BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023207
(285 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium
discoideum GN=apeA PE=2 SV=2
Length = 361
Score = 120 bits (302), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 28/229 (12%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
K Y+ + AD K + GT +L KK +P ++F + K++ +GRVI E++ FY++N
Sbjct: 154 KGYEYHFIEADQKGHHGTGVLTKK--KPNAITFGI--GIAKHDNEGRVITLEYDQFYIVN 209
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFA 157
TY PN G + + R ++WD Q ++ + + KP+IWCGDLNV+H EID+ +P
Sbjct: 210 TYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNP---- 265
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
K + GFTI ER F L++G +D+YR + K+ F WS
Sbjct: 266 -----------KTNKKSAGFTIEERTSFSNFLEKG-YVDSYRHFNPGKEGSYTF-WSYLG 312
Query: 218 IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
G+ + R+DYF+VS+ L D I + GSDHCP+ +
Sbjct: 313 GGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSV-----MGSDHCPIGV 356
>sp|P28352|APEX1_MOUSE DNA-(apurinic or apyrimidinic site) lyase OS=Mus musculus GN=Apex1
PE=1 SV=2
Length = 317
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P +Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE+F L
Sbjct: 111 PGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFESFVL 166
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 167 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKG 224
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 225 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTY 268
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 269 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus
GN=Apex1 PE=1 SV=2
Length = 317
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 129/238 (54%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P +Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEFE
Sbjct: 107 LQELPGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFE 162
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVS 151
+F L+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+
Sbjct: 163 SFILVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLR 220
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L D++R L+ F
Sbjct: 221 NPKG------------NKKN---AGFTPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTF 265
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 266 -WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>sp|A2T7I6|APEX1_PONPY DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus
GN=APEX1 PE=3 SV=1
Length = 318
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 129/238 (54%), Gaps = 30/238 (12%)
Query: 34 LSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE 92
L P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF+
Sbjct: 108 LQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFD 163
Query: 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVS 151
+F L+ Y PN G + R++WD+ + F+ S KPL+ CGDLNV+HEEID+
Sbjct: 164 SFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLR 221
Query: 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
+P+ NK++ GFT ER+ FG +L+ L D++R L+ F
Sbjct: 222 NPKG------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF 266
Query: 212 SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
W+ + + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 267 -WTYMMNARSKNVGWRLDYFLLSHSLLTALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|A2T6Y4|APEX1_PANTR DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes
GN=APEX1 PE=3 SV=1
Length = 318
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 129/234 (55%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|A1YFZ3|APEX1_PANPA DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1
PE=3 SV=1
Length = 318
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 129/234 (55%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1
PE=1 SV=2
Length = 318
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 30/234 (12%)
Query: 38 PFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYL 96
P ++Q W + +D + Y+G LL ++C P KVS+ + +++ +GRVI+AEF++F L
Sbjct: 112 PGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE--EHDQEGRVIVAEFDSFVL 167
Query: 97 LNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEF 155
+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 168 VTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 215
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 226 ------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTY 269
Query: 216 NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 270 MMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|A1YES6|APEX1_GORGO DNA-(apurinic or apyrimidinic site) lyase OS=Gorilla gorilla
gorilla GN=APEX1 PE=3 SV=1
Length = 318
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 127/235 (54%), Gaps = 32/235 (13%)
Query: 38 PFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFY 95
P +YQ +WS K Y+G LL ++C P KVS+ + + +++ +GRVI+AEF++F
Sbjct: 112 PGLSYQ-YWSAPXXKEGYSGVGLLSRQC--PLKVSYGIGEE--EHDQEGRVIVAEFDSFV 166
Query: 96 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPE 154
L+ Y PN G + R++WD+ + F+ S KPL+ CGDLNV+HEEID+ +P+
Sbjct: 167 LVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPK 224
Query: 155 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWS 214
NK++ GFT ER+ FG +L+ L D++R L+ F W+
Sbjct: 225 G------------NKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WT 268
Query: 215 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 269 YMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYLA 317
>sp|P23196|APEX1_BOVIN DNA-(apurinic or apyrimidinic site) lyase OS=Bos taurus GN=APEX1
PE=1 SV=2
Length = 318
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 138/253 (54%), Gaps = 33/253 (13%)
Query: 19 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 77
+TK S + + ++ LS ++Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCSENKLPVELQELSG---LSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 149
Query: 78 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 136
+++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLV 206
Query: 137 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 196
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D
Sbjct: 207 LCGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTD 251
Query: 197 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 256
++R L+ F W+ + + R+DYF++S+ + + +++ +
Sbjct: 252 SFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSVLPALCDSKIRSKAL----- 305
Query: 257 YGSDHCPVSLELS 269
GSDHCP++L L+
Sbjct: 306 -GSDHCPITLYLA 317
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP
PE=2 SV=2
Length = 536
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 35/229 (15%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALK-YEPDGRVILAEFETFYLLNTYA 101
+WS + SK Y+GTA++ + +P V + T L ++ +GR++ AEF++FYL+NTY
Sbjct: 336 FWSCSVSKLGYSGTAIISR--IKPLSVRYG---TGLSGHDTEGRIVTAEFDSFYLINTYV 390
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+G + S+ R +WD+ + + + KP++ GDLN +HEEID+ +P
Sbjct: 391 PNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNP------- 442
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIG 219
NK GFTI ER+ FGA L + +D +R K+ G++ W G
Sbjct: 443 -----AGNKRS---AGFTIEERQSFGANLLDKGFVDTFR---KQHPGVVGYTYWGYRHGG 491
Query: 220 KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
+ K R+DYF+VS+ IA + I L GSDHCP+ L L
Sbjct: 492 RKTNKGWRLDYFLVSQS-----IAANVHDSYI-LPDINGSDHCPIGLIL 534
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1
SV=1
Length = 252
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 33/233 (14%)
Query: 40 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 98
++Y ++W+ A K Y+GTA+ K+ +P +V + + +++ +GRVI EFE +++
Sbjct: 49 EDYHVYWNYAVKKGYSGTAVFSKQ--EPLQVIYGI--GVEEHDQEGRVITLEFENVFVMT 104
Query: 99 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFA 157
Y PN+ E + R +W++ + ++L+ K P+I CGDLNV+H+EID+ +P
Sbjct: 105 VYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNP---- 158
Query: 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP 217
K + GF+ ER+ F L+ G +D++R H D++ +SW
Sbjct: 159 -----------KANRNNAGFSDQEREAFTRFLEAG-FVDSFR--HVYPDLEGAYSWWSYR 204
Query: 218 IG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
G + R RIDYF+VSE LK++I + + GSDHCPV L ++
Sbjct: 205 AGARDRNIGWRIDYFVVSESLKEQIEDASISADVM------GSDHCPVELIIN 251
>sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1
PE=1 SV=2
Length = 679
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 30/226 (13%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 101
Y +W YAG A+ K P V + + +++ GR+I AE+E FYL+N Y
Sbjct: 479 YHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EFDDVGRMITAEYEKFYLINVYV 534
Query: 102 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAK 160
PN+G K + + R +W+K Q +V + KP++ CGD+NVSH ID+ +P
Sbjct: 535 PNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENP------- 585
Query: 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220
K + GFT ER + +L G +D +R L+ ++ F W+ +
Sbjct: 586 --------KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLYPDRKGAYTF-WTYMANAR 635
Query: 221 YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSL 266
R R+DY +VSE +++ E++ + GSDHCP+++
Sbjct: 636 ARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GSDHCPITI 675
>sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1
PE=1 SV=1
Length = 310
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 32/228 (14%)
Query: 45 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAP 102
+W+ ++ K Y+G A+L K +P V++ + K +++ +GRVI AEF F+L+ Y P
Sbjct: 111 YWAGSEDKEGYSGVAMLCKT--EPLNVTYGIGKE--EHDKEGRVITAEFPDFFLVTAYVP 166
Query: 103 NNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161
N R+ WD + ++ KPL+ CGDLNV+H+EID+ +P
Sbjct: 167 NA--SRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNP-------- 216
Query: 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY 221
K + GFT ER+ F +L+ G D++R L+ ++ F W+ +
Sbjct: 217 -------KGNRKNAGFTPEEREGFTQLLEAG-FTDSFRELYPDQAYAYTF-WTYMMNARS 267
Query: 222 RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269
+ R+DYF++S L + +++ + GSDHCP++L L+
Sbjct: 268 KNVGWRLDYFVLSSALLPGLCDSKIRNTAM------GSDHCPITLFLA 309
>sp|P0A2X4|EXOA_STRR6 Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=exoA PE=3 SV=1
Length = 275
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 30/219 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L KK P +SF + +GR+I EF+ F++ Y PN G +
Sbjct: 82 YAGTMFLYKKELTPT-ISFPEIGAPSTMDLEGRIITLEFDAFFVTQVYTPNAG--DGLKR 138
Query: 113 FQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+ R+ WD + E++ + KP++ GD NV+H EID+++P N+
Sbjct: 139 LEERQVWDAKYAEYLAELDKEKPVLATGDYNVAHNEIDLANP------------ASNRR- 185
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRID 229
PGFT ER F +L G D +R +H D+ ++W + K RID
Sbjct: 186 --SPGFTDEERAGFTNLLATG-FTDTFRHVH--GDVPERYTWWAQRSKTSKINNTGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
Y++ S + D++ +M G DH P+ LE+
Sbjct: 241 YWLTSNRIADKVTKSDMIDSGAR------QDHTPIVLEI 273
>sp|P0A2X3|EXOA_STRPN Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1
Length = 275
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 30/219 (13%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 112
YAGT L KK P +SF + +GR+I EF+ F++ Y PN G +
Sbjct: 82 YAGTMFLYKKELTPT-ISFPEIGAPSTMDLEGRIITLEFDAFFVTQVYTPNAG--DGLKR 138
Query: 113 FQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 171
+ R+ WD + E++ + KP++ GD NV+H EID+++P N+
Sbjct: 139 LEERQVWDAKYAEYLAELDKEKPVLATGDYNVAHNEIDLANP------------ASNRR- 185
Query: 172 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRID 229
PGFT ER F +L G D +R +H D+ ++W + K RID
Sbjct: 186 --SPGFTDEERAGFTNLLATG-FTDTFRHVH--GDVPERYTWWAQRSKTSKINNTGWRID 240
Query: 230 YFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
Y++ S + D++ +M G DH P+ LE+
Sbjct: 241 YWLTSNRIADKVTKSDMIDSGAR------QDHTPIVLEI 273
>sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1
SV=1
Length = 520
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 43/223 (19%)
Query: 74 EKTALKYEPDGRVILAEFET-FYLLNTYAPNNGWKEEENSFQRRRKWD---KRIQEFVLQ 129
EK+AL+ + +GR ++ E +++ Y P N EE R R +R++ L
Sbjct: 154 EKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGEMFRLRFLKVLLRRVRN--LD 211
Query: 130 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP-----------GFT 178
GK ++ GD+NV + ID +A L + P + G F
Sbjct: 212 KIGKKIVLMGDVNVCRDLID-------SADTLEQFSIPITDPMGGTKLEAQYRDKAIQFI 264
Query: 179 I----AERKRFGAIL---------KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 225
I R+ F IL K G LID R + + W+ +
Sbjct: 265 INPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYG 324
Query: 226 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 268
RID+ +VS +L+ I A ++ L GSDHCPV +L
Sbjct: 325 SRIDFILVSLKLERCIKAADI------LPDILGSDHCPVYSDL 361
>sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus
GN=Apex2 PE=1 SV=1
Length = 516
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 37/208 (17%)
Query: 74 EKTALKYEPDGRVILAEFETFYLLNTYAPN-NGWKEEENSFQRRRKWDKRIQEFVLQCSG 132
E AL + R + + +T L+N Y P+ + K E +F+ R +++ L +G
Sbjct: 129 EGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQMRAEALLAAG 188
Query: 133 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE- 191
+I GDLN +H ID A+ L + +ED G RK +L
Sbjct: 189 SHVIILGDLNTAHRPID-----HCDASSLECF----EEDPG--------RKWMDGLLSNP 231
Query: 192 --------GRLIDAYRFLH--KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI 241
G +D+YR+LH +++ C WS ++ R+DY L DR
Sbjct: 232 GDEAGPHIGLFMDSYRYLHPKQQRAFTC---WSVVSGARHLNYGSRLDYV-----LGDRA 283
Query: 242 IACEMQGHGIELEGFYGSDHCPVSLELS 269
+ + L GSDHCPV L+
Sbjct: 284 LVIDTFQASFLLPEVMGSDHCPVGAVLN 311
>sp|P44318|EX3_HAEIN Exodeoxyribonuclease III OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=xthA PE=3 SV=1
Length = 267
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 33/227 (14%)
Query: 53 YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFET----FYLLNTYAPNNGWKE 108
+ G ALL K+ +PK + + R+I+A+ ET ++N Y P +
Sbjct: 62 HYGVALLTKQ--EPKVIRRGFPTD--NEDAQKRIIMADLETEFGLLTVINGYFPQGESRA 117
Query: 109 EENSFQRRRKWDKRIQEFVLQCSGK--PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVP 166
E F + K+ +Q+++ + K P++ GD+N+S ++D+ G
Sbjct: 118 HETKFPAKEKFYADLQQYLEKEHDKSNPILIMGDMNISPSDLDI------------GIGD 165
Query: 167 PNKEDW---GQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFSWSGNPIGKYR 222
N++ W G+ F ER + + G L D++R L+ D F + R
Sbjct: 166 ENRKRWLRTGKCSFLPEERAWYQRLYDYG-LEDSFRKLNPTANDKFSWFDYRSKGFDDNR 224
Query: 223 GKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG-SDHCPVSLEL 268
G +RID+ +VS++L +R C G +++ SDH P+ E
Sbjct: 225 G--LRIDHILVSQKLAER---CVDVGIALDIRAMEKPSDHAPIWAEF 266
>sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens
GN=APEX2 PE=1 SV=1
Length = 518
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 86/216 (39%), Gaps = 46/216 (21%)
Query: 83 DGRVILAEFE---------TFYLLNTYAPN-NGWKEEENSFQRRRKWDKRIQEFVLQCSG 132
+GR +L + + T L+N Y P+ + + E F+ R +I+ L +G
Sbjct: 130 EGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQIRAEALLAAG 189
Query: 133 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE- 191
+I GDLN +H ID + A L + +ED G RK ++L
Sbjct: 190 SHVIILGDLNTAHRPID-----HWDAVNLECF----EEDPG--------RKWMDSLLSNL 232
Query: 192 --------GRLIDAYRFLH--KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI 241
G ID+YR +E C WS ++ R+DY L DR
Sbjct: 233 GCQSASHVGPFIDSYRCFQPKQEGAFTC---WSAVTGARHLNYGSRLDYV-----LGDRT 284
Query: 242 IACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 277
+ + L GSDHCPV LS +S +++
Sbjct: 285 LVIDTFQASFLLPEVMGSDHCPVGAVLSVSSVPAKQ 320
>sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2
PE=2 SV=1
Length = 514
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 86/211 (40%), Gaps = 46/211 (21%)
Query: 83 DGRVILAEFE---------TFYLLNTYAPN-NGWKEEENSFQRRRKWDKRIQEFVLQCSG 132
+GR +L + + T L+N Y P+ + K E +F+ R +I+ L +G
Sbjct: 130 EGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQIRAEALLAAG 189
Query: 133 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE- 191
+I GDLN +H ID + A + + +ED G RK +L
Sbjct: 190 SHVIILGDLNTAHRPID-----HWDAVNMECF----EEDPG--------RKWMDGLLSNL 232
Query: 192 --------GRLIDAYR-FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRI 241
G ID+YR F K+K F+ WS ++ R+DY L DR
Sbjct: 233 GCESGSHMGPFIDSYRCFQPKQKG---AFTCWSTVSGARHLNYGSRLDYV-----LGDRT 284
Query: 242 IACEMQGHGIELEGFYGSDHCPVSLELSEAS 272
+ + L GSDHCPV LS +S
Sbjct: 285 LVIDTFQSSFLLPEVMGSDHCPVGAVLSVSS 315
>sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1
Length = 523
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 26/210 (12%)
Query: 64 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 123
F PK + KTA + +GR IL +F+ F L+ Y P N EN + RR + K +
Sbjct: 118 FFPKDID---RKTANWIDSEGRCILLDFQMFILIGVYCPVNS---GENRLEYRRAFYKAL 171
Query: 124 QEFV---LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 180
+E + ++ + +I GD+N+ ID + + L + +++ W + +
Sbjct: 172 RERIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMESRQ-WIRDLLLPS 230
Query: 181 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240
I GR+ R + C W+ + RIDY + + +L
Sbjct: 231 RLGLLLDI---GRIQHPTR----KGMFTC---WNTRLNTRPTNYGTRIDYTLATPDLLPW 280
Query: 241 IIACEMQGHGIELEGFYGSDHCPVSLELSE 270
+ ++ + GSDHCPV L+L E
Sbjct: 281 VQDADIMAEVM------GSDHCPVYLDLKE 304
>sp|P0A1A9|EX3_SALTY Exodeoxyribonuclease III OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=xthA PE=3 SV=1
Length = 268
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 36/235 (15%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFET----FYLL 97
Y +++ Y G ALL K + F + E R+I+AE + ++
Sbjct: 52 YNVFYHGQKGHY-GVALLTKATPISVRRGFPDDGE----EAQRRIIMAEIPSPLGNITVI 106
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFV---LQCSGKPLIWCGDLNVSHEEIDVSHPE 154
N Y P ++ F + ++ + +Q ++ L+C P++ GD+N+S ++D+
Sbjct: 107 NGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCD-NPVLIMGDMNISPTDLDI---- 161
Query: 155 FFAAAKLNGYVPPNKEDW---GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
G N++ W G+ F ER+ +LK G L+D +R + + MD F
Sbjct: 162 --------GIGEENRKRWLRTGKCSFLPEEREWMSRLLKWG-LVDTFRQANPQT-MD-KF 210
Query: 212 SW-SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF-YGSDHCPV 264
SW G + +RID + S L +R C G ++ SDH PV
Sbjct: 211 SWFDYRSKGFVDNRGLRIDLLLASAPLAER---CAETGIDYDIRSMEKPSDHAPV 262
>sp|P0A1B0|EX3_SALTI Exodeoxyribonuclease III OS=Salmonella typhi GN=xthA PE=3 SV=1
Length = 268
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 36/235 (15%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFET----FYLL 97
Y +++ Y G ALL K + F + E R+I+AE + ++
Sbjct: 52 YNVFYHGQKGHY-GVALLTKATPISVRRGFPDDGE----EAQRRIIMAEIPSPLGNITVI 106
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFV---LQCSGKPLIWCGDLNVSHEEIDVSHPE 154
N Y P ++ F + ++ + +Q ++ L+C P++ GD+N+S ++D+
Sbjct: 107 NGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCD-NPVLIMGDMNISPTDLDI---- 161
Query: 155 FFAAAKLNGYVPPNKEDW---GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
G N++ W G+ F ER+ +LK G L+D +R + + MD F
Sbjct: 162 --------GIGEENRKRWLRTGKCSFLPEEREWMSRLLKWG-LVDTFRQANPQT-MD-KF 210
Query: 212 SW-SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF-YGSDHCPV 264
SW G + +RID + S L +R C G ++ SDH PV
Sbjct: 211 SWFDYRSKGFVDNRGLRIDLLLASAPLAER---CAETGIDYDIRSMEKPSDHAPV 262
>sp|P09030|EX3_ECOLI Exodeoxyribonuclease III OS=Escherichia coli (strain K12) GN=xthA
PE=1 SV=4
Length = 268
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 36/235 (15%)
Query: 42 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFY----LL 97
Y +++ Y G ALL K+ + F + E R+I+AE + ++
Sbjct: 52 YNVFYHGQKGHY-GVALLTKETPIAVRRGFPGDDE----EAQRRIIMAEIPSLLGNVTVI 106
Query: 98 NTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK---PLIWCGDLNVSHEEIDVSHPE 154
N Y P ++ F + ++ + +Q + L+ K P++ GD+N+S ++D+
Sbjct: 107 NGYFPQGESRDHPIKFPAKAQFYQNLQNY-LETELKRDNPVLIMGDMNISPTDLDI---- 161
Query: 155 FFAAAKLNGYVPPNKEDW---GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGF 211
G N++ W G+ F ER+ ++ G L+D +R H F
Sbjct: 162 --------GIGEENRKRWLRTGKCSFLPEEREWMDRLMSWG-LVDTFR--HANPQTADRF 210
Query: 212 SWSGNPIGKYRGKR-MRIDYFIVSEELKDRIIACEMQGHGIELEGF-YGSDHCPV 264
SW + R +RID + S+ L + C G E+ SDH PV
Sbjct: 211 SWFDYRSKGFDDNRGLRIDLLLASQPLAE---CCVETGIDYEIRSMEKPSDHAPV 262
>sp|Q8BTF7|DNLI4_MOUSE DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=2
Length = 911
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 206 DMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 259
D++C +SW +P+ +R + +D + V +L RI A + +EL F+G+
Sbjct: 798 DLECRYSWDHSPLSMFRHYTIYLDLYAVINDLSSRIEATRLGITALELR-FHGA 850
>sp|Q5SSE9|ABCAD_MOUSE ATP-binding cassette sub-family A member 13 OS=Mus musculus GN=Abca13
PE=2 SV=1
Length = 5034
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 164 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG 219
++P N DW Q G T+ GA+L E R++++ R + GFS IG
Sbjct: 4393 HLPANAVDWRQYGITLYSHPYGGALLNEDRILESIRQCGVALCIVLGFSILSASIG 4448
>sp|Q9UTK6|YKR3_SCHPO G-patch domain-containing protein C1486.03 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1486.03c PE=3
SV=1
Length = 797
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 188 ILKEGRLIDAYRFLHKEKDM--------DCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 238
IL+EGRL ++R KE+DM + GF SG IG R +R I + SE++K
Sbjct: 20 ILEEGRLRPSFRGQQKERDMLGIFGEEDEDGFHNSG--IGSARLRRKNISFVEKSEQVK 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,259,367
Number of Sequences: 539616
Number of extensions: 4982658
Number of successful extensions: 9656
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 9593
Number of HSP's gapped (non-prelim): 30
length of query: 285
length of database: 191,569,459
effective HSP length: 116
effective length of query: 169
effective length of database: 128,974,003
effective search space: 21796606507
effective search space used: 21796606507
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)