Query 023207
Match_columns 285
No_of_seqs 188 out of 1295
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 09:14:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 2.8E-50 6E-55 339.4 18.5 238 9-270 18-261 (261)
2 PRK13911 exodeoxyribonuclease 100.0 4.8E-46 1E-50 319.1 23.6 234 3-268 13-249 (250)
3 PRK11756 exonuclease III; Prov 100.0 1.4E-39 2.9E-44 283.7 22.0 243 8-270 17-268 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 3.8E-37 8.3E-42 266.3 23.1 233 8-268 17-254 (254)
5 TIGR00633 xth exodeoxyribonucl 100.0 3.5E-34 7.5E-39 247.6 23.9 230 10-269 20-255 (255)
6 PRK05421 hypothetical protein; 99.9 1.5E-20 3.3E-25 163.1 14.9 186 15-271 67-262 (263)
7 COG3568 ElsH Metal-dependent h 99.8 1.9E-20 4.2E-25 158.1 13.9 206 9-271 33-258 (259)
8 KOG1294 Apurinic/apyrimidinic 99.8 6.4E-20 1.4E-24 161.2 14.9 240 9-270 82-335 (335)
9 TIGR03395 sphingomy sphingomye 99.8 7.7E-18 1.7E-22 147.3 16.0 135 10-146 29-191 (283)
10 PTZ00297 pantothenate kinase; 99.7 1.1E-16 2.3E-21 164.6 19.9 233 7-273 31-317 (1452)
11 PRK15251 cytolethal distending 99.7 4.7E-16 1E-20 132.6 17.0 127 8-147 46-199 (271)
12 PF03372 Exo_endo_phos: Endonu 99.7 8.7E-17 1.9E-21 136.3 7.2 130 9-147 21-171 (249)
13 PLN03144 Carbon catabolite rep 99.7 4E-15 8.7E-20 140.4 17.4 135 8-147 289-470 (606)
14 KOG3873 Sphingomyelinase famil 99.6 7.1E-16 1.5E-20 133.4 8.5 232 8-278 32-300 (422)
15 PF14529 Exo_endo_phos_2: Endo 99.6 1.1E-14 2.4E-19 110.9 10.0 119 94-265 1-119 (119)
16 COG3021 Uncharacterized protei 99.5 1.1E-13 2.5E-18 119.1 10.9 198 9-271 106-308 (309)
17 KOG2756 Predicted Mg2+-depende 99.5 2.2E-13 4.8E-18 113.7 9.4 213 9-269 122-348 (349)
18 smart00476 DNaseIc deoxyribonu 99.2 3.3E-10 7.3E-15 98.2 14.9 129 9-146 42-190 (276)
19 KOG2338 Transcriptional effect 99.0 1.5E-09 3.3E-14 98.4 9.4 137 6-147 151-307 (495)
20 smart00128 IPPc Inositol polyp 99.0 2E-08 4.3E-13 89.2 14.5 133 6-146 20-195 (310)
21 COG5239 CCR4 mRNA deadenylase, 98.7 1E-07 2.2E-12 83.4 10.5 56 7-62 63-131 (378)
22 KOG0620 Glucose-repressible al 98.6 3.8E-07 8.3E-12 82.0 10.0 55 8-63 54-116 (361)
23 COG2374 Predicted extracellula 97.8 7.1E-05 1.5E-09 71.7 7.4 136 93-273 622-791 (798)
24 KOG0566 Inositol-1,4,5-triphos 97.7 0.00021 4.5E-09 69.9 8.7 49 93-146 674-728 (1080)
25 PLN03191 Type I inositol-1,4,5 97.5 0.0021 4.6E-08 60.9 13.1 48 225-280 554-601 (621)
26 COG5411 Phosphatidylinositol 5 96.8 0.0046 9.9E-08 56.1 7.5 48 229-283 292-339 (460)
27 KOG1294 Apurinic/apyrimidinic 92.1 0.77 1.7E-05 41.2 7.9 152 80-270 9-164 (335)
28 PTZ00312 inositol-1,4,5-tripho 86.9 3.8 8.3E-05 35.9 7.8 55 93-147 81-143 (356)
29 KOG2338 Transcriptional effect 74.0 2.2 4.7E-05 39.9 2.0 46 225-270 429-493 (495)
30 KOG1387 Glycosyltransferase [C 25.9 72 0.0016 29.0 3.1 47 93-147 45-92 (465)
31 PF09949 DUF2183: Uncharacteri 25.3 88 0.0019 22.8 3.0 19 122-140 54-72 (100)
32 cd07391 MPP_PF1019 Pyrococcus 25.1 94 0.002 24.7 3.5 25 118-142 28-52 (172)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.8e-50 Score=339.41 Aligned_cols=238 Identities=29% Similarity=0.479 Sum_probs=195.4
Q ss_pred hhhhhhhcCCCeEEEehhhhhHhhhcCCCC--CCCceEEEeccCCCceeEEEEEeccCCcceeeeccCcCCCCCCCCCcE
Q 023207 9 APKNHQELKDDTKASREEKLILMRALSSPP--FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRV 86 (285)
Q Consensus 9 ~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~--~~gy~~~~~~~~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~gR~ 86 (285)
+++||.+++|||||||||+.. ...+.... ..||+.++..+++||+|||||||.+ |..+..++++. ...|.+||+
T Consensus 18 ~~~~l~~~~pDVlclQEtK~~-~~~fp~~~~~~~GY~~~~~~gqKgysGVailsr~~--~~~v~~g~~~~-~~~d~e~R~ 93 (261)
T COG0708 18 LLDWLEEEQPDVLCLQETKAQ-DEQFPREELEALGYHHVFNHGQKGYSGVAILSKKP--PDDVRRGFPGE-EEDDEEGRV 93 (261)
T ss_pred HHHHHHHhCCCEEEEEecccC-cccCCHhHHhhCCceEEEecCcCCcceEEEEEccC--chhhhcCCCCC-ccccccCcE
Confidence 889999999999999999974 22332222 3699766666889999999999986 44566777641 235678999
Q ss_pred EEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh--cCCCCEEEEcccCccCCCCcCCCh-hhhhhhhcCC
Q 023207 87 ILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEIDVSHP-EFFAAAKLNG 163 (285)
Q Consensus 87 l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~--~~~~p~Il~GDFN~~~~~~D~~~~-~~~~~~~~~~ 163 (285)
|.+.++.+.|+|+|+|+++... .+++.+|++|++.|..++.+ ..+.|+|+|||||.+|..+|.+++ +.|.
T Consensus 94 I~a~~~~~~v~~~Y~PnG~~~~-~~k~~yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~------ 166 (261)
T COG0708 94 IEAEFDGFRVINLYFPNGSSIG-LEKFDYKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWL------ 166 (261)
T ss_pred EEEEECCEEEEEEEcCCCCCCC-CcchHHHHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhh------
Confidence 9999999999999999998722 35688999999999999876 367999999999999999999987 4442
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCc-CCccceEEEEEeChhhHhhhe
Q 023207 164 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRII 242 (285)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~-~~~~~RID~i~~s~~l~~~v~ 242 (285)
|.+.++|+++||++|..+++.| |+|+||.++|... .||||+++.+.+ .+.|+|||||++|+.+..+++
T Consensus 167 -------n~~~~~f~~eeR~~~~~ll~~G-~~D~~R~~~p~~~---~YTwW~YR~~~~~~n~G~RID~~l~S~~L~~~~~ 235 (261)
T COG0708 167 -------NEGNSGFLPEERAWFRRLLNAG-FVDTFRLFHPEPE---KYTWWDYRANAARRNRGWRIDYILVSPALADRLK 235 (261)
T ss_pred -------cCCCCCCCHHHHHHHHHHHHcc-hhhhhHhhCCCCC---cccccccccchhhhcCceeEEEEEeCHHHHHHHH
Confidence 3477899999999999999987 9999999999884 599999876633 468999999999999999999
Q ss_pred eeEEccCccccCCCCCCCcccEEEEEee
Q 023207 243 ACEMQGHGIELEGFYGSDHCPVSLELSE 270 (285)
Q Consensus 243 ~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 270 (285)
+|.|..... ....+|||+||+++|++
T Consensus 236 ~a~I~~~~r--g~e~pSDHaPV~~e~~~ 261 (261)
T COG0708 236 DAGIDREVR--GWEKPSDHAPVWVELDL 261 (261)
T ss_pred hcCccHHHh--cCCCCCCcCcEEEEecC
Confidence 999997421 12466999999999864
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=4.8e-46 Score=319.09 Aligned_cols=234 Identities=33% Similarity=0.607 Sum_probs=189.5
Q ss_pred CccCCChhhhhhhcCCCeEEEehhhhhHhhhcCCCCCCCceEEEec-cCCCceeEEEEEeccCCcceeeeccCcCCCCCC
Q 023207 3 AAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSL-ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYE 81 (285)
Q Consensus 3 ~~~~~~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~~gy~~~~~~-~~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d 81 (285)
++=.+++.++|++++|||||||||+... ..+. ...+||..++.. ++++++||||++|.+ |..+..+++. ...|
T Consensus 13 ~~~~~~~~~~l~~~~~DIiclQEtK~~~-~~~~-~~~~gY~~~~~~~~~kgy~GVAi~~k~~--~~~v~~~~~~--~~~d 86 (250)
T PRK13911 13 ACMTKGFMDFFNSVDADVFCIQESKMQQ-EQNT-FEFKGYFDFWNCAIKKGYSGVVTFTKKE--PLSVSYGINI--EEHD 86 (250)
T ss_pred HhhhhhHHHHHHhcCCCEEEEEeecccc-cccc-cccCCceEEEEecccCccceEEEEEcCC--chheEEcCCC--Cccc
Confidence 3434689999999999999999999742 2221 235699877653 367899999999985 4555666642 3457
Q ss_pred CCCcEEEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc-CCCCEEEEcccCccCCCCcCCChhhhhhhh
Q 023207 82 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160 (285)
Q Consensus 82 ~~gR~l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~ 160 (285)
.+||++.++++.++|+|+|+|+++... .++++|.+|+++|.+++... .+.++|+|||||+++..+|.+++..
T Consensus 87 ~eGR~I~~~~~~~~l~nvY~Pn~~~~~--~r~~~K~~~~~~~~~~l~~l~~~~~~Ii~GD~Nva~~~~D~~~~~~----- 159 (250)
T PRK13911 87 KEGRVITCEFESFYLVNVYTPNSQQAL--SRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKT----- 159 (250)
T ss_pred ccCCEEEEEECCEEEEEEEecCCCCCC--cchHHHHHHHHHHHHHHHhcccCCCEEEEccccCCCChhhccChhh-----
Confidence 799999999999999999999988543 47888999999999998863 4579999999999999999987642
Q ss_pred cCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCC-CcCCccceEEEEEeChhhHh
Q 023207 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKD 239 (285)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~-~~~~~~~RID~i~~s~~l~~ 239 (285)
+.+.++|+++||++|..+++.+ |+|+||.+||... ..||||+++.+ ...+.++||||||+|+.+..
T Consensus 160 ----------~~~~~gf~~~er~~f~~~l~~g-l~D~~R~~~p~~~--~~yTww~~~~~~~~~n~g~RIDyilvs~~~~~ 226 (250)
T PRK13911 160 ----------NRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKE--KAYTWWSYMQQARDKNIGWRIDYFLCSNPLKT 226 (250)
T ss_pred ----------cCCCCCcCHHHHHHHHHHHhcC-CeehhhhhCCCCC--CCCccCCCcCCccccCCcceEEEEEEChHHhh
Confidence 2356789999999999999975 9999999999853 46999986533 34578999999999999998
Q ss_pred hheeeEEccCccccCCCCCCCcccEEEEE
Q 023207 240 RIIACEMQGHGIELEGFYGSDHCPVSLEL 268 (285)
Q Consensus 240 ~v~~~~i~~~~~~~~~~~~SDH~PV~~~l 268 (285)
.+.++.+... ..+|||+||+++|
T Consensus 227 ~~~~~~i~~~------~~~SDH~Pv~~~~ 249 (250)
T PRK13911 227 RLKDALIYKD------ILGSDHCPVGLEL 249 (250)
T ss_pred hEEEEEECCC------CCCCCcccEEEEe
Confidence 8899888752 5789999999987
No 3
>PRK11756 exonuclease III; Provisional
Probab=100.00 E-value=1.4e-39 Score=283.71 Aligned_cols=243 Identities=20% Similarity=0.315 Sum_probs=175.2
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCC--CCCCceEEEeccCCCceeEEEEEeccCCcceeeeccCcCCCCCCCCCc
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSP--PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR 85 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~--~~~gy~~~~~~~~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~gR 85 (285)
.+.++|++.+|||||||||+... ..+... ...||.+++. +..+++|||||||.++ ..+...++. ...+.++|
T Consensus 17 ~i~~~i~~~~pDIi~LQE~~~~~-~~~~~~~~~~~gy~~~~~-~~~~~~GvailSr~p~--~~~~~~~~~--~~~~~~~r 90 (268)
T PRK11756 17 QLEAIIEKHQPDVIGLQETKVHD-EMFPLEEVEALGYHVFYH-GQKGHYGVALLSKQTP--IAVRKGFPT--DDEEAQRR 90 (268)
T ss_pred HHHHHHHhcCCCEEEEEeccccc-ccCCHHHHHhcCCEEEEe-CCCCCCEEEEEECCCh--HHeEECCCC--ccccccCC
Confidence 47899999999999999997531 111111 1258987765 4667899999999974 333344432 12344688
Q ss_pred EEEEEeC----CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh--cCCCCEEEEcccCccCCCCcCCChhhhhhh
Q 023207 86 VILAEFE----TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159 (285)
Q Consensus 86 ~l~~~~~----~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~--~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~ 159 (285)
++.+.+. .+.++|+|+|++....+..++..|.+|++.|.+++.+ ..+.|+|||||||+++...|...+......
T Consensus 91 ~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~pvIl~GDfN~~~~~~D~~~~~~~~~~ 170 (268)
T PRK11756 91 IIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLDIGIGEENRKR 170 (268)
T ss_pred EEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHHhccCCCEEEEeecccCCChhhcCCcccChHH
Confidence 9887773 5999999999986533323455677888888888865 356899999999999998887543100000
Q ss_pred hcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCc-CCccceEEEEEeChhhH
Q 023207 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELK 238 (285)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~-~~~~~RID~i~~s~~l~ 238 (285)
. ...+.++++++||++++.+++.+ |+|+||.+||... ..|||++.....+ .+.++||||||+++.+.
T Consensus 171 ~---------~~~~~~~~~~~er~~~~~l~~~~-l~D~~R~~~p~~~--~~~T~~~~~~~~~~~~~g~RIDyi~~s~~~~ 238 (268)
T PRK11756 171 W---------LRTGKCSFLPEEREWLDRLMDWG-LVDTFRQLNPDVN--DRFSWFDYRSKGFDDNRGLRIDLILATQPLA 238 (268)
T ss_pred h---------cccCCccCCHHHHHHHHHHHhCC-cEeehhhhCCCCC--CcccCcCCcccccccCCceEEEEEEeCHHHH
Confidence 0 01245678999999999888755 9999999999743 5799987654332 36789999999999999
Q ss_pred hhheeeEEccCccccCCCCCCCcccEEEEEee
Q 023207 239 DRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270 (285)
Q Consensus 239 ~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 270 (285)
.+|.+|.|..... ....+|||+||+++|++
T Consensus 239 ~~v~~~~i~~~~~--~~~~~SDH~PV~~~~~~ 268 (268)
T PRK11756 239 ERCVETGIDYDIR--GMEKPSDHAPIWATFKL 268 (268)
T ss_pred hhheEeEEeHHHh--CCCCCCCcccEEEEEeC
Confidence 8999999875321 12468999999999874
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=100.00 E-value=3.8e-37 Score=266.25 Aligned_cols=233 Identities=29% Similarity=0.545 Sum_probs=175.4
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCC--CCCCceEEEeccCCCceeEEEEEeccCCcceeeeccCcCCCCCCCCCc
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSP--PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR 85 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~--~~~gy~~~~~~~~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~gR 85 (285)
.+.++|..++|||||||||+... ..+... ...||..+++. ..+++||||++|.+ |..+..++.. ...+.++|
T Consensus 17 ~~~~~l~~~~~DIi~LQE~~~~~-~~~~~~~~~~~g~~~~~~~-~~g~~Gvailsr~~--~~~~~~~~~~--~~~~~~~r 90 (254)
T TIGR00195 17 KGLAWLKENQPDVLCLQETKVQD-EQFPLEPFHKEGYHVFFSG-QKGYSGVAIFSKEE--PLSVRRGFGV--EEEDAEGR 90 (254)
T ss_pred HHHHHHHhcCCCEEEEEecccch-hhCCHHHhhcCCcEEEEec-CCCcceEEEEEcCC--cceEEECCCC--cccccCCC
Confidence 36899999999999999998642 112111 13688877764 46788999999963 4444443432 23456899
Q ss_pred EEEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEcccCccCCCCcCCChhhhhhhhcCC
Q 023207 86 VILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 163 (285)
Q Consensus 86 ~l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~~ 163 (285)
++.+++.++.++|+|+|+++... ..++..|.+|++.|.+++.+. .+.|+|+|||||+.+...|..++..
T Consensus 91 ~i~~~~~~~~l~~~~~p~~~~~~-~~~~~~r~~~~~~l~~~~~~~~~~~~pvIi~GDfN~~~~~~d~~~~~~-------- 161 (254)
T TIGR00195 91 IIMAEFDSFLVINGYFPNGSRDD-SEKLPYKLQWLEALQNYLEKLVDKDKPVLICGDMNIAPTEIDLHSPDE-------- 161 (254)
T ss_pred EEEEEECCEEEEEEEccCCCCCC-CccHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChhhccChhh--------
Confidence 99999999999999999965422 234567889999998888763 4689999999999999888765431
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCC-cCCccceEEEEEeChhhHhhhe
Q 023207 164 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK-YRGKRMRIDYFIVSEELKDRII 242 (285)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~-~~~~~~RID~i~~s~~l~~~v~ 242 (285)
+.+..+|++++|++|+.+++.+ |+|+||..+|.. ..|||++.+... ..+.++||||||+|+++..++.
T Consensus 162 -------~~~~~~~~~~e~~~~~~l~~~~-l~D~~r~~~~~~---~~~T~~~~~~~~~~~~~g~RID~i~~s~~~~~~v~ 230 (254)
T TIGR00195 162 -------NRNHTGFLPEEREWLDRLLEAG-LVDTFRKFNPDE---GAYSWWDYRTKARDRNRGWRIDYFLVSEPLKERCV 230 (254)
T ss_pred -------cCCCcCcChHHHHHHHHHHHcC-CEeeecccCCCC---CCCcccCCcCCccccCCceEEEEEEECHHHHhhhh
Confidence 2245678999999999998765 999999999975 479998754332 2356889999999999999999
Q ss_pred eeEEccCccccCCCCCCCcccEEEEE
Q 023207 243 ACEMQGHGIELEGFYGSDHCPVSLEL 268 (285)
Q Consensus 243 ~~~i~~~~~~~~~~~~SDH~PV~~~l 268 (285)
++.|..... ....+|||+||+++|
T Consensus 231 ~~~i~~~~~--~~~~~SDH~Pv~~~~ 254 (254)
T TIGR00195 231 DCGIDYDIR--GSEKPSDHCPVVLEF 254 (254)
T ss_pred EEEEcHHHh--cCCCCCCcccEEEeC
Confidence 999976321 125789999999875
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.5e-34 Score=247.64 Aligned_cols=230 Identities=32% Similarity=0.587 Sum_probs=167.3
Q ss_pred hhhhhhcCCCeEEEehhhhhHhhhcCC--CCCCCceEEEeccC-CCceeEEEEEeccCCcceeeeccCcCCCCCCCCCcE
Q 023207 10 PKNHQELKDDTKASREEKLILMRALSS--PPFKNYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRV 86 (285)
Q Consensus 10 ~~~l~~~~~DIv~LQE~~~~~~~~l~~--~~~~gy~~~~~~~~-~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~gR~ 86 (285)
.++|+.++|||||||||+... ..+.. ....||..++.... .+++|+|||+|.++. .+..++.. ...+.++|+
T Consensus 20 ~~~l~~~~~DIv~LQE~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~G~ailsr~~~~--~~~~~~~~--~~~~~~~r~ 94 (255)
T TIGR00633 20 LDWLKEEQPDVLCLQETKVAD-EQFPAELFEELGYHVFFHGAKSKGYSGVAILSKVEPL--DVRYGFGG--EEHDEEGRV 94 (255)
T ss_pred HHHHHhcCCCEEEEEeccCch-hhCCHhHhccCCceEEEeecccCCcceEEEEEcCCcc--eEEECCCC--CcccCCCcE
Confidence 889999999999999998642 22211 12458877665332 367899999998753 22332332 234567899
Q ss_pred EEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh--cCCCCEEEEcccCccCCCCcCCChhhhhhhhcCCC
Q 023207 87 ILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 164 (285)
Q Consensus 87 l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~--~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~~~ 164 (285)
+.+.++.++|+++|+|++.... ..+...|.++++.+.+.+.+ ..+.|+|+|||||+.+..+|..++..
T Consensus 95 l~~~~~~~~i~~vy~p~~~~~~-~~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~--------- 164 (255)
T TIGR00633 95 ITAEFDGFTVVNVYVPNGGSRG-LERLEYKLQFWDALFQYYEKELDAGKPVIICGDMNVAHTEIDLGNPKE--------- 164 (255)
T ss_pred EEEEECCEEEEEEEccCCCCCC-chhHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChHHccChhh---------
Confidence 8888899999999999977321 12344577788887776543 25689999999999998777665421
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCC-cCCccceEEEEEeChhhHhhhee
Q 023207 165 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK-YRGKRMRIDYFIVSEELKDRIIA 243 (285)
Q Consensus 165 ~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~-~~~~~~RID~i~~s~~l~~~v~~ 243 (285)
+.+..+++..++..|+.+++.+ |+|+|+..+|... ..|||++..... ..+.+.||||||+++.+..++.+
T Consensus 165 ------~~~~~~~~~~~~~~~~~~~~~~-l~D~~~~~~~~~~--~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~ 235 (255)
T TIGR00633 165 ------NKGNAGFTPEEREWFDELLEAG-LVDTFRHFNPDTE--GAYTWWDYRSGARDRNRGWRIDYFLVSEPLAERVVD 235 (255)
T ss_pred ------cCCCCCcCHHHHHHHHHHHHcC-CEecchhhCCCCC--CcCcCcCCccCccccCCceEEEEEEECHHHHhhhcE
Confidence 1234567788888999988855 9999999988753 369998754322 23567899999999999888888
Q ss_pred eEEccCccccCCCCCCCcccEEEEEe
Q 023207 244 CEMQGHGIELEGFYGSDHCPVSLELS 269 (285)
Q Consensus 244 ~~i~~~~~~~~~~~~SDH~PV~~~l~ 269 (285)
+.|... ..+|||+||+++|+
T Consensus 236 ~~i~~~------~~~SDH~pv~~~~~ 255 (255)
T TIGR00633 236 SYIDSE------IRGSDHCPIVLELD 255 (255)
T ss_pred eEECCC------CCCCCcccEEEEEC
Confidence 988753 35699999999874
No 6
>PRK05421 hypothetical protein; Provisional
Probab=99.85 E-value=1.5e-20 Score=163.14 Aligned_cols=186 Identities=15% Similarity=0.117 Sum_probs=106.4
Q ss_pred hcCCCeEEEehhhhhHh-hhcCCCCCCCceEEE--ec-cCCCceeEEEEEeccCCcceeeeccCcCCCCCCCCCcEE-EE
Q 023207 15 ELKDDTKASREEKLILM-RALSSPPFKNYQIWW--SL-ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVI-LA 89 (285)
Q Consensus 15 ~~~~DIv~LQE~~~~~~-~~l~~~~~~gy~~~~--~~-~~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~gR~l-~~ 89 (285)
..+||||||||+..... ..+.. ..||.+.+ +. ...+++|+|||||.|+.. . ..+... ......+|.+ .+
T Consensus 67 ~~~~DiI~LQEv~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~GvaiLSR~pi~~--~-~~~~~~-~~~~~~~r~~l~a 140 (263)
T PRK05421 67 GKDADLVLLQEAQTTPELVQFAT--ANYLAADQAPAFVLPQHPSGVMTLSKAHPVY--C-CPLRER-EPWLRLPKSALIT 140 (263)
T ss_pred ccCCCEEEEEecccCcchHHHhh--cccchHHhccccccCCCccceeEeeecccce--e-eccCCC-CccccCcceeEEE
Confidence 78999999999974311 11111 12343222 11 134578999999997532 1 112210 0111133433 33
Q ss_pred E--e-C--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEcccCccCCCCcCCChhhhhhhhcCCC
Q 023207 90 E--F-E--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 164 (285)
Q Consensus 90 ~--~-~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~~~ 164 (285)
. + . .+.|+|+|+++..... ..|...++.|.+++.. ...|+|||||||+.... .
T Consensus 141 ~~~~~~g~~l~v~ntHl~~~~~~~-----~~r~~q~~~l~~~~~~-~~~p~Il~GDFN~~~~~----~------------ 198 (263)
T PRK05421 141 EYPLPNGRTLLVVNIHAINFSLGV-----DVYSKQLEPIGDQIAH-HSGPVILAGDFNTWSRK----R------------ 198 (263)
T ss_pred EEEeCCCCEEEEEEECccccCcCh-----HHHHHHHHHHHHHHHh-CCCCEEEEcccccCccc----c------------
Confidence 3 3 2 4999999997653211 1244556677777764 35799999999984321 0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCcCCccceEEEEEeChhhHhhheee
Q 023207 165 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 244 (285)
Q Consensus 165 ~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i~~s~~l~~~v~~~ 244 (285)
...+..+.+..++.|++. +... ...+ + +.||||||++ ++ .+.++
T Consensus 199 -----------------~~~l~~~~~~~~l~~~~~---~~~~--~~~~--------~---~~~ID~I~~~-~~--~v~~~ 242 (263)
T PRK05421 199 -----------------MNALKRFARELGLKEVRF---TDDQ--RRRA--------F---GRPLDFVFYR-GL--NVSKA 242 (263)
T ss_pred -----------------hHHHHHHHHHcCCCccCc---CCcc--cccc--------c---CCCcceEEEC-Cc--EEEEE
Confidence 023455554444655421 1110 0001 1 3799999995 44 36777
Q ss_pred EEccCccccCCCCCCCcccEEEEEeeC
Q 023207 245 EMQGHGIELEGFYGSDHCPVSLELSEA 271 (285)
Q Consensus 245 ~i~~~~~~~~~~~~SDH~PV~~~l~~~ 271 (285)
.+.. ...|||+||+++|.+.
T Consensus 243 ~v~~-------~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 243 SVLV-------TRASDHNPLLVEFSLK 262 (263)
T ss_pred EcCC-------CCCCCccCEEEEEEec
Confidence 7764 5799999999999875
No 7
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.85 E-value=1.9e-20 Score=158.06 Aligned_cols=206 Identities=19% Similarity=0.194 Sum_probs=118.9
Q ss_pred hhhhhhhcCCCeEEEehhhhhHh--hhcC-C-----CCCCCceEEEec------cCCCceeEEEEEeccCCcceeeeccC
Q 023207 9 APKNHQELKDDTKASREEKLILM--RALS-S-----PPFKNYQIWWSL------ADSKYAGTALLVKKCFQPKKVSFSLE 74 (285)
Q Consensus 9 ~~~~l~~~~~DIv~LQE~~~~~~--~~l~-~-----~~~~gy~~~~~~------~~~~~~GvaIlsr~~~~~~~~~~~l~ 74 (285)
+.+.++...+|||||||+...+. +... . ....+..++++. ...+.+|++||||.++.-+. ...++
T Consensus 33 ~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~GnaiLS~~pi~~v~-~~~lp 111 (259)
T COG3568 33 IAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLAPYWWSGAAFGAVYGEGQHGNAILSRLPIRDVE-NLALP 111 (259)
T ss_pred HHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcCCccccchhhhhhhcccceeeeEEEecCcccchh-hccCC
Confidence 56788999999999999985211 1100 0 001122222221 13457899999988642221 23344
Q ss_pred cCCCCCCCCCc-EEEEEe-----CCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEcccCccCCCC
Q 023207 75 KTALKYEPDGR-VILAEF-----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEI 148 (285)
Q Consensus 75 ~~~~~~d~~gR-~l~~~~-----~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~ 148 (285)
. ....+.| ++.+++ +.+.|+|+|+--... .|.++++.|.+.+.-....|+|+|||||+.+++.
T Consensus 112 ~---~~~~~~Rgal~a~~~~~~g~~l~V~~~HL~l~~~--------~R~~Q~~~L~~~~~l~~~~p~vl~GDFN~~p~s~ 180 (259)
T COG3568 112 D---PTGLEPRGALLAEIELPGGKPLRVINAHLGLSEE--------SRLRQAAALLALAGLPALNPTVLMGDFNNEPGSA 180 (259)
T ss_pred C---CCCCCCceeEEEEEEcCCCCEEEEEEEeccccHH--------HHHHHHHHHHhhccCcccCceEEEccCCCCCCCc
Confidence 2 1123455 344433 279999999962221 2555666666532222445999999999988765
Q ss_pred cCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCcCCccceE
Q 023207 149 DVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 228 (285)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~~~~~~RI 228 (285)
++... .. . .+... ..+.+++....+.. .-||+++. +..||
T Consensus 181 ~yr~~-------------------~~-~-------~~~~~---~~~~~~~~~a~~~~----~~tfps~~------p~lri 220 (259)
T COG3568 181 EYRLA-------------------AR-S-------PLNAQ---AALTGAFAPAVGRT----IRTFPSNT------PLLRL 220 (259)
T ss_pred cceec-------------------cC-C-------chhhc---cccccccCcccCcc----cCCCCCCC------ccccc
Confidence 54210 00 0 01111 12445443333211 23676632 23699
Q ss_pred EEEEeChhhHhhheeeEEccCccccCCCCCCCcccEEEEEeeC
Q 023207 229 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 271 (285)
Q Consensus 229 D~i~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~ 271 (285)
||||+++.+. +..++++.+.. ....|||+||.++|.++
T Consensus 221 D~Ifvs~~~~--i~~~~v~~~~~---a~~aSDHlPl~aeL~~~ 258 (259)
T COG3568 221 DRIFVSKELA--IRSVHVLTDRL---ARVASDHLPLLAELRLK 258 (259)
T ss_pred cEEEecCccc--EEEEEeecCCC---ccccccccceEEEEecC
Confidence 9999999987 67778876532 36799999999999875
No 8
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.84 E-value=6.4e-20 Score=161.20 Aligned_cols=240 Identities=37% Similarity=0.544 Sum_probs=172.9
Q ss_pred hhhhhhhcCCCeEEEehhhhhHhhhc--CCCCCCCc-eEEEecc--CCCceeEEEEEeccCCcceeeeccCcCCCCCCCC
Q 023207 9 APKNHQELKDDTKASREEKLILMRAL--SSPPFKNY-QIWWSLA--DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPD 83 (285)
Q Consensus 9 ~~~~l~~~~~DIv~LQE~~~~~~~~l--~~~~~~gy-~~~~~~~--~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~ 83 (285)
...++....+|++|+||++.. .... ......+| +.++..+ ..++.|++.+++.. |..+.+++..-...++..
T Consensus 82 ~~~~~~~~l~d~~~~~~t~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~--p~~v~~~~~~~~s~h~~~ 158 (335)
T KOG1294|consen 82 GDPEISSELRDLQCLLETKCT-IDSGPCSHPTEKGYTHSLLSCASKKDGYSGEIDYSKFK--PLKVHYGFGAMGSDHRPV 158 (335)
T ss_pred cchhccccchhhhhhhhccce-eccCcceecccCCcccceeecccccCCccceeeeeecc--cceeeecccccCCccCcc
Confidence 456777888999999999863 1211 11225688 5666643 33678899998873 666665554101356778
Q ss_pred CcEEEEEeCCEEEEEEEeeCCCCCcchhhHHHH--HHHHHHHHHHHHhc-----CCCCEEEEcccCccCCCCcCCChhhh
Q 023207 84 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRR--RKWDKRIQEFVLQC-----SGKPLIWCGDLNVSHEEIDVSHPEFF 156 (285)
Q Consensus 84 gR~l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r--~~~~~~l~~~l~~~-----~~~p~Il~GDFN~~~~~~D~~~~~~~ 156 (285)
||++.++++.+.+++.|+|+......+ .+++ ..|...+...+.+. ...++++|||.|..+..+|...+.
T Consensus 159 g~~i~~e~e~~~l~~~y~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~~i~~~~~~-- 234 (335)
T KOG1294|consen 159 GRVIIAEFEIFILINTYVPNIGGGLVN--LVYRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSKPL-- 234 (335)
T ss_pred ceEEEEeecceeeccccCcccccccch--hhhhhhhhhHHHHHHHhhhccccccccCcceeccccccchhhccccccc--
Confidence 999999999999999999998764322 2233 55666666666542 224899999999999887742111
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCHHHHHHH-HhhhhcCCeeeeeeccCCCCCCceeeeeeCC-CCCCcCCccceEEEEEeC
Q 023207 157 AAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAILKEGRLIDAYRFLHKEKDMDCGFSWSGN-PIGKYRGKRMRIDYFIVS 234 (285)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l-~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~-~~~~~~~~~~RID~i~~s 234 (285)
+.-.......++|++++|.++ ..+++.+.++|+||.++++.. ..||+|.. .+.+.++.++|+||++|+
T Consensus 235 --------~~~~~~~~~~~~~t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~--~~~t~Wk~~~~~r~~~~~~r~dy~~Vs 304 (335)
T KOG1294|consen 235 --------VSPAGNTLSNAGFTPEERDSFFAELLEKGPLIDTYRELHKDQK--KAYTFWKYMPNGRQRGHGERCDYILVS 304 (335)
T ss_pred --------cccccCCcCCCCCCHHHhhhHHHhhccCCcceeehhhhcCCcc--ccccchhhccccccCCCCCceeEEEec
Confidence 000011125678999999999 788887779999999999874 36887654 455667899999999999
Q ss_pred hhhHhhheeeEEccCccccCCCCCCCcccEEEEEee
Q 023207 235 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270 (285)
Q Consensus 235 ~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 270 (285)
......+.++.|..++ ..+|||+||++.|.+
T Consensus 305 k~~~n~~r~~~Ic~r~-----~~gsdh~pi~~~~~~ 335 (335)
T KOG1294|consen 305 KPGPNNGRRFYICSRP-----IHGSDHCPITLEFFL 335 (335)
T ss_pred CcCCCCCceeeeecCc-----cCCCCCCCeeeeecC
Confidence 9999999999999753 689999999998853
No 9
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.78 E-value=7.7e-18 Score=147.30 Aligned_cols=135 Identities=15% Similarity=0.098 Sum_probs=74.3
Q ss_pred hhhhhhcCCCeEEEehhhhhHhhh-cCCCCCCCceEEE--e---------------ccCCCceeEEEEEeccCCcceeee
Q 023207 10 PKNHQELKDDTKASREEKLILMRA-LSSPPFKNYQIWW--S---------------LADSKYAGTALLVKKCFQPKKVSF 71 (285)
Q Consensus 10 ~~~l~~~~~DIv~LQE~~~~~~~~-l~~~~~~gy~~~~--~---------------~~~~~~~GvaIlsr~~~~~~~~~~ 71 (285)
.+.+...+||||||||+....... +...+...|.+.. . ......+|++||||+|+.... ..
T Consensus 29 ~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~~yp~~~~~~g~~~~g~~~~~g~~~~~~~~~~G~~iLSr~Pi~~~~-~~ 107 (283)
T TIGR03395 29 ASADYIKNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVIGRSKKGWDKTLGNYSSSALEDGGVAIVSKWPIEEKI-QY 107 (283)
T ss_pred HHhhcccCCCEEEEecccchHHHHHHHHHHHhhCCceEeecccccccchhccccccccCccCCEEEEEECCCccccE-EE
Confidence 344567799999999997432111 2111112222111 0 001235699999999864322 12
Q ss_pred ccCcCCCCCCC--CCcEEEEEeC----CEEEEEEEeeCCCCCcch-hhHHHHHHHHHHHHHHHHhc---CCCCEEEEccc
Q 023207 72 SLEKTALKYEP--DGRVILAEFE----TFYLLNTYAPNNGWKEEE-NSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDL 141 (285)
Q Consensus 72 ~l~~~~~~~d~--~gR~l~~~~~----~~~v~~vy~p~~~~~~~~-~~~~~r~~~~~~l~~~l~~~---~~~p~Il~GDF 141 (285)
.++.. ...+. ...++.+++. .+.|+|+|+.+....... .....|..+++.|.+++... .+.|+||||||
T Consensus 108 ~f~~~-~~~d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDf 186 (283)
T TIGR03395 108 IFNKG-CGADNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNIPKDETVLIGGDL 186 (283)
T ss_pred EccCC-CCCccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccCCCCceEEEEeeC
Confidence 22210 11111 1225555553 599999999764321100 00224677788888888642 35789999999
Q ss_pred CccCC
Q 023207 142 NVSHE 146 (285)
Q Consensus 142 N~~~~ 146 (285)
|+.+.
T Consensus 187 N~~~~ 191 (283)
T TIGR03395 187 NVNKG 191 (283)
T ss_pred CCCCC
Confidence 99664
No 10
>PTZ00297 pantothenate kinase; Provisional
Probab=99.74 E-value=1.1e-16 Score=164.60 Aligned_cols=233 Identities=13% Similarity=0.115 Sum_probs=116.4
Q ss_pred CChhhhhhhc-CCCeEEEehhhhhHh------hh------cCCC-CCCCceEEEe-ccC---C-------CceeEEEEEe
Q 023207 7 KDAPKNHQEL-KDDTKASREEKLILM------RA------LSSP-PFKNYQIWWS-LAD---S-------KYAGTALLVK 61 (285)
Q Consensus 7 ~~~~~~l~~~-~~DIv~LQE~~~~~~------~~------l~~~-~~~gy~~~~~-~~~---~-------~~~GvaIlsr 61 (285)
+.+..+|+.+ +||||||||+..... .+ +... ...||.++.. ... . ..+|+|||||
T Consensus 31 ~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AILSR 110 (1452)
T PTZ00297 31 ERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVDELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIASR 110 (1452)
T ss_pred HHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHHHHHHhcCCceeEeecCccccccccCccccCCEEEEEEC
Confidence 4567788884 789999999985310 00 0000 1137754332 111 1 4579999999
Q ss_pred ccCCcceeeeccCcCCCCCCCCCc-EEEE--Ee-------CCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh--
Q 023207 62 KCFQPKKVSFSLEKTALKYEPDGR-VILA--EF-------ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-- 129 (285)
Q Consensus 62 ~~~~~~~~~~~l~~~~~~~d~~gR-~l~~--~~-------~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~-- 129 (285)
+|+.-.. ...++..........| ++.+ .+ ..+.++++|+-....... |.++..++.+++..
T Consensus 111 ~PI~~~~-~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~~~------R~~Q~~ql~~~i~~~i 183 (1452)
T PTZ00297 111 FPIWQRG-SYTFRNHERGEQSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSLPS------TSSQVQETRRFVESVI 183 (1452)
T ss_pred CChhhce-eeecCcccccccccccceEEEEEEccccCCCCceEEEEEeCCCCCCCcch------HHHHHHHHHHHHHHhh
Confidence 9863222 2333310000111233 3333 33 259999999965533211 23334444444432
Q ss_pred ---------cCCCCEEEEcccCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhc-CCeeeeee
Q 023207 130 ---------CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE-GRLIDAYR 199 (285)
Q Consensus 130 ---------~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~-~~l~D~~r 199 (285)
....|+||+||||+.. +|+.+ .+.-+.+-...++.+... .++.|++.
T Consensus 184 ~~~~~~~~~~~~~PvILaGDFN~~~--~~~~~---------------------~~~~s~e~~~ml~~l~~~~~~l~dv~~ 240 (1452)
T PTZ00297 184 ANVYEQNNDGAEIPFVIAGDFNING--IDPHN---------------------GGHPTKRFQELLNELQDLGSGVREVIY 240 (1452)
T ss_pred hhhcccccCCCCCCEEEEeeCCCcc--ccccc---------------------cCCccHHHHHHHHHhhhccccHhHHhH
Confidence 1457999999999842 11110 000011111222233221 22555543
Q ss_pred ccC---CCCCCceeeeeeCCCC--CCcCCccceEEEEEeChhhHhhheeeEEccCcc--ccCCCCCCCcccEEEEEeeCC
Q 023207 200 FLH---KEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI--ELEGFYGSDHCPVSLELSEAS 272 (285)
Q Consensus 200 ~~~---p~~~~~~~~T~~~~~~--~~~~~~~~RID~i~~s~~l~~~v~~~~i~~~~~--~~~~~~~SDH~PV~~~l~~~~ 272 (285)
..+ |..- +..+|++... .+......||||||+++.+. +.++.|..... ...+.++|||+||+++|.+..
T Consensus 241 ~~~~~~~~T~--p~~~~fP~~~p~~~~~~~~~riD~Ifv~~~v~--v~~~~v~~~~~~~~~~~~~~SDH~Pv~a~l~l~~ 316 (1452)
T PTZ00297 241 DETGQHPPTR--PPILFFPEQSKLERYSSTPQRQDYFFVTPCVQ--VEKPRIEKFVVSSRRPYTYLSDHFGVSARLTLPL 316 (1452)
T ss_pred hhcCCCCCCC--CccccccccCccccccCCCcceeEEEEeCCce--EEEEEEecccccCCCCCCCcCcCccEEEEEEeCC
Confidence 322 2110 1233322111 01112236999999998765 67777743200 012467999999999999943
Q ss_pred C
Q 023207 273 S 273 (285)
Q Consensus 273 ~ 273 (285)
.
T Consensus 317 ~ 317 (1452)
T PTZ00297 317 N 317 (1452)
T ss_pred C
Confidence 3
No 11
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.71 E-value=4.7e-16 Score=132.55 Aligned_cols=127 Identities=11% Similarity=0.057 Sum_probs=79.8
Q ss_pred Chhhhhhhc-CCCeEEEehhhhhHhh------hcCC----------------CCCCCceEEEecc---CCCceeEEEEEe
Q 023207 8 DAPKNHQEL-KDDTKASREEKLILMR------ALSS----------------PPFKNYQIWWSLA---DSKYAGTALLVK 61 (285)
Q Consensus 8 ~~~~~l~~~-~~DIv~LQE~~~~~~~------~l~~----------------~~~~gy~~~~~~~---~~~~~GvaIlsr 61 (285)
+...+|... ++|||++||+-..-.. .... ...++|.+++... ..+.+|+||+||
T Consensus 46 ~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~~v~ey~w~l~~~srpgm~YiY~~aiD~~ggr~glAIlSr 125 (271)
T PRK15251 46 NVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGIPIDEYTWNLGTRSRPNQVYIYYSRVDVGANRVNLAIVSR 125 (271)
T ss_pred hHHHHhcCCCCCCEEEEEecCCCccccccccccccccccccCcccEEEEccCccCCCceEEEEecccCCCCceeEEEEec
Confidence 455666654 6999999999641100 0000 0124565444422 245789999999
Q ss_pred ccCCcceeeeccCcCCCCCCCCCcEEEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHH-hcCCCCEEEEcc
Q 023207 62 KCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL-QCSGKPLIWCGD 140 (285)
Q Consensus 62 ~~~~~~~~~~~l~~~~~~~d~~gR~l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~-~~~~~p~Il~GD 140 (285)
.+. .+ .+.++. .......++.++++++.++++|+.+.+.. .+.+.++.+.++.. .....|+|||||
T Consensus 126 ~~a--~~-~~~l~~---p~~~~Rpilgi~i~~~~ffstH~~a~~~~-------da~aiV~~I~~~f~~~~~~~pw~I~GD 192 (271)
T PRK15251 126 RRA--DE-VIVLRP---PTVASRPIIGIRIGNDVFFSIHALANGGT-------DAGAIVRAVHNFFRPNMRHINWMIAGD 192 (271)
T ss_pred ccc--cc-eEEecC---CCCcccceEEEEecCeEEEEeeecCCCCc-------cHHHHHHHHHHHHhhccCCCCEEEecc
Confidence 973 22 232321 11224457778888999999999887532 14566777777765 334579999999
Q ss_pred cCccCCC
Q 023207 141 LNVSHEE 147 (285)
Q Consensus 141 FN~~~~~ 147 (285)
||..+++
T Consensus 193 FNr~P~s 199 (271)
T PRK15251 193 FNRSPDR 199 (271)
T ss_pred CCCCCcc
Confidence 9998864
No 12
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.67 E-value=8.7e-17 Score=136.32 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=65.0
Q ss_pred hhhhhhhcCCCeEEEehhhhhH-hhhcCCC--CCCCceEEEeccCC-----CceeEEEEEeccCCcceeeeccCcCCCCC
Q 023207 9 APKNHQELKDDTKASREEKLIL-MRALSSP--PFKNYQIWWSLADS-----KYAGTALLVKKCFQPKKVSFSLEKTALKY 80 (285)
Q Consensus 9 ~~~~l~~~~~DIv~LQE~~~~~-~~~l~~~--~~~gy~~~~~~~~~-----~~~GvaIlsr~~~~~~~~~~~l~~~~~~~ 80 (285)
+.++|+.++||||||||+.... ...+... ...++......+.. +..|++|++|.++.... ...... .
T Consensus 21 i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~-~~~~~~----~ 95 (249)
T PF03372_consen 21 IAQWIAELDPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVAILSRSPIFSSV-SYVFSL----F 95 (249)
T ss_dssp HHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEEEEESSCCCEEE-EEEEEE----E
T ss_pred HHHHHHhcCCCEEEEecchhhhhhhhhhhhcccccccccceeccccccccccCceEEEEEcccccccc-cccccc----c
Confidence 8899999999999999998421 1111111 11233333322222 35799999999753211 111110 0
Q ss_pred CCCCc-E----E------EEE--eCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEcccCccCCC
Q 023207 81 EPDGR-V----I------LAE--FETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEE 147 (285)
Q Consensus 81 d~~gR-~----l------~~~--~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~ 147 (285)
..... . . .+. ...+.|+++|+|+... .+.....+++..+..........|+|||||||+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~H~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 96 SKPGIRIFRRSSKSKGIVPVSINGKPITVVNVHLPSSND----ERQEQWRELLARIQKIYADNPNEPVIVMGDFNSRPDS 171 (249)
T ss_dssp SSSTTCEEEEEEEEEEEEEEEEETEEEEEEEEETTSHHH----HHHHHHHHHHHHHHHHHHTSSCCEEEEEEE-SS-BSS
T ss_pred cccccccccccccccccccccccceEEEeeeccccccch----hhhhhhhhhhhhhhhcccccccceEEEEeecccCCcc
Confidence 00111 1 1 111 1268899999987432 1111112333334333332223479999999998764
No 13
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.66 E-value=4e-15 Score=140.42 Aligned_cols=135 Identities=14% Similarity=0.142 Sum_probs=73.8
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhc-CCC-CCCCceEEEeccC--------CCceeEEEEEecc-CCccee-ee----
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRAL-SSP-PFKNYQIWWSLAD--------SKYAGTALLVKKC-FQPKKV-SF---- 71 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l-~~~-~~~gy~~~~~~~~--------~~~~GvaIlsr~~-~~~~~~-~~---- 71 (285)
.+.+.|..++||||||||+.......+ ... ...||..++.... .+..|+|||.|.. ++.++. ..
T Consensus 289 lIl~EI~~~~aDIICLQEV~~~~~~d~~~p~L~~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~ 368 (606)
T PLN03144 289 NLLREIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNK 368 (606)
T ss_pred HHHHHHHhcCCCEEEEeecCHHHHHHHHHhhhhhcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccc
Confidence 477899999999999999965333322 111 1248886665311 1356999999875 433221 01
Q ss_pred -ccC--cCC-C---CCCCCCcE------EE--EEeC-------------CEEEEEEEeeCCCCCcchhhHHHHHHHHHHH
Q 023207 72 -SLE--KTA-L---KYEPDGRV------IL--AEFE-------------TFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 123 (285)
Q Consensus 72 -~l~--~~~-~---~~d~~gR~------l~--~~~~-------------~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l 123 (285)
.+. ... . ..+...|+ +. ++.. .|.|+|+|+-...... . .|..+...|
T Consensus 369 ~~lslt~~~~~s~~~~~~l~Rl~kdNVAliv~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~~-d----vRl~Q~~~L 443 (606)
T PLN03144 369 AAQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKFGNQGADNGGKRQLLCVANTHIHANQELK-D----VKLWQVHTL 443 (606)
T ss_pred hhhccCccccccccchhhhhhhccCcEEEEEEEEEecccccccCCCCccEEEEEEeeeccCCccc-h----hHHHHHHHH
Confidence 010 000 0 00112231 12 2221 2789999994332211 1 244444455
Q ss_pred HHHHHh---cCCCCEEEEcccCccCCC
Q 023207 124 QEFVLQ---CSGKPLIWCGDLNVSHEE 147 (285)
Q Consensus 124 ~~~l~~---~~~~p~Il~GDFN~~~~~ 147 (285)
.+.+++ ..+.|+|||||||+.+++
T Consensus 444 l~~l~~~~~~~~~PvIlcGDFNS~P~S 470 (606)
T PLN03144 444 LKGLEKIAASADIPMLVCGDFNSVPGS 470 (606)
T ss_pred HHHHHHHhhcCCCceEEeccCCCCCCC
Confidence 555543 246899999999998864
No 14
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.63 E-value=7.1e-16 Score=133.37 Aligned_cols=232 Identities=18% Similarity=0.129 Sum_probs=122.6
Q ss_pred ChhhhhhhcCCCeEEEehhhhhH-hhhcCCCCCC--CceEEEeccCCCceeEEEEEeccCCcce-eeeccCcC---CCCC
Q 023207 8 DAPKNHQELKDDTKASREEKLIL-MRALSSPPFK--NYQIWWSLADSKYAGTALLVKKCFQPKK-VSFSLEKT---ALKY 80 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~-~~~l~~~~~~--gy~~~~~~~~~~~~GvaIlsr~~~~~~~-~~~~l~~~---~~~~ 80 (285)
.+-+.+.....||+.|||+.... .+-|.+...+ .|..||.++-- ++|++||||.|+.... ..+.+.+. +---
T Consensus 32 ~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG 110 (422)
T KOG3873|consen 32 AIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYFHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG 110 (422)
T ss_pred HHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHhhhcccc-cCceEEeecCchhhhhhhccccCCccceeeec
Confidence 34567888999999999997531 1223222222 34434443332 6799999999863211 12223221 0001
Q ss_pred C-CCCcEEE---EEeC--CEEEEEEEe--eCCCCCcchhhHHHHHHHHHHHHHHHHh--cCCCCEEEEcccCccCCCCcC
Q 023207 81 E-PDGRVIL---AEFE--TFYLLNTYA--PNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEIDV 150 (285)
Q Consensus 81 d-~~gR~l~---~~~~--~~~v~~vy~--p~~~~~~~~~~~~~r~~~~~~l~~~l~~--~~~~p~Il~GDFN~~~~~~D~ 150 (285)
| ..|+.+- +.++ .+.++|+|+ |.+...+. =...|..+.=++.++++. ..+.-+|++||||..|.+..+
T Consensus 111 DWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~--YL~HR~~QAwdlaqfi~~t~q~~~vVI~~GDLN~~P~dl~~ 188 (422)
T KOG3873|consen 111 DWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDE--YLCHRVAQAWDLAQFIRATRQNADVVILAGDLNMQPQDLGH 188 (422)
T ss_pred cccccceeEEEEEeeCCEEeeeeehhccccccccCch--hhhHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCccccce
Confidence 1 1244332 2333 355666544 55543221 112233333245666654 257889999999998865422
Q ss_pred CChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCc-------------------eee
Q 023207 151 SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD-------------------CGF 211 (285)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~-------------------~~~ 211 (285)
. ++...+|+|+|+..|+..... ..-
T Consensus 189 ~------------------------------------ll~~a~l~daw~~~h~~q~e~~~~r~s~~~~l~~g~tcd~~~N 232 (422)
T KOG3873|consen 189 K------------------------------------LLLSAGLVDAWTSLHLDQCESDSFRLSEDKELVEGNTCDSPLN 232 (422)
T ss_pred e------------------------------------eeeccchhhhHhhhchhhhcCcccccchhhhhhcCCcccCcch
Confidence 1 111223666666655432100 011
Q ss_pred eeeCCCCCCcCCccceEEEEEeChhhHh-hheeeEEccCccccCCCCCCCcccEEEEEeeCCCCchHH
Q 023207 212 SWSGNPIGKYRGKRMRIDYFIVSEELKD-RIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKR 278 (285)
Q Consensus 212 T~~~~~~~~~~~~~~RID~i~~s~~l~~-~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~~~~~~~~ 278 (285)
||.+.........+.||||+|+++.... .+.++++...-.++.....|||.+++++|.+...+...+
T Consensus 233 ~y~~aqk~~ddp~~~RiDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~SDH~Al~a~L~I~~~~~~~~ 300 (422)
T KOG3873|consen 233 CYTSAQKREDDPLGKRIDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSYSDHEALMATLKIFKQPPRSE 300 (422)
T ss_pred hhhHHHhCCCCccceeeeEEEEcCcceEEEeeeEEecCCCCCCCCCCccchhhheeEEEeecCCCCCC
Confidence 2221100000123789999999988642 123334333234455689999999999999875554443
No 15
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=99.58 E-value=1.1e-14 Score=110.89 Aligned_cols=119 Identities=23% Similarity=0.375 Sum_probs=65.8
Q ss_pred EEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEcccCccCCCCcCCChhhhhhhhcCCCCCCCCCCCC
Q 023207 94 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 173 (285)
Q Consensus 94 ~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (285)
++|+|+|+|+... +..+++.|.+++......++||+||||+.+..++....
T Consensus 1 i~i~~vY~pp~~~---------~~~~~~~l~~~~~~~~~~~~Ii~GDFN~~~~~w~~~~~-------------------- 51 (119)
T PF14529_consen 1 ITIISVYAPPSSE---------REEFFDQLRQLLKNLPPAPIIIGGDFNAHHPNWDSSNT-------------------- 51 (119)
T ss_dssp EEEEEEE--TTS----------CHHHHHHHHHHHHCCTTSSEEEEEE-----GGGT-SCH--------------------
T ss_pred CEEEEEECCCCcc---------HHHHHHHHHHHHHhCCCCCEEEEeECCCCchhhhhccc--------------------
Confidence 5799999999872 24567788888875433499999999996544322110
Q ss_pred CCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCcCCccceEEEEEeChhhHhhheeeEEccCcccc
Q 023207 174 QPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 253 (285)
Q Consensus 174 ~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i~~s~~l~~~v~~~~i~~~~~~~ 253 (285)
.....+.|..++...+|.++. +.. ..+||.+... .++||++|++..+... ....+..
T Consensus 52 ----~~~~~~~l~~~~~~~~l~~~~----~~~---~~~T~~~~~~------~s~iD~~~~s~~~~~~-~~~~~~~----- 108 (119)
T PF14529_consen 52 ----NSRRGEQLLDWLDSHNLVDLN----PPG---RPPTFISNSH------GSRIDLILTSDNLLSW-CVWVISS----- 108 (119)
T ss_dssp ----HHHHHHHHHHHHHHCTEEE-------TT------SEEECCC------EE--EEEEEECCGCCC-EEEEEET-----
T ss_pred ----cchhHHHHHHHhhhceeeeee----cCC---CCCcccCCCC------CceEEEEEECChHHhc-CcEEEeC-----
Confidence 002445677777777788772 222 3588876422 5899999999998754 1222222
Q ss_pred CCCCCCCcccEE
Q 023207 254 EGFYGSDHCPVS 265 (285)
Q Consensus 254 ~~~~~SDH~PV~ 265 (285)
....|||+||+
T Consensus 109 -~~~~SDH~~I~ 119 (119)
T PF14529_consen 109 -DDSGSDHCPIT 119 (119)
T ss_dssp -TSSSSSB--EE
T ss_pred -CCCCCCccCCC
Confidence 36889999985
No 16
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.51 E-value=1.1e-13 Score=119.13 Aligned_cols=198 Identities=15% Similarity=0.047 Sum_probs=109.3
Q ss_pred hhhhhhhcCCCeEEEehhhhhHhhhcCCCCCCCceEEEecc-CCCceeEEEEEeccCCcceeeeccCcCCCCCCCCCcEE
Q 023207 9 APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVI 87 (285)
Q Consensus 9 ~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~~gy~~~~~~~-~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~gR~l 87 (285)
...++...++|+|.+||+...+..... .....|.++.... ..+..|++++||.+-.+......+ .....++++
T Consensus 106 ~Lsl~~~~~~D~v~~~E~~~~~~~~~~-~l~~~yP~~~~~~~~~~~~~~a~~sr~~~~~~~~~e~~-----~~~pk~~~~ 179 (309)
T COG3021 106 LLSLIQQLDADAVTTPEGVQLWTAKVG-ALAAQYPAFILCQHPTGVFTLAILSRRPCCPLTEAEPW-----LRLPKSALA 179 (309)
T ss_pred HHHHHhhhCcchhhhHHHHHHhHhHHH-HHHHhCCceeecCCCCCeeeeeeccccccccccccCcc-----ccCCcccee
Confidence 456677788999999999875544331 1123555333322 336778999998851121111111 122345555
Q ss_pred EEEe----CCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEcccCccCCCCcCCChhhhhhhhcCC
Q 023207 88 LAEF----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 163 (285)
Q Consensus 88 ~~~~----~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~~ 163 (285)
.+.. ..+.++++|..+..... ..+| +++..|.+.+.. -..|+|++||||+.+-+.
T Consensus 180 t~~~~~~g~~l~v~~lh~~~~~~~~----~~~~-~ql~~l~~~i~~-~~gpvIlaGDfNa~pWS~--------------- 238 (309)
T COG3021 180 TAYPLPDGTELTVVALHAVNFPVGT----DPQR-AQLLELGDQIAG-HSGPVILAGDFNAPPWSR--------------- 238 (309)
T ss_pred EEEEcCCCCEEEEEeeccccccCCc----cHHH-HHHHHHHHHHHc-CCCCeEEeecCCCcchhH---------------
Confidence 5433 26889999987543322 1234 444556555553 358999999999976210
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCcCCccceEEEEEeChhhHhhhee
Q 023207 164 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIA 243 (285)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i~~s~~l~~~v~~ 243 (285)
..+++..-+ ..+.+....-. ..-|++... .+ -.+.+|||||++. +. +..
T Consensus 239 --------------------~~~R~~~l~-~~~~~~~aG~~----~~~~~p~~~-~r--~~g~PIDhvf~rg-l~--~~k 287 (309)
T COG3021 239 --------------------TAKRMAALG-GLRAAPRAGLW----EVRFTPDER-RR--AFGLPIDHVFYRG-LT--VMK 287 (309)
T ss_pred --------------------HHHHHHHhc-ccccchhccCC----ccccCHHHH-hh--ccCCCcceeeecC-cc--hhh
Confidence 011111111 12332222111 112222211 11 1367899999998 43 556
Q ss_pred eEEccCccccCCCCCCCcccEEEEEeeC
Q 023207 244 CEMQGHGIELEGFYGSDHCPVSLELSEA 271 (285)
Q Consensus 244 ~~i~~~~~~~~~~~~SDH~PV~~~l~~~ 271 (285)
+.... ..+|||+||+++|...
T Consensus 288 a~rl~-------~~gSDH~PLLveF~~~ 308 (309)
T COG3021 288 ARRLP-------DRGSDHRPLLVEFSYG 308 (309)
T ss_pred hhhcc-------ccCCCCCceEEEEEec
Confidence 66654 4899999999999864
No 17
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.47 E-value=2.2e-13 Score=113.73 Aligned_cols=213 Identities=17% Similarity=0.223 Sum_probs=119.0
Q ss_pred hhhhhhhcCCCeEEEehhhhhHhhhcCCCCCCCceEEEeccCCCceeEEEEEeccCCccee-eeccCcCCCCCCCCCcEE
Q 023207 9 APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV-SFSLEKTALKYEPDGRVI 87 (285)
Q Consensus 9 ~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~~gy~~~~~~~~~~~~GvaIlsr~~~~~~~~-~~~l~~~~~~~d~~gR~l 87 (285)
+..+|+-+.|||||||||..+...-+.+ ...-|..+.. ...+++|.+++.+..+...+. ...++ ...-+|-+
T Consensus 122 v~H~i~l~sPdiiflQEV~p~~y~~~~K-~~s~y~i~~~-~~~~~~~~~~l~~s~~~Vks~~~i~F~-----NS~M~R~L 194 (349)
T KOG2756|consen 122 VCHYLALYSPDVIFLQEVIPPYYSYLKK-RSSNYEIITG-HEEGYFTAIMLKKSRVKVKSQEIIPFP-----NSKMMRNL 194 (349)
T ss_pred HHHHHHhcCCCEEEEeecCchhhHHHHH-hhhheeEEEe-ccceeeeeeeeehhhcCccccceeccC-----cchhhhee
Confidence 3467899999999999998754443332 2234555554 345677888887665422111 11121 11234533
Q ss_pred ---EEEeC--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEcccCccCCCCcCCChhhhhhhhcC
Q 023207 88 ---LAEFE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162 (285)
Q Consensus 88 ---~~~~~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~ 162 (285)
.+.+. .+.+.+.|+-+..... .++..+=...++...+.|...++..||.+||.|-.-...
T Consensus 195 ~I~Ev~v~G~Kl~l~tsHLEStr~h~-P~r~~qF~~~~~k~~EaIe~lPnA~ViFGGD~NlrD~ev-------------- 259 (349)
T KOG2756|consen 195 LIVEVNVSGNKLCLMTSHLESTRGHA-PERMNQFKMVLKKMQEAIESLPNATVIFGGDTNLRDREV-------------- 259 (349)
T ss_pred EEEEEeecCceEEEEeccccCCCCCC-hHHHHHHHHHHHHHHHHHHhCCCceEEEcCcccchhhhc--------------
Confidence 23443 5888899996654321 111110012234556666656889999999999843211
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccC-CCCCCceeeeeeCCCCCC---cCCccceEEEEEeChhhH
Q 023207 163 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFSWSGNPIGK---YRGKRMRIDYFIVSEELK 238 (285)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~-p~~~~~~~~T~~~~~~~~---~~~~~~RID~i~~s~~l~ 238 (285)
+..+ +..+ ++|+|..+. |+. ..|||.+..+.. +...+.|+|+||..-+-.
T Consensus 260 ----------~r~~------------lPD~-~vDvWE~lg~p~~---~~FTwDT~~N~nl~G~~a~k~RfDRi~~r~~~~ 313 (349)
T KOG2756|consen 260 ----------TRCG------------LPDN-IVDVWEFLGKPKH---CQFTWDTQMNSNLGGTAACKLRFDRIFFRAAAE 313 (349)
T ss_pred ----------ccCC------------CCch-HHHHHHHhCCCCc---CceeeecccCcccchhHHHHHHHHHHhhhhhhh
Confidence 0001 2333 899998776 555 579998754432 234568999999843311
Q ss_pred -hh--heeeEEccC-ccccCCCCCCCcccEEEEEe
Q 023207 239 -DR--IIACEMQGH-GIELEGFYGSDHCPVSLELS 269 (285)
Q Consensus 239 -~~--v~~~~i~~~-~~~~~~~~~SDH~PV~~~l~ 269 (285)
.. ......... ....-.+.+|||.++.++|.
T Consensus 314 ~G~~~~~~l~l~g~~kiRgc~~fPSDHwgll~Tl~ 348 (349)
T KOG2756|consen 314 EGHIIPRSLDLLGLEKLRGCGRFPSDHWGLLCTLD 348 (349)
T ss_pred cCCcCccccchhhhhhhccCCCCCcccceeeeecc
Confidence 00 111111100 00011378999999999986
No 18
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.23 E-value=3.3e-10 Score=98.22 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=66.6
Q ss_pred hhhhhhhcCCCeEEEehhhhhHhh-------hcCCCCCCCceEEEeccC--CC-ceeEEEEEecc-CCcceeeeccCcCC
Q 023207 9 APKNHQELKDDTKASREEKLILMR-------ALSSPPFKNYQIWWSLAD--SK-YAGTALLVKKC-FQPKKVSFSLEKTA 77 (285)
Q Consensus 9 ~~~~l~~~~~DIv~LQE~~~~~~~-------~l~~~~~~gy~~~~~~~~--~~-~~GvaIlsr~~-~~~~~~~~~l~~~~ 77 (285)
+.++|+ +||||++||+...... .+......+|.++.+... .+ ..-.|++.|.. ++... ...++...
T Consensus 42 i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~-~~~f~d~~ 118 (276)
T smart00476 42 IVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLD-SYLYDDGC 118 (276)
T ss_pred HHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCCceEEecCCCCCCCCCEEEEEEEecceEEEcc-cceecCCC
Confidence 344455 8999999999753222 222222247887776421 11 23478998875 22111 11222100
Q ss_pred C-CCCCCCcEE-EEEe-------CCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEcccCccCC
Q 023207 78 L-KYEPDGRVI-LAEF-------ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHE 146 (285)
Q Consensus 78 ~-~~d~~gR~l-~~~~-------~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~ 146 (285)
. ..+.-.|.. .+.| ..|.++++|+.+.... ++-...++-+.+..++....++|+|||||+..+
T Consensus 119 ~~~~~~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~~~~------~e~~aL~~v~~~~~~~~~~~~villGDFNa~~~ 190 (276)
T smart00476 119 ECGNDVFSREPFVVKFSSPSTAVKEFVIVPLHTTPEAAV------AEIDALYDVYLDVRQKWGTEDVIFMGDFNAGCS 190 (276)
T ss_pred CCccccccccceEEEEEeCCCCCccEEEEEecCChHHHH------HHHHHHHHHHHHHHHhhccCCEEEEccCCCCCC
Confidence 0 112223422 2333 1699999999664321 111111222333333335789999999999653
No 19
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.01 E-value=1.5e-09 Score=98.43 Aligned_cols=137 Identities=18% Similarity=0.185 Sum_probs=76.2
Q ss_pred CCChhhhhhhcCCCeEEEehhhhhHhhhcCCC--CCCCceEEEeccC-CCceeEEEEEecc-CCcce---eeeccCcC-C
Q 023207 6 SKDAPKNHQELKDDTKASREEKLILMRALSSP--PFKNYQIWWSLAD-SKYAGTALLVKKC-FQPKK---VSFSLEKT-A 77 (285)
Q Consensus 6 ~~~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~--~~~gy~~~~~~~~-~~~~GvaIlsr~~-~~~~~---~~~~l~~~-~ 77 (285)
.++++..|+.++|||+|||||......+.-+. ...||..++-... .+..|+||+++.. ++.+. +.+-.... .
T Consensus 151 ~~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l 230 (495)
T KOG2338|consen 151 SQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFFKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSAL 230 (495)
T ss_pred hHHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceEEEEeccCCCCceEEEEEecccceecccchhhcccccchh
Confidence 35688899999999999999985422211111 1358976554333 4578999999874 21110 11100000 0
Q ss_pred CCCCCCCcEEEEEeC-------CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh----c-CCCCEEEEcccCccC
Q 023207 78 LKYEPDGRVILAEFE-------TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ----C-SGKPLIWCGDLNVSH 145 (285)
Q Consensus 78 ~~~d~~gR~l~~~~~-------~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~----~-~~~p~Il~GDFN~~~ 145 (285)
...+--+-++.+.+. ++.|.|+|+-....... .|+.+...|.+.+++ . ..-|+|+|||||+.+
T Consensus 231 ~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~-----vrL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p 305 (495)
T KOG2338|consen 231 ANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSD-----VRLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEP 305 (495)
T ss_pred hcccceeEEEEEEecccCcccCceEEEeeeeeecCcccc-----hhhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCC
Confidence 000111224444541 68999999854432111 144444444444443 1 256999999999988
Q ss_pred CC
Q 023207 146 EE 147 (285)
Q Consensus 146 ~~ 147 (285)
++
T Consensus 306 ~~ 307 (495)
T KOG2338|consen 306 DS 307 (495)
T ss_pred CC
Confidence 63
No 20
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.96 E-value=2e-08 Score=89.17 Aligned_cols=133 Identities=15% Similarity=0.106 Sum_probs=73.7
Q ss_pred CCChhhhhhh-------cCCCe--EEEehhhh---------------hHhhhcCCCCC--CCceEEEeccCCCceeEEEE
Q 023207 6 SKDAPKNHQE-------LKDDT--KASREEKL---------------ILMRALSSPPF--KNYQIWWSLADSKYAGTALL 59 (285)
Q Consensus 6 ~~~~~~~l~~-------~~~DI--v~LQE~~~---------------~~~~~l~~~~~--~gy~~~~~~~~~~~~GvaIl 59 (285)
..++..||.. ..||| |+|||+.. .+...+...+. ..|....+. .-+.-++.|+
T Consensus 20 ~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~~~~~Y~~v~~~-~l~gi~l~vf 98 (310)
T smart00128 20 KVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGDGQYNVLAKV-RLVGILVLVF 98 (310)
T ss_pred hhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhccchhHHHHHHHHHHhcCCCCceEEEeee-eecceEEEEE
Confidence 3566677765 67999 77999821 11111211122 345544331 2234467888
Q ss_pred EeccCCc-c------eeeeccCcCCCCCCCCCcEEEEEeC--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh-
Q 023207 60 VKKCFQP-K------KVSFSLEKTALKYEPDGRVILAEFE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ- 129 (285)
Q Consensus 60 sr~~~~~-~------~~~~~l~~~~~~~d~~gR~l~~~~~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~- 129 (285)
+|..+.+ + .+..++.+ ......+.++.+.+. .+.++++|++++... .+.|.+-+..|.+.+.-
T Consensus 99 ~~~~~~~~i~~v~~~~v~~G~~~--~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~-----~~~R~~~~~~I~~~~~f~ 171 (310)
T smart00128 99 VKANHLVYIKDVETFTVKTGMGG--LWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN-----VEQRNQDYKTILRALSFP 171 (310)
T ss_pred EehhhcCccceeEeeeeeccccc--eeecCceEEEEEEEcCcEEEEEeeccccccch-----hhhhHHHHHHHHHhcCCC
Confidence 8876421 1 11223221 112234445556665 499999999997642 22455555555443321
Q ss_pred -------cCCCCEEEEcccCccCC
Q 023207 130 -------CSGKPLIWCGDLNVSHE 146 (285)
Q Consensus 130 -------~~~~p~Il~GDFN~~~~ 146 (285)
.....+|++||||-..+
T Consensus 172 ~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 172 ERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred CCccccccccceEEEecCcceeec
Confidence 13578999999999765
No 21
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=98.73 E-value=1e-07 Score=83.43 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=37.1
Q ss_pred CChhhhhhhcCCCeEEEehhhhhHhhhcCCC--CCCCceEEEeccCC-----------CceeEEEEEec
Q 023207 7 KDAPKNHQELKDDTKASREEKLILMRALSSP--PFKNYQIWWSLADS-----------KYAGTALLVKK 62 (285)
Q Consensus 7 ~~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~--~~~gy~~~~~~~~~-----------~~~GvaIlsr~ 62 (285)
+.+++.|..+++||+||||+........=+. ...||...+..... .--|++|+.+.
T Consensus 63 ~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~~k~~~m~~~d~t~~dGc~if~k~ 131 (378)
T COG5239 63 RLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKERKVKWMIDYDTTKVDGCAIFLKR 131 (378)
T ss_pred HHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEecCCCcccccccccccccceEEEEEEe
Confidence 4578889999999999999986432221111 13589866553221 34599999887
No 22
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=98.57 E-value=3.8e-07 Score=82.04 Aligned_cols=55 Identities=15% Similarity=0.046 Sum_probs=36.3
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCC-CCCCceEEEec-------cCCCceeEEEEEecc
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSP-PFKNYQIWWSL-------ADSKYAGTALLVKKC 63 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~-~~~gy~~~~~~-------~~~~~~GvaIlsr~~ 63 (285)
.+++.|...+||++||||+.. ..+-+... ...||...+.. ..+...|.||+.|..
T Consensus 54 ~~~~ei~~~~ad~icLqev~~-~~~~~~p~l~~~gY~g~~~~k~~~~~~~~~~~dGcaiffk~s 116 (361)
T KOG0620|consen 54 LLLEEILNYNADILCLQEVDR-YHDFFSPELEASGYSGIFIEKTRMGEVELEKIDGCAIFFKPS 116 (361)
T ss_pred HHHHHHhCCCcceeecchhhH-HHHHccchhhhcCCcceeecccccchhhcccCceeeeeecch
Confidence 466778888999999999932 22222111 12399877764 134478999998765
No 23
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=97.77 E-value=7.1e-05 Score=71.67 Aligned_cols=136 Identities=20% Similarity=0.253 Sum_probs=82.0
Q ss_pred CEEEEEEEeeCCCCCc--------chhhH-HHHHHHHHHHHHHHHhc----CCCCEEEEcccCccCCCCcCCChhhhhhh
Q 023207 93 TFYLLNTYAPNNGWKE--------EENSF-QRRRKWDKRIQEFVLQC----SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 159 (285)
Q Consensus 93 ~~~v~~vy~p~~~~~~--------~~~~~-~~r~~~~~~l~~~l~~~----~~~p~Il~GDFN~~~~~~D~~~~~~~~~~ 159 (285)
.|+++.-|+-+.+... .-..+ ..|.+..++|..++... ...+++|+||||+-... | +
T Consensus 622 kfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~~~d~~~viLGD~N~y~~e-d---p------ 691 (798)
T COG2374 622 KFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTGKADADIVILGDFNDYAFE-D---P------ 691 (798)
T ss_pred EEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCcccccCCCEEEEeccchhhhc-c---H------
Confidence 5777777885543210 00011 13566677888888752 46899999999994321 1 1
Q ss_pred hcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCcCCccceEEEEEeChhhHh
Q 023207 160 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKD 239 (285)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i~~s~~l~~ 239 (285)
++.+-..| +...-..+++.. ..|||.-. +.-..|||+|+|.++..
T Consensus 692 -------------------------I~~l~~aG-y~~l~~~~~~~~---~~YSY~f~------G~~gtLDhaLas~sl~~ 736 (798)
T COG2374 692 -------------------------IQALEGAG-YMNLAARFHDAG---DRYSYVFN------GQSGTLDHALASASLAA 736 (798)
T ss_pred -------------------------HHHHhhcC-chhhhhhccCCC---CceEEEEC------CccchHhhhhhhhhhhh
Confidence 23322223 444333344433 35777431 11257999999999998
Q ss_pred hheeeEEccCccc---------------------cCCCCCCCcccEEEEEeeCCC
Q 023207 240 RIIACEMQGHGIE---------------------LEGFYGSDHCPVSLELSEASS 273 (285)
Q Consensus 240 ~v~~~~i~~~~~~---------------------~~~~~~SDH~PV~~~l~~~~~ 273 (285)
++..+..++...+ ......|||-||++.|.+...
T Consensus 737 ~v~~a~ewHINAdE~~~ldYn~~Fk~q~~~~~~~~~~fR~SDHDPvvvglnL~~~ 791 (798)
T COG2374 737 QVSGATEWHINADEPDALDYNLEFKGQNVSLYKTTNPFRASDHDPVVVGLNLLGT 791 (798)
T ss_pred hccCceeeeecccccchhhhhhhhccccccccccCCccccCCCCCeEEEEEeccc
Confidence 8887766642110 022468999999999998643
No 24
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00021 Score=69.93 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=31.5
Q ss_pred CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh------cCCCCEEEEcccCccCC
Q 023207 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ------CSGKPLIWCGDLNVSHE 146 (285)
Q Consensus 93 ~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~------~~~~p~Il~GDFN~~~~ 146 (285)
.+.+++.|+-++.... ++|..-+..|.+-|.= ....-+++|||||-..+
T Consensus 674 sfCFv~SHlAAG~snv-----~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYRI~ 728 (1080)
T KOG0566|consen 674 SFCFVCSHLAAGQSNV-----EERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYRID 728 (1080)
T ss_pred cEEEEecccccccchH-----hhhhhhHHHHHHhccccCCccccCCceEEEecccceeec
Confidence 6889999998877532 2344334445443321 14577999999998654
No 25
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=97.52 E-value=0.0021 Score=60.92 Aligned_cols=48 Identities=19% Similarity=0.029 Sum_probs=29.0
Q ss_pred cceEEEEEeChhhHhhheeeEEccCccccCCCCCCCcccEEEEEeeCCCCchHHhh
Q 023207 225 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREK 280 (285)
Q Consensus 225 ~~RID~i~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~~~~~~~~~~ 280 (285)
++=.|+||....- +.-..... .....|||.||.+.|.+....-.++|.
T Consensus 554 PSWCDRILykg~~---i~~l~Y~s-----~ei~~SDHRPV~A~F~v~V~~id~~k~ 601 (621)
T PLN03191 554 PAWCDRILWLGKG---IKQLCYKR-----SEIRLSDHRPVSSMFLVEVEVFDHRKL 601 (621)
T ss_pred cchhheEeecCCC---ceEeEecc-----CCcccCCchhcceEEEEEEEecCHHHH
Confidence 3447999986431 22112222 136889999999998887554444443
No 26
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=96.81 E-value=0.0046 Score=56.15 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=29.6
Q ss_pred EEEEeChhhHhhheeeEEccCccccCCCCCCCcccEEEEEeeCCCCchHHhhhcC
Q 023207 229 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKKNL 283 (285)
Q Consensus 229 D~i~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~~~~~~~~~~~~~ 283 (285)
|+||+.+..... ...+-.+ ....|||.||++.+...-.--...+|.++
T Consensus 292 DRIl~~s~~~~p-~sY~sip------~l~~SDHrPV~a~~~~~i~~~d~~~k~~~ 339 (460)
T COG5411 292 DRILYKSEQLTP-HSYSSIP------HLMISDHRPVYATFRAKIKVVDPSKKEGL 339 (460)
T ss_pred hhhhhhcccccc-ccccccC------ceeecCCCeEEEEEecceEEeCcchhhhh
Confidence 999998763211 1122222 15889999999999876544444444443
No 27
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=92.14 E-value=0.77 Score=41.16 Aligned_cols=152 Identities=24% Similarity=0.314 Sum_probs=78.8
Q ss_pred CCCCCcEEEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh--cCCCCEEEEcccCccCCCCcCCChhhhh
Q 023207 80 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEIDVSHPEFFA 157 (285)
Q Consensus 80 ~d~~gR~l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~--~~~~p~Il~GDFN~~~~~~D~~~~~~~~ 157 (285)
.+.+||++..+...+.+++||.|....... . .+..|+..+....+. ..+.++++ |..+..++..+. +.
T Consensus 9 ~~~~~~~~~~~k~~~~~~~v~~~~~~~e~~-~---~~~~~~~~l~~r~~~~~~~g~~~~~----~i~~~~i~~~~~--~~ 78 (335)
T KOG1294|consen 9 LDSEGRCVIVDKEMFVLINVYCPRNSPEIS-K---RRLRFAKVLHYRVEKLLKQGNRKVL----NICPWDIAGLEA--CE 78 (335)
T ss_pred hhccCCeeeeecccccccceeccccCCcch-h---hhhhhhhHHHHHHHHHHHhCCeeEe----ecCchhhhhhhh--hh
Confidence 456899999888889999999998775321 1 144555544444433 25677777 665543322111 10
Q ss_pred hhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeee--eCCCCCCcCCccceEEEEEeCh
Q 023207 158 AAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSE 235 (285)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~--~~~~~~~~~~~~~RID~i~~s~ 235 (285)
. ..++ .....+.++ +..+....-.+|..+..+|.. ..||. ++-.. +..+...++||+.+.+
T Consensus 79 ~--~~~~----------~~~~~~l~d-~~~~~~t~~~i~~~~~~~~~~---~~~~~~~~~~~~-~~~~y~~~~~~~~~~p 141 (335)
T KOG1294|consen 79 K--FSGD----------PEISSELRD-LQCLLETKCTIDSGPCSHPTE---KGYTHSLLSCAS-KKDGYSGEIDYSKFKP 141 (335)
T ss_pred c--cccc----------hhccccchh-hhhhhhccceeccCcceeccc---CCcccceeeccc-ccCCccceeeeeeccc
Confidence 0 0000 001111122 222233332377777777765 35653 32111 1124467888888765
Q ss_pred hhHhhheeeEEccCccccCCCCCCCcccEEEEEee
Q 023207 236 ELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270 (285)
Q Consensus 236 ~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 270 (285)
-.. .... +...|||+|+...+..
T Consensus 142 ~~v------~~~~------~~~~s~h~~~g~~i~~ 164 (335)
T KOG1294|consen 142 LKV------HYGF------GAMGSDHRPVGRVIIA 164 (335)
T ss_pred cee------eecc------cccCCccCccceEEEE
Confidence 321 1111 1358999998776543
No 28
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=86.88 E-value=3.8 Score=35.88 Aligned_cols=55 Identities=20% Similarity=0.140 Sum_probs=30.3
Q ss_pred CEEEEEEEeeCCCCCcc----hhh--HHHHHHHHHHHHHHHHh--cCCCCEEEEcccCccCCC
Q 023207 93 TFYLLNTYAPNNGWKEE----ENS--FQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEE 147 (285)
Q Consensus 93 ~~~v~~vy~p~~~~~~~----~~~--~~~r~~~~~~l~~~l~~--~~~~p~Il~GDFN~~~~~ 147 (285)
.+.++|+|+-+....-+ ++. ...|.+-+..+.+.+.. ....++++.||||-..+.
T Consensus 81 ~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld~ 143 (356)
T PTZ00312 81 VVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLDG 143 (356)
T ss_pred EEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeeecc
Confidence 58899999976543110 000 01222222222222222 357899999999997653
No 29
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=73.98 E-value=2.2 Score=39.91 Aligned_cols=46 Identities=30% Similarity=0.373 Sum_probs=28.7
Q ss_pred cceEEEEEeChhhHhh---------heee----------EEccCccccCCCCCCCcccEEEEEee
Q 023207 225 RMRIDYFIVSEELKDR---------IIAC----------EMQGHGIELEGFYGSDHCPVSLELSE 270 (285)
Q Consensus 225 ~~RID~i~~s~~l~~~---------v~~~----------~i~~~~~~~~~~~~SDH~PV~~~l~~ 270 (285)
+.-+||||+++..... ...+ +....+.+..+.++|||..+++.|.+
T Consensus 429 ~g~~dyif~~~~~~~~~~~~~~~~~~ikl~~~l~ip~~~e~~k~~~p~~~~~~SDH~aL~~~~~~ 493 (495)
T KOG2338|consen 429 KGTLDYIFYSPGDCKQSNREFEEDEAIKLKGLLRIPSPQEMWKAGQPPNGRYGSDHIALVAQFSL 493 (495)
T ss_pred ccceeeEEeccCcccccchhhhcccceeEEEEecCCCHHHhhccCCCCCCCCcccceEeeEeeEe
Confidence 4579999999872210 0011 11122333445899999999999976
No 30
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=25.93 E-value=72 Score=29.02 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=29.1
Q ss_pred CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc-CCCCEEEEcccCccCCC
Q 023207 93 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 147 (285)
Q Consensus 93 ~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~p~Il~GDFN~~~~~ 147 (285)
.+-++..|+-.++.. + |. .|.++....++. ...-+|-.||||++++.
T Consensus 45 tvgfFHPYCNAGGGG-E------rV-LW~Avr~~q~k~~n~~~viYsGD~n~t~~~ 92 (465)
T KOG1387|consen 45 TVGFFHPYCNAGGGG-E------RV-LWKAVRITQRKFPNNVIVIYSGDFNVTPEN 92 (465)
T ss_pred EEEEecccccCCCCc-c------ee-hhHHHHHHHHhCCCceEEEEeCCCCCCHHH
Confidence 456677788777653 2 22 334554444443 34668889999998753
No 31
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=25.30 E-value=88 Score=22.75 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=13.9
Q ss_pred HHHHHHHhcCCCCEEEEcc
Q 023207 122 RIQEFVLQCSGKPLIWCGD 140 (285)
Q Consensus 122 ~l~~~l~~~~~~p~Il~GD 140 (285)
.|.+++...+..++|+.||
T Consensus 54 ~i~~i~~~fP~~kfiLIGD 72 (100)
T PF09949_consen 54 NIERILRDFPERKFILIGD 72 (100)
T ss_pred HHHHHHHHCCCCcEEEEee
Confidence 3444455567899999999
No 32
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=25.08 E-value=94 Score=24.67 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcccC
Q 023207 118 KWDKRIQEFVLQCSGKPLIWCGDLN 142 (285)
Q Consensus 118 ~~~~~l~~~l~~~~~~p~Il~GDFN 142 (285)
+.++.+.+.+.+.....+|++||+=
T Consensus 28 ~~~~~l~~~~~~~~~d~lii~GDl~ 52 (172)
T cd07391 28 DTLERLDRLIEEYGPERLIILGDLK 52 (172)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccc
Confidence 3455666666655668899999954
Done!