNARKNNAGWRIDYFVTSNDL 224
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
D++ ++ +GSDHCPV L++
Sbjct: 225 DDKLKDAKIHTE------IFGSDHCPVELDI 249
>gi|17136678|ref|NP_476841.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|150421656|sp|P27864.2|RRP1_DROME RecName: Full=Recombination repair protein 1; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|7295875|gb|AAF51175.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|21428628|gb|AAM49974.1| LP05366p [Drosophila melanogaster]
Length = 679
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 30/226 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
Y +W YAG A+ K P V + + +++ GR+I AE+E FYL+N Y
Sbjct: 479 YHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EFDDVGRMITAEYEKFYLINVYV 534
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+G K + + R +W+K Q +V + KP++ CGD+NVSH ID+ +P
Sbjct: 535 PNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENP------- 585
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GFT ER + +L G +D +R L+ ++ F W+ +
Sbjct: 586 --------KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLYPDRKGAYTF-WTYMANAR 635
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
R R+DY +VSE +++ E++ + GSDHCP+++
Sbjct: 636 ARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GSDHCPITI 675
>gi|332797757|ref|YP_004459257.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
gi|332695492|gb|AEE94959.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
Length = 247
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 116/228 (50%), Gaps = 32/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+I+ A K Y+GT + + P VS+ L K +Y+ +GRVI+ E+ +Y++NTY
Sbjct: 50 YEIYVFPAKRKGYSGTMTMTR--IHPISVSYGLGKE--EYDSEGRVIILEYPEYYVINTY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN G E + +++ ++FV+ KP I CGD NV+H+EID++ P
Sbjct: 106 FPNAG--EGLKRLDFKLSFNRDFEKFVISLK-KPCIICGDFNVAHQEIDIARP------- 155
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K++ GFT ER+ F L G +D YR KE +S+ + K
Sbjct: 156 --------KDNVNHAGFTPQEREWFSHFLSLG-YVDTYRMFVKEGGHYSWWSYRFHAREK 206
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
G RIDY +VSE LK R+I ++ LE GSDH P+ LE+
Sbjct: 207 NIG--WRIDYCVVSESLKGRVIKADI------LEKVMGSDHAPILLEI 246
>gi|300767631|ref|ZP_07077541.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300494616|gb|EFK29774.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 265
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 33/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ A+ K Y+GTA+ K +P V++ + +++ +GRVI E+ +Y+L
Sbjct: 58 FPGYYQYWNYAERKGYSGTAIFTKH--EPLNVTYGI--GVPEFDDEGRVITLEYADYYVL 113
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+G E R++W+ ++ S KPLI+CGDLNV+HE ID+ +
Sbjct: 114 TCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPLIFCGDLNVAHENIDLKNW--- 168
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR-FLHKEKDMDCGFSWSG 215
+ + GFT ER +F +L G D +R F + D+ +S+ G
Sbjct: 169 ------------RSNHHSAGFTDEERTKFDRLLAAG-YTDTFRHFYPDQTDIYSWWSYRG 215
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ G RIDYFI S++L +++ + +GSDHCPV L++
Sbjct: 216 HARDNNSG--WRIDYFITSQQLDSQLLNARIHNE------IFGSDHCPVELDI 260
>gi|333984917|ref|YP_004514127.1| exodeoxyribonuclease III [Methylomonas methanica MC09]
gi|333808958|gb|AEG01628.1| exodeoxyribonuclease III Xth [Methylomonas methanica MC09]
Length = 254
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 127/259 (49%), Gaps = 40/259 (15%)
Query: 16 LKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLE 74
L +TKA ++ + +AL +Y ++ + A+ K Y+G ALL + P +V +
Sbjct: 32 LLQETKAQDDQ---VHKALEG--IDHYHVYCNSAERKGYSGVALLTRN--PPLRVVHDMG 84
Query: 75 KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 133
+++ +GRV++AEFE+FYLLN Y PN+G + R+ WD + ++ Q K
Sbjct: 85 IA--EHDQEGRVLVAEFESFYLLNVYVPNSG--DGLARLDYRQTWDAALLAYLQQLQNQK 140
Query: 134 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 193
P+I CGD NV+H+ ID++ P+ A N G+T E F + G
Sbjct: 141 PVIACGDFNVAHQAIDIARPK----ANYN----------KSAGYTQTEIDGFSRFTEAG- 185
Query: 194 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 251
ID++R H E +SW G R K + RIDY + S+ L RI
Sbjct: 186 FIDSFRHFHPET---VAYSWWSYRAGA-RAKNIGWRIDYVLTSQALLPRI------QDSF 235
Query: 252 ELEGFYGSDHCPVSLELSE 270
L GSDHCPV +++SE
Sbjct: 236 ILPEIMGSDHCPVGIQISE 254
>gi|328947089|ref|YP_004364426.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
gi|328447413|gb|AEB13129.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
Length = 251
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 33/231 (14%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
+Y +W+ A+ K Y+GTA+ K +P S+ + +++ +GRVI E+E F+L+
Sbjct: 49 DYHQFWNYAEKKGYSGTAVFTKH--EPISASYGI--GIAEHDTEGRVITLEYEKFFLVTV 104
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN+ ++E + R KW+ + ++ + K +I CGD+NV+HEEID+ +P
Sbjct: 105 YTPNS--QDELRRLEYRMKWEDDFRAYLKTLALKKGVIVCGDMNVAHEEIDIKNP----- 157
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNP 217
K + GFT ER + +L G D++R H D +S WS
Sbjct: 158 ----------KTNRRNAGFTDEERGKMTELLSSG-FTDSFR--HFYPDTAGVYSWWSYRF 204
Query: 218 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+VS+ +KD+ M G I E GSDHCPV L++
Sbjct: 205 HAREKNTGWRIDYFLVSDSIKDK-----MTGAKIHTE-ILGSDHCPVELDM 249
>gi|268318601|ref|YP_003292257.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
gi|262396976|emb|CAX65990.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
Length = 275
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 36/239 (15%)
Query: 39 FKNYQIWWSLADSK----YAGTALLVKKCFQPKKVSFSL-EKTALKYEPDGRVILAEFET 93
F NY W ++ YAGT L K P+ ++ + YE GR++ EF+
Sbjct: 64 FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTKPAIGAPDTMDYE--GRILTLEFDN 121
Query: 94 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSH 152
+Y+ Y PN+G E + R+ WD++ E++ + KP+I GD NV+H ID+ H
Sbjct: 122 YYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQKLDKSKPVIASGDYNVAHTPIDLKH 179
Query: 153 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 212
PE + GFT ER+ F +LK G D +R +H +++ +S
Sbjct: 180 PE---------------NNHHNAGFTDEERQDFDKLLKLG-FTDTFRKVH--GNIEGVYS 221
Query: 213 WSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W + K RIDY+IVS+ + D++ EM G DHCP+ LE++
Sbjct: 222 WWAQRVRTSKANNSGWRIDYYIVSDRIADQVTKSEMIDTGDR------KDHCPIMLEIN 274
>gi|308179822|ref|YP_003923950.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308045313|gb|ADN97856.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 254
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 114/234 (48%), Gaps = 35/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ A+ K Y+GTA+ K +P V++ + +++ +GRVI E+ +Y+L
Sbjct: 47 FPGYYQYWNYAERKGYSGTAIFTKH--EPLNVTYGI--GVPEFDDEGRVITLEYADYYVL 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVS--HPE 154
Y PN+G E R++W+ ++ S KPLI+CGDLNV+HE ID+ H
Sbjct: 103 TCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPLIFCGDLNVAHENIDLKNWHSN 160
Query: 155 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWS 214
+A GFT ER +F +L G D +R + ++ D WS
Sbjct: 161 HHSA-----------------GFTDEERTKFDRLLAAG-YTDTFRHFYPDQ-TDIYSWWS 201
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFI S++L +++ + +GSDHCPV L++
Sbjct: 202 YRGHARDNNSGWRIDYFITSQQLDSQLLNARIHNE------IFGSDHCPVELDI 249
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 33/236 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ A+ K Y+GTA+ K +P VS+ + K +++ +GRVI + +Y++
Sbjct: 47 FPGYYDYWNYAEKKGYSGTAIFTKH--KPLDVSYGIGKP--EHDQEGRVITLSYPNYYVV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ K E R +W+ Q ++ + S KP+I CGDLNV+HE ID+ +
Sbjct: 103 TCYTPNS--KSELKRLDYRMQWEDDFQLYLKKLDSEKPVILCGDLNVAHENIDLKNW--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER +F A+L G ID +R+ + D++ ++W
Sbjct: 158 ------------KTNQLSAGFSKEERMKFSALLDAG-FIDTFRYFY--PDLEGAYTWWNY 202
Query: 217 PIGKYRGKR-MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
+ RIDYF VS L+D + + L+ GSDHCPV L L E
Sbjct: 203 RFNARKTNAGWRIDYFCVSTRLQDHLQEARI------LDDIVGSDHCPVELILKET 252
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 33/228 (14%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+W+ + SK Y+GTA++ + +P VS+ L ++ +GR++ AEF++FYLLN Y P
Sbjct: 286 FWTCSHSKLGYSGTAIVSR--VKPLSVSYGL--GIADHDSEGRLVTAEFDSFYLLNAYVP 341
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N+G + S+ R +WD + ++ + KP+I GDLN +H+EID+ +P A +
Sbjct: 342 NSGDGLKRLSY-RVSQWDLSLSNYMKELEKSKPVILNGDLNCAHQEIDIYNP---AGNRR 397
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 220
N GFT ER+ F +D++R H + G++ W G+
Sbjct: 398 NA------------GFTDEERQSFETNFLSRGFVDSFRKQHPDV---VGYTYWGYRHGGR 442
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K R+DYF+VSE + D++ + + GSDHCP+ L L
Sbjct: 443 KTNKGWRLDYFLVSESISDQVHDSYI------VPDVTGSDHCPIGLVL 484
>gi|288929660|ref|ZP_06423504.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
gi|288329165|gb|EFC67752.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
Length = 249
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 116/233 (49%), Gaps = 34/233 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ AD K Y+GTA+ + +P VS+ + +++ +GRVI E TF+L+
Sbjct: 47 FDGYDSFWNYADKKGYSGTAIYTRH--KPLNVSYGIGID--QHDHEGRVITLEMPTFFLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ +EE R +W+ Q ++ KP+I CGD+NV+H+EID+ +P
Sbjct: 103 TVYTPNS--QEELRRLDYRMQWEDDFQAYLHNLDKCKPVIVCGDMNVAHQEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++ +L G D +R+ + E + +S WS
Sbjct: 158 ------------KTNRRNAGFTDEERQKMTQLLDAG-FTDTFRWKYPE---EVTYSWWSY 201
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VS L+ ++ ++ GSDHCPV L L
Sbjct: 202 RFKARERNTGWRIDYFLVSNRLQAEVLDAKIH------TDILGSDHCPVELLL 248
>gi|254555843|ref|YP_003062260.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|380031793|ref|YP_004888784.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|418274434|ref|ZP_12889932.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448820389|ref|YP_007413551.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
gi|254044770|gb|ACT61563.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|342241036|emb|CCC78270.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|376010000|gb|EHS83326.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448273886|gb|AGE38405.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
Length = 254
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +W+ A+ K Y+GTA+ K +P V++ + +++ +GRVI E+ +Y+L
Sbjct: 47 FPGYYQYWNYAERKGYSGTAIFTKH--EPLNVTYGI--GVPEFDDEGRVITLEYADYYVL 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+G E R++W+ ++ S KPLI+CGDLNV+HE ID+ +
Sbjct: 103 TCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPLIFCGDLNVAHENIDLKNW--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
+ + GFT ER +F +L G D +R + ++ D WS
Sbjct: 158 ------------RSNHHSAGFTDEERTKFDRLLAAG-YTDTFRHFYPDQ-TDIYSWWSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFI S++L +++ + +GSDHCPV L++
Sbjct: 204 GHARDNNSGWRIDYFITSQQLDSQLLNARIHNE------IFGSDHCPVELDI 249
>gi|212697551|ref|ZP_03305679.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
gi|212675454|gb|EEB35061.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
Length = 275
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 105/223 (47%), Gaps = 30/223 (13%)
Query: 49 ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 108
A YAG KK F+P +S+ + + R+I EFE FYL Y PN G
Sbjct: 78 ARKSYAGCLTFYKKEFEPI-ISYPTLDAPDTMDQEARLITLEFENFYLTQVYTPNAG--S 134
Query: 109 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 167
+ R+ WDK+ ++ + KP+I CGD NV+H+EID+ HPE
Sbjct: 135 GLSRLDLRQVWDKKYANYLEKLDQNKPVIACGDFNVAHKEIDLKHPE------------- 181
Query: 168 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKR 225
+ GFT ER F +L +G +D +R+LH D++ ++W + K
Sbjct: 182 --NNHKSAGFTDEERSGFTNLLNKG-FVDTFRYLH--GDVEGKYTWWAQRVKTSKINNSG 236
Query: 226 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RIDYFIVS+ +K++I +M G DH P+ + +
Sbjct: 237 WRIDYFIVSDRIKEKIKESDMIDSGDR------QDHTPIYINM 273
>gi|374338532|ref|YP_005095247.1| Exodeoxyribonuclease III [Streptococcus macedonicus ACA-DC 198]
gi|372284647|emb|CCF02936.1| Exodeoxyribonuclease III [Streptococcus macedonicus ACA-DC 198]
Length = 276
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 33/237 (13%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F Y++ W A YAGT L K P+ +S+ + +GR+I EF+ F
Sbjct: 64 FPEYEVSWRSSVEPARKGYAGTMFLYKSSLTPRSISYPEIGAPDNMDSEGRIITLEFDKF 123
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ +++ + KP++ GD NV+H+EID++HP
Sbjct: 124 FVTQVYTPNAG--DGLKRLAERQIWDEKYADYLAELDQVKPVLATGDYNVAHKEIDLAHP 181
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L +G D +R++H D+ +SW
Sbjct: 182 S------------SNRR---SPGFTDEERAGFTNLLAKG-FTDTFRYIH--GDVPGVYSW 223
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S + D+I EM G DH P+ LE+
Sbjct: 224 WAQRSKTSKINNSGWRIDYWLTSSRIADKITKSEMIDSGAR------QDHTPIVLEI 274
>gi|416999368|ref|ZP_11939959.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333976808|gb|EGL77670.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 251
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 131/270 (48%), Gaps = 33/270 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMR-ALSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA +K ++ EL D +E KL + +L P ++ Y W S Y+GTA+
Sbjct: 11 LRAAVTKGFMESFNELDADIFCLQETKLQPDQISLELPGYEQY--WNSAVKKGYSGTAVF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V+ + +++ +GRVI AE++ FYL+ Y PN+ + E R W
Sbjct: 69 TR--IKPLSVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMNW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + ++L+ K P+I CGDLNV+H+EID+ +P K + GF+
Sbjct: 123 EDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNP---------------KTNRKNAGFS 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER + +L G D +R L+ + + WS + R RIDYFI S+ L
Sbjct: 168 DEERAKMTELLGAG-FTDTFRHLYPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLD 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
D+I ++ + +GSDHCPV L +
Sbjct: 226 DKIQEAKIH------QQIFGSDHCPVELVI 249
>gi|328870805|gb|EGG19178.1| transcription factor IIIC-gamma subunit [Dictyostelium
fasciculatum]
Length = 1238
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 118/254 (46%), Gaps = 33/254 (12%)
Query: 19 DTKASREEKLILMRALSS--PPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKT 76
D +E K+ + + S P Y + + + GTALL K K +S +
Sbjct: 143 DIVCLQETKIAVAKVPKSEIPEGYTYHFNPCIEKTGHHGTALLTK----IKPISITSGIG 198
Query: 77 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ---RRRKWDKRIQEFVLQC-SG 132
K++ +GRV+ AEFE FY++N Y PN+G +E + R ++WD +++ +
Sbjct: 199 ISKHDQEGRVVTAEFEDFYVVNAYVPNSGVDRKEPLKRLGYRTKEWDVDFFKYMSDLNTK 258
Query: 133 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 192
KP++WCGDLNV+H EID+++P K + GFTI ER F L G
Sbjct: 259 KPVVWCGDLNVAHTEIDLANP---------------KSNSRTAGFTIEERTSFSGHLNSG 303
Query: 193 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 252
ID +R + K F WS + + R+DYFIV I A ++
Sbjct: 304 -FIDTHRHFNPGKTGTYTF-WSYMGGARAKNAGWRLDYFIVPATFIGSIAASFIRSK--- 358
Query: 253 LEGFYGSDHCPVSL 266
GSDHCP+ +
Sbjct: 359 ---VQGSDHCPIGI 369
>gi|145534702|ref|XP_001453095.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420795|emb|CAK85698.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 32/232 (13%)
Query: 40 KNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K+Y ++ + +K Y+G A+ K K +S + K++ +GR + AE+E FYL+
Sbjct: 141 KHYFLYLNFCKNKGGYSGVAIASK----VKPISVKCDIGISKHDQEGRTLTAEYERFYLV 196
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN G K E + R ++WD Q ++ KP I CGDLNVSH EID+++P
Sbjct: 197 ACYVPNAGQKLERLDY-RTKEWDVDFQNYLEDLRKKKPTILCGDLNVSHHEIDLANP--- 252
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
NK+ GFT ER +F L++G +D++R LH ++ FS N
Sbjct: 253 ---------AGNKK---TAGFTQEERDQFTNYLQKG-WVDSFRHLHPKEVKYSYFSARFN 299
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K K R+DYFI+++E D II ++ GSDH P+ E+
Sbjct: 300 S--KQSNKGWRLDYFIINKESTDAIIMSDIN------TAVEGSDHVPIECEV 343
>gi|399925203|ref|ZP_10782561.1| exodeoxyribonuclease III [Peptoniphilus rhinitidis 1-13]
Length = 254
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 33/231 (14%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
+Y +++ A+ K Y+GTA+ KK +P V++ + +++ +GRVI EFE FY +
Sbjct: 52 HYYEFYNYAEKKGYSGTAIFSKK--EPISVNYGI--GIDEHDKEGRVITLEFENFYFVTC 107
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN+ K E + R+ W+ + ++ + K +I CGDLNV+H+EID+++P
Sbjct: 108 YTPNSKRKLERLDY--RQVWEDDFRNYLNELRKNKEVILCGDLNVAHKEIDLANP----- 160
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNP 217
N++ GFT ER++F +LK G ID +R+ + D+ +S WS
Sbjct: 161 -------STNRK---SAGFTDEEREKFTELLKNG-YIDTFRYFY--PDLKDEYSWWSYFA 207
Query: 218 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VSE L+ ++ ++ + GSDHCPV L++
Sbjct: 208 KSRERNVGWRIDYFVVSEGLEKHLVDAKIHQEVM------GSDHCPVELKI 252
>gi|348524661|ref|XP_003449841.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Oreochromis niloticus]
Length = 310
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 125/238 (52%), Gaps = 31/238 (13%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
++S P ++ W + D + Y+G A+L K +P KV++ + K +++ +GRVI AEF
Sbjct: 101 ITSMPEYPHKYWAASGDKEGYSGVAMLCKT--EPIKVTYGIGKE--EHDKEGRVITAEFP 156
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
+FYL+ Y PN R+ WD + ++ + KPL+ CGDLNV+H+EID+
Sbjct: 157 SFYLVTAYVPNAS--RGLVRLDYRKTWDVDFRAYLSELDMQKPLVLCGDLNVAHQEIDLK 214
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ F +L G +D++R L+ E+ F
Sbjct: 215 NPK------------GNKKN---AGFTPEEREGFSQLLAAG-FVDSFRELYPEQTNAYTF 258
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S L + +++ + GSDHCP++L ++
Sbjct: 259 -WTYMMNARSKNVGWRLDYFVLSSSLLPGLCDSKIRNKAM------GSDHCPITLHIA 309
>gi|308175792|ref|YP_003922497.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|384161680|ref|YP_005543753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|384166602|ref|YP_005547981.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|384170793|ref|YP_005552171.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
gi|307608656|emb|CBI45027.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|328555768|gb|AEB26260.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|328914157|gb|AEB65753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|341830072|gb|AEK91323.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
Length = 252
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 125/258 (48%), Gaps = 35/258 (13%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE K D +E K+ + P + Y +W+ A K Y+GTA+ K +P +VS+
Sbjct: 25 QETKADILCLQETKVQDGQVSLQP--EGYHDYWNYAVKKGYSGTAVFSK--VKPLQVSYG 80
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 131
L ++ +GRVI EFE +++N Y PN K R +W+ ++++ +
Sbjct: 81 LGID--DHDQEGRVITLEFENVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDQ 136
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP+I CGDLNV+H EID+ +P K + GF+ ER+ F +L
Sbjct: 137 KKPVILCGDLNVAHREIDLKNP---------------KANRKNAGFSDQEREAFSVLLNA 181
Query: 192 GRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 250
G D++R+L+ D + +S WS + + R+DY IVS+ LK RI +
Sbjct: 182 G-FTDSFRYLY--PDQEGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKQRITQAAI---- 234
Query: 251 IELEGFYGSDHCPVSLEL 268
GSDHCPV + L
Sbjct: 235 --CADIMGSDHCPVEMTL 250
>gi|410622567|ref|ZP_11333400.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
gi|410157921|dbj|GAC28774.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
Length = 255
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 33/234 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K Y ++ + A K Y+GT+++ + K + + + +++ +GRV+ AEF+ FYL+
Sbjct: 50 LKGYHVFTNSAIKKGYSGTSIITR----VKPIDVTRDIGIEEHDQEGRVLCAEFDAFYLV 105
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+G + S+ R +WD +V Q KP++ CGDLNV+H +ID++ P+
Sbjct: 106 TVYTPNSGDSLKRLSY--RTQWDADFLSYVKQLEALKPVVVCGDLNVAHRDIDIARPK-- 161
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
PN G+T E +++ G +D +R L + +SW
Sbjct: 162 ----------PNYNK--SAGYTQKEIDGIDSLIAAG-YVDTFRHLFPDT---VKYSWWSY 205
Query: 217 PIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
G + R R+DYF+VS +LK++I ++ +GSDHCPVS++LS
Sbjct: 206 RAGARERNVGWRLDYFLVSHKLKEQISGADIH------NDIHGSDHCPVSVQLS 253
>gi|269798609|ref|YP_003312509.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282849823|ref|ZP_06259207.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294792738|ref|ZP_06757885.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
gi|269095238|gb|ACZ25229.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282580760|gb|EFB86159.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294456637|gb|EFG25000.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
Length = 251
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 131/270 (48%), Gaps = 33/270 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMR-ALSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA +K ++ EL D +E KL + +L P ++ Y W S Y+GTA+
Sbjct: 11 LRAAVTKGFMESFNELDADIFCLQETKLQPDQISLELPGYEQY--WNSAVKKGYSGTAVF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V+ + +++ +GRVI AE++ FYL+ Y PN+ + E R W
Sbjct: 69 TR--IKPLSVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + ++L+ K P+I CGDLNV+H+EID+ +P K + GF+
Sbjct: 123 EDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNP---------------KTNRKNAGFS 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER + +L G D +R L+ + + WS + R RIDYFI S+ L
Sbjct: 168 DEERAKMTELLGAG-FTDTFRHLYPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLD 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
D+I ++ + +GSDHCPV L +
Sbjct: 226 DKIQEAKIH------QQIFGSDHCPVELVI 249
>gi|390176534|ref|XP_003736152.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858704|gb|EIM52225.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 675
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 30/229 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
Y +W YAG A+ K P V + + +++ GR+I AE+E FYL+N Y
Sbjct: 475 YHPYWLCMPGGYAGVAIYSK--IMPINVEYGIGNE--EFDDVGRMITAEYEKFYLINVYV 530
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+G K + + R +W+K +V + K ++ CGD+NVSH EID+ +P
Sbjct: 531 PNSGRK--LVNLEARMRWEKLFHSYVQKLDALKAVVICGDMNVSHNEIDLENP------- 581
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GFT ER + +L G +D +R L+ +K + W+ +
Sbjct: 582 --------KTNTKNAGFTKEERDKMTELLGLG-FVDTFRHLYPDKKGAYTY-WTYMSNAR 631
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R R+DY IVSE R++ H I + GSDHCP+++ L+
Sbjct: 632 ARNVGWRLDYCIVSERFVPRVV-----DHVIRKQ-LLGSDHCPITVFLN 674
>gi|320354727|ref|YP_004196066.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
gi|320123229|gb|ADW18775.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
Length = 481
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 32/227 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
YQ +W A K YAGTA+ K P +V + +E+ +++ +GRV+ E+ FYL+NTY
Sbjct: 282 YQSFWHSAKKKGYAGTAVFSK--IPPLRVLYGMEQP--QFDDEGRVLTLEYPDFYLINTY 337
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
+PN + E ++++++ + ++ + S K ++ CGDLNV+H+EID+++P
Sbjct: 338 SPNA--QPELKRLAFKQEFNRTLLAYMDRLRSEKTVVLCGDLNVAHKEIDLANP------ 389
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + PGF+ ER ++ G +D +R ++E +S+ N
Sbjct: 390 ---------KANVKNPGFSEQERAWMDELIAAG-YVDTFRQFNQEAGQYTWWSYRFNARA 439
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
K G RIDYFIV +DR++ + G GSDHCPVSL
Sbjct: 440 KNIG--WRIDYFIVDGSSRDRVLEAAIHGE------ITGSDHCPVSL 478
>gi|405982630|ref|ZP_11040941.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
gi|404389339|gb|EJZ84415.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
Length = 285
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 134/304 (44%), Gaps = 67/304 (22%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ AA K ++ L D A +E KL + S P Y +WS A+ K Y+GTA+
Sbjct: 11 LRAAVKKGFEESVAALDADIIALQETKLQEGQIDLSLP--GYFQFWSYAERKGYSGTAVF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
++ +P + L +AL E GR++ EF+ ++ ++ Y PN + E R W
Sbjct: 69 CRQ--KPLRALHGLGDSALDDE--GRIVALEFDDYWFVDVYTPNA--QNELARIDHRMAW 122
Query: 120 DKRIQEF--------------VLQC---------------------SGKPLIWCGDLNVS 144
D ++F V C S KP++ CGD NV+
Sbjct: 123 DDAFRDFCKNLEKGAIPAGVAVQDCAEGEGHVSISELPLTQEGERTSAKPVVMCGDFNVA 182
Query: 145 HEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKE 204
H+EID+ +P PN+ G GF+ ER++F +L G +D +R LH +
Sbjct: 183 HQEIDLKNP------------GPNR---GNAGFSDEEREKFTRLLDAG-FVDTFRVLHPD 226
Query: 205 KDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 264
+ + WS + RIDYF+VSE L+D I M GSDHCPV
Sbjct: 227 EAGAYSW-WSYRFNARKNNAGWRIDYFLVSESLRDAIHDARMHAD------IMGSDHCPV 279
Query: 265 SLEL 268
S+EL
Sbjct: 280 SVEL 283
>gi|373115658|ref|ZP_09529827.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670180|gb|EHO35266.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
Length = 250
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 39/233 (16%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+++W+ A+ K Y+GTA+ + +P V+ + A +E GRVI AEF+ F+L+ Y
Sbjct: 50 YRLFWNSAEKKGYSGTAVFTR--VEPLSVTCGIGLDAHDHE--GRVITAEFDGFFLVCCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN + E R +W+ + ++++ K P++ CGDLNV+HEEID+ +P
Sbjct: 106 TPNA--QNELARIDYRMQWEDDFRAYLMELDKKKPVVLCGDLNVAHEEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + G GF+ ER + +L G D +R L+ ++ + WS
Sbjct: 158 ---------KSNRGSAGFSDQERGKMTELLSSG-FTDTFRALYPDRTGAYTW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEEL----KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFIVS+ L +D II E++ GSDHCPV L L
Sbjct: 207 RKNNAGWRIDYFIVSDRLLPRVRDNIIHAEVE----------GSDHCPVELVL 249
>gi|451344782|ref|YP_007443413.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449848540|gb|AGF25532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 252
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 125/258 (48%), Gaps = 35/258 (13%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE K D +E K+ S + Y +W+ A K Y+GTA+ K+ +P V +
Sbjct: 25 QETKADILCLQETKV--QDGQVSLQLEGYHDYWNYAVKKGYSGTAVFSKE--KPLHVFYG 80
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 131
L ++ +GRVI EFE +++N Y PN K R +W+ +E++ +
Sbjct: 81 LGID--DHDQEGRVITLEFENLFVVNCYTPNA--KRGLERIDYRLQWEADFKEYLQKLDR 136
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP+I CGDLNV+H EID+ +P K + GF+ ER+ F A+L
Sbjct: 137 KKPVILCGDLNVAHREIDLKNP---------------KANRKNAGFSDQEREAFSALLNT 181
Query: 192 GRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 250
G D++R+L+ D + G+S WS + + R+DY IVS+ LK RI +
Sbjct: 182 G-FTDSFRYLY--PDREGGYSWWSYRTNAREKNIGWRLDYVIVSDRLKPRISEAAI---- 234
Query: 251 IELEGFYGSDHCPVSLEL 268
GSDHCPV + +
Sbjct: 235 --CADIMGSDHCPVEMTV 250
>gi|42518122|ref|NP_964052.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|385824990|ref|YP_005861332.1| exodeoxyribonuclease III [Lactobacillus johnsonii DPC 6026]
gi|41582406|gb|AAS08018.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|329666434|gb|AEB92382.1| exodeoxyribonuclease III [Lactobacillus johnsonii DPC 6026]
Length = 275
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 36/239 (15%)
Query: 39 FKNYQIWWSLADSK----YAGTALLVKKCFQPKKVSFSL-EKTALKYEPDGRVILAEFET 93
F NY W ++ YAGT L K P+ ++ + YE GR++ EF+
Sbjct: 64 FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTKPTIGAPDTMDYE--GRILTLEFDN 121
Query: 94 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSH 152
+Y+ Y PN+G E + R+ WD++ E++ + KP+I GD NV+H ID+ H
Sbjct: 122 YYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQKLDKSKPVIASGDYNVAHTPIDLKH 179
Query: 153 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 212
PE + GFT ER+ F +LK G D +R +H +++ +S
Sbjct: 180 PE---------------NNHHNAGFTDEERQGFDKLLKLG-FTDTFRKVH--GNVEGVYS 221
Query: 213 WSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W + K RIDY+IVS+ + D++ EM G DHCP+ LE++
Sbjct: 222 WWAQRVRTSKDNNSGWRIDYYIVSDRIADQVTKSEMIDTGDR------KDHCPIMLEIN 274
>gi|325846697|ref|ZP_08169612.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481455|gb|EGC84496.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 275
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 105/223 (47%), Gaps = 30/223 (13%)
Query: 49 ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 108
A YAG KK F+P +S+ + + R+I EF+ FYL Y PN G
Sbjct: 78 ARKSYAGCLTFYKKEFEPI-ISYPTLDAPDTMDQEARIITLEFDNFYLTQVYTPNAG--S 134
Query: 109 EENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 167
+ R+ WDK+ ++ + KP+I CGD NV+H+EID+ HPE
Sbjct: 135 GLSRLDLRQVWDKKYANYLEKLDQNKPVIACGDFNVAHKEIDLKHPE------------- 181
Query: 168 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKR 225
+ GFT ER F +L +G +D +R+LH D++ ++W + K
Sbjct: 182 --NNHKSAGFTDEERSGFTNLLNKG-FVDTFRYLH--GDVEGKYTWWAQRVKTSKINNSG 236
Query: 226 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RIDYFIVS+ +K++I +M G DH P+ + +
Sbjct: 237 WRIDYFIVSDRIKEKIKESDMIDSGDR------QDHTPIYINI 273
>gi|392567192|gb|EIW60367.1| hypothetical protein TRAVEDRAFT_45617 [Trametes versicolor
FP-101664 SS1]
Length = 362
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 36/235 (15%)
Query: 45 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 103
+W+++D K Y+GTA+L K P V ++L GR++ EF + Y++ TY N
Sbjct: 151 YWAISDKKTYSGTAILSK--VDPLSVDYTLPGHPDPKSVKGRIVTLEFASCYVVGTYVVN 208
Query: 104 NGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162
G + +++W+ + ++ + K P+IW GDLNV+ +D+++P
Sbjct: 209 AG--TGLKTLDAKKEWNTHFEAYIRELDAKKPVIWTGDLNVAPTALDLTNP--------- 257
Query: 163 GYVPPNKEDWGQ-PGFTIAERKRFGAILKEGR-------LIDAYRFLHKEKDMDCGFSWS 214
K +W + PG+T AE + IL + +D +R LH FS+
Sbjct: 258 ------KPNWNKTPGYTEAETSSYARILNTSKEEVDAPQFVDVWRKLHPALKHYTYFSYR 311
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
N + +G R+D F+VS L++R+ CE++ E + SDHCPV +EL+
Sbjct: 312 FN--CREKGIGWRLDMFVVSARLEERVKMCEIRS-----EVYGASDHCPVVMELA 359
>gi|346473687|gb|AEO36688.1| hypothetical protein [Amblyomma maculatum]
Length = 350
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 114/218 (52%), Gaps = 30/218 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+G ALL K +P V + + K++ +GRVI AEF+ FYL+ Y PN G K
Sbjct: 161 YSGVALLAK--IKPLDVKYGIGME--KHDKEGRVITAEFDKFYLVAVYVPNAGKKLVRLD 216
Query: 113 FQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+ R +WDK + ++ + K ++ CGD+NV+H+EID+++P+ NK++
Sbjct: 217 Y--RMEWDKDFRAYLKELEAKKHVVLCGDMNVAHQEIDLANPK------------TNKKN 262
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
GFT ER F A+L+ G +D++R L+ +K F W+ + + R+DYF
Sbjct: 263 ---AGFTQEERDGFTALLESG-FVDSFRHLYPDKKGAYTF-WTYMMNARAKNVGWRLDYF 317
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
I+S+ L I + GSDHCPV L L+
Sbjct: 318 ILSKALASNISDSLIHSQ------VMGSDHCPVILLLN 349
>gi|294794491|ref|ZP_06759627.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
gi|294454821|gb|EFG23194.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
Length = 251
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 33/270 (12%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMR-ALSSPPFKNYQIWWSLADSKYAGTALL 59
+ AA +K ++ EL D +E KL + +L P ++ Y W S Y+GTA+
Sbjct: 11 LRAAVTKGFMESFNELDADIFCLQETKLQPDQISLELPGYEQY--WNSAVKKGYSGTAVF 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+ +P V+ + +++ +GRVI AE++ FYL+ Y PN+ + E R W
Sbjct: 69 TR--IKPLSVTNGI--GIEEHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTW 122
Query: 120 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ + ++L+ K P+I CGDLNV+H+EID+ +P+ N+++ GF+
Sbjct: 123 EDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNPKM------------NRKN---AGFS 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
ER + +L G D +R L+ + + WS + R RIDYFI S+ L
Sbjct: 168 DEERAKMTELLGAG-FTDTFRHLYPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLD 225
Query: 239 DRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
D+I ++ + +GSDHCPV L +
Sbjct: 226 DKIQEAKIH------QQIFGSDHCPVELVI 249
>gi|390176532|ref|XP_001356149.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|388858703|gb|EAL33209.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 648
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 30/229 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
Y +W YAG A+ K P V + + +++ GR+I AE+E FYL+N Y
Sbjct: 448 YHPYWLCMPGGYAGVAIYSK--IMPINVEYGIGNE--EFDDVGRMITAEYEKFYLINVYV 503
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+G K + + R +W+K +V + K ++ CGD+NVSH EID+ +P
Sbjct: 504 PNSGRK--LVNLEARMRWEKLFHSYVQKLDALKAVVICGDMNVSHNEIDLENP------- 554
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GFT ER + +L G +D +R L+ +K + W+ +
Sbjct: 555 --------KTNTKNAGFTKEERDKMTELLGLG-FVDTFRHLYPDKKGAYTY-WTYMSNAR 604
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
R R+DY IVSE R++ H I + GSDHCP+++ L+
Sbjct: 605 ARNVGWRLDYCIVSERFVPRVV-----DHVIRKQ-LLGSDHCPITVFLN 647
>gi|343524816|ref|ZP_08761774.1| exodeoxyribonuclease III [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343398465|gb|EGV10998.1| exodeoxyribonuclease III [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 275
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y+ W A YAGT L K+ PK ++F + +GR+I EFE F
Sbjct: 64 FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-ITFPEIGAPSTMDAEGRIITLEFEKF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + + R+ WDK+ +++ KP++ GD NV+H EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTALDIEKPVLATGDYNVAHNEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERSGFANLLNRG-FTDTFRYIH--GDIPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S + D++ EM G DH P+ LE+
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR------QDHTPIVLEI 273
>gi|386748979|ref|YP_006222186.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384555222|gb|AFI03556.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 250
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 114/233 (48%), Gaps = 31/233 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G K +P VS+ + +++ +GRVI EF+ FYL+
Sbjct: 47 FKGYFDFWNCALKKGYSGVVTFSKT--KPLNVSYGI--GIEEHDTEGRVITCEFDKFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QRALARLEYRMSWEIEFRKFLKALELKKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R + K+ + WS
Sbjct: 158 ------------KANRKNAGFSDEEREKFSELLNAG-FIDTFRHFYPTKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYF+ S LK I ++ E GSDHCPV LEL+
Sbjct: 204 QQSRERNIGWRIDYFLCSNSLKIEIKDAKI------YESILGSDHCPVGLELN 250
>gi|227499267|ref|ZP_03929379.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
gi|227218676|gb|EEI83907.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
Length = 273
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWW-SLADS---KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y +W S DS YAGT L KK + K+ SF + +GR++ E + +
Sbjct: 64 FPDYDYFWVSSRDSARKSYAGTMTLYKKGLKVKE-SFPEIGAPDTMDLEGRILTLELDDY 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHP 153
Y + Y PN G E N R WD + +++ + KP+I GD NV+HEEID++HP
Sbjct: 123 YFVQVYTPNAG--GELNRLPLREIWDLKFADYLEELDKIKPVIATGDFNVAHEEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
E N ++ GFT ER+ F +L G D++R+L+ KD++ ++W
Sbjct: 181 E-------NNHM--------SAGFTDEERRGFTNLLNRG-FTDSFRYLN--KDLEGAYTW 222
Query: 214 SGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDYF+VS+ L D++ M G DH P+ LE+
Sbjct: 223 WAQRVKTSKINNSGWRIDYFLVSDRLIDKVKDSTMIDSGQR------QDHTPIMLEI 273
>gi|225569150|ref|ZP_03778175.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
gi|225161949|gb|EEG74568.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
Length = 250
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 34/237 (14%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L +P + Y W+ A+ K Y+GTA+ KK + +SF+ +++ +GRVI EFE
Sbjct: 45 LETPGYFQY---WNYAERKGYSGTAVFTKK----EPLSFTCGIGIEEHDKEGRVITLEFE 97
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVS 151
FY + Y PN+ + E R +W+ ++ + KP+I+CGDLNV+ EEID+
Sbjct: 98 EFYFVTVYTPNS--QSELARLSYRMEWEDAFLAYLKKLEEKKPVIFCGDLNVAAEEIDLK 155
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P K + GFT ER++F I G +D +R+ + +++ +
Sbjct: 156 NP---------------KTNRKNAGFTDEEREKFRKIKASG-FVDTFRYFYPDEEGIYSW 199
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
WS + + RIDYF VS+ LK+R+ + + GSDHCPV L+L
Sbjct: 200 -WSYRFRAREKNAGWRIDYFCVSQSLKERLEDARIHTDVM------GSDHCPVELDL 249
>gi|342214112|ref|ZP_08706820.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 780 str.
F0422]
gi|341595797|gb|EGS38436.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 780 str.
F0422]
Length = 175
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 26/191 (13%)
Query: 79 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 137
+++ +GRVI AE+E FYL+ Y PN+ + E + R +W+ +E++L K P+I
Sbjct: 8 EHDQEGRVITAEYEKFYLVTCYTPNS--QRELARLEYRMEWEVAFREYLLALDAKKPVIL 65
Query: 138 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 197
CGDLNV+H+EID+ +P K + GF+ ER++ +L G D
Sbjct: 66 CGDLNVAHQEIDLKNP---------------KTNRKNAGFSDEEREKMTELLAAG-FTDT 109
Query: 198 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 257
+R+L+ + +D WS + R RIDYF+VS + D+I ++ +
Sbjct: 110 FRYLYPDA-VDAYSWWSYMGKARERNVGWRIDYFLVSNSIADKIQEAKIHA------DIF 162
Query: 258 GSDHCPVSLEL 268
GSDHCPV L +
Sbjct: 163 GSDHCPVELVM 173
>gi|325285209|ref|YP_004260999.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
gi|324320663|gb|ADY28128.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
Length = 254
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 127/253 (50%), Gaps = 38/253 (15%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 77
+TKA E + +ALS P +N+ + + A+ K Y+GTA L K +E
Sbjct: 35 ETKAQDNE---VAKALS--PLENFSLASNSANKKGYSGTATLSSTKPLTIKADIGIEA-- 87
Query: 78 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLI 136
++ +GRV+ E+E FYL+N Y PN+G K + + R++WDK +++ KP+I
Sbjct: 88 --HDTEGRVLCTEYENFYLVNVYVPNSGQKLDR--LEYRKQWDKDFLDYLKNLEKKKPVI 143
Query: 137 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP-GFTIAERKRFGAILKEGRLI 195
CGD NV+H+ ID+ + +K ++ + G+T E + +G +
Sbjct: 144 ACGDFNVAHKAIDLKN---------------DKSNYNKTAGYTQTEIDGMNNFIADG-FV 187
Query: 196 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 255
D++R LH ++ + WS + R RIDYF+VS+ +KD++ +
Sbjct: 188 DSFRMLHPDEVVYT--FWSYRFKSRERNTGWRIDYFLVSQSIKDKVKEVTV------FSD 239
Query: 256 FYGSDHCPVSLEL 268
GSDHCP+ L++
Sbjct: 240 IMGSDHCPIGLKI 252
>gi|227889124|ref|ZP_04006929.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
gi|227850353|gb|EEJ60439.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
Length = 275
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 36/239 (15%)
Query: 39 FKNYQIWWSLADSK----YAGTALLVKKCFQPKKVSFSL-EKTALKYEPDGRVILAEFET 93
F NY W ++ YAGT L K P+ ++ + YE GR++ EF+
Sbjct: 64 FPNYDYVWRSSEEPARKGYAGTMFLYKNTLTPEVTKPAIGAPDTMDYE--GRILTLEFDN 121
Query: 94 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSH 152
+Y+ Y PN+G E + R+ WD++ E++ + KP+I GD NV+H ID+ H
Sbjct: 122 YYVTQVYTPNSG--NELKRLKDRQIWDEKYTEYLQKLDKSKPVIASGDYNVAHTPIDLKH 179
Query: 153 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 212
PE + GFT ER+ F +LK G D +R +H +++ +S
Sbjct: 180 PE---------------NNHHNAGFTDEERQGFDKLLKLG-FTDTFRKVH--GNVEGVYS 221
Query: 213 WSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W + K RIDY+IVS+ + D++ EM G DHCP+ LE++
Sbjct: 222 WWAQRVRTSKDNNSGWRIDYYIVSDRIADQVTKSEMIDTGDR------KDHCPIMLEIN 274
>gi|329768092|ref|ZP_08259601.1| exodeoxyribonuclease III [Gemella haemolysans M341]
gi|328838247|gb|EGF87859.1| exodeoxyribonuclease III [Gemella haemolysans M341]
Length = 254
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 120/235 (51%), Gaps = 33/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +++ A+ K Y+GTA+ K +P V++ + +++ +GRVI E++ F+ +
Sbjct: 47 FNGYYSYFNYAERKGYSGTAIYTKH--EPINVTYGI--GIEEHDTEGRVITLEYDKFFFI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+G E + R W++ + ++L+ + K ++ CGDLNV+H EID+ +P
Sbjct: 103 TVYTPNSG--SELKRLEYRMSWEEDFKNYLLELNKTKGIVVCGDLNVAHTEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++F +L G ID +R+ + D+ +S WS
Sbjct: 158 ------------KSNTKNAGFTQEEREKFTKLLDAG-FIDTFRYYN--PDLTGAYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ RIDYF+VS +L+ + + + +GSDHCPV L L +
Sbjct: 203 RFNARKNNAGWRIDYFLVSRDLEKYLESAAIHNE------IFGSDHCPVELVLKD 251
>gi|313885686|ref|ZP_07819435.1| exodeoxyribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
gi|312619051|gb|EFR30491.1| exodeoxyribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
Length = 275
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 120/265 (45%), Gaps = 44/265 (16%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK----YAGTALLVKKCFQPKKV 69
QE K K ++ L ++ L FK+Y + W ++ YAGT L K +PK V
Sbjct: 43 QETKLSAKGPTQKHLEILADL----FKDYMVVWRSSEEPARKGYAGTMFLYKHDLEPK-V 97
Query: 70 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEF 126
+F + + +GR+I EF+ FY+ Y PN G N+ +R R+ WD++ +
Sbjct: 98 TFPEIEAPSPMDAEGRMITLEFDDFYVTQVYTPNAG-----NALKRLADRQIWDQQYAAY 152
Query: 127 VLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 185
+ K ++ GD NV+H EID++HPE + GFT ER F
Sbjct: 153 LASLDQDKIVLATGDFNVAHHEIDLAHPE---------------NNHHSAGFTDEERAGF 197
Query: 186 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIA 243
+L G D +R LH D+ ++W + K RIDY++VS DR+I
Sbjct: 198 TQLLAHG-FTDTFRHLH--GDVTGAYTWWAQRVKTSKINNSGWRIDYWLVSNRAVDRVIQ 254
Query: 244 CEMQGHGIELEGFYGSDHCPVSLEL 268
E+ G DH P+ LE+
Sbjct: 255 SEIIDSGTR------QDHTPILLEI 273
>gi|365843219|ref|ZP_09384168.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
gi|364573045|gb|EHM50567.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
Length = 250
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 118/233 (50%), Gaps = 39/233 (16%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+++W+ A+ K Y+GTA+ + +P V+ + A +E GRVI AEF+ F+L+ Y
Sbjct: 50 YRLFWNSAEKKGYSGTAVFTR--VEPLSVTCGIGLDAHDHE--GRVITAEFDGFFLVCCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN + E R +W+ + ++++ K P++ CGDLNV+HEEID+ +P
Sbjct: 106 TPNA--QNELARIDYRMQWEDDFRAYLMELDKKKPVVLCGDLNVAHEEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+ + G GF+ ER + +L G D +R L+ ++ + WS
Sbjct: 158 ---------RSNRGNAGFSDQERGKMTELLSSG-FTDTFRALYPDRTGAYTW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEEL----KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFIVS+ L +D II E++ GSDHCPV L L
Sbjct: 207 RKNNAGWRIDYFIVSDRLLPRVRDNIIHAEVE----------GSDHCPVELVL 249
>gi|319939581|ref|ZP_08013940.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
gi|319811170|gb|EFW07476.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
Length = 275
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 115/262 (43%), Gaps = 38/262 (14%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 69
QE K ++ L ++ L F NYQ+ W A YAGT L K P +
Sbjct: 43 QETKLSANGPTKKHLTILEEL----FPNYQLTWRSSIDPARKGYAGTMFLYKNNLTPI-I 97
Query: 70 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 129
+F + +GR+I EF+ F++ Y PN G + R+ WD++ +++
Sbjct: 98 TFPEIGAPSTMDAEGRIITLEFDNFFVTQVYTPNAG--DGLKRLVERQVWDQKYADYLTT 155
Query: 130 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 188
KP++ GD NV+H EID++HP N+ PGFT ER F +
Sbjct: 156 LDEKKPVLATGDYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNL 200
Query: 189 LKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 246
L G D +R++H D+ +SW + K RIDY++ S + D++ EM
Sbjct: 201 LNRG-FTDTFRYIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEM 257
Query: 247 QGHGIELEGFYGSDHCPVSLEL 268
G DH P+ LE+
Sbjct: 258 IDSGTR------QDHTPIVLEI 273
>gi|233305|gb|AAB19427.1| Rrp1=recombination repair protein 1 [Drosophila, Peptide, 253 aa]
Length = 253
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 30/226 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
Y +W YAG A+ K P V + + +++ GR+I AE+E FYL+N Y
Sbjct: 53 YHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EFDDVGRMITAEYEKFYLINVYV 108
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+G K + + R +W+K Q +V + KP++ CGD+NVSH ID+ +P
Sbjct: 109 PNSGRKLV--NLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENP------- 159
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GFT ER + +L G +D +R L+ ++ F W+ +
Sbjct: 160 --------KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLYPDRKGAYTF-WTYMANAR 209
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
R R+DY +VSE +++ E++ + GSDHCP+++
Sbjct: 210 ARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GSDHCPITI 249
>gi|241888975|ref|ZP_04776279.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
gi|241864224|gb|EER68602.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
Length = 254
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 120/235 (51%), Gaps = 33/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +++ A+ K Y+GTA+ K +P V++ + +++ +GRVI E++ F+ +
Sbjct: 47 FDGYYSYFNYAERKGYSGTAIYTKH--EPLNVTYGI--GIEEHDTEGRVITLEYDKFFFI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+G E + R W++ + ++L + K ++ CGDLNV+H EID+ +P
Sbjct: 103 TVYTPNSG--SELKRLEYRMSWEEDFKNYLLALNKTKGVVVCGDLNVAHTEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++F +L G ID +R+ + D+ +S WS
Sbjct: 158 ------------KSNMKNAGFTPEEREKFTKLLDAG-FIDTFRYYN--PDLTGAYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ RIDYF+VS +L++ + + + +GSDHCPV L L +
Sbjct: 203 RFNARKNNAGWRIDYFLVSRDLEEYLESAAIHNE------IFGSDHCPVELVLKD 251
>gi|372324144|ref|ZP_09518733.1| Exodeoxyribonuclease III [Oenococcus kitaharae DSM 17330]
gi|366982952|gb|EHN58351.1| Exodeoxyribonuclease III [Oenococcus kitaharae DSM 17330]
Length = 274
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 106/224 (47%), Gaps = 32/224 (14%)
Query: 49 ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 108
A YAG L K+ QP + + +GR+IL E+ FYLLN Y PN+G +
Sbjct: 78 AKKGYAGVITLAKE--QPISFNCPTIDAPDTMDEEGRIILLEYPDFYLLNVYTPNSG--D 133
Query: 109 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 167
+ R WD + +V Q + K +I+ GDLNV+HEEID+ +P
Sbjct: 134 GLKRLEMRGLWDDNFRVYVSQLAERKAVIFSGDLNVAHEEIDLKNPS------------- 180
Query: 168 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKR 225
+ GFT ER +F +L+ G D +RF H + D +SW N + K
Sbjct: 181 --TNHQSAGFTDQERDKFTQLLEAG-FTDTWRFQHPD---DVAYSWWSQRNRMAKPNNAG 234
Query: 226 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
RIDY++VS LKD+I M G +DH P+ L+++
Sbjct: 235 WRIDYYLVSSTLKDKIKKSGMIDSGTR------ADHAPIYLQMA 272
>gi|182416804|ref|ZP_02948195.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237669009|ref|ZP_04528993.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379266|gb|EDT76765.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237657357|gb|EEP54913.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ K +S + +++ +GRVI E++ F+L+N Y
Sbjct: 53 YYDYWNYAEKKGYSGTAVFTKE----KPISVKMGLGIEEHDNEGRVITLEYDKFFLVNVY 108
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ +++ + R W+ + ++ KP+I CGDLNV+H+EID+ +P
Sbjct: 109 TPNS--QQKLARLEYRMSWEDVFRNYLKDLEKNKPVILCGDLNVAHKEIDLKNP------ 160
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
N+++ GF+ ER + +L G D +R+ + D++ +S WS
Sbjct: 161 ------SSNRKN---AGFSDEERSKMSELLNSG-FTDTFRYFY--PDIEGVYSWWSYRFN 208
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYFIVS+ L D++ ++ IE GSDHCPV LE++
Sbjct: 209 ARANNAGWRIDYFIVSQSLNDKLEDAKIHT-SIE-----GSDHCPVELEIN 253
>gi|310831095|ref|YP_003969738.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386279|gb|ADO67139.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
Length = 262
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 116/228 (50%), Gaps = 31/228 (13%)
Query: 45 WWS--LADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+WS L Y+GTA+ K+ K +S L + +GR+I EF+ +YL++ Y P
Sbjct: 63 YWSPCLVKKGYSGTAIFSKR----KPISTYLGMNQPGEDDEGRMITLEFKEYYLIHVYTP 118
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N+G + R +WDK +++ KP+I CGDLNV++E ID+++P
Sbjct: 119 NSGQGLVRLQY-RTEEWDKNFRKYCANLQKIKPIIICGDLNVANENIDLANPS------- 170
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 221
NK++ GFT ERK F L + LID +R+L+ D+ F W+ +
Sbjct: 171 -----SNKKN---AGFTDVERKSFKLTLTKLNLIDTFRYLY-PTDIKYSF-WTYYHNARP 220
Query: 222 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF+VSE+L ++ + H GSDH PV L+L+
Sbjct: 221 KNIGWRIDYFLVSEKLLPKVKDSNILTH------IMGSDHAPVILKLT 262
>gi|325679379|ref|ZP_08158964.1| exodeoxyribonuclease III [Ruminococcus albus 8]
gi|324108976|gb|EGC03207.1| exodeoxyribonuclease III [Ruminococcus albus 8]
Length = 250
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 31/218 (14%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GTA+ K +PK V++ L + +GRVI E++ FY + Y PN + E
Sbjct: 62 YSGTAVYTKN--EPKAVTYGLNGA---HTDEGRVITCEYDDFYFVCCYVPNA--QNELKR 114
Query: 113 FQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R +++ ++ ++ KP+I+CGDLNV+HEEID+ +P K +
Sbjct: 115 IDYRMEFEDDMRAYLCGLDKLKPVIYCGDLNVAHEEIDLKNP---------------KSN 159
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
G GF+ ER +F +L G D +R L+ E + WS + RIDYF
Sbjct: 160 VGNAGFSDQERGKFTELLAAG-FADTFRRLYPETTGVYSW-WSYRFNARKNNAGWRIDYF 217
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+VSE L D++ G L GSDHCPV L+++
Sbjct: 218 VVSERLMDKV------GDSKILTDVMGSDHCPVQLDIT 249
>gi|386747928|ref|YP_006221136.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554170|gb|AFI05926.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 250
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 31/233 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
FK Y +W+ A K Y+G K +P VS+ + +++ +GRV+ EF+ FYL+
Sbjct: 47 FKGYFDFWNCAIKKGYSGVVTFSKT--EPLNVSYGI--GIEEHDTEGRVVTCEFDKFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + + R W+ ++F+ KP+I CGDLNV+H EID+ +P
Sbjct: 103 NVYTPNS--QRALARLEYRMSWEVEFRKFLKNLELQKPVIVCGDLNVAHNEIDLENP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++F +L G ID +R + K+ + WS
Sbjct: 158 ------------KANRKNAGFSDEEREKFSELLNAG-FIDTFRHFYPTKEKAYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYF+ S+ LK + ++ E GSDHCPV LEL+
Sbjct: 204 QQARDKNIGWRIDYFLCSKSLKTELKDAKI------YENILGSDHCPVGLELA 250
>gi|384247332|gb|EIE20819.1| hypothetical protein COCSUDRAFT_18358, partial [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 126/258 (48%), Gaps = 40/258 (15%)
Query: 15 ELKDDTKASREEKLILMRALSSPPFKNYQIWW--SLADSKYAGTALLVKKCFQPKKVSFS 72
+LKD A+ E+ L+R P +++ ++ S+A Y+G A+L + +P V+
Sbjct: 19 KLKDSDVAACEK---LLR----PGLQDWHFYFNNSIAKKGYSGVAVLSRA--KPLSVTNG 69
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 132
L K ++ +GRVI AE+ +FY++N Y PN+G + + R WD +++
Sbjct: 70 LGKE--DHDQEGRVITAEYPSFYVVNVYVPNSGEGLKRLEY-RVGSWDVAFADYLAGLGA 126
Query: 133 -KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP+I GDLN +H+EID+ P K + GFT ERK F A L +
Sbjct: 127 KKPVILTGDLNCAHQEIDIHDP---------------KRNLKSAGFTEEERKSFSAQLLQ 171
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 251
D +R K D+ W+ + R + R+DYF+VSE L +R+ H I
Sbjct: 172 RGFKDTFR--EKYPDVVGYTYWNYRTGARVRNRGWRLDYFLVSEALAERV-------HDI 222
Query: 252 -ELEGFYGSDHCPVSLEL 268
L GSDHCPV L L
Sbjct: 223 FHLPDVQGSDHCPVGLVL 240
>gi|450062698|ref|ZP_21844475.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML5]
gi|449205430|gb|EMC06177.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML5]
Length = 275
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y + W A YAGT L K QP +++ + +GR+I EF+ F
Sbjct: 64 FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-ITYPEIGAPTTMDDEGRIITLEFDDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L++G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYIH--GDVPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 273
>gi|326804146|ref|YP_004321964.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
gi|326650889|gb|AEA01072.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
Length = 281
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 107/228 (46%), Gaps = 36/228 (15%)
Query: 49 ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 108
A YAG +L KK +P +++ + +GR+I +F FY Y PN G
Sbjct: 78 ARKSYAGNMVLYKKSLEPI-ITYPKIGAPEPMDSEGRIITLDFGAFYFTQVYTPNAG--- 133
Query: 109 EENSFQR---RRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 164
N +R R+ WD++ +++ Q KPLI GD NV+H+EID++HPE
Sbjct: 134 --NGLKRLAERQVWDEKYAQYLSQLDQEKPLIATGDFNVAHKEIDLAHPE---------- 181
Query: 165 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYR 222
+ GFT ER F +L +G D +R +H D++ +SW + K
Sbjct: 182 -----NNHKSAGFTDEERSGFTKLLDQG-FTDTFRHIH--GDVEGVYSWWAQRVKTSKIN 233
Query: 223 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
RIDYF+VS+ + + + EM G DH P+ LE+S+
Sbjct: 234 NSGWRIDYFLVSDRIANAVEKSEMIDSGTR------QDHTPIYLEISD 275
>gi|210634817|ref|ZP_03298323.1| hypothetical protein COLSTE_02250 [Collinsella stercoris DSM 13279]
gi|210158621|gb|EEA89592.1| exodeoxyribonuclease III [Collinsella stercoris DSM 13279]
Length = 280
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 115/248 (46%), Gaps = 50/248 (20%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFS----------------LEKTALKYEPDG 84
Y WS A+ K Y+GTA+ + +P V + LE A+ +G
Sbjct: 60 YHQVWSYAERKGYSGTAVFTRD--EPLSVRHADAVLAAGRAAGLTDDQLELVAVA-ATEG 116
Query: 85 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDL 141
RV EFE F+ ++ Y PN + E R WD + F+L +GKP++ CGD
Sbjct: 117 RVCALEFERFWFVDVYTPNA--QGELARLDTRMAWDDAYRAFLLSLEDETGKPVVTCGDF 174
Query: 142 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 201
NV+H EID+ +P K + G GF+ ER +F +L G D +R
Sbjct: 175 NVAHNEIDLKNP---------------KSNRGNAGFSDEERSKFVELLDAG-YTDTFR-- 216
Query: 202 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 260
D++ +S WS + RIDYF+VS+ + DR+ A ++ +GSD
Sbjct: 217 AANPDLEGAYSWWSYRFNARKNNAGWRIDYFLVSDSIADRVRATGIRSD------IFGSD 270
Query: 261 HCPVSLEL 268
HCPV+LE+
Sbjct: 271 HCPVTLEI 278
>gi|299141239|ref|ZP_07034376.1| exodeoxyribonuclease III [Prevotella oris C735]
gi|298577199|gb|EFI49068.1| exodeoxyribonuclease III [Prevotella oris C735]
Length = 250
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 133/271 (49%), Gaps = 36/271 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A KD ++ + L D +E K+ F Y +W+ AD K Y+GTA+
Sbjct: 11 LRACVGKDFSQSFETLNADFFCLQETKM--QAGQLDLQFPGYTSYWNYADKKGYSGTAIY 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+K +P V++ + +++ +GRVI E++ F+L+ Y PN ++ R W
Sbjct: 69 ARK--EPIAVTYGIGID--EHDHEGRVITLEYDNFFLVTVYTPNA--QDGLRRLDYRMTW 122
Query: 120 DKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ Q ++ + KP+I CGDLNV+H+EID+ +P K + GFT
Sbjct: 123 EDDFQAYLHRLDEQKPVIVCGDLNVAHQEIDLKNP---------------KSNRRNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER++ +L G D +R L+ E+ +S WS + + RIDYF++S+ L
Sbjct: 168 DEEREKMTQLLSHG-FTDTFRTLYPEQ---VTYSWWSYRFRAREKNAGWRIDYFLISDRL 223
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ +++ I E F GSDHCP+ ++L
Sbjct: 224 RP-----QLKDASIHTEIF-GSDHCPIEVDL 248
>gi|449980965|ref|ZP_21817505.1| putative exodeoxyribonuclease III [Streptococcus mutans 5SM3]
gi|450134133|ref|ZP_21870968.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML8]
gi|449149929|gb|EMB53710.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML8]
gi|449176153|gb|EMB78512.1| putative exodeoxyribonuclease III [Streptococcus mutans 5SM3]
Length = 275
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y + W A YAGT L K QP +++ + +GR+I EF+ F
Sbjct: 64 FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-ITYPEIGAPATMDDEGRIITLEFDDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L++G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYIH--GDVPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 273
>gi|307566413|ref|ZP_07628850.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
gi|307344885|gb|EFN90285.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
Length = 249
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 36/234 (15%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y+ +W+ AD K Y+GTA+ K P VS + +++ +GRVI E FYL+
Sbjct: 47 FPGYESYWNYADKKGYSGTAIFTKHT--PLSVSRGI--GIEEHDHEGRVITLEMADFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ +++ R +W+ Q ++ KP+I CGD+NV+HEEID+ +P
Sbjct: 103 TVYTPNS--QDQLKRLPYRMQWETDFQSYLHSLDKHKPVIVCGDMNVAHEEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GF+ ER++ +L G D +RFL+ E+ +SW
Sbjct: 158 ------------KSNHFNAGFSDEEREKMTTLLSNG-FTDTFRFLYPEQ---VTYSWWSY 201
Query: 217 PIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K R K + RIDYF++S+ L++ + ++ + GSDHCPV + L
Sbjct: 202 RF-KAREKNIGWRIDYFLISDRLRESLEEAKIHTEIL------GSDHCPVEIIL 248
>gi|199436395|dbj|BAG70947.1| thermostable exonuclease III [Thermoplasma acidophilum]
Length = 250
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 119/256 (46%), Gaps = 44/256 (17%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL 73
QE K D+ + EE L L + P K Y+GT LV++ +P VS+
Sbjct: 36 QETKADSTSVPEEMYHLGYHLYNNPAKK---------KGYSGTMSLVRE--KPIAVSYGF 84
Query: 74 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SG 132
E +GR++ EF+ FY +N Y PN + + + ++ E+ +
Sbjct: 85 EN------EEGRILNLEFDKFYFINVYFPNA--QHGLTRLDMKLDFGEKFLEYSNELRKK 136
Query: 133 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 192
KPLI CGD NV+HEEID++ P K++ GFT ER L G
Sbjct: 137 KPLIICGDFNVAHEEIDIARP---------------KDNENNAGFTKQERDWMTKFLDSG 181
Query: 193 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 252
+D YR KE +S+ N K G RIDYF+VS++++DR+ E+
Sbjct: 182 -YVDTYRIFMKEGGHYSWWSYRFNARAKNIG--WRIDYFVVSDDIRDRVKKAEI------ 232
Query: 253 LEGFYGSDHCPVSLEL 268
LE GSDH PV+LE+
Sbjct: 233 LETVTGSDHAPVTLEV 248
>gi|325261710|ref|ZP_08128448.1| exodeoxyribonuclease III [Clostridium sp. D5]
gi|324033164|gb|EGB94441.1| exodeoxyribonuclease III [Clostridium sp. D5]
Length = 250
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 120/236 (50%), Gaps = 31/236 (13%)
Query: 36 SPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
S + Y +W+ A K Y+GTA+ K +P V + + +++ +GRVI E+E F
Sbjct: 44 SLELEGYHQYWNYAVKKGYSGTAVFSK--IEPLSVVYGI--GIEEHDQEGRVITLEYEDF 99
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
Y + Y PN + E R KW+ + ++ + KP++ GD+NV+H+EID+ +P
Sbjct: 100 YFVTVYTPNA--QNELARLDYRMKWEDDFRAWLKKLEENKPVVVTGDMNVAHKEIDLKNP 157
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
K + GF+ ER++F +L G ID +R+ + +++ + W
Sbjct: 158 ---------------KTNRKSAGFSDEERQKFTELLDAG-FIDTFRYFYPDQEGIYSW-W 200
Query: 214 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
S + + RIDYF VSE LKDR++ GI L GSDHCPV LE++
Sbjct: 201 SYRFRAREKNAGWRIDYFCVSECLKDRLVDA-----GI-LTDIMGSDHCPVVLEMN 250
>gi|146304199|ref|YP_001191515.1| exodeoxyribonuclease III Xth [Metallosphaera sedula DSM 5348]
gi|145702449|gb|ABP95591.1| exodeoxyribonuclease III Xth [Metallosphaera sedula DSM 5348]
Length = 248
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 109/216 (50%), Gaps = 31/216 (14%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GT L + +P + + +++ +GRVI EF+ Y++N Y PN G EE
Sbjct: 62 YSGTLTLTR--IEPISAKYGIGDE--EFDSEGRVIALEFQKVYVINVYFPNAG--EELKR 115
Query: 113 FQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 172
+ ++++R EFV + GKP + CGD NV+HEEID++ P K++
Sbjct: 116 LDFKLRFNQRFHEFV-KNLGKPCVICGDFNVAHEEIDIARP---------------KDNV 159
Query: 173 GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFI 232
GFT ERK F L G +D +R KE +S+ + K G RIDY +
Sbjct: 160 NHAGFTPEERKWFHEFLASG-FVDTFRIFVKEGGHYSWWSYRFHAREKNIG--WRIDYCV 216
Query: 233 VSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
VS+EL+ + E+ LE GSDH PV+LEL
Sbjct: 217 VSKELEKHVKKAEI------LEKVMGSDHAPVTLEL 246
>gi|24380027|ref|NP_721982.1| exodeoxyribonuclease III [Streptococcus mutans UA159]
gi|290579994|ref|YP_003484386.1| exodeoxyribonuclease III [Streptococcus mutans NN2025]
gi|449865178|ref|ZP_21778839.1| putative exodeoxyribonuclease III [Streptococcus mutans U2B]
gi|449872318|ref|ZP_21781457.1| putative exodeoxyribonuclease III [Streptococcus mutans 8ID3]
gi|449874956|ref|ZP_21781919.1| putative exodeoxyribonuclease III [Streptococcus mutans S1B]
gi|449893395|ref|ZP_21788687.1| putative exodeoxyribonuclease III [Streptococcus mutans SF12]
gi|449947417|ref|ZP_21807362.1| putative exodeoxyribonuclease III [Streptococcus mutans 11SSST2]
gi|449956392|ref|ZP_21809488.1| putative exodeoxyribonuclease III [Streptococcus mutans 4VF1]
gi|449969030|ref|ZP_21812969.1| putative exodeoxyribonuclease III [Streptococcus mutans 2VS1]
gi|449984183|ref|ZP_21818869.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM2]
gi|449999354|ref|ZP_21824494.1| putative exodeoxyribonuclease III [Streptococcus mutans N29]
gi|450005194|ref|ZP_21826552.1| putative exodeoxyribonuclease III [Streptococcus mutans NMT4863]
gi|450031272|ref|ZP_21833605.1| putative exodeoxyribonuclease III [Streptococcus mutans G123]
gi|450035308|ref|ZP_21834949.1| putative exodeoxyribonuclease III [Streptococcus mutans M21]
gi|450056224|ref|ZP_21841931.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML4]
gi|450081460|ref|ZP_21851743.1| putative exodeoxyribonuclease III [Streptococcus mutans N66]
gi|450094138|ref|ZP_21856912.1| putative exodeoxyribonuclease III [Streptococcus mutans W6]
gi|450098379|ref|ZP_21857975.1| putative exodeoxyribonuclease III [Streptococcus mutans SF1]
gi|450138344|ref|ZP_21872113.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML1]
gi|450143104|ref|ZP_21873237.1| putative exodeoxyribonuclease III [Streptococcus mutans 1ID3]
gi|450148336|ref|ZP_21875574.1| putative exodeoxyribonuclease III [Streptococcus mutans 14D]
gi|450166036|ref|ZP_21882130.1| putative exodeoxyribonuclease III [Streptococcus mutans B]
gi|450171670|ref|ZP_21884124.1| putative exodeoxyribonuclease III [Streptococcus mutans SM4]
gi|13182937|gb|AAK14994.1|AF233280_1 nuclease SmnA [Streptococcus mutans]
gi|24378017|gb|AAN59288.1|AE014995_5 putative exodeoxyribonuclease III [Streptococcus mutans UA159]
gi|254996893|dbj|BAH87494.1| putative exodeoxyribonuclease III [Streptococcus mutans NN2025]
gi|449152715|gb|EMB56415.1| putative exodeoxyribonuclease III [Streptococcus mutans 1ID3]
gi|449154571|gb|EMB58144.1| putative exodeoxyribonuclease III [Streptococcus mutans 8ID3]
gi|449168602|gb|EMB71410.1| putative exodeoxyribonuclease III [Streptococcus mutans 11SSST2]
gi|449170674|gb|EMB73370.1| putative exodeoxyribonuclease III [Streptococcus mutans 4VF1]
gi|449174469|gb|EMB76955.1| putative exodeoxyribonuclease III [Streptococcus mutans 2VS1]
gi|449180434|gb|EMB82591.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM2]
gi|449187090|gb|EMB88891.1| putative exodeoxyribonuclease III [Streptococcus mutans N29]
gi|449188836|gb|EMB90526.1| putative exodeoxyribonuclease III [Streptococcus mutans NMT4863]
gi|449191780|gb|EMB93240.1| putative exodeoxyribonuclease III [Streptococcus mutans G123]
gi|449195673|gb|EMB96986.1| putative exodeoxyribonuclease III [Streptococcus mutans M21]
gi|449207002|gb|EMC07686.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML4]
gi|449215265|gb|EMC15472.1| putative exodeoxyribonuclease III [Streptococcus mutans N66]
gi|449216620|gb|EMC16722.1| putative exodeoxyribonuclease III [Streptococcus mutans W6]
gi|449221576|gb|EMC21344.1| putative exodeoxyribonuclease III [Streptococcus mutans SF1]
gi|449234127|gb|EMC33151.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML1]
gi|449236016|gb|EMC34952.1| putative exodeoxyribonuclease III [Streptococcus mutans 14D]
gi|449240040|gb|EMC38735.1| putative exodeoxyribonuclease III [Streptococcus mutans B]
gi|449243722|gb|EMC42131.1| putative exodeoxyribonuclease III [Streptococcus mutans SM4]
gi|449254334|gb|EMC52243.1| putative exodeoxyribonuclease III [Streptococcus mutans S1B]
gi|449255826|gb|EMC53666.1| putative exodeoxyribonuclease III [Streptococcus mutans SF12]
gi|449264441|gb|EMC61783.1| putative exodeoxyribonuclease III [Streptococcus mutans U2B]
Length = 275
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y + W A YAGT L K QP +++ + +GR+I EF+ F
Sbjct: 64 FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-ITYPEIGAPATMDDEGRIITLEFDDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L++G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYIH--GDVPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 273
>gi|344942649|ref|ZP_08781936.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
gi|344259936|gb|EGW20208.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
Length = 254
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 114/233 (48%), Gaps = 39/233 (16%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+++ + A+ K Y+G +L +K +P +V + ++++ +GRVI+AEFE F+LLN Y
Sbjct: 53 YRVYSNCAERKGYSGVTILSRK--EPLQVISDI--GIVEHDREGRVIVAEFENFFLLNVY 108
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC----SGKPLIWCGDLNVSHEEIDVSHPEFF 156
PN+G E R+ WD EF+ C KPLI CGD NV+H+EID++ P+
Sbjct: 109 VPNSG--EALARLDYRQTWDI---EFLAYCRQLQKKKPLIACGDFNVAHQEIDIARPK-- 161
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
PN G+T E F L G L+D +R H + +S WS
Sbjct: 162 ----------PNYNK--SAGYTQVEIDGFSRFLDAG-LVDTFRHFHPDT---VAYSWWSF 205
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDY + S+ L + L GSDHCPV +E+
Sbjct: 206 RGGARARNVGWRIDYVLTSKTLAGNV------KQAFILPEISGSDHCPVGIEI 252
>gi|450049676|ref|ZP_21839797.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM1]
gi|449203427|gb|EMC04286.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM1]
Length = 275
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y + W A YAGT L K QP +++ + +GR+I EF+ F
Sbjct: 64 FPDYDVVWRSSVEPARKGYAGTMFLYKSNLQPT-ITYPEIGAPATMDDEGRIITLEFDDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DALKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L++G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYIH--GDVPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 273
>gi|450159907|ref|ZP_21879708.1| putative exodeoxyribonuclease III [Streptococcus mutans 66-2A]
gi|449240671|gb|EMC39334.1| putative exodeoxyribonuclease III [Streptococcus mutans 66-2A]
Length = 275
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y + W A YAGT L K QP +++ + +GR+I EF+ F
Sbjct: 64 FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-ITYPEIGAPATMDDEGRIITLEFDDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L++G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERDGFTHLLEQG-FTDTFRYIH--GDVPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 273
>gi|281423696|ref|ZP_06254609.1| exodeoxyribonuclease III [Prevotella oris F0302]
gi|281402248|gb|EFB33079.1| exodeoxyribonuclease III [Prevotella oris F0302]
Length = 250
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 132/271 (48%), Gaps = 36/271 (13%)
Query: 1 MPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALL 59
+ A KD ++ + L D +E K+ F Y +W+ AD K Y+GTA+
Sbjct: 11 LRACVGKDFSQSFETLNADFFCLQETKM--QAGQLDLQFPGYTSYWNYADKKGYSGTAIY 68
Query: 60 VKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 119
+K +P V++ + +++ +GRVI E++ F+L+ Y PN ++ R W
Sbjct: 69 ARK--EPIAVTYGIGID--EHDHEGRVITLEYDNFFLVTVYTPNA--QDGLRRLDYRMTW 122
Query: 120 DKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 178
+ Q ++ + KP+I CGDLNV+H+EID+ +P K + GFT
Sbjct: 123 EDDFQAYLHRLDEQKPVIVCGDLNVAHQEIDLKNP---------------KSNRRNAGFT 167
Query: 179 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL 237
ER + +L G D +R L+ E+ +S WS + + RIDYF++S+ L
Sbjct: 168 DEERDKMTQLLSHG-FTDTFRTLYPEQ---VTYSWWSYRFRAREKNAGWRIDYFLISDRL 223
Query: 238 KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ +++ I E F GSDHCP+ ++L
Sbjct: 224 RP-----QLKDASIHTEIF-GSDHCPIEVDL 248
>gi|218281326|ref|ZP_03487814.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
gi|218217511|gb|EEC91049.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
Length = 249
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 33/228 (14%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
YQ S Y+GT + K+ +P + + + +++ +GRVI E+ +Y++ Y
Sbjct: 52 YQYINSAQKKGYSGTMIFCKE--EPLSIRYGMNME--EHDTEGRVITLEYPEYYVVTVYT 107
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
PN+G + R +WDK + L+ KP++ CGD NV++EEID+ +P
Sbjct: 108 PNSG--DGLKRLDYRMEWDKAFSAY-LKSLDKPVMACGDFNVANEEIDIKNP-------- 156
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 220
K + GFT ER F L +D YR L+ EK +S WS +
Sbjct: 157 -------KTNHKNAGFTDEERNSFKENLL-AYFVDTYRSLYPEK---VEYSWWSYRFKAR 205
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDY++VS ELKD+I+ ++ L YGSDHCPV L++
Sbjct: 206 EKNAGWRIDYWLVSPELKDKIVDAKI------LTDIYGSDHCPVQLDI 247
>gi|339446107|ref|YP_004712111.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
gi|338905859|dbj|BAK45710.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
Length = 285
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 130/294 (44%), Gaps = 75/294 (25%)
Query: 15 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 73
E+ D A +E KL +A P Y+ +WS A K Y+GTA+ K+ QP +V L
Sbjct: 25 EIDADIVALQETKLQEGQATLDLP--QYREYWSYAQKKGYSGTAVFCKE--QPLQVLHGL 80
Query: 74 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG- 132
L E GR++ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 81 GSDYLDAE--GRIVALEFPGFWFVDVYTPNA--QNELARIAHRMQWDDAFRDF---CKGL 133
Query: 133 -------------------------------------KPLIWCGDLNVSHEEIDVSHPEF 155
KP++ CGD NV+H+EID+ +P
Sbjct: 134 EEGVLPAGVPVQRPAPGEGHVTISELPLTQPGESTDPKPVVMCGDFNVAHQEIDLKNPG- 192
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 214
PN+ G+ GF+ ER +F +L G +D++R LH D+ +S WS
Sbjct: 193 -----------PNR---GKAGFSDEERGKFTDLLDAG-FVDSFRHLH--PDVTGAYSWWS 235
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +I + + + YGSDHCPV +EL
Sbjct: 236 YRFKARQTNAGWRIDYFLVSEALAPKIESACI------YDEVYGSDHCPVGIEL 283
>gi|376316682|emb|CCG00067.1| exodeoxyribonuclease III [uncultured Flavobacteriia bacterium]
Length = 253
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 116/233 (49%), Gaps = 31/233 (13%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P Y I+ + A K Y+GTA+L K+ K +S S + +++ +GRVI AEF +++
Sbjct: 49 PINGYHIFSNSAVKKGYSGTAILTKE----KPISVSYDINIEEHDTEGRVICAEFSAYFV 104
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN+G + ++ R+ WDK ++ KP+I CGDLNV+H +ID+++P+
Sbjct: 105 VTVYVPNSGSALKRLTY--RQTWDKAFLAYLKALEKKKPVIVCGDLNVAHRDIDLANPK- 161
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
PN G+ E A L G +D +R H + D WS
Sbjct: 162 -----------PNYNK--SAGYMQEEIDGIDAYLSAG-FVDTFR--HFQPDTQKYSWWSY 205
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF++S +L ++ ++ + GSDHCPV+LEL
Sbjct: 206 RAGARVRNVGWRIDYFLISPDLLKKVKKADIYNEVM------GSDHCPVALEL 252
>gi|449881939|ref|ZP_21784704.1| putative exodeoxyribonuclease III [Streptococcus mutans SA38]
gi|449250748|gb|EMC48797.1| putative exodeoxyribonuclease III [Streptococcus mutans SA38]
Length = 275
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y + W A YAGT L K QP +++ + +GR+I EF+ F
Sbjct: 64 FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-ITYPEIGAPATMDDEGRIITLEFDGF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L++G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYIH--GDVPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 273
>gi|387785665|ref|YP_006250761.1| putative exodeoxyribonuclease III [Streptococcus mutans LJ23]
gi|379132066|dbj|BAL68818.1| putative exodeoxyribonuclease III [Streptococcus mutans LJ23]
Length = 297
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y + W A YAGT L K QP +++ + +GR+I EF+ F
Sbjct: 86 FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-ITYPEIGAPATMDDEGRIITLEFDDF 144
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID++HP
Sbjct: 145 FVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDLAHP 202
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L++G D +R++H D+ +SW
Sbjct: 203 S------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYIH--GDVPNVYSW 244
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 245 WAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 295
>gi|257789897|ref|YP_003180503.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|317489355|ref|ZP_07947868.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325832619|ref|ZP_08165417.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
gi|257473794|gb|ACV54114.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|316911526|gb|EFV33122.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325485940|gb|EGC88400.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
Length = 285
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 132/294 (44%), Gaps = 75/294 (25%)
Query: 15 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 73
EL D A +E KL +A P Y+ +WS A+ K Y+GTA+ K+ QP + L
Sbjct: 25 ELDADIVALQETKLQEGQATLDLP--QYREYWSYAEKKGYSGTAIFCKE--QPLQALHGL 80
Query: 74 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG- 132
L E GR++ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 81 GFPHLDTE--GRIVALEFPKFWFVDVYTPNA--QNELARIDHRMEWDDAFRDF---CKGL 133
Query: 133 -------------------------------------KPLIWCGDLNVSHEEIDVSHPEF 155
KP++ CGD NV+H+EID+ +P
Sbjct: 134 EEGVLPAGVPVERPALGEGHVAISELPLTQPGETADPKPVVMCGDFNVAHQEIDLKNPG- 192
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WS 214
PN+ G+ GF+ ER +F +L+ G +D++R LH D+ +S WS
Sbjct: 193 -----------PNR---GKAGFSDEERGKFTDLLEVG-FVDSFRHLH--PDVTGAYSWWS 235
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VS+EL +I + + + YGSDHCPV +EL
Sbjct: 236 YRFKARQTNAGWRIDYFLVSDELAPKIQSACI------YDEVYGSDHCPVGIEL 283
>gi|323490286|ref|ZP_08095501.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
gi|323395956|gb|EGA88787.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
Length = 251
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K+ +P V + L L + +GR+I EF+++Y++ Y
Sbjct: 50 YYTYWNYAHKKGYSGTAIFTKQ--KPVAVQYGLGLEEL--DTEGRIITLEFDSYYVITVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + R W++ I FV KP++ CGDLNV+HEEID+ +P+
Sbjct: 106 TPNS--QHGLLRLDYRLLWEEAILSFVKTLDNHKPVLLCGDLNVAHEEIDLKNPK----- 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
NK++ GFT ER + L+ G +D +R+ + E++ + WS
Sbjct: 159 -------ANKKN---SGFTPEERSKMTQFLESG-FVDTFRYFYPEEEGHYSW-WSYRSNC 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S+ L E+Q I + +GSDHCPV L++
Sbjct: 207 REKNVGWRIDYFLASQRL-----VPELQNAKIH-KDIWGSDHCPVELQI 249
>gi|450046094|ref|ZP_21838754.1| putative exodeoxyribonuclease III [Streptococcus mutans N34]
gi|449199268|gb|EMC00342.1| putative exodeoxyribonuclease III [Streptococcus mutans N34]
Length = 275
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y + W A YAGT L K QP +++ + +GR+I EF+ F
Sbjct: 64 FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-ITYPEIGAPATMDDEGRIITLEFDDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLDDRQIWDEKYVIYLAQLDKQKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L++G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYIH--GDVPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 273
>gi|332522573|ref|ZP_08398825.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
gi|332313837|gb|EGJ26822.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
Length = 275
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 34/237 (14%)
Query: 39 FKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F NY +W S A YAGT L K+ P V+F + +GR+I EF+ F
Sbjct: 64 FPNYLHVWRSSVEPARKGYAGTMFLYKQTLNPV-VTFPEIGAPTTMDSEGRIITLEFDDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R++WD + E++ Q KP++ GD NV+H+EID+++P
Sbjct: 123 FVTQVYTPNAG--DGLRRLADRQEWDIKYAEYLAQLDAQKPVLATGDYNVAHKEIDLANP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F A+L++G D +R LH D+ ++W
Sbjct: 181 A------------SNRR---SPGFTDEERAGFTALLEKG-FTDTFRHLH--GDIPNVYTW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S + D+++ EM G DH P+ LE+
Sbjct: 223 WAQRSKTSKMNNTGWRIDYWLTSNRVADKVLKSEMLDSGAR------QDHTPILLEI 273
>gi|450078845|ref|ZP_21851157.1| putative exodeoxyribonuclease III [Streptococcus mutans N3209]
gi|449209706|gb|EMC10214.1| putative exodeoxyribonuclease III [Streptococcus mutans N3209]
Length = 275
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y + W A YAGT L K QP +++ + +GR+I EF+ F
Sbjct: 64 FPDYDVVWRSSVEPARKGYAGTMFLYKSNLQPT-ITYPKIGAPATMDDEGRIITLEFDDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L++G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYIH--GDVPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 273
>gi|374631714|ref|ZP_09704088.1| exodeoxyribonuclease III [Metallosphaera yellowstonensis MK1]
gi|373525544|gb|EHP70324.1| exodeoxyribonuclease III [Metallosphaera yellowstonensis MK1]
Length = 245
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 104/216 (48%), Gaps = 31/216 (14%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GT L ++ +SF +++ +GRVI EF FY++N Y PN+G E
Sbjct: 60 YSGTMTLSRQA----PLSFRYGIGREEFDSEGRVITLEFPDFYVVNAYFPNSG--EGLRR 113
Query: 113 FQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 172
Q + +D+ QEFV KPL+ CGD NV+HEEID++ PE E+
Sbjct: 114 LQFKLSFDEAFQEFVGSLR-KPLVVCGDFNVAHEEIDIARPE---------------ENE 157
Query: 173 GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFI 232
GFT ER+ F L G +D +R KE WS + R RIDY +
Sbjct: 158 DHAGFTREEREWFHKFLLSG-FVDTFRMFVKEGGHYSW--WSYRTKARERNVGWRIDYCL 214
Query: 233 VSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
VS EL R+ + LE GSDH P++L+L
Sbjct: 215 VSAELAGRVRRANI------LEDMMGSDHAPITLQL 244
>gi|418962582|ref|ZP_13514438.1| putative exodeoxyribonuclease III [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383345371|gb|EID23497.1| putative exodeoxyribonuclease III [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 275
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y+ W A YAGT L K+ PK ++F + +GR+I EFE F
Sbjct: 64 FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-ITFPEIGAPSTMDAEGRIITLEFEKF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + + R+ WDK+ +++ KP++ GD NV+H EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTALDIEKPVLATGDYNVAHNEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFRYIH--GDIPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S + D++ EM G DH P+ LE+
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLTSNRIADKVSKSEMIDSGTR------QDHTPIVLEI 273
>gi|456012224|gb|EMF45930.1| Exodeoxyribonuclease III [Planococcus halocryophilus Or1]
Length = 252
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 117/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K+ +P + + L L + +GR+I EF+ +Y++ Y
Sbjct: 51 YYTYWNYAHKKGYSGTAIFTKQ--KPLSIQYGLGLEEL--DTEGRIITLEFDNYYVITVY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + R W+ I FV KP++ CGDLNV+HEEID+ +P+
Sbjct: 107 TPNS--QHGLLRLDYRLLWEDAILSFVKALDNHKPVLLCGDLNVAHEEIDLRNPK----- 159
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
NK++ GFT+ ER + L++G +D +R H E++ + WS
Sbjct: 160 -------ANKKN---SGFTLEERGKMTQFLEKG-FVDTFRHFHPEEEGHYSW-WSYRSNC 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+ S+ L +Q I ++ +GSDHCPV L++
Sbjct: 208 REKNVGWRIDYFLASQRL-----VPALQSAKIHID-IWGSDHCPVELQV 250
>gi|428184721|gb|EKX53575.1| apurinic/apyrimidinic endonuclease family member in base excision
repair [Guillardia theta CCMP2712]
Length = 447
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 111/219 (50%), Gaps = 37/219 (16%)
Query: 66 PKKVSFSLE-------KTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 118
P KV+F L + A + +GR I EFE+F+++ TY PN+G K + F R +
Sbjct: 250 PLKVTFGLSTLSKDDGEIAAEVIQEGRTITVEFESFFVVATYVPNSGEKLQRLEF-RTKL 308
Query: 119 WDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG 176
WD+++ E++ L+ SGKP+IWCGDLNV+H + D+ + K G P
Sbjct: 309 WDRKVVEYLKKLEASGKPVIWCGDLNVAHLDNDIWNVGAKHLVKSAGTTP---------- 358
Query: 177 FTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSE 235
ER F IL+EG +D +R LH E D FS WS + + +R+DYF+ S+
Sbjct: 359 ---EERDSFSKILEEG-YVDCFRHLHGE-DAKGWFSYWSVRAGNRPWNRGLRLDYFVASK 413
Query: 236 EL--KD---RIIACEMQGHGIELEGFYGSDHCPVSLELS 269
L +D R++ ++ F DH +SL L+
Sbjct: 414 SLCSQDSLPRVVDADIHDE------FVAIDHAAISLTLA 446
>gi|397650247|ref|YP_006490774.1| exodeoxyribonuclease III [Streptococcus mutans GS-5]
gi|449886258|ref|ZP_21786082.1| putative exodeoxyribonuclease III [Streptococcus mutans SA41]
gi|449899435|ref|ZP_21791014.1| putative exodeoxyribonuclease III [Streptococcus mutans R221]
gi|449902334|ref|ZP_21791521.1| putative exodeoxyribonuclease III [Streptococcus mutans M230]
gi|449914622|ref|ZP_21795690.1| putative exodeoxyribonuclease III [Streptococcus mutans 15JP3]
gi|449918470|ref|ZP_21797358.1| putative exodeoxyribonuclease III [Streptococcus mutans 1SM1]
gi|449924021|ref|ZP_21799361.1| putative exodeoxyribonuclease III [Streptococcus mutans 4SM1]
gi|449932133|ref|ZP_21802696.1| putative exodeoxyribonuclease III [Streptococcus mutans 3SN1]
gi|449936390|ref|ZP_21803954.1| putative exodeoxyribonuclease III [Streptococcus mutans 2ST1]
gi|449965327|ref|ZP_21811828.1| putative exodeoxyribonuclease III [Streptococcus mutans 15VF2]
gi|449974218|ref|ZP_21815156.1| putative exodeoxyribonuclease III [Streptococcus mutans 11VS1]
gi|449990606|ref|ZP_21821643.1| putative exodeoxyribonuclease III [Streptococcus mutans NVAB]
gi|449995318|ref|ZP_21822938.1| putative exodeoxyribonuclease III [Streptococcus mutans A9]
gi|450009909|ref|ZP_21828413.1| putative exodeoxyribonuclease III [Streptococcus mutans A19]
gi|450024674|ref|ZP_21831354.1| putative exodeoxyribonuclease III [Streptococcus mutans U138]
gi|450039059|ref|ZP_21836028.1| putative exodeoxyribonuclease III [Streptococcus mutans T4]
gi|450066012|ref|ZP_21845736.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML9]
gi|450074617|ref|ZP_21849401.1| putative exodeoxyribonuclease III [Streptococcus mutans M2A]
gi|450104975|ref|ZP_21859579.1| putative exodeoxyribonuclease III [Streptococcus mutans SF14]
gi|450112046|ref|ZP_21863021.1| putative exodeoxyribonuclease III [Streptococcus mutans SM6]
gi|450114997|ref|ZP_21863656.1| putative exodeoxyribonuclease III [Streptococcus mutans ST1]
gi|450121162|ref|ZP_21866165.1| putative exodeoxyribonuclease III [Streptococcus mutans ST6]
gi|450155950|ref|ZP_21878557.1| putative exodeoxyribonuclease III [Streptococcus mutans 21]
gi|450175808|ref|ZP_21885407.1| putative exodeoxyribonuclease III [Streptococcus mutans SM1]
gi|450181071|ref|ZP_21887604.1| putative exodeoxyribonuclease III [Streptococcus mutans 24]
gi|392603816|gb|AFM81980.1| exodeoxyribonuclease III [Streptococcus mutans GS-5]
gi|449157725|gb|EMB61160.1| putative exodeoxyribonuclease III [Streptococcus mutans 15JP3]
gi|449160314|gb|EMB63587.1| putative exodeoxyribonuclease III [Streptococcus mutans 1SM1]
gi|449161746|gb|EMB64920.1| putative exodeoxyribonuclease III [Streptococcus mutans 3SN1]
gi|449163318|gb|EMB66426.1| putative exodeoxyribonuclease III [Streptococcus mutans 4SM1]
gi|449165605|gb|EMB68595.1| putative exodeoxyribonuclease III [Streptococcus mutans 2ST1]
gi|449171324|gb|EMB73989.1| putative exodeoxyribonuclease III [Streptococcus mutans 15VF2]
gi|449178594|gb|EMB80847.1| putative exodeoxyribonuclease III [Streptococcus mutans 11VS1]
gi|449181544|gb|EMB83625.1| putative exodeoxyribonuclease III [Streptococcus mutans NVAB]
gi|449184613|gb|EMB86546.1| putative exodeoxyribonuclease III [Streptococcus mutans A9]
gi|449190538|gb|EMB92100.1| putative exodeoxyribonuclease III [Streptococcus mutans A19]
gi|449191723|gb|EMB93189.1| putative exodeoxyribonuclease III [Streptococcus mutans U138]
gi|449200715|gb|EMC01736.1| putative exodeoxyribonuclease III [Streptococcus mutans T4]
gi|449208906|gb|EMC09462.1| putative exodeoxyribonuclease III [Streptococcus mutans M2A]
gi|449209331|gb|EMC09860.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML9]
gi|449222800|gb|EMC22515.1| putative exodeoxyribonuclease III [Streptococcus mutans SM6]
gi|449225195|gb|EMC24806.1| putative exodeoxyribonuclease III [Streptococcus mutans SF14]
gi|449228466|gb|EMC27831.1| putative exodeoxyribonuclease III [Streptococcus mutans ST1]
gi|449229432|gb|EMC28746.1| putative exodeoxyribonuclease III [Streptococcus mutans ST6]
gi|449236512|gb|EMC35427.1| putative exodeoxyribonuclease III [Streptococcus mutans 21]
gi|449246186|gb|EMC44498.1| putative exodeoxyribonuclease III [Streptococcus mutans SM1]
gi|449247359|gb|EMC45642.1| putative exodeoxyribonuclease III [Streptococcus mutans 24]
gi|449254437|gb|EMC52345.1| putative exodeoxyribonuclease III [Streptococcus mutans SA41]
gi|449258366|gb|EMC55948.1| putative exodeoxyribonuclease III [Streptococcus mutans R221]
gi|449262860|gb|EMC60299.1| putative exodeoxyribonuclease III [Streptococcus mutans M230]
Length = 275
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y + W A YAGT L K QP +++ + +GR+I EF+ F
Sbjct: 64 FPDYDVVWRSSVEPARKGYAGTMFLYKSNLQPT-ITYPEIGAPATMDDEGRIITLEFDDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L++G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYIH--GDVPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 273
>gi|449910115|ref|ZP_21794552.1| putative exodeoxyribonuclease III [Streptococcus mutans OMZ175]
gi|450087652|ref|ZP_21854395.1| putative exodeoxyribonuclease III [Streptococcus mutans NV1996]
gi|450127489|ref|ZP_21868618.1| putative exodeoxyribonuclease III [Streptococcus mutans U2A]
gi|449217560|gb|EMC17602.1| putative exodeoxyribonuclease III [Streptococcus mutans NV1996]
gi|449230690|gb|EMC29939.1| putative exodeoxyribonuclease III [Streptococcus mutans U2A]
gi|449260262|gb|EMC57766.1| putative exodeoxyribonuclease III [Streptococcus mutans OMZ175]
Length = 275
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y + W A YAGT L K QP +++ + +GR+I EF+ F
Sbjct: 64 FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPI-ITYPEIGAPATMDDEGRIITLEFDDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L++G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYIH--GDVPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 273
>gi|375364493|ref|YP_005132532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421729528|ref|ZP_16168658.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|371570487|emb|CCF07337.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407076498|gb|EKE49481.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 252
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 124/257 (48%), Gaps = 33/257 (12%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE K D +E K+ S + Y +W+ A K Y+GTA+ K+ +P V +
Sbjct: 25 QETKADILCLQETKV--QDGQVSLQLEGYHDYWNYAVKKGYSGTAVFSKE--KPLHVFYG 80
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 131
L ++ +GRVI EFE +++N Y PN K R +W+ +E++ +
Sbjct: 81 LGID--DHDQEGRVITLEFENLFVVNCYTPNA--KRGLERIDYRLQWEADFKEYLQKLDR 136
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP+I CGDLNV+H EID+ +P K + GF+ ER+ F A+L
Sbjct: 137 KKPVILCGDLNVAHREIDLKNP---------------KANRKNAGFSDQEREAFSALLNT 181
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 251
G D++R+L+ +++ + WS + + R+DY IVS+ LK RI +
Sbjct: 182 G-FTDSFRYLYPDREGAYSW-WSYRTNAREKNIGWRLDYVIVSDRLKPRISEAAI----- 234
Query: 252 ELEGFYGSDHCPVSLEL 268
GSDHCPV + +
Sbjct: 235 -CADIMGSDHCPVEMTV 250
>gi|293400493|ref|ZP_06644638.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305519|gb|EFE46763.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 253
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 132/257 (51%), Gaps = 33/257 (12%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE+ D +E K+ + + P Y + + AD K Y+GT + K+ +P V++
Sbjct: 26 QEIDADIFCIQETKMQPGQLDIATP--GYYQYINSADKKGYSGTMVFTKE--KPIAVTYD 81
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 131
L +++ +GRVI E+E FYL+ Y PN+ K+ R +W+ + ++
Sbjct: 82 LGID--EHDHEGRVITCEYENFYLVCVYTPNS--KDGLLRLDYRMQWEDDFRAYLNALKE 137
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
K +I CGDLNV+H+EID+ +P K + GFT ER + + +
Sbjct: 138 KKSVIVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERAKMTTLQQS 182
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 251
G ID++R+L+ E++ + WS + + RIDYF+VSE+ KD+I Q I
Sbjct: 183 G-FIDSFRYLYPEQEGIYSW-WSYRFKAREKNAGWRIDYFLVSEDAKDKI-----QEASI 235
Query: 252 ELEGFYGSDHCPVSLEL 268
+ F GSDHCPVSL++
Sbjct: 236 HTDVF-GSDHCPVSLDI 251
>gi|449944367|ref|ZP_21806724.1| putative exodeoxyribonuclease III [Streptococcus mutans 11A1]
gi|449148594|gb|EMB52451.1| putative exodeoxyribonuclease III [Streptococcus mutans 11A1]
Length = 275
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y + W A YAGT L K QP +++ + +GR+I EF+ F
Sbjct: 64 FPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPT-ITYPEIGAPATMDDEGRIITLEFDDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ ++ Q KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
+ PGFT ER F +L++G D +R++H D+ +SW
Sbjct: 181 S---------------SNRCSPGFTDEERAGFTHLLEQG-FTDTFRYIH--GDVPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY+++S L D+I+ EM G DH P+ L++
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------QDHTPILLKI 273
>gi|315221911|ref|ZP_07863822.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
gi|315188877|gb|EFU22581.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
Length = 275
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 108/237 (45%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y+ W A YAGT L K+ PK ++F + +GR+I EF+ F
Sbjct: 64 FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-ITFPEIGAPSTMDSEGRIITLEFDNF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + + R+ WDK+ +++ KP++ GD NV+H EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLEDRQIWDKKYADYLTALDIEKPVLATGDYNVAHNEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFRYIH--GDIPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S + D++ EM G DH P+ LE+
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR------QDHTPIVLEI 273
>gi|395244503|ref|ZP_10421467.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394483150|emb|CCI82475.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 265
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 32/229 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
YQ W + + GTA+ K +P V+ + + +++ GR I E+ FY + TY
Sbjct: 62 YQYWNYSKEKSFDGTAIFTK--IKPLAVANGIGVS--EFDQQGRTITLEYPNFYFVTTYV 117
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
P +G E+ R WD+ ++++L+ + KP+I GD++V+HE ID++ P
Sbjct: 118 PFSG--EQLQRLDFRIAWDQAFRKYLLKLEANKPVIIGGDMSVAHEPIDLAQP------- 168
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFSWSGNPIG 219
E+ GFT ER F +L G D +R+LH EKD+ WS G
Sbjct: 169 --------SENHHHAGFTEQERDDFTKLLNSG-FTDTFRYLHPNEKDIYS--YWSYRYHG 217
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + + R+DY +VS L +I + L GSDHCPVSLE+
Sbjct: 218 REKNEGWRLDYILVSNSLDSKIKKANI------LTEIPGSDHCPVSLEM 260
>gi|227486633|ref|ZP_03916949.1| exodeoxyribonuclease III [Anaerococcus lactolyticus ATCC 51172]
gi|227235345|gb|EEI85360.1| exodeoxyribonuclease III [Anaerococcus lactolyticus ATCC 51172]
Length = 275
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 49 ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 108
A YAGT L KK + + ++ + +GR+I EF+ FY + Y PN G
Sbjct: 78 ARKSYAGTMTLYKKGLKVEP-TYPQIGAPCTMDFEGRIITLEFDNFYFTHVYTPNAG--- 133
Query: 109 EENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 164
N R R+ WDK +++ KP+I GD NV+HEEID++HPE
Sbjct: 134 --NGLTRLADRQVWDKLYADYLKSLDQNKPVIAAGDFNVAHEEIDLAHPE---------- 181
Query: 165 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYR 222
N E PGFT ER+ F +L +G D +R +H ++ ++W + K
Sbjct: 182 --NNHE---SPGFTDEEREGFTNLLAKG-FTDTFRHIHGR--VEGKYTWWAQRVKTSKIN 233
Query: 223 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
RIDYF+VSE +KD I +M G DH P+ LE++
Sbjct: 234 NSGWRIDYFLVSERIKDLITNSDMIDSGER------QDHTPIVLEIN 274
>gi|170088468|ref|XP_001875457.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650657|gb|EDR14898.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 343
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 27/237 (11%)
Query: 45 WWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPN 103
+WS++ K Y+GTA+L K +P V+ L GR+I EFE FY++ TY N
Sbjct: 117 YWSISSKKSYSGTAILSKH--EPLSVTRVLPGHPDPSHVKGRIITLEFENFYVVGTYVVN 174
Query: 104 NGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDV--SH---PEFFA 157
G + + +++W+ ++ S KP+IW GDLNV+ E+ + +H P
Sbjct: 175 AG--TDLKTLDEKKEWNVHFDAYIRDLDSKKPVIWTGDLNVAPTEMGMYCNHPFGPRLIT 232
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE------GRLIDAYRFLHKEKDMDCGF 211
AA L P K+ G+T AE F IL + +D +R LH E F
Sbjct: 233 AADLAN---PKKKWNKTAGYTEAETTAFRKILASPDDISANKFVDVWRQLHPEDRHYTYF 289
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
S+ N + +G R+D F++SE + +R+ CE++ E + SDHCP+ +E+
Sbjct: 290 SYRFN--CRTKGLGWRLDMFVLSERMMERVKMCEIRS-----EIYGASDHCPLVMEI 339
>gi|309804045|ref|ZP_07698126.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
11V1-d]
gi|309804894|ref|ZP_07698956.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
09V1-c]
gi|309807812|ref|ZP_07701744.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
01V1-a]
gi|309809734|ref|ZP_07703588.1| putative exodeoxyribonuclease III [Lactobacillus iners SPIN
2503V10-D]
gi|308163813|gb|EFO66079.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
11V1-d]
gi|308165833|gb|EFO68054.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
09V1-c]
gi|308168914|gb|EFO71000.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
01V1-a]
gi|308169913|gb|EFO71952.1| putative exodeoxyribonuclease III [Lactobacillus iners SPIN
2503V10-D]
Length = 168
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 29/191 (15%)
Query: 81 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 139
+ +GR+I EF+TFYL Y PN+G E R WD + QE++ + KP+I G
Sbjct: 2 DQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKLDQNKPVIASG 59
Query: 140 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 199
D NV+H+EID+ HPE + GFT ERK F +L G ID +R
Sbjct: 60 DYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFR 103
Query: 200 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 257
+++ D+ +SW I K RIDY++VS+ L D+I +M G
Sbjct: 104 YIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR----- 156
Query: 258 GSDHCPVSLEL 268
DHCP+ L++
Sbjct: 157 -KDHCPILLKI 166
>gi|90962461|ref|YP_536377.1| exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|301299216|ref|ZP_07205503.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821655|gb|ABE00294.1| Exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|300853176|gb|EFK80773.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 275
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 34/238 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y+I W A YAGT L K P +S+ + +GR+I EF++F
Sbjct: 64 FPDYEIAWRSSQEPARKGYAGTMFLYKNNLNPT-ISYPEIDAPEPMDSEGRIITLEFDSF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
Y+ Y PN G + R+ WD++ ++++ KPL+ GD NV+H+EID++HP
Sbjct: 123 YVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVSLDQNKPLLSSGDFNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
+ GFT ER F +L +G D +R++H D+ +SW
Sbjct: 181 ---------------GNNHHSAGFTDEERAGFTNLLNKG-FTDTFRYVH--GDVKDVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ K RIDY++ S + D+I+ EM L+ DH P+ LE++
Sbjct: 223 WAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM------LDSGERRDHTPIVLEIN 274
>gi|227891490|ref|ZP_04009295.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|227866637|gb|EEJ74058.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
Length = 275
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 34/238 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y+I W A YAGT L K P VS+ + +GR+I EF+ F
Sbjct: 64 FPDYEITWRSSQEPARKGYAGTMFLYKNNLNPT-VSYPEIDAPEPMDSEGRIITLEFDNF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
Y+ Y PN G + R+ WD++ ++++ KPL+ GD NV+H+EID++HP
Sbjct: 123 YVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVSLDQNKPLLSSGDFNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
+ GFT ER F +L +G D +R++H D+ +SW
Sbjct: 181 ---------------GNNHHSAGFTDEERAGFTNLLNKG-FTDTFRYVH--GDVKDVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ K RIDY++ S + D+I+ EM L+ DH P+ LE++
Sbjct: 223 WAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM------LDSGERRDHTPIVLEIN 274
>gi|408411522|ref|ZP_11182670.1| Exodeoxyribonuclease III [Lactobacillus sp. 66c]
gi|409350015|ref|ZP_11233286.1| Exodeoxyribonuclease III [Lactobacillus equicursoris CIP 110162]
gi|407874302|emb|CCK84476.1| Exodeoxyribonuclease III [Lactobacillus sp. 66c]
gi|407877730|emb|CCK85344.1| Exodeoxyribonuclease III [Lactobacillus equicursoris CIP 110162]
Length = 275
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 30/220 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L KK +P V++ + +GR+I EF FY+ Y PN+G
Sbjct: 82 YAGTMYLYKKDLEPT-VTYPEIGAPEPMDAEGRMITLEFPDFYVTEVYTPNSG--TGLKR 138
Query: 113 FQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R++WD+ + ++ + KP++ GD N +++EID+ HPE +
Sbjct: 139 LDERQEWDQCYRTYLEKLDAQKPVLASGDFNAAYQEIDLKHPE---------------NN 183
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRID 229
GFT ER FG +L G +D +R LH + ++ +SW + K RID
Sbjct: 184 HHSAGFTDEERAGFGQLLGSG-FVDTFRLLHGQ--VEGVYSWWAQRVRSAKANNSGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
Y++VSE L D++ EM G +DHCP+ LE+S
Sbjct: 241 YWLVSERLADKVTKSEMIDTGER------ADHCPILLEVS 274
>gi|349603618|gb|AEP99410.1| DNA-(apurinic or apyrimidinic site) lyase-like protein, partial
[Equus caballus]
Length = 171
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 79 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL-QCSGKPLIW 137
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 3 EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 60
Query: 138 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 197
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 61 CGDLNVAHEEIDLRNPK------------GNKKN---AGFTPQERQGFGELLQAVPLADS 105
Query: 198 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 257
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 106 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 158
Query: 258 GSDHCPVSLELS 269
GSDHCP++L L+
Sbjct: 159 GSDHCPITLYLA 170
>gi|335031457|ref|ZP_08524893.1| exodeoxyribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
gi|333769561|gb|EGL46670.1| exodeoxyribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
Length = 275
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 107/237 (45%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y+ W A YAGT L K+ PK ++F + +GR+I EFE F
Sbjct: 64 FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-ITFPEIGAPSTMDAEGRIITLEFEKF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + + R+ WDK+ +++ KP++ GD NV+H EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTALDIEKPVLATGDYNVAHNEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L G D +R++H D +SW
Sbjct: 181 S------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFRYIH--GDNPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S + D++ EM G DH P+ LE+
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR------QDHTPIVLEI 273
>gi|373452187|ref|ZP_09544104.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
gi|371967081|gb|EHO84557.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
Length = 251
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y + + AD K Y+GT + K+ +P V++ L +++ +GRVI E+E FYL+ Y
Sbjct: 50 YYQYMNSADKKGYSGTMVFTKE--KPIAVTYDLGID--EHDHEGRVITCEYENFYLVCVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K+ R +W+ + ++ K +I CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--KDGLLRLDYRMQWEDDFRAYLNALKEKKSVIVCGDLNVAHKEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER + + + G ID++R+L+ E++ + WS
Sbjct: 158 ---------KTNRRNAGFTDEERAKMTTLQQSG-FIDSFRYLYPEQEGIYSW-WSYRFKA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYF+VSE+ KD+I Q I + F GSDHCPVSL++
Sbjct: 207 REKNAGWRIDYFLVSEDAKDKI-----QEASIHTDVF-GSDHCPVSLDI 249
>gi|116494506|ref|YP_806240.1| exonuclease III [Lactobacillus casei ATCC 334]
gi|191637944|ref|YP_001987110.1| exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227535523|ref|ZP_03965572.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|385819687|ref|YP_005856074.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|385822845|ref|YP_005859187.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|417983078|ref|ZP_12623720.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|417989182|ref|ZP_12629696.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|417992549|ref|ZP_12632904.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|417995780|ref|ZP_12636067.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|417998717|ref|ZP_12638932.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|418004708|ref|ZP_12644721.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|418013374|ref|ZP_12653018.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
gi|116104656|gb|ABJ69798.1| Exonuclease III [Lactobacillus casei ATCC 334]
gi|190712246|emb|CAQ66252.1| Exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227186845|gb|EEI66912.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|327382014|gb|AEA53490.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|327385172|gb|AEA56646.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|410528859|gb|EKQ03697.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|410533128|gb|EKQ07815.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|410536484|gb|EKQ11077.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|410539278|gb|EKQ13814.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|410540321|gb|EKQ14836.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|410548944|gb|EKQ23126.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|410555900|gb|EKQ29831.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
Length = 252
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 34/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+G E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 106 TPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------- 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
+K + GFT ER F L G ID +R L+ + +S WS
Sbjct: 157 --------DKTNHHNAGFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFH 204
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+ S + K I ++ L GSDHCPV L
Sbjct: 205 ARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDIMGSDHCPVEL 246
>gi|418001612|ref|ZP_12641751.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
gi|410546206|gb|EKQ20470.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
Length = 252
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 34/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+G E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 106 TPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------- 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
+K + GFT ER F L +G ID +R L+ + +S WS
Sbjct: 157 --------DKTNHHNAGFTDEERADFTKQL-DGGFIDTFRNLYPDT---VTYSWWSYRFH 204
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+ S + K I ++ L GSDHCPV L
Sbjct: 205 ARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDIMGSDHCPVEL 246
>gi|301066021|ref|YP_003788044.1| exonuclease III [Lactobacillus casei str. Zhang]
gi|417980207|ref|ZP_12620888.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
gi|300438428|gb|ADK18194.1| Exonuclease III [Lactobacillus casei str. Zhang]
gi|410525434|gb|EKQ00336.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
Length = 252
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 34/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+G E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 106 TPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------- 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
+K + GFT ER F L G ID +R L+ + +S WS
Sbjct: 157 --------DKTNHHNAGFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFH 204
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+ S + K I ++ L GSDHCPV L
Sbjct: 205 ARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDIMGSDHCPVEL 246
>gi|350645454|emb|CCD59806.1| ap endonuclease, putative [Schistosoma mansoni]
Length = 281
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 97/184 (52%), Gaps = 22/184 (11%)
Query: 24 REEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALKYEP 82
+E K L + S +YQ +WS AD + YAGTAL K P KV++ + K ++
Sbjct: 98 QETKCPLHKIPSEAKVPSYQSFWSSADKAGYAGTALFSK--ISPIKVTYGIGKKM--HDD 153
Query: 83 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 141
+GRVI AE++ FYL+ Y PN+G + R ++WD E++ + S KP+I CGDL
Sbjct: 154 EGRVITAEYDKFYLVTAYVPNSGQGLIRLPY-REKEWDPDFLEYLRKLDSTKPVIVCGDL 212
Query: 142 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 201
NV+HEEID++ PE + GFT ER F +L LID YR
Sbjct: 213 NVAHEEIDLARPE---------------TNHKTAGFTDQERSGFTKLLSSANLIDTYRHF 257
Query: 202 HKEK 205
+ ++
Sbjct: 258 YPDR 261
>gi|303232423|ref|ZP_07319115.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302481507|gb|EFL44575.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 259
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 119/259 (45%), Gaps = 35/259 (13%)
Query: 14 QELKDDTKASREEKLILMR-ALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSF 71
Q L D +E KL + AL P Y WS A+ K Y+GTA+ K+ P +
Sbjct: 32 QSLNVDIIGIQETKLQEGQIALDLP---GYTQTWSYAERKGYSGTAVFSKEA--PLQTIH 86
Query: 72 SLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 131
++ +A E GRV EF F+ +N Y PN+ K E R +WD+ + F+
Sbjct: 87 TIGCSAADNE--GRVCALEFNDFWFVNVYTPNS--KNELARLDERMEWDEAYRSFLHTLD 142
Query: 132 GK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 190
K P+I CGD N +HEEID+ +P N ++ GF+ ER F +L
Sbjct: 143 AKKPVITCGDFNCAHEEIDLKNP------------ATNHQN---AGFSDEERASFTKLLN 187
Query: 191 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 250
G D +R H D WS + R RIDYF+VS+ +K+++ +
Sbjct: 188 TG-FTDTFRAAHPTL-TDAYSWWSYRMRSRERNAGWRIDYFLVSDRIKNQVSDARIHA-- 243
Query: 251 IELEGFYGSDHCPVSLELS 269
YGSDHCPV L ++
Sbjct: 244 ----DVYGSDHCPVGLTIT 258
>gi|291545257|emb|CBL18366.1| exodeoxyribonuclease III [Ruminococcus champanellensis 18P13]
Length = 256
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 109/228 (47%), Gaps = 33/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W AD K Y+GTA+ K + F L + +GRV+ E+ FYL+N Y
Sbjct: 50 YNQYWHYADKKGYSGTAVFTKHIPLSVQRDFGLPA----HNGEGRVLTLEYPDFYLVNAY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ K E R +W+ +++++L KP+I+CGDLNV+H EID+ +P
Sbjct: 106 VPNS--KRELLRLDYRMEWEDALRQYLLGLDARKPVIYCGDLNVAHREIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER R +L G D +R L+ D ++ WS
Sbjct: 158 ---------KSNRRNAGFTDEERGRLSTLLDSG-FTDTFRLLY--PDTAGAYTWWSYMFH 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ + RIDYFIVS IA +Q I + GSDHCPV L
Sbjct: 206 AREKNAGWRIDYFIVSNR-----IAPLVQDSLI-YKDVLGSDHCPVGL 247
>gi|418010415|ref|ZP_12650192.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
gi|410553904|gb|EKQ27892.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
Length = 252
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 34/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+G E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 106 TPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------- 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
+K + GFT ER F L G ID +R L+ + +S WS
Sbjct: 157 --------DKTNHHNAGFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFH 204
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+ S + K I ++ L GSDHCPV L
Sbjct: 205 ARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDIMGSDHCPVEL 246
>gi|427393372|ref|ZP_18887150.1| exodeoxyribonuclease III (xth) [Alloiococcus otitis ATCC 51267]
gi|425730590|gb|EKU93424.1| exodeoxyribonuclease III (xth) [Alloiococcus otitis ATCC 51267]
Length = 275
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 30/220 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAG + KK P+ V++ + +GR+I EF+ FY Y PN G +
Sbjct: 82 YAGNMVFYKKDLSPE-VTYPRIDAPEPMDSEGRMITLEFDNFYFTQVYTPNAG--SQLAR 138
Query: 113 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R++WDK+ ++ + KP+I GD NV+H+EID++HPE +
Sbjct: 139 LGERQEWDKQYANYLTSLDAAKPVIAAGDFNVAHQEIDLAHPE---------------NN 183
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRID 229
GFT ER+ F +L G D++R H D++ +SW + K RID
Sbjct: 184 HHSAGFTDEEREGFSHLLSRG-FTDSFR--HVNGDVEGVYSWWAQRVKTSKENNSGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
YF+ S+ L D++ EM G DH P+ LE++
Sbjct: 241 YFLTSDRLSDQVEKSEMVDSGPR------QDHTPIYLEIN 274
>gi|260881707|ref|ZP_05405068.2| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
gi|260848221|gb|EEX68228.1| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
Length = 253
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 124/256 (48%), Gaps = 33/256 (12%)
Query: 15 ELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 73
+L D A +E K+ +A+ P Y+ +W+ A+ K Y+GTA+ + +P V++ L
Sbjct: 27 KLDADVFALQETKMQPEQAILDLP--GYRQYWNSAERKGYSGTAVFSR--IEPLAVTYGL 82
Query: 74 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK 133
+++ +GRVI EF Y + Y PN+ K R +W+ + +++ K
Sbjct: 83 GIE--EHDHEGRVITLEFPDCYFVTVYTPNS--KRGLERLAYRMEWEDAFRAYLVALDAK 138
Query: 134 -PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 192
P+I CGDLNV+H EID+ +P K + GFT ER +F +L G
Sbjct: 139 KPVIVCGDLNVAHTEIDLKNP---------------KTNHHNAGFTDEERGKFTELLDAG 183
Query: 193 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 252
ID +R L+ ++ + WS + RIDYF+ S L+++I +
Sbjct: 184 -FIDTFRALYPDRTGIYTW-WSYLRKARDTNAGWRIDYFVTSARLREKIADATIHNE--- 238
Query: 253 LEGFYGSDHCPVSLEL 268
+GSDHCPV LEL
Sbjct: 239 ---VFGSDHCPVGLEL 251
>gi|409996804|ref|YP_006751205.1| exodeoxyribonuclease [Lactobacillus casei W56]
gi|406357816|emb|CCK22086.1| Exodeoxyribonuclease [Lactobacillus casei W56]
Length = 290
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 34/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y
Sbjct: 88 YHQYFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVY 143
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+G E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 144 TPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------- 194
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
+K + GFT ER F L G ID +R L+ + +S WS
Sbjct: 195 --------DKTNHHNAGFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFH 242
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+ S + K I ++ L GSDHCPV L
Sbjct: 243 ARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDIMGSDHCPVEL 284
>gi|389816348|ref|ZP_10207511.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
gi|388465341|gb|EIM07660.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
Length = 251
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 35/232 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K+ +P + + L +++ +GR+I EF+ Y++ Y
Sbjct: 50 YYTYWNYAHKKGYSGTAIFTKE--EPLSIQYGLGSE--EHDTEGRMIALEFDGHYVVTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + R W++ I FV KP+I CGDLNV+HEEID+ +P+
Sbjct: 106 TPNS--QHGLLRLDYRLLWEEAILSFVKTLDNQKPVILCGDLNVAHEEIDLKNPK----- 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS--WSGNP 217
NK++ GFT ER + L +G +D +R H + GF WS
Sbjct: 159 -------ANKKN---SGFTPDERGKMTQFLTDG-FVDTFRHFHP---TETGFYSWWSYRS 204
Query: 218 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + RIDYFI S++L R+ + ++ +GSDHCPV L+++
Sbjct: 205 NCREKNVGWRIDYFIASQKLLPRLKSAKIHA------DVWGSDHCPVELQIA 250
>gi|429507371|ref|YP_007188555.1| ExoA protein [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488961|gb|AFZ92885.1| ExoA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 252
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 124/258 (48%), Gaps = 35/258 (13%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE + D +E K+ S + Y +W+ A K Y+GTA+ K+ +P V +
Sbjct: 25 QETEADILCLQETKV--QDGQVSLQLEGYHAYWNYAVKKGYSGTAVFSKE--KPLHVFYG 80
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 131
L ++ +GRVI EFE +++N Y PN K R +W+ ++++ +
Sbjct: 81 LGID--DHDQEGRVITLEFEHVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDR 136
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP+I CGDLNV+H EID+ +P K + GF+ ER+ F A+L
Sbjct: 137 KKPVILCGDLNVAHREIDLKNP---------------KANRKNAGFSEQEREAFSALLNA 181
Query: 192 GRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 250
G D++R+L+ D + +S WS + + R+DY IVS+ LK RI +
Sbjct: 182 G-FTDSFRYLY--PDQEGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKQRISQAAI---- 234
Query: 251 IELEGFYGSDHCPVSLEL 268
GSDHCPV + L
Sbjct: 235 --CADIMGSDHCPVEMTL 250
>gi|328702292|ref|XP_001952290.2| PREDICTED: recombination repair protein 1-like [Acyrthosiphon
pisum]
Length = 317
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 30/225 (13%)
Query: 42 YQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+I+ + D + Y+G AL K +P V E L + +GRVI AE+E F+L++TY
Sbjct: 115 YKIYINSGDKAGYSGVALYSKT--KPISVRMGKEIKDLD-DNEGRVIEAEYEQFFLVSTY 171
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN G + + +R KWD+ ++++ + + KP++ GDLNV+HEEID+++P
Sbjct: 172 IPNAGAGLK--TLPKRMKWDEAFRKYLKELDTKKPVVLTGDLNVAHEEIDIANP------ 223
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER +L++G +D +R L+ EK F W+
Sbjct: 224 ---------KTNTKSAGFTKEERDNMSLLLEQG-FVDTFRTLNPEKTGAYTF-WTYFHNS 272
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 264
+ + R+DYFI S+ D + ++ + GSDHCP+
Sbjct: 273 RAKNVGWRLDYFITSKRFMDNVCDSTIRNEVL------GSDHCPI 311
>gi|354806768|ref|ZP_09040248.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
gi|354514743|gb|EHE86710.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
Length = 254
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 31/231 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ K +P ++ + + +++ +GRVI E+ TFYL+ Y
Sbjct: 50 YHQYFNYAEKKGYSGTAIFTKH--KPLTATYGIGQP--EHDQEGRVITLEYPTFYLITCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ +++ R +W+ Q ++ S KP+I+CGDLNV+HE ID+ +
Sbjct: 106 TPNS--QDKLKRLDYRMRWENAFQTYIADLSTQKPVIFCGDLNVAHEPIDLKN------- 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+K + GF+ ER + +L G D +R+ + ++ D WS
Sbjct: 157 --------DKTNHHNAGFSDEERGQMTTLLNRG-FTDTFRYFYPDQP-DIYSWWSYRFHA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ RIDYFI S +L+ +++ ++ +GSDHCPV L+ +
Sbjct: 207 RDNNAGWRIDYFITSNDLQPKLVDAKIHTE------IFGSDHCPVELDTQD 251
>gi|346314587|ref|ZP_08856106.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|373124043|ref|ZP_09537885.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|422327142|ref|ZP_16408169.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
gi|345906322|gb|EGX76051.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|371659875|gb|EHO25135.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|371663836|gb|EHO29020.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
Length = 254
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
YQ S Y+GT + K+ +P V++ L +++ +GRVI E+E FYL+ Y
Sbjct: 51 YQYMNSAEKKGYSGTMVFSKQ--KPLSVTYGL--GIEEHDHEGRVITCEYEDFYLVCVYT 106
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ K+ R W+ + ++ + + K ++ CGDLNV+H+EID+ +P
Sbjct: 107 PNS--KDGLLRLDYRMVWEDAFRAYLHKLNETKSVLVCGDLNVAHKEIDLKNP------- 157
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GFT ER + +L+ G ID++R+L+ E++ + WS +
Sbjct: 158 --------KTNRRNAGFTDEERGKMSVLLESG-FIDSFRYLYPEQEGIYSW-WSYRFKAR 207
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE+ K+ I + YGSDHCPVSLE
Sbjct: 208 EKNAGWRIDYFLVSEDAKEAIREARIH------TDIYGSDHCPVSLEF 249
>gi|257066091|ref|YP_003152347.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
gi|256797971|gb|ACV28626.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
Length = 274
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 104/223 (46%), Gaps = 30/223 (13%)
Query: 49 ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 108
A YAGT L KK K+ SF + +GR++ EFE FY Y PN G
Sbjct: 78 ARKSYAGTMTLYKKGLDVKE-SFPEIGAPDTMDLEGRILTLEFEDFYFTQVYTPNAG--G 134
Query: 109 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPP 167
E R +WDK +++ + KP+I GD NV+HEEID++HPE N ++
Sbjct: 135 ELKRLPLREEWDKLYADYLAELDKNKPVIATGDFNVAHEEIDLAHPE-------NNHM-- 185
Query: 168 NKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKR 225
GFT ER+ F +L G D +R H K+++ ++W + K
Sbjct: 186 ------SAGFTDEERRGFTNLLNRG-FTDTFR--HLNKNLEGAYTWWAQRVKTSKINNSG 236
Query: 226 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RIDYF+VS+ L + +I + G DH P+ LE+
Sbjct: 237 WRIDYFLVSDRLMEDVIDSTIIDSGDR------QDHTPIMLEI 273
>gi|418965268|ref|ZP_13517046.1| putative exodeoxyribonuclease III [Streptococcus constellatus
subsp. constellatus SK53]
gi|383342863|gb|EID21064.1| putative exodeoxyribonuclease III [Streptococcus constellatus
subsp. constellatus SK53]
Length = 275
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y+ W A YAGT L K+ PK ++F + +GR+I EF+ F
Sbjct: 64 FPHYETTWRSSIEPARKGYAGTMFLYKENLSPK-ITFPEIGAPSTMDSEGRIITLEFDNF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WDK+ +++ KP++ GD NV+H EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLVERQVWDKKYADYLTALDIEKPVLATGDYNVAHNEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFRYIH--GDIPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S + D++ EM G DH P+ LE+
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR------QDHTPIVLEI 273
>gi|357050363|ref|ZP_09111563.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
gi|355381448|gb|EHG28572.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
Length = 250
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ +E+ ++ +GRVI E+ F+L+ Y
Sbjct: 50 YTQYWNYAEKKGYSGTAIFAKEPALAAHYGIGIEE----HDAEGRVITLEYPEFFLVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN + E R W+ + ++ KP+I CGDLNV+H+ ID+ +
Sbjct: 106 TPNA--QNELRRLDYRMTWEDAFRAYLTDLKQQKPVILCGDLNVAHQNIDLKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + + + + WS
Sbjct: 158 ---------KTNQKNAGFTPEEREKFSTLLSAG-FTDTFRYFYPDAEGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF+VS++L DR++ ++ + GSDHCPV L+L+
Sbjct: 207 RKNNAGWRIDYFVVSDDLNDRLVDAKIHTEIL------GSDHCPVELQLN 250
>gi|238853021|ref|ZP_04643416.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238834359|gb|EEQ26601.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 275
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 30/220 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L K P+ V+ + + +GR++ EF+ +Y+ Y PN+G E
Sbjct: 82 YAGTMFLYKNTLAPE-VTKPVIAAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKR 138
Query: 113 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R+ WD++ E++ + KP+I GD NV+H ID+ HPE +
Sbjct: 139 LDDRQVWDEKYTEYLQKLDQNKPVIASGDYNVAHTPIDLKHPE---------------SN 183
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRID 229
GFT ER+ F +LK G D +R +H +++ +SW + K RID
Sbjct: 184 HHNAGFTDEERQDFDKLLKLG-FTDTFRKVH--GNVEGVYSWWAQRVRTSKANNSGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
Y+IVS + D++ EM G DHCP+ LE++
Sbjct: 241 YYIVSNRIADQVTKSEMLDTGER------KDHCPIMLEIN 274
>gi|257870107|ref|ZP_05649760.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
gi|257804271|gb|EEV33093.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
Length = 261
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 33/231 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ +E+ ++ +GRVI E+ F+L+ Y
Sbjct: 61 YTQYWNYAEKKGYSGTAIFAKEPALAAHYGIGIEE----HDAEGRVITLEYPEFFLVTCY 116
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN + E R W+ + ++ KP+I CGDLNV+H+ ID+ +
Sbjct: 117 TPNA--QNELRRLDYRMTWEDAFRAYLTDLKQQKPVILCGDLNVAHQNIDLKNW------ 168
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GFT ER++F +L G D +R+ + D + +S WS
Sbjct: 169 ---------KTNQKNAGFTPEEREKFSTLLSAG-FTDTFRYFY--PDAEGIYSWWSYRFN 216
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF+VS++L DR++ ++ + GSDHCPV L+L+
Sbjct: 217 ARKNNAGWRIDYFVVSDDLNDRLVDAKIHTEIL------GSDHCPVELQLN 261
>gi|385840954|ref|YP_005864278.1| Exodeoxyribonuclease III [Lactobacillus salivarius CECT 5713]
gi|417787595|ref|ZP_12435278.1| exodeoxyribonuclease III [Lactobacillus salivarius NIAS840]
gi|417809656|ref|ZP_12456337.1| Exodeoxyribonuclease III [Lactobacillus salivarius GJ-24]
gi|418960898|ref|ZP_13512785.1| exodeoxyribonuclease III [Lactobacillus salivarius SMXD51]
gi|300215075|gb|ADJ79491.1| Exodeoxyribonuclease III [Lactobacillus salivarius CECT 5713]
gi|334307772|gb|EGL98758.1| exodeoxyribonuclease III [Lactobacillus salivarius NIAS840]
gi|335350580|gb|EGM52076.1| Exodeoxyribonuclease III [Lactobacillus salivarius GJ-24]
gi|380344565|gb|EIA32911.1| exodeoxyribonuclease III [Lactobacillus salivarius SMXD51]
Length = 275
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 34/238 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y+I W A YAGT L K P +S+ + +GR+I EF+ F
Sbjct: 64 FPDYEIAWRSSQEPARKGYAGTMFLYKNNLNPT-ISYPEIDAPEPMDSEGRIITLEFDNF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
Y+ Y PN G + R+ WD++ ++++ KPL+ GD NV+H+EID++HP
Sbjct: 123 YVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVSLDQNKPLLSSGDFNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
+ GFT ER F +L +G D +R++H D+ +SW
Sbjct: 181 ---------------GNNHHSAGFTDEERAGFTNLLNKG-FTDTFRYVH--GDVKDVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ K RIDY++ S + D+I+ EM L+ DH P+ LE++
Sbjct: 223 WAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM------LDSGERRDHTPIVLEIN 274
>gi|366090151|ref|ZP_09456517.1| exodeoxyribonuclease [Lactobacillus acidipiscis KCTC 13900]
Length = 275
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 110/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y + W A YAGT + KK P V++ + +GR+ EFE
Sbjct: 64 FPDYALAWRSSEEPARKSYAGTMFIYKKSLDPT-VTYPQIGAPATMDQEGRITTLEFEKC 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN+G K + R+ WD++ E++ KP+I GD N +HEEID++HP
Sbjct: 123 FVTQVYTPNSGNKLDR--LSDRQVWDQKYIEYLQTLDQQKPVISSGDFNCAHEEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
+ + GFT ER F +L+ G D++R +H ++ +SW
Sbjct: 181 D---------------RNHRSAGFTDEERIDFTKLLESG-FNDSFRTVH--GNVTGAYSW 222
Query: 214 SGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++VS+ +KD+II EM G DH P+ LE+
Sbjct: 223 WAQRVKTSKTNNSGWRIDYYLVSDRIKDKIIKSEMIDSGTR------QDHTPIYLEI 273
>gi|440302801|gb|ELP95108.1| exodeoxyribonuclease III, putative [Entamoeba invadens IP1]
Length = 373
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 120/236 (50%), Gaps = 35/236 (14%)
Query: 37 PPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
P Y ++S + +K YAGTA+L K+ +P V+ L+ K GR+I AE+E F
Sbjct: 167 PTVSGYNSYFSASTAKKGYAGTAILTKE--KPITVTMKLDG---KLNEHGRIITAEYEKF 221
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
YL+NTY N+G K EN +R WD +++ ++ S K +IWCGDLNV+ IDV+ P
Sbjct: 222 YLVNTYVMNSGVK-LENLKKRVDTWDVSMKKHLIDLSKKKKVIWCGDLNVALRWIDVAKP 280
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFS 212
A +L GFT ER+ +L+E L+D+++ H KEK+ FS
Sbjct: 281 ----ATRLRC-----------AGFTKEERESASQLLEEVGLVDSFQVKHPKEKNFYTFFS 325
Query: 213 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K + R+DYF VS+EL D I + SDH P+ + +
Sbjct: 326 FR----DKAKVSGWRLDYFDVSKELVDDITQIYRRKE------VNISDHVPLVIHI 371
>gi|421882518|ref|ZP_16313789.1| Exodeoxyribonuclease III [Helicobacter bizzozeronii CCUG 35545]
gi|375315363|emb|CCF81785.1| Exodeoxyribonuclease III [Helicobacter bizzozeronii CCUG 35545]
Length = 250
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F++Y +W+ A K Y+G L K P ++ + +++ +GRV+ E+ FYL+
Sbjct: 47 FEDYASFWNSAQKKGYSGVLTLSKNA--PINTTYGI--GVAQHDLEGRVVTCEYANFYLV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + R KW++ ++F+ G K ++ CGDLNV+H+EID+ +PE
Sbjct: 103 NVYVPNS--QRGLLRLDYRLKWEEAFRQFLADLMGHKAVVVCGDLNVAHKEIDLKNPE-- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
+ GF+ ER F +L G LID YR + + + WS
Sbjct: 159 -------------SNHHNAGFSPEERHAFSQLLDLG-LIDTYRHFYPNQQGIYTW-WSYM 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VS L++++ + H + GSDHCPV L++
Sbjct: 204 NEARARNIGWRIDYFLVSHTLQEQLKDALIHPHIL------GSDHCPVGLKI 249
>gi|441499473|ref|ZP_20981659.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
gi|441437006|gb|ELR70364.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
Length = 258
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 127/252 (50%), Gaps = 35/252 (13%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTAL 78
+TK E+ ++ L P +K Y + S Y+GTA+L KK +P +++ L
Sbjct: 38 ETKGQVEDIKTALQLL--PDYKAY-VNCSKLKKGYSGTAILSKK--EPLDITYDLGHE-- 90
Query: 79 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 137
+++ +GRVI AEF+ F+L+N Y PN+G + N + R+ WD + KP++
Sbjct: 91 EHDQEGRVITAEFDHFFLVNVYTPNSG--QGLNRLEYRQAWDVIFLNHLRSLEQRKPVVL 148
Query: 138 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 197
CGDLNV+HEEID+ A AK N NK G+T E F + L+ G +D
Sbjct: 149 CGDLNVAHEEIDI------ARAKQN----YNKS----AGYTQQEIDGFKSYLEHG-FVDT 193
Query: 198 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 256
+R E + ++ W+ + R RIDYF+VS L ++ + + F
Sbjct: 194 FRHFFPE---EVKYTYWNQMFNSRARNVGWRIDYFLVSPALLGQVKTAAIH------DQF 244
Query: 257 YGSDHCPVSLEL 268
+GSDHCPV L L
Sbjct: 245 HGSDHCPVELVL 256
>gi|418007606|ref|ZP_12647486.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
gi|410548624|gb|EKQ22818.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
Length = 252
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 34/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+G E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 106 TPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------- 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
+K + GFT ER F L G ID +R L+ + +S WS
Sbjct: 157 --------DKTNHHNAGFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFH 204
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+ S K I ++ L GSDHCPV L
Sbjct: 205 ARANNAGWRIDYFVSSRNFKPYIQDAKI------LTDIMGSDHCPVEL 246
>gi|449437801|ref|XP_004136679.1| PREDICTED: apurinic endonuclease-redox protein-like [Cucumis
sativus]
Length = 501
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 33/228 (14%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+W+ + SK Y+GTA++ + +P V + L + +++ +GRV++ EF++F+LLN Y P
Sbjct: 301 YWTCSVSKLGYSGTAIISR--IKPISVRYGLGIS--EHDGEGRVVMVEFDSFFLLNVYVP 356
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N+G + S+ R +WD + ++ + KP+I GDLN +H+EID+ +P
Sbjct: 357 NSGDGLKRLSY-RITQWDPSLSNYIKELEKSKPVILTGDLNCAHQEIDLYNP-------- 407
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 220
N++ GFT ER+ F + +D +R H + G++ W G+
Sbjct: 408 ----AGNRK---SAGFTNEERQSFETNFLQKGFVDTFRQKHPDV---VGYTYWGYRHGGR 457
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K R+DYF+VSE + +++ + L GSDHCP+ L L
Sbjct: 458 KTNKGWRLDYFLVSERVAEKVHDSYI------LPDVGGSDHCPIGLVL 499
>gi|297583616|ref|YP_003699396.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
gi|297142073|gb|ADH98830.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
Length = 254
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 30/233 (12%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
+ Y+ +W+ A+ K Y+GTA+ K +P +V F + + +GR++ EF +F+L+
Sbjct: 47 LQGYRQYWNYAEKKGYSGTAVFTK--VEPLRV-FRNGVGNERQQSEGRILTLEFASFFLV 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + + R +W+ ++ + KP+I CGD+NV+HEEID+ +
Sbjct: 104 NVYTPNS--QRDLARLHERLQWEDAFYAYLQELENEKPVIVCGDMNVAHEEIDLRNA--- 158
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + G GFT ER + + E LID+YR+ + +++ + WS
Sbjct: 159 ------------KSNRGNSGFTTEERAKMTRLQSEW-LIDSYRYYYPDQEGAYTW-WSYM 204
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R RIDYF+VS++LK + + + GSDHCP+ L ++
Sbjct: 205 KTVRERNIGWRIDYFLVSDKLKSAMNDVSIYSDVL------GSDHCPIGLTMA 251
>gi|257877428|ref|ZP_05657081.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325568814|ref|ZP_08145107.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|257811594|gb|EEV40414.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325157852|gb|EGC70008.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
Length = 250
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ + +E+ ++ +GRVI E+ F+L+ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEPALSVRYGLGIEE----HDTEGRVITLEYPEFFLITCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ ++ + KP+I CGDLNV+H+ ID+ +
Sbjct: 106 TPNS--QNELRRLDYRMTWEDAFLAYLTELKQQKPVILCGDLNVAHKNIDIKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + + + + WS
Sbjct: 158 ---------KTNQKSAGFTPEEREKFSTLLAAG-FTDTFRYFYPDAEGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF+VS++L +R++ ++ I GSDHCPV L+L+
Sbjct: 207 RKNNAGWRIDYFVVSDDLNERLLDAKIHTDII------GSDHCPVELDLN 250
>gi|317496610|ref|ZP_07954957.1| exodeoxyribonuclease III [Gemella morbillorum M424]
gi|316913275|gb|EFV34774.1| exodeoxyribonuclease III [Gemella morbillorum M424]
Length = 254
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 121/235 (51%), Gaps = 33/235 (14%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F Y +++ A+ K Y+GTA+ K +P V++ + +++ +GRVI E++ F+ +
Sbjct: 47 FDGYYSYFNYAERKGYSGTAIYTKH--KPLNVNYGIGID--EHDTEGRVITLEYDKFFFI 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+G E R W++ + ++L+ + K ++ CGDLNV+H EID+ +P
Sbjct: 103 TVYTPNSG--SELKRLDYRMTWEEDFKNYLLELNKTKGVVVCGDLNVAHTEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSG 215
K + GFT ER++F +L G ID +R+ + E + +S WS
Sbjct: 158 ------------KSNTKNAGFTPEEREKFTKLLDAG-FIDTFRYFNPE--LTGAYSWWSY 202
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ RIDYF+ S +L+ +++ ++ + GSDHCPV + L++
Sbjct: 203 RFNARKNNAGWRIDYFLTSRDLEKYLVSAKIHNDIL------GSDHCPVEVVLNK 251
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 108/222 (48%), Gaps = 31/222 (13%)
Query: 49 ADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWK 107
AD K Y+GTA+ + V + LE+ +E GR I E+ FYL+N Y PN+ +
Sbjct: 57 ADKKGYSGTAIWART--PALSVRYGLEEDLHNHE--GRAITLEYPDFYLVNLYVPNS--Q 110
Query: 108 EEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 166
E R +W+ ++ ++ KP+I CGDLNV+H EID+ +P
Sbjct: 111 NELARIDYRMQWEDDLRRYLQALDAQKPVILCGDLNVAHTEIDLKNP------------G 158
Query: 167 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 226
PN+ G GF+ ER + +L G D +R LH + + WS + R
Sbjct: 159 PNR---GAAGFSDQERGKLDELLAAG-FTDTFRHLHPDATGIYSW-WSMRFRARERNAGW 213
Query: 227 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RIDYF+VS L +I ++ L GSDHCPV+LEL
Sbjct: 214 RIDYFLVSNRLAPQIRKADI------LMDILGSDHCPVTLEL 249
>gi|116628715|ref|YP_813887.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282852356|ref|ZP_06261698.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311111551|ref|ZP_07712948.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|116094297|gb|ABJ59449.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282556098|gb|EFB61718.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311066705|gb|EFQ47045.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 275
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 30/220 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L K P+ V+ + + +GR++ EF+ +Y+ Y PN+G E
Sbjct: 82 YAGTMFLYKNTLAPE-VTKPVIGAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKR 138
Query: 113 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R+ WD++ E++ + KP+I GD NV+H ID+ HPE +
Sbjct: 139 LDDRQVWDEKYTEYLQKLDQNKPVIASGDYNVAHTPIDLKHPE---------------SN 183
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRID 229
GFT ER+ F +LK G D +R +H +++ +SW + K RID
Sbjct: 184 HHNAGFTDEERQDFDKLLKLG-FTDTFRKVH--GNVEGVYSWWAQRVRTSKANNSGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
Y+IVS + D++ EM G DHCP+ LE++
Sbjct: 241 YYIVSNRIADQVTKSEMLDTGER------KDHCPIMLEIN 274
>gi|81428949|ref|YP_395949.1| exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
gi|78610591|emb|CAI55642.1| Exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
Length = 254
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 37/234 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+G A+ K +P V++ +++ +++ +GRVI E+ F+L+ Y
Sbjct: 50 YHQYFNYAEKKGYSGAAIFTKH--EPLNVTYGIQQP--EHDHEGRVITLEYPQFFLITCY 105
Query: 101 APNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFF 156
PN+ +N +R R W+ + +V Q + KP+I+CGDLNV+HE ID+ +
Sbjct: 106 TPNS-----QNQLKRLDYRMTWENAFRAYVQQLGTQKPVIFCGDLNVAHEAIDLKN---- 156
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
++ + GF+ ER + +L+ G D +R+ + ++ D WS
Sbjct: 157 -----------DRTNHKSAGFSDEERVQMTTLLQSG-FTDTFRYFYPDQ-TDIYSWWSYR 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ RIDYFI S+EL+ +++ ++ YGSDHCPV L+ +
Sbjct: 204 FHARDNNAGWRIDYFITSDELQPKLMDAKIHTE------IYGSDHCPVELDTQD 251
>gi|392987530|ref|YP_006486123.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
gi|392334950|gb|AFM69232.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
Length = 250
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ VS+ + ++ +GR+I E+ F+L+ Y
Sbjct: 50 YHQYWNYAERKGYSGTAIFAKE--PALNVSYGMGIDL--HDQEGRLITLEYPEFFLVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W++ ++ + KP+I CGDLNV+H+EID+ +
Sbjct: 106 TPNS--QNELKRLDYRLQWEEAFYHYLEELKKQKPVIVCGDLNVAHQEIDLKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT+ ER F +L G ID +R+ + E+ + WS
Sbjct: 158 ---------KTNQKNAGFTMEERTAFSHLLANG-FIDTFRYFYPEQTGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+ S+ELK R+I ++ GSDHCPV L+L
Sbjct: 207 RKNNAGWRIDYFLTSDELKPRLIDAKIH------TSIMGSDHCPVELDL 249
>gi|148927710|ref|ZP_01811154.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
gi|147886940|gb|EDK72466.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
Length = 266
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 110/238 (46%), Gaps = 38/238 (15%)
Query: 45 WWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKY-----------EPDGRVILAEFET 93
W S Y+GTA+ K QP + + +K +GRV+ AEFE
Sbjct: 55 WNSAVKKGYSGTAIFSKT--QPLSIINGFPEDIIKKYKVEGDVYGDPNKEGRVMAAEFED 112
Query: 94 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSH 152
FY++ Y PN+ +E R + WD +V Q KP+I+CGDLNV+H E D++
Sbjct: 113 FYIVTVYTPNSK-RELTRLTLREKHWDPAFLAYVKQLEKTKPVIFCGDLNVAHTEDDLAR 171
Query: 153 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 212
P+ + G+ GFT ER+ F L G +D +R + + +
Sbjct: 172 PD---------------TNHGEHGFTDEEREGFQKFLDAG-FVDTFRMFTPKGNGHYTW- 214
Query: 213 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
W+ + R RIDYF+VS LK ++ + ++ GSDHCP+S+EL +
Sbjct: 215 WTHWANARARNVGWRIDYFLVSHALKSKVKSAKIHA------DVMGSDHCPISIELGK 266
>gi|423335525|ref|ZP_17313300.1| unnamed protein product [Lactobacillus reuteri ATCC 53608]
gi|337728755|emb|CCC03874.1| unnamed protein product [Lactobacillus reuteri ATCC 53608]
Length = 275
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 119/265 (44%), Gaps = 44/265 (16%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 69
QE K ++ L +++ L F NY++ W A YAGT L ++PK V
Sbjct: 43 QETKLSKNGPTKKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-V 97
Query: 70 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEF 126
++ + +GR+I EF FY+ Y PN+G N +R R+ WD +++
Sbjct: 98 TYPKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDY 152
Query: 127 VLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 185
+ + KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 153 LRELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHF 197
Query: 186 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIA 243
+L G D++R LH D +SW + K RIDY++VS+ L D+I
Sbjct: 198 SKLLAAG-FTDSFRHLH--PDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITE 254
Query: 244 CEMQGHGIELEGFYGSDHCPVSLEL 268
M G DH P+ LE+
Sbjct: 255 AGMIDSGER------RDHTPIILEI 273
>gi|301096360|ref|XP_002897277.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
gi|262107161|gb|EEY65213.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
Length = 362
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 113/231 (48%), Gaps = 36/231 (15%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV--------- 69
+TK R+E L + P +Q W YA TA+ K +P V
Sbjct: 148 ETKICRDE---LQKLEDFLPQYEHQYWSCAIKKGYASTAIFTKT--KPLSVKDEIVVGDH 202
Query: 70 -SFSLEKTALK-YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI-QEF 126
S + K+A + +GR + EF F+L++TY PN G K E F R +WDK + +E
Sbjct: 203 DSKGVAKSANGGKDQEGRFLALEFPKFWLVHTYVPNAGGKLERLDF-RTTQWDKAMHREM 261
Query: 127 VLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 186
KP+IWCGDLNV+H+EID+ +P K + GFT ER+ FG
Sbjct: 262 KEMEKTKPVIWCGDLNVAHQEIDIHNP---------------KGNHKSAGFTDEERESFG 306
Query: 187 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 237
IL++G +D +R LH + F + N K +G R+DYF+VSE+L
Sbjct: 307 EILEDG-FVDTFRHLHPDTVEYSYFGYRHNMRAKNKG--WRLDYFVVSEKL 354
>gi|417986286|ref|ZP_12626858.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
gi|410526479|gb|EKQ01366.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
Length = 252
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 34/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+G E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 106 TPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------- 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
+K + GFT ER F L G ID +R L+ + +S WS
Sbjct: 157 --------DKTNHHNAGFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFH 204
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+ S K I ++ L GSDHCPV L
Sbjct: 205 ARANNAGWRIDYFVSSRNFKPYIQDAKI------LTEIMGSDHCPVEL 246
>gi|227544091|ref|ZP_03974140.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|338202504|ref|YP_004648649.1| exodeoxyribonuclease [Lactobacillus reuteri SD2112]
gi|227185924|gb|EEI65995.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|336447744|gb|AEI56359.1| exodeoxyribonuclease [Lactobacillus reuteri SD2112]
Length = 275
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 119/265 (44%), Gaps = 44/265 (16%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 69
QE K ++ L +++ L F NY++ W A YAGT L ++PK V
Sbjct: 43 QETKLSKNGPTKKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-V 97
Query: 70 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEF 126
++ + +GR+I EF FY+ Y PN+G N +R R+ WD +++
Sbjct: 98 TYPKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDY 152
Query: 127 VLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 185
+ + KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 153 LHELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHF 197
Query: 186 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIA 243
+L G D++R LH D +SW + K RIDY++VS+ L D+I
Sbjct: 198 SKLLAAG-FTDSFRHLH--PDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITE 254
Query: 244 CEMQGHGIELEGFYGSDHCPVSLEL 268
M G DH P+ LE+
Sbjct: 255 AGMIDSGER------RDHTPIILEI 273
>gi|403335404|gb|EJY66875.1| Exonuclease III [Oxytricha trifallax]
gi|403370677|gb|EJY85206.1| Exonuclease III [Oxytricha trifallax]
Length = 583
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 34/234 (14%)
Query: 40 KNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K+Y+ +W+ + SK Y+GT L+ K +P KV+F + +++ +GRVI AEF F L+
Sbjct: 129 KDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTFDI--GIEEHDQEGRVITAEFSKFVLV 184
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPE 154
Y PN+G S+ R ++WDK +++ + + KPLI GDLNV+ E+DV +
Sbjct: 185 AVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTRIETNKPLILTGDLNVARNELDVFDTK 243
Query: 155 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWS 214
K+ Y P ERK F + + G ID +R L+ +K FS
Sbjct: 244 --GKDKVACYTP-------------EERKSFESFINRG-YIDTFRHLYPDKREYTYFSAR 287
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
N K K RIDYF+V ++ D + ++ H + + GSDH PV L L
Sbjct: 288 FN--NKVTNKGWRIDYFVVHQD--DINMVTDVTIH----KDYNGSDHVPVCLHL 333
>gi|322378535|ref|ZP_08052983.1| exodeoxyribonuclease [Helicobacter suis HS1]
gi|321149049|gb|EFX43501.1| exodeoxyribonuclease [Helicobacter suis HS1]
Length = 306
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 122/241 (50%), Gaps = 35/241 (14%)
Query: 35 SSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFET 93
+S F+ Y+++W+ A K Y+G L K P +VS+ + +++ +GRVI E+
Sbjct: 94 ASFCFEGYEVFWNSAQKKGYSGVLTLSK--IAPLQVSYGIGIA--EHDTEGRVITCEYPN 149
Query: 94 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSH 152
FYL+N Y PN + R +W++ + F+ K ++ CGDLNV+H EID+++
Sbjct: 150 FYLVNVYTPNA--QRGLLRLPYRLEWERSFRGFLQNLMQKKAVVVCGDLNVAHNEIDLTN 207
Query: 153 PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 212
P+ N+ + GF+ ER F +L G LID +R + K ++
Sbjct: 208 PQ------------SNRYN---AGFSDPERDAFRQLLNLG-LIDTFRHFYPTKAE--SYT 249
Query: 213 WSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
W + I + R K + RIDYF+ S+ L + + + H + GSDHCPV L+L E
Sbjct: 250 W-WSYINQARAKNIGWRIDYFLTSQTLNSCLQSAYIYNHIL------GSDHCPVGLDLHE 302
Query: 271 A 271
Sbjct: 303 T 303
>gi|160945969|ref|ZP_02093195.1| hypothetical protein FAEPRAM212_03502 [Faecalibacterium prausnitzii
M21/2]
gi|158443700|gb|EDP20705.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii M21/2]
gi|295103228|emb|CBL00772.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii SL3/3]
Length = 250
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 106/218 (48%), Gaps = 33/218 (15%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GTA K LE+ ++ +GRV+ E+ FYL+N Y PN+ ++
Sbjct: 62 YSGTACWCKTAPLAVTTGIGLEQ----HDHEGRVLTLEYPGFYLVNCYTPNS--QDGLKR 115
Query: 113 FQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R +W+ + ++L K P+I CGDLNV+H E+D+ + AK N
Sbjct: 116 LDYRMEWEDAFRAYLLALDAKKPVILCGDLNVAHTEMDIKN------AKTNRM------- 162
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDY 230
GFT ER + +L G D++R +H + + +S WS + + RIDY
Sbjct: 163 --SAGFTDQERAKMTELLAAG-FADSFRVVHPD---EVKYSWWSYRFHAREKNAGWRIDY 216
Query: 231 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
FIVS + DRI A E+ +GSDHCPV L++
Sbjct: 217 FIVSRRIADRIRAAEIHNE------IFGSDHCPVELQI 248
>gi|42519716|ref|NP_965646.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
gi|41584005|gb|AAS09612.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
Length = 261
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K YAGTA+ K+ K ++ + + + +GR I EF FY +N
Sbjct: 57 YYQYWNYAERKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFSNFYFINVQ 112
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
P +G K + F R W + + +V + KP+I GD++V+HE ID++ P+
Sbjct: 113 VPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDMSVAHERIDLAEPD----- 165
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
++ +PGFT ERK F +L G ID +R+ H ++ +S+
Sbjct: 166 ----------DNHHRPGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSYRDK--- 211
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R + + R+DYF+VS L+DR+ ++ L GSDHCP+ L++
Sbjct: 212 EARAENLGWRLDYFLVSNNLEDRLTNAKI------LSNIMGSDHCPIELDV 256
>gi|159113893|ref|XP_001707172.1| Endonuclease/Exonuclease/phosphatase [Giardia lamblia ATCC 50803]
gi|157435275|gb|EDO79498.1| Endonuclease/Exonuclease/phosphatase [Giardia lamblia ATCC 50803]
Length = 322
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 116/237 (48%), Gaps = 41/237 (17%)
Query: 47 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 106
S A YA TA+ K+ + ++ +++ +GR + +F L++ YAPN+G
Sbjct: 111 STAKQGYASTAMFAKESVP--VLDLCMQMGDPEFDSEGRFLHVSLPSFELIHVYAPNSGR 168
Query: 107 KEEENSF---------QRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEF 155
+F R K++K I +++ L +GK +++CGDLNV+H EID+ +P
Sbjct: 169 GSSGKAFTSKNRPANLSTRIKYEKLISKYIGNLVAAGKDVVYCGDLNVAHNEIDLYNP-- 226
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K + PGFT ER F +L LIDA+R +H + +SW
Sbjct: 227 -------------KSNHFSPGFTDEERNAFSKLLDGHGLIDAFRAMHPHR---INYSWFS 270
Query: 216 NPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYG-SDHCPVSLELS 269
N G+ R ++ RIDYF+V+ ++ R+ ++ L+ + SDH P+ + L+
Sbjct: 271 N-FGRAREQKHGWRIDYFVVTSKIFKRVTTVDI------LDDYNSYSDHVPIIMTLT 320
>gi|432328166|ref|YP_007246310.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
gi|432134875|gb|AGB04144.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
Length = 257
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 31/217 (14%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGTAL K +P+ VSF + +++ +GRVI AE+E FYL+N Y PN+ +
Sbjct: 69 YAGTALFTK--IEPESVSFGIGDE--RFDSEGRVITAEYERFYLVNAYFPNS--QHGLTR 122
Query: 113 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+ ++D++I ++ + KP++ CGD NV+H+EID+++P K++
Sbjct: 123 LDFKIEFDRKIHAYLNELRRSKPVVLCGDFNVAHKEIDLANP---------------KQN 167
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
GFT ER L +G +D +R KE +++ N + R R+DYF
Sbjct: 168 EKNAGFTPEERAWMDEFLNDG-YVDTFRMFTKEGGHYTWWTYRFN--ARARNIGWRVDYF 224
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+VS++L + + + YGSDH P+++ L
Sbjct: 225 VVSKDLVPHVKKSWI------MSDVYGSDHAPIAMIL 255
>gi|381150965|ref|ZP_09862834.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
gi|380882937|gb|EIC28814.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
Length = 254
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 110/235 (46%), Gaps = 31/235 (13%)
Query: 36 SPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
+ Y I+ + A+ K Y+G +L+ + +P V + +++ +GRVI AEFE F
Sbjct: 47 TADIDGYHIYSNCAERKGYSGVSLMSRA--EPLAVVKDIGIA--EHDREGRVIAAEFEHF 102
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
+L+N Y PN+G +E RR WD ++L+ S KP+I CGD NV+H EID++ P
Sbjct: 103 HLVNVYVPNSG--QELVRLDYRRTWDAEFLTYLLKLESRKPVIVCGDFNVAHREIDIARP 160
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
+ A N G+T AE F L G +D +R H D W
Sbjct: 161 K----ANYN----------KSAGYTQAEIDGFSRFLDAG-FVDTFR--HHHPDTVAYSWW 203
Query: 214 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
S + RIDY + S L D++ L GSDHCPV +E+
Sbjct: 204 SFRANARANNIGWRIDYALASRALADKV------KQAFILPEVTGSDHCPVGIEI 252
>gi|350565008|ref|ZP_08933806.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
gi|348664197|gb|EGY80712.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
Length = 250
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 30/217 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GTA+ K +P V++ + +++ +GRVI EFE +Y + Y PN+ K E
Sbjct: 62 YSGTAVFTK--LKPISVTYGI--GIEEHDTEGRVITLEFEDYYFITCYTPNSKRKLERLD 117
Query: 113 FQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+ R W+ + ++ + KP++ CGDLNV+H EID+++P+ +
Sbjct: 118 Y--RVVWEDAFRNYLNELDKNKPIVLCGDLNVAHNEIDLANPD---------------TN 160
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
GF+ ER +F +L G +D +R + ++ + + WS + R RIDYF
Sbjct: 161 HKSAGFSDEERAKFTELLASG-YVDTFRHFYPDRADEYSW-WSNFNKARERNIGWRIDYF 218
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+VSE DRI ++ + GSDHCPV + L
Sbjct: 219 VVSERFLDRIEDSKIH------QSVMGSDHCPVEIIL 249
>gi|348027881|ref|YP_004870567.1| exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
gi|347945224|gb|AEP28574.1| Exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
Length = 254
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 128/254 (50%), Gaps = 38/254 (14%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 77
+TKA E+ ++ AL Y I+ + A K Y+GT+++ + QP V+ +
Sbjct: 35 ETKAQDEQ---VIEALCE--LNGYHIFTNSAVKKGYSGTSIITR--IQPIDVTKDMGIE- 86
Query: 78 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLI 136
+++ +GRV+ AEF YL+ Y PN+G + S+ R +WD ++ + KP++
Sbjct: 87 -EHDQEGRVLCAEFSDLYLVTVYTPNSGNDLKRLSY--RAQWDADFLSYIKKLEEKKPVV 143
Query: 137 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 196
CGDLN +H +ID++ P+ PN G+T E ++ G +D
Sbjct: 144 ICGDLNAAHRDIDLARPK------------PNYNK--SAGYTQQEIDGIDNLVAAG-YVD 188
Query: 197 AYRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 255
+R++H EK +SW G + R RIDYF+VS +L+ +I E+
Sbjct: 189 TFRYVHPEK---VKYSWWSYRAGARERNVGWRIDYFLVSPKLQGQIHDAEIHN------D 239
Query: 256 FYGSDHCPVSLELS 269
+GSDHCPVS++LS
Sbjct: 240 IHGSDHCPVSVQLS 253
>gi|403336088|gb|EJY67231.1| Exonuclease III [Oxytricha trifallax]
Length = 640
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 34/234 (14%)
Query: 40 KNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K+Y+ +W+ + SK Y+GT L+ K +P KV+F + +++ +GRVI AEF F L+
Sbjct: 129 KDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTFDI--GIEEHDQEGRVITAEFSKFVLV 184
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPE 154
Y PN+G S+ R ++WDK +++ + + KPLI GDLNV+ E+DV +
Sbjct: 185 AVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTRIETNKPLILTGDLNVARNELDVFDTK 243
Query: 155 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWS 214
K+ Y P ERK F + + G ID +R L+ +K FS
Sbjct: 244 --GKDKVACYTP-------------EERKSFESFINRG-YIDTFRHLYPDKREYTYFSAR 287
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
N K K RIDYF+V ++ D + ++ H + + GSDH PV L L
Sbjct: 288 FN--NKVTNKGWRIDYFVVHQD--DINMVTDVTIH----KDYNGSDHVPVCLHL 333
>gi|403365259|gb|EJY82409.1| Exonuclease III [Oxytricha trifallax]
Length = 645
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 34/234 (14%)
Query: 40 KNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K+Y+ +W+ + SK Y+GT L+ K +P KV+F + +++ +GRVI AEF F L+
Sbjct: 129 KDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTFDI--GIEEHDQEGRVITAEFSKFVLV 184
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPE 154
Y PN+G S+ R ++WDK +++ + + KPLI GDLNV+ E+DV +
Sbjct: 185 AVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTRIETNKPLILTGDLNVARNELDVFDTK 243
Query: 155 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWS 214
K+ Y P ERK F + + G ID +R L+ +K FS
Sbjct: 244 --GKDKVACYTP-------------EERKSFESFINRG-YIDTFRHLYPDKREYTYFSAR 287
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
N K K RIDYF+V ++ D + ++ H + + GSDH PV L L
Sbjct: 288 FN--NKVTNKGWRIDYFVVHQD--DINMVTDVTIH----KDYNGSDHVPVCLHL 333
>gi|148544314|ref|YP_001271684.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|184153692|ref|YP_001842033.1| exodeoxyribonuclease [Lactobacillus reuteri JCM 1112]
gi|227365036|ref|ZP_03849073.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|325681652|ref|ZP_08161172.1| exodeoxyribonuclease [Lactobacillus reuteri MM4-1A]
gi|148531348|gb|ABQ83347.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|183225036|dbj|BAG25553.1| exodeoxyribonuclease [Lactobacillus reuteri JCM 1112]
gi|227069924|gb|EEI08310.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|324978964|gb|EGC15911.1| exodeoxyribonuclease [Lactobacillus reuteri MM4-1A]
Length = 275
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 119/265 (44%), Gaps = 44/265 (16%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 69
QE K ++ L +++ L F NY++ W A YAGT L ++PK V
Sbjct: 43 QETKLSKNGPTKKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-V 97
Query: 70 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEF 126
++ + +GR+I EF FY+ Y PN+G N +R R+ WD +++
Sbjct: 98 TYPKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDY 152
Query: 127 VLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 185
+ + KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 153 LHELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHF 197
Query: 186 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIA 243
+L G D++R LH D +SW + K RIDY++VS+ L D+I
Sbjct: 198 SKLLAAG-FTDSFRHLH--PDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITE 254
Query: 244 CEMQGHGIELEGFYGSDHCPVSLEL 268
M G DH P+ LE+
Sbjct: 255 AGMIDSGER------RDHTPIILEI 273
>gi|328956310|ref|YP_004373643.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
gi|328456634|gb|AEB07828.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
Length = 283
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 46/243 (18%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKV-----SFSLEKTALKYEP---DGRVILAEFET 93
+Q W A Y+GTA+ ++ QP + + + EP +GRV EFE
Sbjct: 71 HQTWSYAARKGYSGTAVFSRE--QPIRTLRADAMLDVVEGGELLEPAIREGRVCALEFER 128
Query: 94 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEIDV 150
F+ + Y PN+ ++ R WD+ + F+ Q KP++ CGD NV+H EID+
Sbjct: 129 FWFADVYTPNS--QDGLARLPVRLAWDEAYRAFLKQLERMGDKPVVTCGDFNVAHNEIDL 186
Query: 151 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 210
+P K + G GF+ ER F +L+ G D +R+L+ D+
Sbjct: 187 RNP---------------KSNRGNAGFSDEERASFSRLLEAG-FTDTFRYLY--PDVRDA 228
Query: 211 FSWSGNPIGKYRGKRM----RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+SW ++ +R RIDYF+VS+ ++DRI+ ++ + +GSDHCPV L
Sbjct: 229 YSWWSY---RFHARRTNAGWRIDYFLVSDSVRDRIVEATIR------QDVFGSDHCPVEL 279
Query: 267 ELS 269
++
Sbjct: 280 VIA 282
>gi|395244636|ref|ZP_10421596.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394483087|emb|CCI82604.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 275
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 30/219 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L K + PK V++ + +GR+I EF+ Y+ Y PN+G E
Sbjct: 82 YAGTMFLYKNTYDPK-VTYPKIDAPEPMDDEGRIITLEFDNCYVSQVYTPNSG--NELRR 138
Query: 113 FQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R+ WD++ + ++ + KP+I GD NV+H ID+ HP+ +
Sbjct: 139 LDDRQIWDEKYRLYLQELDKNKPVIASGDYNVAHTPIDLKHPQ---------------NN 183
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRID 229
GFT ER+ F A+L G D +R +H +++ +SW + K RID
Sbjct: 184 HHNAGFTDEERRDFTALLDTG-FTDTFRKVH--GNIEGVYSWWAQRVRTSKQNNSGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
Y+IVS + D++ EM G DHCP+ LE+
Sbjct: 241 YYIVSNRIADKVTKSEMIDTGDR------KDHCPLILEI 273
>gi|313891277|ref|ZP_07824895.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|416852294|ref|ZP_11909439.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
gi|313120344|gb|EFR43465.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|356739783|gb|EHI65015.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
Length = 275
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 39 FKNY-QIWWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F NY +W S A YAGT L K+ P V+F + +GR+I EFE F
Sbjct: 64 FPNYLHVWRSSVEPARKGYAGTMFLYKQTLNPV-VTFPEIGAPTTMDSEGRIITLEFEDF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R++WD + +++ Q KP++ GD NV+H+EID+++P
Sbjct: 123 FVTQVYTPNAG--DGLRRLADRQEWDIKYADYLTQLDAQKPVLATGDYNVAHKEIDLANP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ GFT ER F A+L++G D +R LH D+ ++W
Sbjct: 181 S------------SNRR---SAGFTDEERAGFTALLEKG-FTDTFRHLH--GDLPNVYTW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S + D+++ EM G DH P+ LE+
Sbjct: 223 WAQRSKTSKMNNTGWRIDYWLTSNRIADKVLKSEMIDSGAR------QDHTPILLEI 273
>gi|315654117|ref|ZP_07907033.1| exodeoxyribonuclease III [Lactobacillus iners ATCC 55195]
gi|325912295|ref|ZP_08174692.1| putative exodeoxyribonuclease III [Lactobacillus iners UPII 143-D]
gi|315488813|gb|EFU78459.1| exodeoxyribonuclease III [Lactobacillus iners ATCC 55195]
gi|325475954|gb|EGC79123.1| putative exodeoxyribonuclease III [Lactobacillus iners UPII 143-D]
Length = 168
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 29/191 (15%)
Query: 81 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 139
+ +GR+I EF +FYL Y PN+G E R WD + QE++ + KP+I G
Sbjct: 2 DQEGRIITLEFNSFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLTELDQNKPVIASG 59
Query: 140 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 199
D NV+H+EID+ HPE + GFT ERK F +L G ID +R
Sbjct: 60 DYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFR 103
Query: 200 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 257
+++ D+ +SW I K RIDY++VS+ L D+I +M G
Sbjct: 104 YIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR----- 156
Query: 258 GSDHCPVSLEL 268
DHCP+ L++
Sbjct: 157 -KDHCPILLKI 166
>gi|308162466|gb|EFO64862.1| Endonuclease/Exonuclease/phosphatase [Giardia lamblia P15]
Length = 322
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 39/236 (16%)
Query: 47 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 106
S A YA TA+ VK+ ++ ++ +++ +GR + +F L++ Y PN+G
Sbjct: 111 STAKQGYASTAMFVKESVP--VLNLCMQMGEPEFDSEGRFLHVSLPSFELIHVYVPNSGR 168
Query: 107 KEEENSFQRRRK---------WDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDVSHPEF 155
+F + K ++K I +++ L +GK +++CGDLNV+H EID+ +P
Sbjct: 169 GSNGKTFTSKNKPANLPTRINYEKLISKYIGNLVAAGKDVVYCGDLNVAHNEIDLYNP-- 226
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K + PGFT ER F +L LIDA+R +H + +SW
Sbjct: 227 -------------KGNHFNPGFTDEERNAFSKLLDGHGLIDAFRAMHPHR---VKYSWFS 270
Query: 216 NPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
N G+ R ++ RIDYF+V+ ++ R+ ++ ++ Y SDH P+ + L+
Sbjct: 271 N-FGRAREQKHGWRIDYFVVTHQIFRRVTTVDV----LDDHNSY-SDHVPIIMTLT 320
>gi|440793147|gb|ELR14342.1| exodeoxyribonuclease III, putative, partial [Acanthamoeba
castellanii str. Neff]
Length = 384
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 112/253 (44%), Gaps = 57/253 (22%)
Query: 47 SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGW 106
S A Y+G A+ K ++P +V + +++ +GRVI EF FYL+ +Y PN+G
Sbjct: 154 STAIKGYSGVAMYSK--YRPLRVHHGI--GVEEHDNEGRVITLEFAGFYLVGSYIPNSG- 208
Query: 107 KEEENSFQRRRKWDKRIQEFVLQCS----------------------------GKPLIWC 138
+E + R++W++ ++ ++L S GKP+IWC
Sbjct: 209 -DELKRLEYRQRWNRDMEAYLLSLSTSGLKAGLDVHPHGHELEYRVLDESERKGKPVIWC 267
Query: 139 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 198
GDLNV+HEEID+ P N Y GFT ER F ++K +D+Y
Sbjct: 268 GDLNVAHEEIDLHDPAN------NHYT---------SGFTDEERDDFTRVIKTMDFVDSY 312
Query: 199 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 258
R H+ WS + R R+DYF+ L + ++ + G
Sbjct: 313 R--HENPTRQSYSFWSYRSAARARNMGWRLDYFLYQRALTPYVRKAFIRNFVL------G 364
Query: 259 SDHCPVSLELSEA 271
SDHCPV L L A
Sbjct: 365 SDHCPVGLLLDPA 377
>gi|194467701|ref|ZP_03073688.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194454737|gb|EDX43634.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 275
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 119/265 (44%), Gaps = 44/265 (16%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 69
QE K ++ L +++ L F NY++ W A YAGT L ++PK +
Sbjct: 43 QETKLSKNGPTKKHLTVLQEL----FPNYEVAWRSSVEPARKGYAGTMYLYLAQYEPK-I 97
Query: 70 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEF 126
++ + +GR+I EF FY+ Y PN+G N +R R+ WD +++
Sbjct: 98 TYPKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSG-----NGLKRLDERQTWDDCYRDY 152
Query: 127 VLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 185
+ + KP+I GD NV+HEEID++HP + GFT ER F
Sbjct: 153 LHELDQQKPVIASGDFNVAHEEIDLAHP---------------ATNHHSAGFTDEERTHF 197
Query: 186 GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIA 243
+L G D++R LH D +SW + K RIDY++VS+ L D+I
Sbjct: 198 SKLLAAG-FTDSFRHLH--PDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITE 254
Query: 244 CEMQGHGIELEGFYGSDHCPVSLEL 268
M G DH P+ LE+
Sbjct: 255 AGMIDSGER------RDHTPIILEI 273
>gi|452857678|ref|YP_007499361.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452081938|emb|CCP23712.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 252
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 125/257 (48%), Gaps = 33/257 (12%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE + D +E K+ + P + Y +W+ A K Y+GTA+ K+ +P V +
Sbjct: 25 QETEADILCLQETKVQDGQVSLQP--EGYHAYWNYAVKKGYSGTAVFSKE--KPLHVFYG 80
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 131
L ++ +GRVI EFE +++N Y PN K R +W+ ++++ +
Sbjct: 81 LGID--DHDQEGRVITLEFENVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDR 136
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP+I CGDLNV+H EID+ +P K + GF+ ER+ F A+L
Sbjct: 137 KKPVILCGDLNVAHREIDLKNP---------------KANRKNAGFSEQEREAFSALLNA 181
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 251
G D++R+L+ +++ + WS + + R+DY IVS+ LK RI +
Sbjct: 182 G-FTDSFRYLYPDREGAYSW-WSYRTNAREKNIGWRLDYVIVSDRLKQRISQAAI----- 234
Query: 252 ELEGFYGSDHCPVSLEL 268
GSDHCPV + +
Sbjct: 235 -CADIMGSDHCPVEMTV 250
>gi|417937397|ref|ZP_12580697.1| exodeoxyribonuclease III [Streptococcus infantis SK970]
gi|343391661|gb|EGV04234.1| exodeoxyribonuclease III [Streptococcus infantis SK970]
Length = 275
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 30/219 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L KK P +SF + +GR+I EF+TF++ Y PN G +
Sbjct: 82 YAGTMFLYKKELTPT-ISFPEIGAPSTMDSEGRIITLEFDTFFVTQVYTPNAG--DGLKR 138
Query: 113 FQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+ R+ WD + E++ Q KP++ GD NV+H+EID+++P N+
Sbjct: 139 LEERQVWDVKYAEYLAQLDKQKPVLSTGDYNVAHKEIDLANP------------ASNRR- 185
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRID 229
PGFT ER+ F +L +G D +R +H DM ++W + K RID
Sbjct: 186 --SPGFTDEEREGFTNLLAKG-FTDTFRHIH--GDMPERYTWWAQRSKTSKINNTGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
Y++ S + D++ +M G DH P+ LE+
Sbjct: 241 YWLTSNRVADKVTKSDMIDSGAR------QDHTPIVLEI 273
>gi|313897464|ref|ZP_07831007.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
gi|312957834|gb|EFR39459.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
Length = 254
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 30/228 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
YQ S Y+GT + K+ +P V++ L +++ +GRVI E+E FYL+ Y
Sbjct: 51 YQYMNSAEKKGYSGTMVFSKQ--KPLSVTYGL--GIEEHDHEGRVITCEYEDFYLVCVYT 106
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+ K+ R W+ + ++ + + K ++ CGDLNV+H+EID+ +P
Sbjct: 107 PNS--KDGLLRLDYRMVWEDAFRAYLHKLNETKSVLVCGDLNVAHKEIDLKNP------- 157
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GFT ER + +L+ G ID++R+L+ +++ + WS +
Sbjct: 158 --------KTNRRNAGFTDEERGKMSVLLESG-FIDSFRYLYPKQEGIYSW-WSYRFKAR 207
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE+ K+ I + YGSDHCPVSLE
Sbjct: 208 EKNAGWRIDYFLVSEDAKEAIREARIH------TDIYGSDHCPVSLEF 249
>gi|257783920|ref|YP_003179137.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
gi|257472427|gb|ACV50546.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
Length = 259
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 35/227 (15%)
Query: 46 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPD-GRVILAEFETFYLLNTYAPN 103
W+ AD K Y+GTA+ ++ P +V + + D GRV EFE F+ + Y PN
Sbjct: 62 WNYADRKGYSGTAVFSRET--PLQV---IRQIGCPVADDEGRVCALEFEKFWFVCVYTPN 116
Query: 104 NGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162
+ K++ R +WD+ ++F+ + S KP+I CGD NV+H EID+ +P
Sbjct: 117 S--KDQLARLDERLEWDQHYRDFLAELSKQKPVITCGDFNVAHNEIDLKNPS-------- 166
Query: 163 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKY 221
N+++ GF+ ER+ F +L G D +R+ H D+ +S WS +
Sbjct: 167 ----SNRQN---AGFSDEERESFTKLLDAG-FTDTFRYRH--PDITGAYSWWSYRFNARK 216
Query: 222 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RIDYF+VS+ + +++ + + L YGSDHCP+ L +
Sbjct: 217 NNAGWRIDYFLVSDRIAEQVKSASI------LSEIYGSDHCPIELSI 257
>gi|291528729|emb|CBK94315.1| exodeoxyribonuclease III [Eubacterium rectale M104/1]
Length = 251
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P VS+ + +++ +GRVI E++ FYL+ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKN--EPLSVSYGI--GIEEHDKEGRVITLEYDNFYLVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ +E++ K P++ CGDLNV+H EID+ +P
Sbjct: 106 TPNS--QNELKRLPYRMQWEDDFREYLKTLDAKKPVVLCGDLNVAHNEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GF+ ER + +L G D +R+ + D + +S WS
Sbjct: 158 ---------KTNRKNAGFSDEERAKMTELLGSG-FTDTFRYFY--PDAEGIYSWWSYRFK 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYFI S+ + D+ +Q I + GSDHCPV +++
Sbjct: 206 AREKNAGWRIDYFITSKRINDK-----LQKAAIHTDVL-GSDHCPVEVDI 249
>gi|13540877|ref|NP_110565.1| exonuclease III [Thermoplasma volcanium GSS1]
gi|14324259|dbj|BAB59187.1| exodeoxyribonuclease [Thermoplasma volcanium GSS1]
Length = 252
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 117/256 (45%), Gaps = 44/256 (17%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSL 73
QE K D K+ EE L + + P K Y+GT L ++ +P VS+
Sbjct: 38 QETKVDVKSVPEEMYHLGYHVYNNPAKR---------KGYSGTMTLSRE--KPIDVSYGF 86
Query: 74 EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SG 132
E +GR++ EF+ FY +N Y PN+ + + +DK+ +
Sbjct: 87 E------SEEGRILNLEFDNFYFINAYFPNS--QHGLTRLDLKLDFDKKFLGYANDLRKK 138
Query: 133 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG 192
KPLI CGD NV+HEEID++ P K++ GFTI ER L G
Sbjct: 139 KPLIICGDFNVAHEEIDIARP---------------KDNEHNAGFTIEERTWMSQFLSSG 183
Query: 193 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 252
+D +R + +S+ N K G RIDYF+VS+++KD++ A +
Sbjct: 184 -YVDTFRLFTTDGGHYSWWSYRFNAREKNIG--WRIDYFVVSDDIKDKVKASRI------ 234
Query: 253 LEGFYGSDHCPVSLEL 268
LE GSDH PV LE+
Sbjct: 235 LENVKGSDHAPVELEI 250
>gi|429205564|ref|ZP_19196836.1| exodeoxyribonuclease A [Lactobacillus saerimneri 30a]
gi|428146175|gb|EKW98419.1| exodeoxyribonuclease A [Lactobacillus saerimneri 30a]
Length = 275
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 30/221 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L K+ P VS+ + +GR+I EF FY+ Y PN G +
Sbjct: 82 YAGTMYLYKRDLAPV-VSYPRIGAPEPMDDEGRIITLEFANFYVTEVYTPNAG--DGLKR 138
Query: 113 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R+ WD++ ++ + KP++ GD NV+H EID++HPE +
Sbjct: 139 LTERQGWDQKYAAYLHELDQKKPVLASGDFNVAHHEIDLAHPE---------------NN 183
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRID 229
GFT ER F +L G D++R +H D+ +SW + K RID
Sbjct: 184 HRSAGFTDEERAGFTNLLSYG-FTDSFRHVH--GDVTGVYSWWAQRVRTSKANNSGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270
Y++VSE + D+++ EM G DHCP+ LE+ +
Sbjct: 241 YWLVSERMVDQVVRSEMIATGDR------RDHCPILLEIKD 275
>gi|55821526|ref|YP_139968.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
gi|55737511|gb|AAV61153.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
Length = 275
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 109/237 (45%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y I W A YAGT L KK P +++ + +GR+I EF+TF
Sbjct: 64 FPDYVITWRSSVEPARKGYAGTMFLYKKELTPV-ITYPEIGAPSTMDCEGRIITLEFDTF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WDK+ +++ + KP++ GD NV+H+EID+++P
Sbjct: 123 FVTQVYTPNAG--DGLKRLLERQIWDKKYADYLAELDAQKPVLATGDYNVAHKEIDLANP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L +G ID YR H D+ ++W
Sbjct: 181 S------------SNRR---SPGFTDEERAGFTNLLNKG-FIDTYR--HLNGDVTGAYTW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S + D++I M G DH P+ LE+
Sbjct: 223 WAQRSKTSKINNTGWRIDYWLTSNRIADKVIKSNMIDSGDR------QDHTPIVLEI 273
>gi|238922913|ref|YP_002936426.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
gi|238874585|gb|ACR74292.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
Length = 251
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P VS+ + +++ +GRVI E++ FYL+ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKN--EPLSVSYGI--GIEEHDKEGRVITLEYDNFYLVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ +E++ K P++ CGDLNV+H EID+ +P
Sbjct: 106 TPNS--QNELKRLPYRMQWEDDFREYLKTLDAKKPVVLCGDLNVAHNEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GF+ ER + +L G D +R+ + D + +S WS
Sbjct: 158 ---------KTNRKNAGFSDEERAKMTELLGSG-FTDTFRYFY--PDAEGIYSWWSYRFK 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYFI S+ + D++ + + GSDHCPV +++
Sbjct: 206 AREKNAGWRIDYFITSKRINDKLKKAAIHTDVL------GSDHCPVEVDI 249
>gi|406672108|ref|ZP_11079342.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
gi|405579418|gb|EKB53524.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
Length = 275
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 122/265 (46%), Gaps = 42/265 (15%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSL----ADSKYAGTALLVKKCFQPKKV 69
QE K TK ++ L +++ F YQ+ W A YAG L KK +
Sbjct: 43 QETKLSTKGPTKKHLEILKE----QFPEYQLAWRSSCEPARKGYAGVMFLYKKSIDAQVT 98
Query: 70 SFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 129
+ AL + +GR++ E E +L N Y PN G E R+ WD++ +++++
Sbjct: 99 YPEIGGPAL-MDCEGRILTLELEDLFLTNVYTPNAG--SELKRLADRQIWDQKYADYLVE 155
Query: 130 C-SGKPLIWCGDLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFG 186
KP+I GD NV+HEEID+++P F+A GFT ER+ F
Sbjct: 156 LDQQKPVIAMGDFNVAHEEIDLANPASNHFSA-----------------GFTDEERQGFS 198
Query: 187 AILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIAC 244
+L+ G D++R LH ++ ++W + K RIDYF+VS L+D+I
Sbjct: 199 RLLERG-FTDSFRHLHGP--VEGQYTWWAQRVKTSKINNSGWRIDYFVVSNRLRDQIKNS 255
Query: 245 EMQGHGIELEGFYGSDHCPVSLELS 269
M G DH P+ LE++
Sbjct: 256 AMIDSGAR------QDHTPILLEMT 274
>gi|336452587|ref|YP_004607053.1| exodeoxyribonuclease III [Helicobacter bizzozeronii CIII-1]
gi|335332614|emb|CCB79341.1| exodeoxyribonuclease III [Helicobacter bizzozeronii CIII-1]
Length = 251
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
F++Y +W+ A K Y+G L K P ++ + +++ +GRV+ E+ FYL+
Sbjct: 48 FEDYASFWNSAQKKGYSGVLTLSKNA--PINTTYGI--GVAQHDLEGRVVTCEYADFYLV 103
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFF 156
N Y PN+ + R KW++ + F+ G K ++ CGDLNV+H+EID+ +PE
Sbjct: 104 NVYVPNS--QRGLLRLDYRLKWEEAFRRFLADLMGHKAVVVCGDLNVAHKEIDLKNPE-- 159
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
+ GF+ ER F +L G LID YR + + + WS
Sbjct: 160 -------------SNHHNAGFSPEERHAFSQLLDLG-LIDTYRHFYPNQQGIYTW-WSYM 204
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R RIDYF+VS L++++ + H + GSDHCPV L++
Sbjct: 205 NEARARNIGWRIDYFLVSHTLQEQLKDALIHPHIL------GSDHCPVGLKI 250
>gi|300362953|ref|ZP_07059123.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353003|gb|EFJ68881.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 268
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 32/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K YAGTA+ K+ K ++ + + + +GR I EF FY ++
Sbjct: 64 YYQYWNYAKRKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFPNFYFIDVQ 119
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
P +G K + F R W + + +V + KP+I GD++V+HE+ID++ P+
Sbjct: 120 VPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDMSVAHEKIDLAEPD----- 172
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
++ GFT ERK F +L G ID +R+ H ++ +S+ +
Sbjct: 173 ----------DNHRHAGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSYREDARA 221
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K G R+DYF+VS L+D+II ++ L GSDHCP+ L+L
Sbjct: 222 KNIG--WRLDYFLVSHNLEDKIINTKI------LNNIMGSDHCPIELDL 262
>gi|170016857|ref|YP_001727776.1| exodeoxyribonuclease III [Leuconostoc citreum KM20]
gi|169803714|gb|ACA82332.1| Exodeoxyribonuclease III [Leuconostoc citreum KM20]
Length = 274
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 33/236 (13%)
Query: 39 FKNYQIWW--SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
F +Y I+ S A S Y+GT +L ++ +P V + + + +GR+I EFE +Y+
Sbjct: 64 FPDYHIYTNSSTARSGYSGTMMLSRQ--EPLSVDYPIINAPGDMDLEGRIITLEFENYYV 121
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 155
Y PN+G + R WD + ++ KP+I+ GD+NV+HEEID+ +P
Sbjct: 122 STVYTPNSG--SGLARLEERGAWDDAYRAYIQALDAQKPVIFSGDMNVAHEEIDLKNP-- 177
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K + GFT ER++F A+L+ G D R + E+ ++W
Sbjct: 178 -------------KTNHNSAGFTDQEREKFSALLRAG-FTDTMRSQYPEQ--TGLYTWWA 221
Query: 216 --NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ K RIDY++VSE L ++ + G+ DH P++LE++
Sbjct: 222 QISKTSKINNSGWRIDYYLVSERLAPKVKTTAVIDTGLR------QDHAPITLEIT 271
>gi|414597004|ref|ZP_11446575.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE E16]
gi|421876607|ref|ZP_16308163.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE C10]
gi|421878297|ref|ZP_16309779.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE C11]
gi|372557684|emb|CCF24283.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE C10]
gi|390447911|emb|CCF25899.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE C11]
gi|390482118|emb|CCF28636.1| Exodeoxyribonuclease III [Leuconostoc citreum LBAE E16]
Length = 274
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 112/236 (47%), Gaps = 33/236 (13%)
Query: 39 FKNYQIWW--SLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
F +Y I+ S A S Y+GT +L ++ +P V + + + +GR+I EFE +Y+
Sbjct: 64 FPDYHIYTNSSTARSGYSGTMMLSRQ--EPLSVDYPIINAPGDMDLEGRIITLEFENYYV 121
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEF 155
Y PN+G + R WD + ++ KP+I+ GD+NV+HEEID+ +P
Sbjct: 122 STVYTPNSG--SGLARLEERGAWDDAYRAYIQALDAQKPVIFSGDMNVAHEEIDLKNP-- 177
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
K + GFT ER++F A+L+ G D R + D ++W
Sbjct: 178 -------------KTNHNSAGFTDQEREKFSALLRAG-FTDTMR--SQYPDQTGLYTWWA 221
Query: 216 --NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ K RIDY++VSE L ++ + G+ DH P++LE++
Sbjct: 222 QISKTSKINNSGWRIDYYLVSERLAPKVKTTAVIDTGLR------QDHAPITLEIT 271
>gi|403374064|gb|EJY86966.1| Exonuclease III [Oxytricha trifallax]
Length = 628
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 34/234 (14%)
Query: 40 KNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
K+Y+ +W+ + SK Y+GT L+ K +P KV+F + +++ +GRVI AEF F L+
Sbjct: 129 KDYEQYWNCSKSKKGYSGTGLITK--IKPIKVTFDI--GIEEHDQEGRVITAEFSKFVLV 184
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPE 154
Y PN+G S+ R ++WDK +++ + + KPLI GDLNV+ E+DV +
Sbjct: 185 AVYVPNSGDDLRRLSY-RTQEWDKAFFDYLDRTRIETNKPLILTGDLNVARNELDVFDTK 243
Query: 155 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWS 214
K+ Y P ERK F + + G ID +R L+ +K FS
Sbjct: 244 --GKDKVACYTP-------------EERKSFESFINRG-YIDTFRHLYPDKREYTYFSAR 287
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
N K K RIDYF+V ++ D + ++ H + + GSDH PV L L
Sbjct: 288 FN--NKVTNKGWRIDYFVVHQD--DINMVTDVTIH----KDYNGSDHVPVCLHL 333
>gi|154688190|ref|YP_001423351.1| ExoA [Bacillus amyloliquefaciens FZB42]
gi|154354041|gb|ABS76120.1| ExoA [Bacillus amyloliquefaciens FZB42]
Length = 252
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 114/230 (49%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K+ +P V + L ++ +GRVI EFE +++N Y
Sbjct: 51 YHAYWNYAVKKGYSGTAVFSKE--KPLHVLYGLGID--DHDQEGRVITLEFEHVFVVNCY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K R +W+ ++++ + KP+I CGDLNV+H EID+ +P
Sbjct: 107 TPNA--KRGLERIDYRLQWEADFKDYLQKLDRKKPVILCGDLNVAHREIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GF+ ER+ F A+L G D++R+L+ D + +S WS
Sbjct: 159 ---------KANRKNAGFSEQEREAFSALLNAG-FTDSFRYLY--PDQEGAYSWWSYRTN 206
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + R+DY IVS+ LK RI + GSDHCPV + +
Sbjct: 207 AREKNIGWRLDYVIVSDRLKQRISQAAI------CADIMGSDHCPVEMTV 250
>gi|29377212|ref|NP_816366.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227554220|ref|ZP_03984267.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|422714823|ref|ZP_16771549.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
gi|422717962|ref|ZP_16774635.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|29344678|gb|AAO82436.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227176667|gb|EEI57639.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|315573773|gb|EFU85964.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|315580287|gb|EFU92478.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
Length = 251
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +WS A+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y
Sbjct: 50 YHQYWSYAEKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + KP+I CGDLNV+H+ ID+ +
Sbjct: 106 TPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + E + + WS
Sbjct: 158 ---------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 207 RKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|379726888|ref|YP_005319073.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
gi|376317791|dbj|BAL61578.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
Length = 254
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W A K Y+G A+ KK Q ++E+ ++ +GR++ E+ FYL+N Y
Sbjct: 50 YHQYWDYAIKKGYSGVAVFAKKAAQKVYYGLNMEE----HDQEGRLLTLEYPNFYLVNCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ ++++++ S KP+I CGDLNV+H+ ID+ +
Sbjct: 106 TPNS--QPELKRLAYRMTWENAFRDYLIKLKSKKPVILCGDLNVAHQPIDLKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
+ + GF+ ER++ +L G ID YR+ + +K+ + WS
Sbjct: 158 ---------RTNQHSAGFSPEEREKMTQLLDNG-FIDTYRYFYPDKEGVYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFIVS+ LK + + GSDHCPV +EL
Sbjct: 207 RKNNAGWRIDYFIVSDNLKPTLKEATIYTE------ITGSDHCPVGVEL 249
>gi|282882297|ref|ZP_06290928.1| exodeoxyribonuclease III [Peptoniphilus lacrimalis 315-B]
gi|281297847|gb|EFA90312.1| exodeoxyribonuclease III [Peptoniphilus lacrimalis 315-B]
Length = 275
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 34/225 (15%)
Query: 49 ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKE 108
A YAGT + KK + K + + +GR++ EF+ FY Y PN G +
Sbjct: 78 ARKSYAGTMIFYKKDLECKATYPEIGAPG-SMDMEGRIVTLEFKDFYFSTVYTPNAG--D 134
Query: 109 EENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP--EFFAAAKLNGYV 165
R+ WDK+ E+ + KPL+ CGD NV+H+EID+++P F+A
Sbjct: 135 GLKRLSDRQVWDKKYLEYCQELDKNKPLVLCGDFNVAHKEIDLANPNNNHFSA------- 187
Query: 166 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRG 223
GFT ER F +L EG +D +R ++ D++ ++W I K
Sbjct: 188 ----------GFTDEERTGFTNLL-EGGFVDTFRLIN--GDVEGKYTWWAQRIKTSKINN 234
Query: 224 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RIDYF+VS+ +KDR+ M G DH P+ LE+
Sbjct: 235 SGWRIDYFLVSQRIKDRVKKSHMMDSGQR------QDHTPIILEI 273
>gi|239631265|ref|ZP_04674296.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239525730|gb|EEQ64731.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 252
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 34/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKH--EPLNVTYGM--GVPEHDTEGRIITLEYPNFYLMTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+G E R++WDK + Q + K PL++CGDLNV+H+EID+ +
Sbjct: 106 TPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKN------- 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
+K + FT ER F L G ID +R L+ + +S WS
Sbjct: 157 --------DKTNHHNASFTDEERADFTKQLDSG-FIDTFRNLYPDT---VTYSWWSYRFH 204
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+ S + K I ++ L GSDHCPV L
Sbjct: 205 ARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDIMGSDHCPVEL 246
>gi|394994125|ref|ZP_10386855.1| ExoA [Bacillus sp. 916]
gi|393805011|gb|EJD66400.1| ExoA [Bacillus sp. 916]
Length = 252
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K Y+GTA+ K+ +P V + L ++ +GRVI EFE +++N Y
Sbjct: 51 YHAYWNYAVKKGYSGTAVFSKE--KPLHVLYGLGID--DHDQEGRVITLEFEHVFVVNCY 106
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN K R +W+ ++++ + KP+I CGDLNV+H EID+ +P
Sbjct: 107 TPNA--KRGLERIDYRLQWEADFKDYLQKLDRKKPVILCGDLNVAHREIDLKNP------ 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER+ F A+L G D++R+L+ +++ + WS
Sbjct: 159 ---------KANRKNAGFSEQEREAFSALLNAG-FTDSFRYLYPDREGAYSW-WSYRTNA 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + R+DY IVS+ LK RI + GSDHCPV + +
Sbjct: 208 REKNIGWRLDYVIVSDRLKQRISQAAI------CADIMGSDHCPVEMTV 250
>gi|268608445|ref|ZP_06142172.1| exodeoxyribonuclease [Ruminococcus flavefaciens FD-1]
Length = 248
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 110/217 (50%), Gaps = 36/217 (16%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GTA+ KK +P V+F + ++ +GRVI E+E FY + Y PN + E
Sbjct: 62 YSGTAVYTKK--EPLSVTFGING---EHTDEGRVITCEYEDFYFVGCYVPNA--QNELKR 114
Query: 113 FQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R +++ ++ ++ + K P+I+CGDLNV+H EID+ +P K +
Sbjct: 115 IDYRMEFEDAMRGYLSELDKKKPVIYCGDLNVAHNEIDLKNP---------------KSN 159
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RID 229
G GF+ ER +F +L G D+YR L+ EK +SW K R K + RID
Sbjct: 160 VGNAGFSDEERGKFTELLAAG-FSDSYRSLYPEK---IEYSWWSYRF-KAREKNIGWRID 214
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
YF+VS+ R+ ++ L GSDHCPV L
Sbjct: 215 YFVVSDRFMPRVKDSQI------LTDVTGSDHCPVQL 245
>gi|295099755|emb|CBK88844.1| exodeoxyribonuclease III [Eubacterium cylindroides T2-87]
Length = 249
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 112/217 (51%), Gaps = 33/217 (15%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GT + K +P V + ++ +++ +GRVI EF+++Y++ Y PN+G +
Sbjct: 63 YSGTMIFSK--IEPLSVHYGIDIP--EHDTEGRVITLEFDSYYVVTVYTPNSG--DGLKR 116
Query: 113 FQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW 172
+ R +WDK ++ Q KP++ GDLNV++EEID+ +P K +
Sbjct: 117 LEYRMEWDKAFSNYI-QSLDKPVLLTGDLNVANEEIDIKNP---------------KTNR 160
Query: 173 GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYF 231
GFT ER F L L D+YR L+ +K +S WS + + RIDY+
Sbjct: 161 RNAGFTDEERDSFKKNLL-TILKDSYRTLYPDK---VEYSWWSYRFKAREKNAGWRIDYW 216
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+VSEEL ++ ++ L YGSDHCPV LE+
Sbjct: 217 LVSEELMPKVKDSKI------LTDIYGSDHCPVQLEI 247
>gi|402835045|ref|ZP_10883630.1| exodeoxyribonuclease III [Selenomonas sp. CM52]
gi|402276400|gb|EJU25510.1| exodeoxyribonuclease III [Selenomonas sp. CM52]
Length = 250
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
Y+ +W+ A+ K Y+GTA+ + +P VS+ L +++ +GRVI EF+ Y +
Sbjct: 47 LTGYKQYWNSAEKKGYSGTAVFSR--IEPLSVSYGLGIE--EHDHEGRVIALEFDDLYFV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ E ++ R W++ ++++L K P++ CGDLNV+H EID+ +P
Sbjct: 103 TVYTPNSQRGLERLAY--RMTWEEAFRDYLLTLDAKKPVVVCGDLNVAHTEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER++ +L+ G D +R L+ +K + WS
Sbjct: 158 ------------KTNRKNAGFTDEEREKMTELLQAG-FTDTFRALYPDKTGIYTW-WSYL 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VS+ L +I + +GSDHCPV L L
Sbjct: 204 RKARETNAGWRIDYFLVSDRLAPKIKEATIHNE------VFGSDHCPVGLVL 249
>gi|449494709|ref|XP_004159624.1| PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox
protein-like [Cucumis sativus]
Length = 501
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 33/228 (14%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+W+ + SK Y+GTA++ + +P V + L + +++ +GRV++ EF++F LLN Y P
Sbjct: 301 YWTCSVSKLGYSGTAIISR--IKPISVRYGLGIS--EHDGEGRVVMVEFDSFXLLNVYVP 356
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N+G + S+ R +WD + ++ + KP+I GDLN +H+EID+ +P
Sbjct: 357 NSGDGLKRLSY-RITQWDPSLSNYIKELEKSKPVILTGDLNCAHQEIDLYNP-------- 407
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGK 220
N++ GFT ER+ F + +D +R H + G++ W G+
Sbjct: 408 ----AGNRK---SAGFTNEERQSFETNFLQKGFVDTFRQKHPDV---VGYTYWGYRHGGR 457
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K R+DYF+VSE + +++ + L GSDHCP+ L L
Sbjct: 458 KTNKGWRLDYFLVSERVAEKVHDSYI------LPDVGGSDHCPIGLVL 499
>gi|300362647|ref|ZP_07058823.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353638|gb|EFJ69510.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 275
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 30/220 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L K P+ V+ + + +GR++ EF+ +Y+ Y PN+G E
Sbjct: 82 YAGTMFLYKNTLTPE-VTKPVIGAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKR 138
Query: 113 FQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R+ WD++ E++ + KP+I GD NV+H ID+ HPE +
Sbjct: 139 LDDRQVWDEKYTEYLQKLDQVKPVIASGDYNVAHTPIDLKHPE---------------NN 183
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRID 229
GFT ER+ F +LK G D +R +H +++ +SW + K RID
Sbjct: 184 HHNAGFTDEERQDFDKLLKLG-FTDTFRKIH--GNVEGVYSWWAQRVRTSKANNSGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
Y+IVS + ++I EM G DHCP+ LE++
Sbjct: 241 YYIVSNRIANQITKSEMLDTGER------KDHCPIMLEIN 274
>gi|291523803|emb|CBK89390.1| exodeoxyribonuclease III [Eubacterium rectale DSM 17629]
Length = 251
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K +P VS+ + +++ +GRVI E++ FYL+ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKN--EPLSVSYGI--GIEEHDKEGRVITLEYDNFYLVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R +W+ +E++ KP++ CGDLNV+H EID+ +P
Sbjct: 106 TPNS--QNELKRLPYRMQWEDDFREYLKALDAQKPVVLCGDLNVAHNEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GF+ ER + +L G D +R+ + D + +S WS
Sbjct: 158 ---------KTNRKNAGFSDEERAKMTELLGSG-FTDTFRYFY--PDAEGIYSWWSYRFK 205
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDYFI S+ + D++ + + GSDHCPV +++
Sbjct: 206 AREKNAGWRIDYFITSKRINDKLKKAAIHTDVL------GSDHCPVEVDI 249
>gi|424779917|ref|ZP_18206803.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422843456|gb|EKU27893.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 253
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 112/235 (47%), Gaps = 35/235 (14%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPK-KVSFSLEKTALKYEPDGRVILAEFETFY 95
P + Y +W+ A+ K Y+GTA+ K QP V + L L +E GR+I E+ FY
Sbjct: 46 PLEGYTQYWNYAEKKGYSGTAIFAK---QPALSVQYGLGIEELDHE--GRLITLEYPEFY 100
Query: 96 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPE 154
L+ Y PN + E R +W+ +E++ Q KP+I CGDLNV+H+ ID+ +
Sbjct: 101 LVTCYTPNA--QSELKRIDFRLQWEAAFREYLHQLDEKKPVIICGDLNVAHQNIDLKNWR 158
Query: 155 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWS 214
PN+ G+ GF+ ER F +L G D +R+L+ E + WS
Sbjct: 159 ------------PNR---GKAGFSDEERNAFTELLNTG-FTDTFRYLYPETTGVYSW-WS 201
Query: 215 GNPIGKYRGKRMRIDYFIVSEEL-KDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VS L KD AC GSDHCPV L L
Sbjct: 202 YRFHARENNAGWRIDYFLVSNRLQKDIQEACIYT-------DILGSDHCPVGLTL 249
>gi|400289764|ref|ZP_10791791.1| putative exodeoxyribonuclease III [Streptococcus ratti FA-1 = DSM
20564]
gi|399920555|gb|EJN93372.1| putative exodeoxyribonuclease III [Streptococcus ratti FA-1 = DSM
20564]
Length = 275
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +Y I W A YAGT + K +P V++ + +GR+I EF+ F
Sbjct: 64 FADYDIAWRSSVEPARKSYAGTIFIYKSELKPT-VTYPNIGAPATMDAEGRIITLEFDHF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + + R+ WD++ ++ KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLRRLEERQIWDEKYAAYLADLDKQKPVLAAGDYNVAHQEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L +G D +R++H D+ +SW
Sbjct: 181 A------------SNRR---SPGFTDEERAGFTNLLAKG-FTDTFRYIH--GDIPDVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S + D+++ EM G DH P+ LE+
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLTSNRIADKVLKSEMIDSGTR------QDHTPILLEI 273
>gi|145511051|ref|XP_001441453.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408703|emb|CAK74056.1| unnamed protein product [Paramecium tetraurelia]
Length = 374
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 110/222 (49%), Gaps = 32/222 (14%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+G A+L K K +S + K++ +GR+I AEFE F L+ Y PN+G K + +
Sbjct: 174 YSGVAILSK----VKPISIKYDMGIEKHDQEGRIITAEFEKFNLVACYVPNSGDKLDRLN 229
Query: 113 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+ R ++WD Q ++ + K I CGDLNVSH EID+++PE NK
Sbjct: 230 Y-RTQEWDVDFQNYLDKLKQTKNTIICGDLNVSHTEIDLANPE------------GNKRS 276
Query: 172 WGQ-----PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 226
GQ FT ER F L +G ID +R LH ++ FS N + K
Sbjct: 277 AGQLIIYDQRFTQEERDSFSKFLSKG-WIDTFRHLHPKEIKYSYFSPRFN--SRETNKGW 333
Query: 227 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RIDYF+V++E +I +++ GSDH P+ ++
Sbjct: 334 RIDYFVVNQEAVGSVIQSDIKT------TILGSDHVPIECDI 369
>gi|306834074|ref|ZP_07467194.1| exodeoxyribonuclease III [Streptococcus bovis ATCC 700338]
gi|304423647|gb|EFM26793.1| exodeoxyribonuclease III [Streptococcus bovis ATCC 700338]
Length = 275
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F Y++ W A YAGT L K P +S+ + +GR+I EF+ F
Sbjct: 64 FPEYEVSWRSSVEPARKGYAGTMFLYKSSLTPS-ISYPEIGAPDTMDSEGRIITLEFDKF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ +++ + KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLAERQIWDEKYADYLTELDQVKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L +G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERAGFTNLLAKG-FTDTFRYIH--GDIPDVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S + D+I EM G DH P+ LE+
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLTSSRIADKITKSEMIDSGAR------QDHTPIVLEI 273
>gi|307108235|gb|EFN56476.1| hypothetical protein CHLNCDRAFT_30910 [Chlorella variabilis]
Length = 371
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 33/242 (13%)
Query: 30 LMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVI 87
+++ L+ P + + + W+ + K Y+GTA++ ++ +S S A +++ +GRVI
Sbjct: 158 VLKELNLP--EGWHVSWNCSRDKKGYSGTAIVSRQ----APLSVSCGIGAEEHDGEGRVI 211
Query: 88 LAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHE 146
AEF FYL+N Y PN+G + + R KWDK ++ + KP++ GDLNV+
Sbjct: 212 TAEFSAFYLVNCYTPNSGEGLKRLGY-RVEKWDKDFSAYLKRLEQHKPVVVTGDLNVAPA 270
Query: 147 EIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKD 206
EID+ P K + GFT ER F A L +D +R + E
Sbjct: 271 EIDIHSP---------------KTNLKSAGFTPQERASFAANLLGQGFVDCFRTQYPEAV 315
Query: 207 MDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ + N G +G R+D+F+VS++L + C L GSDHCP+ L
Sbjct: 316 AYTYWGYRFNARGNNKG--WRLDHFLVSQQLHSSLHDC------YHLPAIMGSDHCPLGL 367
Query: 267 EL 268
L
Sbjct: 368 VL 369
>gi|288905926|ref|YP_003431148.1| 3'-exo-deoxyribonuclease [Streptococcus gallolyticus UCN34]
gi|306831945|ref|ZP_07465100.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325978892|ref|YP_004288608.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|336064803|ref|YP_004559662.1| exodeoxyribonuclease III [Streptococcus pasteurianus ATCC 43144]
gi|386338368|ref|YP_006034537.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732652|emb|CBI14224.1| putative 3'-exo-deoxyribonuclease [Streptococcus gallolyticus
UCN34]
gi|304425871|gb|EFM28988.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325178820|emb|CBZ48864.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334281004|dbj|BAK28578.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|334283003|dbj|BAK30576.1| exodeoxyribonuclease III [Streptococcus pasteurianus ATCC 43144]
Length = 275
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F Y++ W A YAGT L K P +S+ + +GR+I EF+ F
Sbjct: 64 FPEYEVSWRSSVEPARKGYAGTMFLYKSSLTPS-ISYPEIGAPDTMDSEGRIITLEFDKF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WD++ +++ + KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLAERQIWDEKYADYLAELDQVKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER F +L +G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERAGFTNLLAKG-FTDTFRYIH--GDIPDVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S + D+I EM G DH P+ LE+
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLTSSRIADKITKSEMIDSGAR------QDHTPIVLEI 273
>gi|145355749|ref|XP_001422113.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582353|gb|ABP00430.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 273
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 30/228 (13%)
Query: 47 SLADSKYAGTALLVKKCFQPK-KVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 105
S A Y+GTA+ ++ K K + +A ++ +GRV+ AE ++ +++N Y PN+G
Sbjct: 70 STARKGYSGTAMFIRDGDWAKMKRVEATRLSAGGFDDEGRVLTAELDSCFVVNAYVPNSG 129
Query: 106 WKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGDLNVSHEEIDV--SHPEFFAAAKL 161
+ + +R W++ I+E V L+ GK +I+CGDLNV+HEEID+ H E +A
Sbjct: 130 -ADLKRLPERVEVWERAIREHVRALESRGKAVIYCGDLNVAHEEIDLWGRHAENSKSA-- 186
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 221
GFT ER +L+E L+D +R H+ D WS +
Sbjct: 187 --------------GFTPEERAAMTRLLEECDLVDTFR-AHR-PDARAFTYWSYRAGARE 230
Query: 222 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DY + S L D I+ L GSDHCPV L ++
Sbjct: 231 KNRGWRLDYILASRRLADSIV------DAYALPDVLGSDHCPVGLRVA 272
>gi|385267001|ref|ZP_10045088.1| ExoA [Bacillus sp. 5B6]
gi|385151497|gb|EIF15434.1| ExoA [Bacillus sp. 5B6]
Length = 252
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 123/257 (47%), Gaps = 33/257 (12%)
Query: 14 QELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFS 72
QE + D +E K+ + P + Y +W+ A K Y+GTA+ K+ +P V +
Sbjct: 25 QETEADILCLQETKVQDGQVSLQP--EGYHAYWNYAVKKGYSGTAVFSKE--KPLHVFYG 80
Query: 73 LEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 131
L ++ +GRVI EFE +++N Y PN K R +W+ ++++ +
Sbjct: 81 LGID--DHDQEGRVITLEFENVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDR 136
Query: 132 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 191
KP+I CGDLNV+H EID+ +P K + GF+ ER+ F A+L
Sbjct: 137 KKPVILCGDLNVAHREIDLKNP---------------KANRKNAGFSEQEREAFSALLNA 181
Query: 192 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 251
G D +R+L+ +++ + WS + + R+DY IVS+ LK RI
Sbjct: 182 G-FTDTFRYLYPDREGAYSW-WSYRTNAREKNIGWRLDYVIVSDRLKPRI------NQAA 233
Query: 252 ELEGFYGSDHCPVSLEL 268
GSDHCPV + +
Sbjct: 234 ICADIMGSDHCPVEMTV 250
>gi|422731891|ref|ZP_16788239.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
gi|315162099|gb|EFU06116.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
Length = 251
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 106 TPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + E + + WS
Sbjct: 158 ---------KTNQKNAGFTPEERQKFTGLLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 207 RKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|417838206|ref|ZP_12484444.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761749|gb|EGP13018.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 254
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 35/231 (15%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K YAGTA+ K+ K ++ + + + +GR I EF FY +N
Sbjct: 50 YYQYWNYAERKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFSNFYFINVQ 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
P +G K + F R W + + +V + KP+I GD++V+HE ID++ P+
Sbjct: 106 VPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDMSVAHERIDLAEPD----- 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
++ +PGFT ERK F +L G ID +R+ H ++ +S+
Sbjct: 159 ----------DNHHRPGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSYRDK--- 204
Query: 220 KYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ R + + R+DYF+VS L+D++ ++ L GSDHCP+ L++
Sbjct: 205 EARAENLGWRLDYFLVSNNLEDKLTNAKI------LSNIMGSDHCPIELDV 249
>gi|348027153|ref|YP_004766958.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
gi|341823207|emb|CCC74131.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
Length = 254
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 33/230 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y+ +W+ AD K Y+GTA+ + P V + + +++ +GR+I EF +Y + Y
Sbjct: 54 YEQYWNYADRKGYSGTAIFTR--LAPLSVRYGMGID--EHDHEGRLITLEFPDYYFVTCY 109
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R KW+ ++++L KP+I CGDLNV+HEEID+ +P
Sbjct: 110 TPNS--QSELARLPYRMKWEDDFRQYLLDLHQEKPVIVCGDLNVAHEEIDLKNP------ 161
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
K + GF+ ER++ +L G D +R+ + D+ +S WS
Sbjct: 162 ---------KTNRKNAGFSDEERQKMTDLLAAG-FTDTWRYFY--PDVTGVYSWWSYRFK 209
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+ +++L R+ + GSDHCPV LEL
Sbjct: 210 ARQNNAGWRIDYFLTTKDLDSRLAKASI------YTDITGSDHCPVGLEL 253
>gi|330836714|ref|YP_004411355.1| exodeoxyribonuclease III [Sphaerochaeta coccoides DSM 17374]
gi|329748617|gb|AEC01973.1| exodeoxyribonuclease III Xth [Sphaerochaeta coccoides DSM 17374]
Length = 252
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 111/230 (48%), Gaps = 31/230 (13%)
Query: 41 NYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
+Y +W+ A K Y+GTAL K+ +P +V+F + + +GRVI AE+ ++L+
Sbjct: 50 DYHQYWNYAQKKGYSGTALFSKE--KPVRVTFGI--APFIEDAEGRVITAEYPAYFLVCV 105
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN+ + E R KWD + ++L KP+ CGDLNV+H+EID+ +P
Sbjct: 106 YTPNS--QRELLRLDYRMKWDDAFRAYILSLEAMKPVFVCGDLNVAHKEIDLKNP----- 158
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
K + GFT ER +F L G D++R L+ +D WS
Sbjct: 159 ----------KSNVRNAGFTQEERDKFSLFLDAG-FTDSFRHLYPHV-IDRYSWWSYMAN 206
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ + RIDY++ S D+I + H GSDH PV+L L
Sbjct: 207 ARAKNIGWRIDYWLTSNRYADKIHDSLIDDH------IPGSDHAPVALLL 250
>gi|417092680|ref|ZP_11957296.1| exodeoxyribonuclease [Streptococcus suis R61]
gi|353532359|gb|EHC02031.1| exodeoxyribonuclease [Streptococcus suis R61]
Length = 275
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 30/219 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L K P +SF + +GR+I EF+ FY+ Y PN G +
Sbjct: 82 YAGTLFLYKNHLTPI-ISFPEIGAPTTMDSEGRIITLEFDDFYVTQVYTPNAG--DGLKR 138
Query: 113 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R+ WD + E++ Q S KP++ GD NV+H+EID+++P N++
Sbjct: 139 LADRQIWDVQYAEYLSQLDSQKPVLATGDYNVAHKEIDLANP------------ASNRQ- 185
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRID 229
PGFT ER+ F +L +G D +R LH D+ ++W + K RID
Sbjct: 186 --SPGFTDEERQGFTNLLAKG-FTDTFRHLH--GDVLNAYTWWAQRSRTSKINNTGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
Y++VS+ + D++ +M G DH P+ +E+
Sbjct: 241 YWLVSDRIADKVSKSDMIDSGAR------QDHTPIVMEI 273
>gi|420148029|ref|ZP_14655302.1| Exodeoxyribonuclease III [Lactobacillus gasseri CECT 5714]
gi|398400376|gb|EJN53933.1| Exodeoxyribonuclease III [Lactobacillus gasseri CECT 5714]
Length = 275
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 104/220 (47%), Gaps = 30/220 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L K P+ V+ + + +GR++ EF+ +Y+ Y PN+G E
Sbjct: 82 YAGTMFLYKNTLTPE-VTKPVIGAPEPMDHEGRILTLEFDNYYVTQVYTPNSG--NELKR 138
Query: 113 FQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R+ WD++ E++ + KP+I GD NV+H ID+ HPE +
Sbjct: 139 LDDRQVWDEKYTEYLQKLDQVKPVIASGDYNVAHTPIDLKHPE---------------NN 183
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRID 229
GFT ER+ F +LK G D +R +H +++ +SW + K RID
Sbjct: 184 HHNAGFTDEERQDFDKLLKLG-FTDTFRKIH--GNVEGVYSWWAQRVRTSKANNSGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
Y+IVS + +++ EM G DHCP+ LE++
Sbjct: 241 YYIVSNRIANQVTKSEMLDTGER------KDHCPIMLEIN 274
>gi|392595784|gb|EIW85107.1| hypothetical protein CONPUDRAFT_79799 [Coniophora puteana
RWD-64-598 SS2]
Length = 339
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 116/238 (48%), Gaps = 43/238 (18%)
Query: 46 WSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPD-----GRVILAEFETFYLLNT 99
WS+A+ K Y+GTA+L K +P V+ T L PD GR++ EF +++ T
Sbjct: 127 WSIAEKKSYSGTAILSK--HKPLSVT-----TVLPNHPDPSSVKGRLVALEFAGCFVVGT 179
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y N G + + + W+ +++ + G KP+IW GDLNV+ +ID++ P
Sbjct: 180 YVVNAG--QGLKTLDAKNTWNTHFTKYIRELDGRKPVIWVGDLNVAPTDIDLAKP----- 232
Query: 159 AKLNGYVPPNKEDWGQ-PGFTIAERKRFGAIL----KEGRLIDAYRFLHKEKDMDCGFSW 213
K +W + PG+T E F IL K + +D +R LH + FS+
Sbjct: 233 ----------KPNWNKTPGYTKDETDAFKEILNTEGKSAKFVDVWRRLHPKDRHYTYFSY 282
Query: 214 SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271
N + +G R+D F++SE L+ + CE++ E + SDH PV LE+ E
Sbjct: 283 RFN--CREKGLGWRLDMFVLSERLEPHVKMCEIRS-----EIYGASDHVPVVLEIDEV 333
>gi|320547311|ref|ZP_08041602.1| exodeoxyribonuclease [Streptococcus equinus ATCC 9812]
gi|320448009|gb|EFW88761.1| exodeoxyribonuclease [Streptococcus equinus ATCC 9812]
Length = 275
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 107/237 (45%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F +YQ+ W A YAGT L K P +SF + +GR+I EF+ F
Sbjct: 64 FPDYQVSWRSSVEPARKGYAGTMFLYKNHLTPT-ISFPEIGAPDTMDYEGRIITLEFDNF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHP 153
Y+ Y PN G + R+ WD++ +++ + KP++ GD NV+H EID+++P
Sbjct: 123 YVTQVYTPNAG--DGLKRLTERQIWDEKYADYLAELDQTKPVLATGDYNVAHNEIDLANP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ GFT ER F +L +G D +R+LH D+ +SW
Sbjct: 181 N------------SNRR---SAGFTDEERAGFTNLLAKG-FTDTFRYLH--GDIPNVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S + D+I EM G DH P+ LE+
Sbjct: 223 WAQRSKTSKINNTGWRIDYWLASNRIADKITKSEMIDSGTR------QDHTPIVLEI 273
>gi|169347307|ref|ZP_02866245.1| hypothetical protein CLOSPI_00022 [Clostridium spiroforme DSM 1552]
gi|169293924|gb|EDS76057.1| exodeoxyribonuclease III [Clostridium spiroforme DSM 1552]
Length = 252
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 32/218 (14%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GT + K K +S+S +++ +GRVI E+ FYL+N Y PN+ ++
Sbjct: 62 YSGTLVFTK----VKPLSYSYGINIEEHDQEGRVITLEYNKFYLVNCYTPNS--QDGLKR 115
Query: 113 FQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+ R+ W+ ++ KP+I CGDLNV+H+EID+ +P K +
Sbjct: 116 LEYRQVWEDDFLAYLKSLEEKKPVILCGDLNVAHQEIDLKNP---------------KTN 160
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDY 230
GF+ ER + +L G ID +R+L+ D+ +S WS + RIDY
Sbjct: 161 RKNAGFSDEERAKMTQLLNHG-FIDTFRYLY--PDLQGAYSWWSYRFNARKNNAGWRIDY 217
Query: 231 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
FIVS+ LK++I + + GSDHCPV L++
Sbjct: 218 FIVSDCLKEKIKDAYI------FKDIMGSDHCPVGLDI 249
>gi|313114917|ref|ZP_07800415.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
gi|310622794|gb|EFQ06251.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
Length = 250
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 110/218 (50%), Gaps = 33/218 (15%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GTA ++ QP V+ + +++ +GRV+ E+ F+L+N Y PN+ ++
Sbjct: 62 YSGTACWCRE--QPLSVTTGIGIE--QHDHEGRVLTLEYPGFWLVNCYTPNS--QDGLKR 115
Query: 113 FQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R +W+ + ++L K P+I CGDLNV+H EID+ + +K +
Sbjct: 116 LDYRMEWEDAFRAYLLALDAKKPVILCGDLNVAHREIDIKN---------------DKTN 160
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDY 230
GFT ER + +L G D++R LH + + +S WS + + RIDY
Sbjct: 161 HMSAGFTDQERGKMTELLDAG-FADSFRVLHPD---EVKYSWWSYRFHAREKNAGWRIDY 216
Query: 231 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
FIVS + D+I A E+ +GSDHCPV L++
Sbjct: 217 FIVSRRIADKIRAAEIHNE------IFGSDHCPVELDI 248
>gi|225869051|ref|YP_002744999.1| exodeoxyribonuclease [Streptococcus equi subsp. zooepidemicus]
gi|225702327|emb|CAX00133.1| exodeoxyribonuclease [Streptococcus equi subsp. zooepidemicus]
Length = 275
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L KK P V+F + +GR+I EF+ F++ Y PN G +
Sbjct: 82 YAGTMFLYKKELNPI-VTFPDIGAPTTMDAEGRIITLEFDDFFVTQVYTPNAG--DGLRR 138
Query: 113 FQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+ R+ WD++ +++ Q KP++ GD NV+H+EID+++P +
Sbjct: 139 LEERQLWDQKYADYLAQLDAQKPVLATGDYNVAHKEIDLANP---------------ASN 183
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRID 229
PGFT ER F +L G D +RF+H D+ +SW + K RID
Sbjct: 184 HRSPGFTDEERLGFTNLLNRG-FTDTFRFIH--GDIPNVYSWWAQRSKTSKLNNTGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
Y++ S L D++ EM G DH P+ LE+
Sbjct: 241 YWLTSNRLIDKVSRSEMISSGER------QDHTPILLEI 273
>gi|452820422|gb|EME27464.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 307
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 28/230 (12%)
Query: 42 YQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT 99
Y+ +++ ++K Y+GTAL K P V E ++ GR+I+AE+E FY+ +
Sbjct: 100 YKKFFNCCETKRGYSGTALFSK--MAPIAVLKDFEGVYSEHNKTGRLIVAEYENFYVASV 157
Query: 100 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAA 158
Y PN+G K + + R WD ++ + KP++ GDLNV+H++IDV PE +
Sbjct: 158 YVPNSGDKLKNLEY-RVHSWDPSFCSYICELQMKKPIVLLGDLNVAHQDIDVYAPERLGS 216
Query: 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI 218
+ GF +ER F L+E +++D++R+L+ + F W
Sbjct: 217 ---------------KAGFVQSERNNFSKFLEETKMVDSFRYLYPHRKEAYSF-WDYKTG 260
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
G+ R + RIDY ++S L L+ GSDHCP+ +++
Sbjct: 261 GRLRNQGWRIDYCLLSSSLV------SNLVDAFILDKIEGSDHCPIGIQM 304
>gi|422696461|ref|ZP_16754419.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
gi|315174931|gb|EFU18948.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
Length = 251
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA++ K+ + V + L A ++ +GRVI E+ F+++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIVAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 106 TPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + E + + WS
Sbjct: 158 ---------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 207 RKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|257420126|ref|ZP_05597120.1| exonuclease III [Enterococcus faecalis T11]
gi|257161954|gb|EEU91914.1| exonuclease III [Enterococcus faecalis T11]
Length = 251
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKE--EALSVRYGLGVEA--HDQEGRVITLEYPEFFMVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 106 TPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + E + + WS
Sbjct: 158 ---------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 207 RKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|195977651|ref|YP_002122895.1| exodeoxyribonuclease ExoA [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|414563453|ref|YP_006042414.1| exodeoxyribonuclease ExoA [Streptococcus equi subsp. zooepidemicus
ATCC 35246]
gi|195974356|gb|ACG61882.1| exodeoxyribonuclease ExoA [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|338846518|gb|AEJ24730.1| exodeoxyribonuclease ExoA [Streptococcus equi subsp. zooepidemicus
ATCC 35246]
Length = 275
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L KK P V+F + +GR+I EF+ F++ Y PN G +
Sbjct: 82 YAGTMFLYKKELNPI-VTFPDIGAPTTMDAEGRIITLEFDDFFVTQVYTPNAG--DGLRR 138
Query: 113 FQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+ R+ WD++ +++ Q KP++ GD NV+H+EID+++P +
Sbjct: 139 LEERQLWDQKYADYLAQLDAQKPVLATGDYNVAHKEIDLANP---------------ASN 183
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRID 229
PGFT ER F +L G D +RF+H D+ +SW + K RID
Sbjct: 184 HRSPGFTDEERLGFTNLLNRG-FTDTFRFIH--GDIPNVYSWWAQRSKTSKLNNTGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
Y++ S L D++ EM G DH P+ LE+
Sbjct: 241 YWLTSNRLIDKVSRSEMISSGER------QDHTPILLEI 273
>gi|256961018|ref|ZP_05565189.1| exonuclease III [Enterococcus faecalis Merz96]
gi|293384592|ref|ZP_06630458.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|293386821|ref|ZP_06631392.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|312906418|ref|ZP_07765426.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|312979423|ref|ZP_07791111.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|422701088|ref|ZP_16758929.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
gi|256951514|gb|EEU68146.1| exonuclease III [Enterococcus faecalis Merz96]
gi|291078138|gb|EFE15502.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|291083824|gb|EFE20787.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|310627572|gb|EFQ10855.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|311287794|gb|EFQ66350.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|315170467|gb|EFU14484.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
Length = 251
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKE--EALSVRYGLGVEA--HDQEGRVITLEYPEFFMVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 106 TPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + E + + WS
Sbjct: 158 ---------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 207 RKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|260887970|ref|ZP_05899233.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|330838548|ref|YP_004413128.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|260862221|gb|EEX76721.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|329746312|gb|AEB99668.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
Length = 250
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 31/232 (13%)
Query: 39 FKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLL 97
Y+ +W+ A+ K Y+GTA+ + +P VS+ L +++ +GRVI EF+ Y +
Sbjct: 47 LTGYKQYWNSAEKKGYSGTAVFSR--IEPLSVSYGLGIE--EHDHEGRVIALEFDDLYFV 102
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFF 156
Y PN+ E ++ R W++ ++++L K P++ CGDLNV+H EID+ +P
Sbjct: 103 TVYTPNSQRGLERLAY--RMTWEEAFRDYLLALDAKKPVVVCGDLNVAHTEIDLKNP--- 157
Query: 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN 216
K + GFT ER++ +L G D +R L+ +K + WS
Sbjct: 158 ------------KTNRKNAGFTDEEREKMTELLAAG-FTDTFRALYPDKTGIYTW-WSYL 203
Query: 217 PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VS+ L +I + +GSDHCPV L L
Sbjct: 204 RKARETNAGWRIDYFLVSDRLAPKIKEATIHNE------VFGSDHCPVGLVL 249
>gi|237733965|ref|ZP_04564446.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229383046|gb|EEO33137.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 251
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y + + A+ K Y+GT + K+ K +++S +++ +GRV+ E+E FYL+N Y
Sbjct: 50 YYTYMNSAEKKGYSGTLVFSKE----KPLNYSYGIGIEEHDHEGRVVTLEYEKFYLVNCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W++ ++ KP+I CGDLNV+H+EID+ +P
Sbjct: 106 TPNS--QNELKRLDYRMHWEEDFLAYLKSLEKSKPVILCGDLNVAHQEIDLKNP------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GF+ ER + +L+ G ID YR+L+ +++ + WS
Sbjct: 158 ---------KTNRKNAGFSDEERAKMTNLLENG-FIDTYRYLYPDQEGVYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYFIVS+ LK+ I GSDHCPV LE+
Sbjct: 207 RKNNAGWRIDYFIVSDCLKEGI------KEAFICTDILGSDHCPVGLEI 249
>gi|366086404|ref|ZP_09452889.1| exodeoxyribonuclease III [Lactobacillus zeae KCTC 3804]
Length = 252
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 34/228 (14%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +++ A+ K Y+GTA+ K +P V++ + +++ +GR+I E+ FYL+ Y
Sbjct: 50 YYQYFNYAERKGYSGTAIFTKH--EPLNVTYGM--GIPEHDKEGRIITLEYPKFYLMTVY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+G E R++WDK + + Q + KPL++CGDLNV+HE ID+ +
Sbjct: 106 TPNSG--GELKRLDYRQQWDKDFRAYTNQLAEKKPLVYCGDLNVAHEPIDLKN------- 156
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPI 218
+K + GFT ER F LK G ID +R L+ +S WS
Sbjct: 157 --------DKTNHHNAGFTDEERADFTKQLKSG-FIDTFRHLYPNT---VTYSWWSYRFH 204
Query: 219 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
+ RIDYF+ S + + ++ L GSDHCPV L
Sbjct: 205 ARANNAGWRIDYFVASSNFQPYVKDAKI------LTDVMGSDHCPVEL 246
>gi|257867352|ref|ZP_05647005.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257873685|ref|ZP_05653338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
gi|257801408|gb|EEV30338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257807849|gb|EEV36671.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
Length = 252
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 31/230 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ + +E+ ++ +GRVI E+ F+L+ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEPALSVRYGLGIEE----HDTEGRVITLEYPEFFLITCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ ++ + KP+I CGDLNV+H+ ID+ +
Sbjct: 106 TPNS--QNELRRLDYRMTWEDAFLAYLTELKQQKPVILCGDLNVAHKNIDIKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + + + + WS
Sbjct: 158 ---------KTNQKSAGFTPEEREKFSTLLAAG-FTDTFRYFYPDAEGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ RIDYF+VS++L + ++ ++ I GSDHCPV L+L+
Sbjct: 207 RKNNAGWRIDYFVVSDDLNESLLDAKIHTDII------GSDHCPVELDLN 250
>gi|311110171|ref|ZP_07711568.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|311065325|gb|EFQ45665.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 265
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 32/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K YAGTA+ K+ K ++ + + + +GR I EF FY ++
Sbjct: 61 YYQYWNYAKRKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFSNFYFIDVQ 116
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
P +G K + F R W + + +V + KP+I GD++V+H++ID++ P+
Sbjct: 117 VPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDMSVAHDKIDLAEPD----- 169
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
++ GFT ERK F +L G ID +R+ H ++ +S+ +
Sbjct: 170 ----------DNHRHAGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSYREDARA 218
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K G R+DYF+VS L+D++I ++ L GSDHCP+ L+L
Sbjct: 219 KNIG--WRLDYFLVSNNLEDKMINAQI------LNNIMGSDHCPIELDL 259
>gi|229544881|ref|ZP_04433606.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256963841|ref|ZP_05568012.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|257081702|ref|ZP_05576063.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|257087702|ref|ZP_05582063.1| exonuclease III [Enterococcus faecalis D6]
gi|257416904|ref|ZP_05593898.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257421653|ref|ZP_05598643.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|307271787|ref|ZP_07553058.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|307278718|ref|ZP_07559785.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|307288645|ref|ZP_07568626.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|384514063|ref|YP_005709156.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|422703204|ref|ZP_16761029.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|422707239|ref|ZP_16764936.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|422720136|ref|ZP_16776759.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|422724491|ref|ZP_16780967.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|422734487|ref|ZP_16790776.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|422741447|ref|ZP_16795472.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|424672083|ref|ZP_18109064.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
gi|229309982|gb|EEN75969.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256954337|gb|EEU70969.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|256989732|gb|EEU77034.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|256995732|gb|EEU83034.1| exonuclease III [Enterococcus faecalis D6]
gi|257158732|gb|EEU88692.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257163477|gb|EEU93437.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|295113675|emb|CBL32312.1| exodeoxyribonuclease III [Enterococcus sp. 7L76]
gi|306500399|gb|EFM69735.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|306504579|gb|EFM73782.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|306511665|gb|EFM80664.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|315025498|gb|EFT37430.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|315032586|gb|EFT44518.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|315143871|gb|EFT87887.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|315155597|gb|EFT99613.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|315165304|gb|EFU09321.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|315168718|gb|EFU12735.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|327535952|gb|AEA94786.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|402357128|gb|EJU91842.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
Length = 251
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 106 TPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + E + + WS
Sbjct: 158 ---------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 207 RKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|238855799|ref|ZP_04646091.1| exodeoxyribonuclease III [Lactobacillus jensenii 269-3]
gi|260665239|ref|ZP_05866088.1| exodeoxyribonuclease III [Lactobacillus jensenii SJ-7A-US]
gi|238831575|gb|EEQ23920.1| exodeoxyribonuclease III [Lactobacillus jensenii 269-3]
gi|260560976|gb|EEX26951.1| exodeoxyribonuclease III [Lactobacillus jensenii SJ-7A-US]
Length = 275
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 103/219 (47%), Gaps = 30/219 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L KK +P+ VS+ + +GR+I EF +++ Y PN G E
Sbjct: 82 YAGTMYLYKKSLKPE-VSYPKIGAPDTMDFEGRIITLEFPEYFVTQVYTPNAG--GELKR 138
Query: 113 FQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R+ WDK+ E++ + KP++ GD NV+HEEID+ HPE +
Sbjct: 139 LSDRQGWDKKYIEYLQELDVQKPVLASGDYNVAHEEIDLKHPE---------------NN 183
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRID 229
GFT ER F +L G D++R +H ++ +SW I K RID
Sbjct: 184 HHSAGFTDEERADFTELLAAG-FTDSFRKIH--GNIPEVYSWWAQRIRTAKANNSGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
Y++ S + D+I EM G +DHCP+ LE+
Sbjct: 241 YWLTSNRIADKIKKSEMMDTGER------ADHCPIVLEI 273
>gi|116630243|ref|YP_815415.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|420148175|ref|ZP_14655447.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
gi|116095825|gb|ABJ60977.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|398400333|gb|EJN53898.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
Length = 268
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 32/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K YAGTA+ K+ K ++ + + + +GR I EF FY ++
Sbjct: 64 YYQYWNYAKRKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFSNFYFIDVQ 119
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
P +G K + F R W + + +V + KP+I GD++V+H++ID++ P+
Sbjct: 120 VPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDMSVAHDKIDLAEPD----- 172
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
++ GFT ERK F +L G ID +R+ H ++ +S+ +
Sbjct: 173 ----------DNHRHAGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSYREDARA 221
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K G R+DYF+VS L+D++I ++ L GSDHCP+ L+L
Sbjct: 222 KNIG--WRLDYFLVSNNLEDKMINAQI------LNNIMGSDHCPIELDL 262
>gi|255974862|ref|ZP_05425448.1| exonuclease III [Enterococcus faecalis T2]
gi|255967734|gb|EET98356.1| exonuclease III [Enterococcus faecalis T2]
Length = 257
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y
Sbjct: 56 YHQYWNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCY 111
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 112 TPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW------ 163
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + E + + WS
Sbjct: 164 ---------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNA 212
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 213 RKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 255
>gi|282852873|ref|ZP_06262214.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|282555981|gb|EFB61602.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
Length = 254
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 32/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A K YAGTA+ K+ K ++ + + + +GR I EF FY ++
Sbjct: 50 YYQYWNYAKRKGYAGTAVFTKE----KPITVANGFGVPEVDGEGRSITLEFSNFYFIDVQ 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
P +G K + F R W + + +V + KP+I GD++V+H++ID++ P+
Sbjct: 106 VPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDMSVAHDKIDLAEPD----- 158
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
++ GFT ERK F +L G ID +R+ H ++ +S+ +
Sbjct: 159 ----------DNHRHAGFTGIERKEFSELLNAG-FIDTFRYFHPDEAKYTYWSYREDARA 207
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
K G R+DYF+VS L+D++I ++ L GSDHCP+ L+L
Sbjct: 208 KNIG--WRLDYFLVSNNLEDKMINAQI------LNNIMGSDHCPIELDL 248
>gi|257437815|ref|ZP_05613570.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
gi|257199738|gb|EEU98022.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
Length = 263
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 33/218 (15%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+GTA K P V+ + + +++ +GRV+ E+ FYL+N Y PN+ ++
Sbjct: 75 YSGTACWCKTA--PLAVTTGIGRE--EHDHEGRVLTLEYPGFYLVNCYTPNS--QDGLKR 128
Query: 113 FQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
R W+ + ++L+ K P+I CGDLNV+H EID+ + AK N
Sbjct: 129 LDYRMTWEDAFRAYLLELDAKKPVILCGDLNVAHTEIDIKN------AKTNRM------- 175
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDY 230
GFT ER + +L G D +R +H + + +S WS + + RIDY
Sbjct: 176 --SAGFTDQERAKMTELLAAG-FTDTFRAVHPD---EVKYSWWSYRFHAREKNAGWRIDY 229
Query: 231 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
FIVS + D++ A E+ +GSDHCPV L +
Sbjct: 230 FIVSNRIADKVTAAEIHNE------VFGSDHCPVELVI 261
>gi|255971866|ref|ZP_05422452.1| exonuclease III [Enterococcus faecalis T1]
gi|255962884|gb|EET95360.1| exonuclease III [Enterococcus faecalis T1]
Length = 257
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y
Sbjct: 56 YHQYWNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCY 111
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + KP+I CGDLNV+H+ ID+ +
Sbjct: 112 TPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNW------ 163
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + E + + WS
Sbjct: 164 ---------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNA 212
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 213 RKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 255
>gi|357635898|ref|ZP_09133773.1| exodeoxyribonuclease III [Streptococcus macacae NCTC 11558]
gi|357584352|gb|EHJ51555.1| exodeoxyribonuclease III [Streptococcus macacae NCTC 11558]
Length = 276
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 34/237 (14%)
Query: 39 FKNYQIWWSL----ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETF 94
F NY+ W A YAGT L K P ++ + +GR+I EF+ F
Sbjct: 64 FPNYKSTWRSSVEPARKGYAGTMFLYKSNLNPM-ITCPEINAPTTMDAEGRIITLEFDKF 122
Query: 95 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHP 153
++ Y PN G + R+ WDK+ +++ KP++ GD NV+H+EID++HP
Sbjct: 123 FVTQVYTPNAG--DGLKRLDDRQIWDKKYADYLENLDKQKPVLATGDYNVAHKEIDLAHP 180
Query: 154 EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 213
N+ PGFT ER+ F +L +G D +R++H D+ +SW
Sbjct: 181 S------------SNRR---SPGFTDEERQGFTNLLDKG-FTDTFRYIH--GDIPEVYSW 222
Query: 214 --SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K RIDY++ S L D+I+ EM G DH P+ LE+
Sbjct: 223 WAQRSKTSKINNSGWRIDYWLTSNRLADKILKSEMIDSGSR------QDHTPILLEI 273
>gi|312900096|ref|ZP_07759412.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
gi|311292731|gb|EFQ71287.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
Length = 251
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 106 TPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + E + + WS
Sbjct: 158 ---------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 207 RKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|300860584|ref|ZP_07106671.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|428767881|ref|YP_007153992.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|300849623|gb|EFK77373.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|427186054|emb|CCO73278.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
Length = 251
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + KP+I CGDLNV+H+ ID+ +
Sbjct: 106 TPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + E + + WS
Sbjct: 158 ---------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 207 RKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|15899057|ref|NP_343662.1| exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|284175276|ref|ZP_06389245.1| exodeoxyribonuclease [Sulfolobus solfataricus 98/2]
gi|384432650|ref|YP_005642008.1| exodeoxyribonuclease III Xth [Sulfolobus solfataricus 98/2]
gi|13815592|gb|AAK42452.1| Exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|261600804|gb|ACX90407.1| exodeoxyribonuclease III Xth [Sulfolobus solfataricus 98/2]
Length = 247
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 109/218 (50%), Gaps = 33/218 (15%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
Y+G L K +P KV L+ +++ +GR + E + FYL+N Y P G E
Sbjct: 62 YSGVMTLTK--IKPIKVIKGLQIK--EFDDEGRTVSLELKDFYLINAYFPRAGDNLERLD 117
Query: 113 FQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
F + K++ I+ F+L+ KP+I CGD N++H+ ID + F+ K+
Sbjct: 118 F--KLKFNNGIENFLLKLREVKPVILCGDFNIAHQSIDAA----FSDPKI---------- 161
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231
PG T ER F +L G ID +R+LH +S+ GN K G +R+DY
Sbjct: 162 ---PGLTPQERAWFTHLLSLG-FIDTFRYLHPNVRKYSWWSYMGNAREKNLG--LRLDYC 215
Query: 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
IVSEELKD I ++ L GSDH P+ LEL+
Sbjct: 216 IVSEELKDSIKMADI------LTDVQGSDHAPIILELT 247
>gi|256616763|ref|ZP_05473609.1| exonuclease III [Enterococcus faecalis ATCC 4200]
gi|256596290|gb|EEU15466.1| exonuclease III [Enterococcus faecalis ATCC 4200]
Length = 251
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCY 105
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 106 TPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW------ 157
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + E + + WS
Sbjct: 158 ---------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNA 206
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 207 RKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 249
>gi|430362273|ref|ZP_19427003.1| exonuclease III [Enterococcus faecalis OG1X]
gi|430366851|ref|ZP_19427621.1| exonuclease III [Enterococcus faecalis M7]
gi|429512184|gb|ELA01799.1| exonuclease III [Enterococcus faecalis OG1X]
gi|429516857|gb|ELA06332.1| exonuclease III [Enterococcus faecalis M7]
Length = 271
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ + V + L A ++ +GRVI E+ F+++ Y
Sbjct: 70 YHQYWNYAEKKGYSGTAIFAKE--EALSVRYGLGIEA--HDQEGRVITLEYPEFFMVTCY 125
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 126 TPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW------ 177
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + E + + WS
Sbjct: 178 ---------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNA 226
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 227 RKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 269
>gi|256763359|ref|ZP_05503939.1| exonuclease III [Enterococcus faecalis T3]
gi|256684610|gb|EEU24305.1| exonuclease III [Enterococcus faecalis T3]
Length = 257
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 31/229 (13%)
Query: 42 YQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTY 100
Y +W+ A+ K Y+GTA+ K+ + +E ++ +GRVI E+ F+++ Y
Sbjct: 56 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIES----HDQEGRVITLEYPEFFMVTCY 111
Query: 101 APNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAA 159
PN+ + E R W+ + ++ + + KP+I CGDLNV+H++ID+ +
Sbjct: 112 TPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNW------ 163
Query: 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
K + GFT ER++F +L G D +R+ + E + + WS
Sbjct: 164 ---------KTNQKNAGFTPEERQKFTELLDSG-FTDTFRYFYPEAEGIYSW-WSYRFNA 212
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ RIDYF+VSE L +R+++ ++ + GSDHCPV + L
Sbjct: 213 RKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------GSDHCPVEVVL 255
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,797,703,556
Number of Sequences: 23463169
Number of extensions: 208352362
Number of successful extensions: 409422
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 3088
Number of HSP's that attempted gapping in prelim test: 401695
Number of HSP's gapped (non-prelim): 3989
length of query: 285
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 144
effective length of database: 9,050,888,538
effective search space: 1303327949472
effective search space used: 1303327949472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)