Query 023207
Match_columns 285
No_of_seqs 188 out of 1295
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 18:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 2.1E-38 7.4E-43 273.8 20.9 235 8-274 21-261 (265)
2 2j63_A AP-endonuclease; base e 100.0 5E-37 1.7E-41 284.2 24.0 239 7-270 169-466 (467)
3 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 1.5E-34 5.1E-39 247.9 22.2 234 8-270 18-257 (257)
4 2jc5_A Exodeoxyribonuclease; h 100.0 1.3E-34 4.4E-39 248.2 19.5 233 8-271 19-257 (259)
5 2jc4_A Exodeoxyribonuclease II 100.0 3.2E-34 1.1E-38 245.3 20.9 236 8-270 17-256 (256)
6 1hd7_A DNA-(apurinic or apyrim 100.0 1.2E-34 4E-39 257.2 18.1 232 8-270 79-318 (318)
7 2o3h_A DNA-(apurinic or apyrim 100.0 7.9E-34 2.7E-38 247.4 20.7 232 8-270 46-285 (285)
8 1vyb_A ORF2 contains A reverse 100.0 9.5E-33 3.2E-37 233.5 18.0 208 8-269 26-238 (238)
9 1ako_A Exonuclease III; AP-end 100.0 5.4E-33 1.9E-37 239.3 16.2 238 8-269 17-267 (268)
10 2ei9_A Non-LTR retrotransposon 100.0 3.1E-29 1.1E-33 213.8 12.8 195 9-272 25-221 (240)
11 1wdu_A TRAS1 ORF2P; four-layer 100.0 4.6E-27 1.6E-31 200.5 19.0 204 7-271 35-244 (245)
12 4gew_A 5'-tyrosyl-DNA phosphod 99.9 2.1E-27 7.2E-32 214.1 15.9 208 8-269 141-361 (362)
13 4fva_A 5'-tyrosyl-DNA phosphod 99.9 2.4E-26 8.2E-31 195.6 16.9 208 8-269 35-255 (256)
14 3teb_A Endonuclease/exonucleas 99.9 4.8E-26 1.6E-30 195.5 16.3 213 8-270 25-266 (266)
15 3l1w_A Uncharacterized protein 99.9 2.8E-25 9.5E-30 190.3 15.8 211 9-273 27-254 (257)
16 4gz1_A Tyrosyl-DNA phosphodies 99.9 1.8E-24 6.2E-29 183.8 15.0 214 8-270 31-254 (256)
17 4f1h_A Tyrosyl-DNA phosphodies 99.9 2E-24 6.8E-29 181.7 14.6 212 8-269 25-249 (250)
18 3g6s_A Putative endonuclease/e 99.9 1.8E-24 6.1E-29 186.4 14.4 214 8-272 29-262 (267)
19 3mpr_A Putative endonuclease/e 99.9 1.5E-23 5.1E-28 183.9 14.2 215 8-272 34-291 (298)
20 1zwx_A SMCL, sphingomyelinase- 99.9 2E-22 7E-27 176.3 12.6 215 12-270 41-300 (301)
21 2ddr_A Sphingomyelin phosphodi 99.8 3.9E-21 1.3E-25 168.4 12.3 221 12-270 40-305 (306)
22 3i41_A Beta-hemolysin; beta to 99.8 7.4E-20 2.5E-24 161.9 15.0 133 10-146 58-220 (317)
23 4b8c_D Glucose-repressible alc 99.8 1.1E-19 3.7E-24 177.6 4.0 238 8-279 429-726 (727)
24 1sr4_B CDT B, cytolethal diste 99.7 2E-17 6.9E-22 140.3 13.6 126 8-145 26-182 (261)
25 2f1n_A CDT B, cytolethal diste 99.7 2.5E-17 8.7E-22 138.2 13.4 127 8-147 37-192 (262)
26 3ngq_A CCR4-NOT transcription 99.7 2.9E-16 9.8E-21 142.3 15.2 135 8-147 66-260 (398)
27 2a40_B Deoxyribonuclease-1; WA 99.6 3.7E-15 1.3E-19 127.8 14.2 129 10-146 22-174 (260)
28 1i9z_A Synaptojanin, phosphati 99.5 3.7E-13 1.3E-17 119.8 13.7 131 6-146 40-213 (347)
29 2imq_X Salivary nitrophorin; f 99.4 8.2E-14 2.8E-18 121.0 6.1 130 6-146 22-177 (282)
30 2xsw_A 72 kDa inositol polypho 99.1 3.9E-10 1.3E-14 100.6 12.6 131 6-146 42-210 (357)
31 3mtc_A Type II inositol-1,4,5- 98.8 6.1E-08 2.1E-12 84.4 14.2 132 6-146 23-196 (313)
32 4a9c_A Phosphatidylinositol-3, 98.6 1.4E-06 4.9E-11 75.9 14.5 132 6-146 23-197 (316)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=2.1e-38 Score=273.81 Aligned_cols=235 Identities=27% Similarity=0.480 Sum_probs=181.5
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCC--CCCCceEEEecc-CCCceeEEEEEeccCCcceeeeccCcCCCCCCCCC
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSP--PFKNYQIWWSLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDG 84 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~--~~~gy~~~~~~~-~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~g 84 (285)
++.++|++.+|||||||||+... ..+... ...||..++... ..+++|||||+|.++ ..+..++.. ...+.++
T Consensus 21 ~l~~~i~~~~~DIv~LQEt~~~~-~~~~~~~~~~~gy~~~~~~~~~~~~~Gvail~k~~~--~~~~~~~~~--~~~d~~g 95 (265)
T 3g91_A 21 GFLKWFMEEKPDILCLQEIKAAP-EQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPP--SSLREGFGV--ERFDTEG 95 (265)
T ss_dssp THHHHHHHHCCSEEEEECCCSCG-GGSCHHHHCCTTCEEEEECBSSTTSCCEEEEESSCC--SEEECCCSC--HHHHSBS
T ss_pred hHHHHHHhcCCCEEEEEeccccc-cccChhhhcccCCcEEEccCCCCCcCEEEEEEecCh--HHhccCCCC--cccCCcC
Confidence 68999999999999999998642 222111 136998777643 356789999999863 334443321 1235689
Q ss_pred cEEEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEcccCccCCCCcCCChhhhhhhhcC
Q 023207 85 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162 (285)
Q Consensus 85 R~l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~ 162 (285)
|++.+.+..+.|+|+|+|++... ..++.+|.+|++.|.+++... .+.|+|||||||+.+...|..++..
T Consensus 96 r~i~~~~~~~~i~~vy~p~~~~~--~~~~~~r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~------- 166 (265)
T 3g91_A 96 RIQIADFDDFLLYNIYFPNGAMS--EERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKE------- 166 (265)
T ss_dssp CEEEEECSSCEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGG-------
T ss_pred CEEEEEeCCEEEEEEEecCCCCC--chhHHHHHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhh-------
Confidence 99999999999999999998863 345667889999998888753 3689999999999998888766532
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCc-CCccceEEEEEeChhhHhhh
Q 023207 163 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRI 241 (285)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~-~~~~~RID~i~~s~~l~~~v 241 (285)
+.+..++++.+++++..+++.+ |+|+||..+|.. ..|||++...+.+ .+.++||||||+++.+..++
T Consensus 167 --------~~~~~~~~~~~~~~~~~l~~~g-l~D~~r~~~p~~---~~yT~~~~~~~~~~~~~~~rID~il~s~~~~~~~ 234 (265)
T 3g91_A 167 --------NSNVSGFLPVERAWIDKFIENG-YVDTFRMFNSDP---GQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKV 234 (265)
T ss_dssp --------GTTSTTSCHHHHHHHHHHHHTT-EEETHHHHCCCS---CCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGGGE
T ss_pred --------cCCCCccCHHHHHHHHHHHhcC-cEEeeHhhCCCC---CCCCCcCCCCCccccCceEEEEEEEECHHHHhhh
Confidence 2356788999999999999655 999999999887 4799998654432 35678999999999998889
Q ss_pred eeeEEccCccccCCCCCCCcccEEEEEeeCCCC
Q 023207 242 IACEMQGHGIELEGFYGSDHCPVSLELSEASSD 274 (285)
Q Consensus 242 ~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~~~~ 274 (285)
.++.|... ..+|||+||++++.....+
T Consensus 235 ~~~~i~~~------~~~SDH~Pv~~~~~~~~~~ 261 (265)
T 3g91_A 235 KRSWILSD------VMGSDHCPIGLEIELLEHH 261 (265)
T ss_dssp EEEEECTT------CCSSSBCCEEEEEECCCCC
T ss_pred cEEEEeCC------CCCCCcceEEEEhhhhhhc
Confidence 99999863 4789999999999875444
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=5e-37 Score=284.17 Aligned_cols=239 Identities=24% Similarity=0.349 Sum_probs=173.0
Q ss_pred CChhhhhhhcCCCeEEEehhhhhH--hhhcC-CCCCCCceEEEec--cCCCceeEEEEEeccCCcc----eeeeccCcCC
Q 023207 7 KDAPKNHQELKDDTKASREEKLIL--MRALS-SPPFKNYQIWWSL--ADSKYAGTALLVKKCFQPK----KVSFSLEKTA 77 (285)
Q Consensus 7 ~~~~~~l~~~~~DIv~LQE~~~~~--~~~l~-~~~~~gy~~~~~~--~~~~~~GvaIlsr~~~~~~----~~~~~l~~~~ 77 (285)
..+.++|++++|||||||||+... ..... .....||.+++.. +..+++|||||+|+++.+. ....++....
T Consensus 169 ~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~~~GY~~~~~~~~~~~g~~GVAIlsR~pi~~~~l~~~~~~~~~~p~ 248 (467)
T 2j63_A 169 SALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTRGFALPS 248 (467)
T ss_dssp THHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECCSSSTTSCCEEEEEECCCCCCTSCCEEEESSCCCC
T ss_pred HHHHHHHHHcCCCEEEEEecccchhccchHHHHhhcCCceEEEecccCCCCcceEEEEEeCCccccccceeeeecccccc
Confidence 458999999999999999998521 11100 1124689877764 3456789999999975211 1222332100
Q ss_pred ---------------CCCCCCCcEEEEEe----------CCEEEEEEEeeCCCCCcchhhHHHHH-HHHHHHHHHHHhc-
Q 023207 78 ---------------LKYEPDGRVILAEF----------ETFYLLNTYAPNNGWKEEENSFQRRR-KWDKRIQEFVLQC- 130 (285)
Q Consensus 78 ---------------~~~d~~gR~l~~~~----------~~~~v~~vy~p~~~~~~~~~~~~~r~-~~~~~l~~~l~~~- 130 (285)
...|.++|++.+++ ..|.|+|+|+|++.... .++.+|. .|++.|.+++...
T Consensus 249 ~~~~~~~~gs~~~~~~~~D~egR~I~a~~~~~g~~~~~~~~~~vinvYlP~~~~~~--~r~~~K~~~~~~~L~~~l~~l~ 326 (467)
T 2j63_A 249 EPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGMGL--TRLPYRVQSFDPSMREYLHRLD 326 (467)
T ss_dssp C-----------CCCCCCCTTCCEEEEEECSSCCC----CCEEEEEEECCCCCTTS--TTHHHHHHTHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCCCcEEEEEEEeCCcccccCceEEEEEEECCCCCcch--HHHHHHHHHHHHHHHHHHHHhh
Confidence 12456899999888 57999999999987432 3444565 3556666666532
Q ss_pred -------------------CCCCEEEEcccCccCCCCcCCC---hhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhh
Q 023207 131 -------------------SGKPLIWCGDLNVSHEEIDVSH---PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 188 (285)
Q Consensus 131 -------------------~~~p~Il~GDFN~~~~~~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 188 (285)
.+.|+|||||||+.+...|.++ +..+ .+..+|+++||++|..+
T Consensus 327 ~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~---------------~~~~gf~~~er~~~~~l 391 (467)
T 2j63_A 327 TWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSM---------------QECSGFAPEERMSFRET 391 (467)
T ss_dssp HHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHHH---------------TTSTTSCHHHHHHHHHH
T ss_pred hhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhhc---------------ccccccCHHHHHHHHHH
Confidence 2579999999999998888765 3321 24568999999999998
Q ss_pred hhcCCeeeeeeccCCCCCCceeeeeeCCCCCCc-CCccceEEEEEeChhhHhhheeeEEccCccccCCCCCCCcccEEEE
Q 023207 189 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 267 (285)
Q Consensus 189 l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~-~~~~~RID~i~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~ 267 (285)
+...+|+|+||..+|... ..||||++....+ .+.++||||||+++.+..++.++.|... ..+|||+||+++
T Consensus 392 L~~~gL~DafR~~~p~~~--~~yTw~s~r~~~~~~n~g~RIDyIlvS~~l~~~v~~~~I~~~------~~~SDH~PV~~~ 463 (467)
T 2j63_A 392 MQRTNSVDIFRQLYPQAG--PVYSFWSQRINGRPRNLGWRLDYFVVSSRLASYVVDCFPMPT------VMGSDHCPFQMW 463 (467)
T ss_dssp HHHTTEEEHHHHHCTTBC--SCCSBCCTTTTTTTTTCCBCCEEEEEEGGGGGGEEEEEECTT------CCSSSBCCEEEE
T ss_pred HhhCCCEEehHhhCCCCC--CCccccCCCCCcccCCCCceeEEEEEcHHHHcceeEEEECCC------CCCCCcccEEEE
Confidence 866569999999998642 3699998654332 4668999999999999888999999863 579999999999
Q ss_pred Eee
Q 023207 268 LSE 270 (285)
Q Consensus 268 l~~ 270 (285)
|.+
T Consensus 464 l~~ 466 (467)
T 2j63_A 464 MRH 466 (467)
T ss_dssp EEC
T ss_pred EEc
Confidence 975
No 3
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.5e-34 Score=247.91 Aligned_cols=234 Identities=24% Similarity=0.343 Sum_probs=168.4
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCC--CCCCCceEEEeccCCCceeEEEEEeccCCcceeeeccCcCCCCCCCCCc
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSS--PPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR 85 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~--~~~~gy~~~~~~~~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~gR 85 (285)
.+.++|++++|||||||||+... ..+.. ....||..++. +..+++|+|||||+++. .+...++. ...+ ++|
T Consensus 18 ~i~~~i~~~~~Dii~lQE~~~~~-~~~~~~~~~~~gy~~~~~-~~~~~~G~ailsr~~~~--~~~~~~~~--~~~~-~~r 90 (257)
T 2voa_A 18 IVIPWLKENKPDILCMQETKVEN-RKFPEADFHRIGYHVVFS-GSKGRNGVAIASLEEPE--DVSFGLDS--EPKD-EDR 90 (257)
T ss_dssp HHHHHHHHHCCSEEEEECCCCCG-GGCCHHHHHTTTCEEEEE-EETTEEEEEEEESSCCE--EEEESCSS--SSCC-GGG
T ss_pred HHHHHHhhcCCCEEEEEEeecch-hhcCHHHhhhCCCcEEEc-CCCCccEEEEEEccChH--HheecCCC--Cccc-cCc
Confidence 47889999999999999998531 11110 01358987765 34567899999999753 22334432 1234 789
Q ss_pred EEEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEcccCccCCCCcCCChhhhhhhhcCC
Q 023207 86 VILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 163 (285)
Q Consensus 86 ~l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~~ 163 (285)
++.+++..+.|+|+|+|+..... ..++.+|.+|++.|.+++.+. .+.|+|||||||+.+...|...+..|
T Consensus 91 ~l~~~~~~~~v~~~h~p~~~~~~-~~~~~~r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~~~~~~------- 162 (257)
T 2voa_A 91 LIRAKIAGIDVINTYVPQGFKID-SEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKL------- 162 (257)
T ss_dssp EEEEEETTEEEEEEECCCCSCTT-SHHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGC-------
T ss_pred EEEEEECCEEEEEEEeCCCCCCC-cHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeeCCCCCchhhccChhHh-------
Confidence 98889999999999999876411 123445667888888887652 57899999999998887776554321
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCC-CCCCc-CCccceEEEEEeChhhHhhh
Q 023207 164 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN-PIGKY-RGKRMRIDYFIVSEELKDRI 241 (285)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~-~~~~~-~~~~~RID~i~~s~~l~~~v 241 (285)
.+..++++.++.++..+++.+ |+|+|+..+|.. ..|||++. ....+ .+.++||||||+++.+...+
T Consensus 163 --------~~~~~~~~~~~~~~~~l~~~~-l~D~~~~~~p~~---~~~T~~~~~~~~~~~~~~~~rID~i~~s~~~~~~~ 230 (257)
T 2voa_A 163 --------KNHVCFHEDARRAYKKILELG-FVDVLRKIHPNE---RIYTFYDYRVKGAIERGLGWRGDAILATPPLAERC 230 (257)
T ss_dssp --------TTSTTTCHHHHHHHHHHHTTT-CEEHHHHHSTTC---CCCSBCCTTSTTTTTTTCCBCCEEEEECHHHHTTE
T ss_pred --------CCCCCCCHHHHHHHHHHHHcC-cEeeehhhCCCC---CCcceeccccCCceecCceEEEEEEEECHHHHhhh
Confidence 234577888888998888654 999999888865 36999876 43222 24578999999999998888
Q ss_pred eeeEEccCccccCCCCCCCcccEEEEEee
Q 023207 242 IACEMQGHGIELEGFYGSDHCPVSLELSE 270 (285)
Q Consensus 242 ~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 270 (285)
.++.|..... ....+|||+||+++|.+
T Consensus 231 ~~~~v~~~~~--~~~~~SDH~pv~~~l~~ 257 (257)
T 2voa_A 231 VDCYADIKPR--LAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp EEEEECCHHH--HSSSCCSBCCEEEEECC
T ss_pred heeEeehhhc--cCCCCCCccCEEEEEeC
Confidence 8898876310 01378999999999864
No 4
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00 E-value=1.3e-34 Score=248.22 Aligned_cols=233 Identities=22% Similarity=0.359 Sum_probs=168.9
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCC--CCCCceEEEec-cCCCceeEEEEEeccCCcceeeeccCcCCCCCCCCC
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSP--PFKNYQIWWSL-ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDG 84 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~--~~~gy~~~~~~-~~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~g 84 (285)
.+.++|+.++|||||||||.... ..+... ...||.+++.. +..++.|+|||+|+++. .+...++. ...+.++
T Consensus 19 ~i~~~i~~~~~DIi~LQE~~~~~-~~~~~~l~~~~gy~~~~~~~~~~~~~G~ailsr~~~~--~~~~~~~~--~~~~~~~ 93 (259)
T 2jc5_A 19 GFYEYIAASGADIVCVQELKAQE-ADLSADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPD--NVQIGMGI--EEFDREG 93 (259)
T ss_dssp THHHHHHHTTCSEEEEECCCCCG-GGCCHHHHSGGGCEEEEECCSSTTCCCEEEEESSCCS--EEEESCSC--HHHHTTC
T ss_pred HHHHHHHhcCCCEEEEEEecchh-hccChhhccccCCeEEEeccCCCCcceEEEEEecCce--eEEeCCCC--CccCCCC
Confidence 58899999999999999998542 112111 13589877653 34456899999999753 23333321 1124578
Q ss_pred cEEEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEcccCccCCCCcCCChhhhhhhhcC
Q 023207 85 RVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162 (285)
Q Consensus 85 R~l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~ 162 (285)
|++.+.+..+.|+|+|+|+..... .+..+|.++++.|.+++.+. .+.|+|||||||+.+...|...+.
T Consensus 94 r~~~~~~~~~~v~~~h~~~~~~~~--~r~~~~~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~-------- 163 (259)
T 2jc5_A 94 RFVRCDFGRLSVISLYLPSGSSAE--ERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWK-------- 163 (259)
T ss_dssp CEEEEEETTEEEEEEECCCCTTCH--HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCST--------
T ss_pred eEEEEEcCCEEEEEEeccCCCCCc--HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhccChh--------
Confidence 998899999999999999887532 33444567788887777652 478999999999998876654331
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCc-CCccceEEEEEeChhhHhhh
Q 023207 163 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRI 241 (285)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~-~~~~~RID~i~~s~~l~~~v 241 (285)
.+.+..++++.+++.+..++...+|+|+|+..+|.. ..|||++.....+ .+.+.||||||+++.+..++
T Consensus 164 -------~~~~~~~~~~~~~~~~~~~l~~~~l~d~~~~~~~~~---~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~ 233 (259)
T 2jc5_A 164 -------GNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDV---PGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKA 233 (259)
T ss_dssp -------TCTTSTTSCHHHHHHHHHHHHTTCCEEHHHHHCTTC---CCCCEESCSSHHHHTTCEECCEEEEECHHHHTTE
T ss_pred -------hcCCCCCcCHHHHHHHHHHhccCCcEEeeHhhCCCC---CCccEECCcCCCccCCCeeEEEEEEECHHHHhHH
Confidence 122345678888889999885556999999888865 3699987543211 23458999999999998778
Q ss_pred eeeEEccCccccCCCCCCCcccEEEEEeeC
Q 023207 242 IACEMQGHGIELEGFYGSDHCPVSLELSEA 271 (285)
Q Consensus 242 ~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~ 271 (285)
.++.|... ..+|||+||+++|.+.
T Consensus 234 ~~~~v~~~------~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 234 VSAHVYKD------EKFSDHAPLVVEYDYA 257 (259)
T ss_dssp EEEEECCS------SCCSSBCCEEEEESCC
T ss_pred hheeecCC------CCCCCcccEEEEEecc
Confidence 89999852 6899999999999875
No 5
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00 E-value=3.2e-34 Score=245.33 Aligned_cols=236 Identities=24% Similarity=0.338 Sum_probs=168.7
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCC-CCCCceEEEeccCCCceeEEEEEeccCCcceeeeccCcCCCCCCCCCcE
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSP-PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRV 86 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~-~~~gy~~~~~~~~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~gR~ 86 (285)
.+.++|++++|||||||||........... ...||.+++. +..++.|+|||+|+++. .+...++. ...+.++|+
T Consensus 17 ~i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~-~~~~~~G~ailsr~~~~--~~~~~~~~--~~~~~~~~~ 91 (256)
T 2jc4_A 17 QVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWS-GQKTYNGVAIVSRSVPQ--DVHFGLPA--LPDDPQRRV 91 (256)
T ss_dssp HHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEE-CCSSSCCEEEEESSCCE--EEEESCTT--STTCCSCCE
T ss_pred HHHHHHHhcCCCEEEEEeeccchhcCCHhHHhhcCCeEEEC-CCCcceEEEEEECCChH--HheecCCC--CccCCcCcE
Confidence 467899999999999999986422111000 1358987765 34567899999999753 22233442 123457899
Q ss_pred EEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEcccCccCCCCcCCChhhhhhhhcCCC
Q 023207 87 ILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY 164 (285)
Q Consensus 87 l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~~~ 164 (285)
+.+.++.+.|+|+|+|+..... ..++..|..+++.|.+++.+. .+.|+|||||||+.+...|...+..
T Consensus 92 ~~~~~~~~~v~~~h~~~~~~~~-~~~~~~r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~~~~~~--------- 161 (256)
T 2jc4_A 92 IAATVSGVRVINVYCVNGEALD-SPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEK--------- 161 (256)
T ss_dssp EEEEETTEEEEEEECCCCCSTT-SHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGG---------
T ss_pred EEEEeCCEEEEEEEecCCCCCC-cHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCchhhccChhH---------
Confidence 9899999999999999876421 123445667788888777652 5789999999999887666554321
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCc-CCccceEEEEEeChhhHhhhee
Q 023207 165 VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIA 243 (285)
Q Consensus 165 ~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~-~~~~~RID~i~~s~~l~~~v~~ 243 (285)
+.+..++++.+++.++.+++.+ |+|+|+..+|.. ..|||++.....+ .+.+.||||||+++.+...+.+
T Consensus 162 ------~~~~~~~~~~~~~~~~~l~~~~-l~D~~~~~~~~~---~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~ 231 (256)
T 2jc4_A 162 ------WHEKIHCSSVERQWFQNLLDLG-LTDSLRQVHPEG---AFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKD 231 (256)
T ss_dssp ------GTTCTTSCHHHHHHHHHHHTTT-CEEHHHHHCCSS---CCCCBCCTTTTHHHHTCCBCCEEEEECHHHHTTEEE
T ss_pred ------hCCCCCcCHHHHHHHHHHHhcC-cEEhhhhhCCCC---CceeeEcCCCCccccCcEEEEEEEEECHHHHhheeE
Confidence 1245577888888998888655 999999888865 3699987543322 2346899999999998877889
Q ss_pred eEEccCccccCCCCCCCcccEEEEEee
Q 023207 244 CEMQGHGIELEGFYGSDHCPVSLELSE 270 (285)
Q Consensus 244 ~~i~~~~~~~~~~~~SDH~PV~~~l~~ 270 (285)
+.|..... ....+|||+||+++|.+
T Consensus 232 ~~v~~~~~--~~~~~SDH~pv~~~l~l 256 (256)
T 2jc4_A 232 VRVDLETR--ALERPSDHAPVTAEFDW 256 (256)
T ss_dssp EEECHHHH--TSSSCCSBCCEEEEECC
T ss_pred EEEEhhcc--cCCCCCCcccEEEEecC
Confidence 99875311 12478999999999864
No 6
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=100.00 E-value=1.2e-34 Score=257.23 Aligned_cols=232 Identities=31% Similarity=0.568 Sum_probs=164.9
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCC--CCCCCc-eEEEecc--CCCceeEEEEEeccCCcceeeeccCcCCCCCCC
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSS--PPFKNY-QIWWSLA--DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEP 82 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~--~~~~gy-~~~~~~~--~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~ 82 (285)
++.++|+.++|||||||||.... ..+.. ....|| ..++... ..+++|+|||+|+++ ..+...++. ...+.
T Consensus 79 ~i~~~i~~~~~DIi~LQE~~~~~-~~~~~~l~~~~gy~~~~~~~~~~~~g~~Gvailsr~~~--~~~~~~~~~--~~~~~ 153 (318)
T 1hd7_A 79 KGLDWVKEEAPDILCLQETKCSE-NKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCP--LKVSYGIGD--EEHDQ 153 (318)
T ss_dssp THHHHHHHHCCSEEEEECCCCCC------------CCCEEEEECC-----CCCEEEEESSCC--SEEEESCSC--GGGSS
T ss_pred hHHHHHHhhCCCEEEEEEccCch-hhccHHHHhcCCCceEEEecCCCCCccceEEEEEcCCc--eeEEecCCC--cccCC
Confidence 48899999999999999998532 11211 114689 5666531 345679999999973 333333321 12456
Q ss_pred CCcEEEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc-CCCCEEEEcccCccCCCCcCCChhhhhhhhc
Q 023207 83 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161 (285)
Q Consensus 83 ~gR~l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~ 161 (285)
++|++.+.+..+.|+|+|+|+..... .++++|.+|++.|.+++... ...|+|||||||+.+...|.+++..
T Consensus 154 ~~r~l~~~~~~~~v~~vh~p~~~~~~--~~~~~r~~~~~~l~~~l~~~~~~~pvIl~GDFN~~~~~~D~~~~~~------ 225 (318)
T 1hd7_A 154 EGRVIVAEFDSFVLVTAYVPNAGRGL--VRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG------ 225 (318)
T ss_dssp SSCEEEEECSSCEEEEEECCCCCGGG--TTHHHHHHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHH------
T ss_pred CCcEEEEEcCCEEEEEEEcCCCCCcc--ccHHHHHHHHHHHHHHHHhcccCCCEEEEeeCCCCChhhhccChhh------
Confidence 79999899999999999999876421 24456778888888877642 2389999999999988777655431
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHH-HhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCc-CCccceEEEEEeChhhHh
Q 023207 162 NGYVPPNKEDWGQPGFTIAERKRF-GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKD 239 (285)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~r~~l-~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~-~~~~~RID~i~~s~~l~~ 239 (285)
+.+..+|++.++.+| ..+++. +|+|+|+..+|... ..|||++.....+ .+.+.||||||+++.+..
T Consensus 226 ---------~~~~~g~~~~~~~~~~~~ll~~-~l~D~~r~~~p~~~--~~~T~~~~~~~~~~~~~~~rID~il~s~~~~~ 293 (318)
T 1hd7_A 226 ---------NKKNAGFTPQERQGFGELLQAV-PLADSFRHLYPNTP--YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP 293 (318)
T ss_dssp ---------HTTSTTSCHHHHHHHHHHHHHT-TCEEHHHHHCTTCT--TCCSBCCSGGGHHHHTCCBCCEEEEECGGGGG
T ss_pred ---------cCCCCCcCHHHHHHHHHHHhhC-CCEEeehhhCCCCC--CCcceECCcCCCcccCCceEEEEEEECHHHHh
Confidence 124567888899999 888887 49999999888642 2599987542211 234689999999999987
Q ss_pred hheeeEEccCccccCCCCCCCcccEEEEEee
Q 023207 240 RIIACEMQGHGIELEGFYGSDHCPVSLELSE 270 (285)
Q Consensus 240 ~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 270 (285)
.+.++.|... ..+|||+||+++|.+
T Consensus 294 ~v~~~~v~~~------~~~SDH~Pv~~~l~l 318 (318)
T 1hd7_A 294 ALCDSKIRSK------ALGSDHCPITLYLAL 318 (318)
T ss_dssp GEEEEEECTT------CCSSSBCCEEEEECC
T ss_pred hhhheEeecc------CCCCCccCEEEEecC
Confidence 7889999863 467999999999864
No 7
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=100.00 E-value=7.9e-34 Score=247.41 Aligned_cols=232 Identities=31% Similarity=0.574 Sum_probs=166.7
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCC--CCCCCc-eEEEecc--CCCceeEEEEEeccCCcceeeeccCcCCCCCCC
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSS--PPFKNY-QIWWSLA--DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEP 82 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~--~~~~gy-~~~~~~~--~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~ 82 (285)
.+.++|++.+|||||||||.... ..+.. ....|| ..++... ..+++|+|||+|+++ ..+...++. ...+.
T Consensus 46 ~i~~~i~~~~~DIi~LQE~~~~~-~~~~~~l~~~~gy~~~~~~~~~~~~g~~Gvailsr~~~--~~~~~~~~~--~~~~~ 120 (285)
T 2o3h_A 46 KGLDWVKEEAPDILCLQETKCSE-NKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCP--LKVSYGIGD--EEHDQ 120 (285)
T ss_dssp THHHHHHHHCCSEEEEECCCCCT-TSCCGGGGGCGGGCEEEEECBC--CCSCCEEEEESSCC--SEEEESCSC--GGGSS
T ss_pred hHHHHHHhcCCCEEEEEEeecch-hhccHHHHhccCCcEEEEecccCCcccceEEEEEccCh--HHeeeccCC--cccCC
Confidence 38899999999999999998642 11211 114589 5666531 335679999999963 333333321 12356
Q ss_pred CCcEEEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc-CCCCEEEEcccCccCCCCcCCChhhhhhhhc
Q 023207 83 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161 (285)
Q Consensus 83 ~gR~l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~ 161 (285)
++|++.+.+..+.|+|+|+|+..... .+.++|.++++.|.+++... ...|+|||||||+.+...|.+.+.
T Consensus 121 ~~r~l~~~~~~~~v~~~h~p~~~~~~--~~~~~r~~~~~~l~~~l~~~~~~~p~Il~GDFN~~~~~~D~~~~~------- 191 (285)
T 2o3h_A 121 EGRVIVAEFDSFVLVTAYVPNAGRGL--VRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK------- 191 (285)
T ss_dssp BCCEEEEECSSCEEEEEECCCCCGGG--TTHHHHHHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGGBSCTT-------
T ss_pred CCcEEEEEeCCEEEEEEEcCCCCCcc--hhHHHHHHHHHHHHHHHHhhccCCCEEEEEECCCCCchhhccChh-------
Confidence 78998888889999999999876421 34455777888888877652 458999999999988777754432
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHH-HhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCc-CCccceEEEEEeChhhHh
Q 023207 162 NGYVPPNKEDWGQPGFTIAERKRF-GAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVSEELKD 239 (285)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~r~~l-~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~-~~~~~RID~i~~s~~l~~ 239 (285)
.+.+..++++.++.+| ..+++. +|+|+|+..+|... ..|||++.....+ .+.+.||||||+++.+..
T Consensus 192 --------~~~~~~g~~~~~~~~~~~~~l~~-~l~D~~~~~~~~~~--~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~ 260 (285)
T 2o3h_A 192 --------GNKKNAGFTPQERQGFGELLQAV-PLADSFRHLYPNTP--YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP 260 (285)
T ss_dssp --------TCTTSTTSCHHHHHHHHHHHHHT-TCEEHHHHHCTTCC--SCCSBCCSSTTHHHHTCCBCCEEEEECGGGGG
T ss_pred --------hcCCCCCcCHHHHHHHHHHHhcC-CCEEEEEecCCCCC--CcEeEecCcCCccccCceeEEEEEEECHHHHh
Confidence 1123457888889999 888887 59999998888642 2499987543211 134679999999999987
Q ss_pred hheeeEEccCccccCCCCCCCcccEEEEEee
Q 023207 240 RIIACEMQGHGIELEGFYGSDHCPVSLELSE 270 (285)
Q Consensus 240 ~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 270 (285)
.+.++.|... ..+|||+||+++|.+
T Consensus 261 ~v~~~~v~~~------~~~SDH~pv~~~l~l 285 (285)
T 2o3h_A 261 ALCDSKIRSK------ALGSDHCPITLYLAL 285 (285)
T ss_dssp GEEEEEECTT------CCSSSBCCEEEEECC
T ss_pred hhhheEeecc------CCCCCeecEEEEecC
Confidence 7889999863 468999999999864
No 8
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=100.00 E-value=9.5e-33 Score=233.50 Aligned_cols=208 Identities=23% Similarity=0.287 Sum_probs=148.4
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCCCCCCceEE-EeccCCCceeEEEEEeccCCcceeeeccCcCCCCCCCCCcE
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRV 86 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~~gy~~~-~~~~~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~gR~ 86 (285)
.+.++|++++|||||||||+... ..+......||.++ +..+..+++|+|||+|+++ +..+.. .. .+.++|+
T Consensus 26 ~~~~~i~~~~~DIv~LQE~~~~~-~~~~~l~~~~y~~~~~~~~~~~~~Gvail~r~~~-~~~~~~-~~-----~~~~~r~ 97 (238)
T 1vyb_A 26 RLASWIKSQDPSVCCIQETHLTC-RDTHRLKIKGWRKIYQANGKQKKAGVAILVSDKT-DFKPTK-IK-----RDKEGHY 97 (238)
T ss_dssp HHHHHHHHHCCSEEEEECCCCCT-TSGGGCCCTTCCEEEEECCSSSSCCEEEEECTTC-CCEEEE-EE-----ECTTSSE
T ss_pred HHHHHHHHcCCCEEEEecccCCC-CCchhHhhCCCCeEEEccCCCCCceEEEEEeCCC-Cccccc-ee-----EcCCCcE
Confidence 57789999999999999997531 11211224688754 3433445679999999964 333221 11 2457888
Q ss_pred EEEEe--C--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEcccCccCCCCcCCChhhhhhhhcC
Q 023207 87 ILAEF--E--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLN 162 (285)
Q Consensus 87 l~~~~--~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~ 162 (285)
+.+.+ . .+.|+|+|+|+... .++++.+.+.+.+..+.|+|||||||+.+...|...
T Consensus 98 i~~~~~~~~~~~~v~~~y~p~~~~----------~~~~~~l~~~l~~~~~~~~Il~GDFN~~~~~~~~~~---------- 157 (238)
T 1vyb_A 98 IMVKGSIQQEELTILNIYAPNTGA----------PRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRST---------- 157 (238)
T ss_dssp EEEEEEETTEEEEEEEEECCSSSH----------HHHHHHHHHHTTTTCCTTEEEEEECSSCSSGGGBTT----------
T ss_pred EEEEEEeCCCcEEEEEEecCCCCc----------HHHHHHHHHHHHhccCCCEEEEccCCCCCCccccCC----------
Confidence 87765 2 69999999998652 124555666665445689999999999876554321
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCcCCccceEEEEEeChhhHhhhe
Q 023207 163 GYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRII 242 (285)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i~~s~~l~~~v~ 242 (285)
.++.+.++.++..++...+|+|+|+..+|.. ..|||++... ....||||||+++.+...+.
T Consensus 158 ------------~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~---~~~T~~~~~~----~~~~rID~i~~s~~~~~~~~ 218 (238)
T 1vyb_A 158 ------------RQKVNKDTQELNSALHQADLIDIYRTLHPKS---TEYTFFSAPH----HTYSKIDHIVGSKALLSKCK 218 (238)
T ss_dssp ------------CCCCCHHHHHHHHHHHHTTEEEHHHHHCTTC---CCCSEEETTT----TEEECCEEEEEEGGGGGGEE
T ss_pred ------------CCCCcHHHHHHHHHHhhCCCEEhhHhhCCCC---CceeEEcCCC----CcccceEEEEeCHHHHhhhh
Confidence 2344556778888886666999999888865 4699987542 23579999999999987788
Q ss_pred eeEEccCccccCCCCCCCcccEEEEEe
Q 023207 243 ACEMQGHGIELEGFYGSDHCPVSLELS 269 (285)
Q Consensus 243 ~~~i~~~~~~~~~~~~SDH~PV~~~l~ 269 (285)
++.|.. ..+|||+||+++|+
T Consensus 219 ~~~v~~-------~~~SDH~pv~~~l~ 238 (238)
T 1vyb_A 219 RTEIIT-------NYLSDHSAIKLELR 238 (238)
T ss_dssp EEEEEC-------CSSSSSCEEEEEEC
T ss_pred hceeec-------CCCCCcccEEEEeC
Confidence 999885 47899999999874
No 9
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=100.00 E-value=5.4e-33 Score=239.25 Aligned_cols=238 Identities=20% Similarity=0.306 Sum_probs=163.7
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCCC--CCCceEEEeccCCCceeEEEEEeccCCcceeeeccCcCCCCCCCCCc
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSPP--FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR 85 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~--~~gy~~~~~~~~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~gR 85 (285)
.+.++|++.+|||||||||...... ..... ..||.+++. +..+++|+|||+|+++ ..+...++. ...+..++
T Consensus 17 ~i~~~i~~~~~Dii~LQE~~~~~~~-~~~~~l~~~gy~~~~~-~~~~~~G~ailsr~~~--~~~~~~~~~--~~~~~~~~ 90 (268)
T 1ako_A 17 QLEAIVEKHQPDVIGLQETKVHDDM-FPLEEVAKLGYNVFYH-GQKGHYGVALLTKETP--IAVRRGFPG--DDEEAQRR 90 (268)
T ss_dssp HHHHHHHHHCCSEEEEECCCCCGGG-CCHHHHHHTTCEEEEE-EETTEEEEEEEESSCC--SEEEESSTT--CCHHHHTT
T ss_pred HHHHHHHHcCCCEEEEEeccCChhh-CCHhHhccCCCcEEEe-CCCCcceEEEEEecCc--ceeeeCCCC--cccccCCC
Confidence 4778999999999999999853211 11111 258987765 3556789999999974 333333431 01123567
Q ss_pred EEEEEeC----CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh--cCCCCEEEEcccCccCCCCcCCChh----h
Q 023207 86 VILAEFE----TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHEEIDVSHPE----F 155 (285)
Q Consensus 86 ~l~~~~~----~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~--~~~~p~Il~GDFN~~~~~~D~~~~~----~ 155 (285)
++.+.+. .+.|+|+|+|+.....+..+...|..+++.|.+++++ ..+.|+|||||||+.+.+.|..... .
T Consensus 91 ~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~ 170 (268)
T 1ako_A 91 IIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKR 170 (268)
T ss_dssp EEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHH
T ss_pred EEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCcccChhh
Confidence 7777663 6999999999876422112344577888888888875 2578999999999988776654211 1
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCc-CCccceEEEEEeC
Q 023207 156 FAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY-RGKRMRIDYFIVS 234 (285)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~-~~~~~RID~i~~s 234 (285)
|.. .+..++++.++++++.+.+.+ |+|+|+..+|... ..|||++.....+ .+.+.||||||++
T Consensus 171 w~~-------------~~~~~~~~~~~~~~~~l~~~g-l~D~~~~~~~~~~--~~~T~~~~~~~~~~~~~~~riD~il~s 234 (268)
T 1ako_A 171 WLR-------------TGKCSFLPEEREWMDRLMSWG-LVDTFRHANPQTA--DRFSWFDYRSKGFDDNRGLRIDLLLAS 234 (268)
T ss_dssp HHH-------------HTBTTSCHHHHHHHHHHHHTT-EEEHHHHHSTTCC--SCCSBCCTTTTHHHHTCCBCCEEEEEE
T ss_pred hcc-------------CCCcCcCHHHHHHHHHHhcCC-CEEeEhhhCCCCC--CCeeEeCCcCCccccCceEEEEEEEeC
Confidence 100 034567888888888877655 9999999888643 4699987643322 1346899999999
Q ss_pred hhhHhhheeeEEccCccccCCCCCCCcccEEEEEe
Q 023207 235 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 269 (285)
Q Consensus 235 ~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~ 269 (285)
+.+...+.++.|..... ....+|||+||+++|.
T Consensus 235 ~~~~~~~~~~~i~~~~~--~~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 235 QPLAECCVETGIDYEIR--SMEKPSDHAPVWATFR 267 (268)
T ss_dssp HHHHTTEEEEEECHHHH--TSSSCCSBCCEEEEEC
T ss_pred HHHHHHHHhceechhhc--CCCCCCCcccEEEEcc
Confidence 99987777888875210 1247899999999985
No 10
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.96 E-value=3.1e-29 Score=213.81 Aligned_cols=195 Identities=13% Similarity=0.073 Sum_probs=131.0
Q ss_pred hhhhhhhcCCCeEEEehhhhhHhhhcCCCCCCCceEEEeccCCCceeEEEEEeccCCcceeeeccCcCCCCCCCCCcEEE
Q 023207 9 APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL 88 (285)
Q Consensus 9 ~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~~gy~~~~~~~~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~gR~l~ 88 (285)
+.++|++.+|||||||||+. ..||. +. + .+++||||+++.+..|......+ .+..++++.
T Consensus 25 l~~~l~~~~~DIl~LQEt~~----------~~gy~--~~-~-~~~~gvail~~~~~~~~~~~~~~------~~~~~~~i~ 84 (240)
T 2ei9_A 25 LPSIARDLGLDIVLVQEQYS----------MVGFL--AQ-C-GAHPKAGVYIRNRVLPCAVLHHL------SSTHITVVH 84 (240)
T ss_dssp HHHHHHHHTCSEEEEESCCT----------TSSSE--EC-C-SSSCSEEEEESSTTSCEEECGGG------CCSSEEEEE
T ss_pred HHHHHHHcCCCEEEeecceE----------cCCce--Ee-c-cCCCCEEEEEecCCcceeeeccc------CCCCEEEEE
Confidence 88999999999999999972 13787 33 2 24779999999854354332222 123455666
Q ss_pred EEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEcccCccCCCCcCCChhhhhhhhcCCCCCCC
Q 023207 89 AEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPN 168 (285)
Q Consensus 89 ~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~ 168 (285)
+++..++|+|+|+|++... .++.++++.|...+ .+.++|||||||+++..++ +..
T Consensus 85 i~~~~i~i~svY~P~~~~~------~~~~~~l~~l~~~~---~~~~~Ii~GDfN~~~~~w~---~~~------------- 139 (240)
T 2ei9_A 85 IGGWDLYMVSAYFQYSDPI------DPYLHRLGNILDRL---RGARVVICADTNAHSPLWH---SLP------------- 139 (240)
T ss_dssp ETTTTEEEEEEECCTTSCS------HHHHHHHHHHHHHT---TTSCEEEEEECCCCCGGGT---CCH-------------
T ss_pred EeeccEEEEEEEcCCCCch------hHHHHHHHHHHHhc---CCCcEEEEEeccccccccc---CCC-------------
Confidence 6667899999999998752 23566666665433 3579999999999875321 110
Q ss_pred CCCCCCCCCCHHHHHHHHhhhhcCCeeeeeec--cCCCCCCceeeeeeCCCCCCcCCccceEEEEEeChhhHhhheeeEE
Q 023207 169 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRF--LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEM 246 (285)
Q Consensus 169 ~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~--~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i~~s~~l~~~v~~~~i 246 (285)
...++++.+|+...+.+. +++|+++. .+|.. ..|||+++. .++||||+|+|+.+.. .++.|
T Consensus 140 ----~~~~~~~~~r~~~~~~l~--~~~d~~~l~~~~~~~---~~~T~~s~~------~~~rID~~l~s~~l~~--~~~~i 202 (240)
T 2ei9_A 140 ----RHYVGRGQEVADRRAKME--DFIGARRLVVHNADG---HLPTFSTAN------GESYVDVTLSTRGVRV--SEWRV 202 (240)
T ss_dssp ----HHHSSSCHHHHHHHHHHH--HHHHHTTCEECCCTT---CCCSEEETT------EEECCEEEEECTTCCE--EEEEE
T ss_pred ----CCCCCcchhhHHHHHHHH--HHHHhcCCEecCCCC---CCceEeCCC------CceEEEEEEecCcccc--CCeEE
Confidence 001344555654444443 37787773 46643 369999842 2699999999999874 56666
Q ss_pred ccCccccCCCCCCCcccEEEEEeeCC
Q 023207 247 QGHGIELEGFYGSDHCPVSLELSEAS 272 (285)
Q Consensus 247 ~~~~~~~~~~~~SDH~PV~~~l~~~~ 272 (285)
.. ..+|||+||+++|....
T Consensus 203 ~~-------~~~SDH~Pv~~~l~~~~ 221 (240)
T 2ei9_A 203 TN-------ESSSDHRLIVFGVGGGT 221 (240)
T ss_dssp CS-------CCSSSBCCEEEEEEC--
T ss_pred CC-------CCCCCcccEEEEECCCC
Confidence 52 57899999999998753
No 11
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.95 E-value=4.6e-27 Score=200.45 Aligned_cols=204 Identities=15% Similarity=0.138 Sum_probs=128.5
Q ss_pred CChhhhhhhcCCCeEEEehhhhhHhhhcCCCCCCCceEEEecc-CCCceeEEEEEec-cCCcceeeeccCcCCCCCCCCC
Q 023207 7 KDAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLA-DSKYAGTALLVKK-CFQPKKVSFSLEKTALKYEPDG 84 (285)
Q Consensus 7 ~~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~~gy~~~~~~~-~~~~~GvaIlsr~-~~~~~~~~~~l~~~~~~~d~~g 84 (285)
+.+.++|++.+|||||||||+........ ...||..++... ..+++|+|||++. ++ + +. .++. .+..+
T Consensus 35 ~~l~~~i~~~~~DIv~lQE~~~~~~~~~~--~~~gy~~~~~~~~~~~~~GvaIl~~~~~~-~--~~-~~~~----~~~~~ 104 (245)
T 1wdu_A 35 AELAIEAATRKAAIALIQEPYVGGAKSMK--GFRGVRVFQSTAQGDGTVKAAIAVFDHDL-D--VI-QYPQ----LTTNN 104 (245)
T ss_dssp HHHHHHHHHHTCSEEEEESCCC------C--CCSSCEEEECCCCTTCCCCEEEEECCSSC-E--EE-ECTT----TCCSS
T ss_pred HHHHHHHhhcCCCEEEEEcccccCCcccc--CCCcceEeccccccCCCCCeEEEEECCCc-c--eE-Eecc----cccCC
Confidence 35788999999999999999864322221 245887665432 2346799999965 43 2 21 1221 11222
Q ss_pred cEEE--EEeC--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEcccCccCCCCcCCChhhhhhhh
Q 023207 85 RVIL--AEFE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160 (285)
Q Consensus 85 R~l~--~~~~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~ 160 (285)
++. +... .+.|+|+|+|+.... ..|++.|.+++......|+|||||||+.+..++..
T Consensus 105 -~~~~~i~~~~~~~~v~~vy~p~~~~~---------~~~~~~l~~~~~~~~~~~~Ii~GDfN~~~~~~~~~--------- 165 (245)
T 1wdu_A 105 -IVVVGIRTRAWEITLVSYYFEPDKPI---------ESYLEQIKRVERKMGPKRLIFGGDANAKSTWWGSK--------- 165 (245)
T ss_dssp -EEEEEEECSSCEEEEEEEECCTTSCS---------HHHHHHHHHHHHTTCSSSEEEEEECCCCCGGGTCS---------
T ss_pred -EEEEEEEcCCCcEEEEEEEeCCCCCH---------HHHHHHHHHHHHHhCCCcEEEEeccccCcccCCCC---------
Confidence 333 3333 699999999987631 23445566666544458999999999976432110
Q ss_pred cCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCcCCccceEEEEEeChhhHhh
Q 023207 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR 240 (285)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i~~s~~l~~~ 240 (285)
....+++.|..++...+|. ..++. ..|||++...+ .+.++||||||+++.+...
T Consensus 166 ----------------~~~~~~~~l~~~~~~~~l~----~~~~~----~~~T~~~~~~~--~~~~~rID~i~~s~~~~~~ 219 (245)
T 1wdu_A 166 ----------------EDDARGDQLMGTLGELGLH----ILNEG----DVPTFDTIRGG--KRYQSRVDVTFCTEDMLDL 219 (245)
T ss_dssp ----------------SCCHHHHHHHHHHHHHTCE----ECCCS----CCCSEEC-------CCEECCEEEEECGGGBTT
T ss_pred ----------------CcCcchHHHHHHHHHCCcE----EecCC----CCCcEECCCCC--CCCCCEEEEEEeChHHHhh
Confidence 1123445666666554453 33443 35899875432 1246899999999998777
Q ss_pred heeeEEccCccccCCCCCCCcccEEEEEeeC
Q 023207 241 IIACEMQGHGIELEGFYGSDHCPVSLELSEA 271 (285)
Q Consensus 241 v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~ 271 (285)
+.++.|... ..+|||+||+++|.+.
T Consensus 220 v~~~~v~~~------~~~SDH~Pv~~~l~l~ 244 (245)
T 1wdu_A 220 IDGWRVDED------LVSSDHNGMVFNIRLQ 244 (245)
T ss_dssp EEEEEECTT------SSSSSBCCEEEEECCC
T ss_pred ccceEEcCC------CCCCCcccEEEEEEeC
Confidence 889999852 6899999999999864
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.95 E-value=2.1e-27 Score=214.10 Aligned_cols=208 Identities=21% Similarity=0.221 Sum_probs=129.3
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCCCCCCceEEEeccCCCceeEEEEEeccCCcceeeeccCcCCCCCCCCCc-E
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-V 86 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~~gy~~~~~~~~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~gR-~ 86 (285)
.+.++|+.++||||||||+.......+. ..+.+|..++. +..+++|+|||+|+++..... ..+.. .....+| +
T Consensus 141 ~I~~~I~~~~PDIV~LQEv~~~~~~~l~-~~~~~y~~~~~-~~~~~~G~aIlsk~~i~~~~~-~~~~~---~~~~~~r~~ 214 (362)
T 4gew_A 141 AVAHIVKNVNPDILFLQEVVDRDLAPID-KLQSLYKIYYS-NKGCQYYTAILVSKMFDVEKH-DVIHF---QNSGMYRTL 214 (362)
T ss_dssp HHHHHHHHHCCSEEEEEEECSTTCHHHH-GGGGTEEEEES-STTSSSEEEEEEETTEEEEEE-EEEEC---TTCSSCCEE
T ss_pred HHHHHHHHcCCCEEEEEcCChhHhHHHH-HhcCCceEEeC-CCCCCceEEEEEeccCccccc-cccCC---CCCcccceE
Confidence 4788999999999999999754333333 23456766654 456678999999987522211 11111 1112233 3
Q ss_pred EEEE--eC--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHH----hcCCCCEEEEcccCccCCCCcCCChhhhhh
Q 023207 87 ILAE--FE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL----QCSGKPLIWCGDLNVSHEEIDVSHPEFFAA 158 (285)
Q Consensus 87 l~~~--~~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~----~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~ 158 (285)
+.+. +. .+.|+|+|+++..... ..|..++..+..++. ...+.|+|||||||..+...+.
T Consensus 215 l~~~i~~~g~~l~v~ntHL~s~~~~~-----~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~-------- 281 (362)
T 4gew_A 215 QILEGSIGGLKVFLLNTHLESTREHR-----PQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSR-------- 281 (362)
T ss_dssp EEEEEEETTEEEEEEEEECCCSGGGH-----HHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCC--------
T ss_pred EEEEEEECCEEEEEEEecCCccccch-----hHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccch--------
Confidence 3343 33 6999999998876421 123333444433332 2467899999999986643211
Q ss_pred hhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCc---CCccceEEEEEeCh
Q 023207 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY---RGKRMRIDYFIVSE 235 (285)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~---~~~~~RID~i~~s~ 235 (285)
.. .+|.|+|+..++... ..|||+...+... ...+.||||||+++
T Consensus 282 ------------------------------~~-~gl~Da~~~~~~~~~--~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~ 328 (362)
T 4gew_A 282 ------------------------------VP-DGVKDAWEAAGSDNK--TKFTWDTFKNDNKQGFHGAKMRFDRLYWSG 328 (362)
T ss_dssp ------------------------------CC-TTCEEHHHHTTCCGG--GCCSEETTTCTTSCCSSCCEECCEEEEEES
T ss_pred ------------------------------hc-chHHHHHHHhCCCCC--CCcCcccccCcccccCCCCCcceEEEEEcC
Confidence 11 249999998865443 5799987543322 23457999999999
Q ss_pred hhHhhheeeEEccCc-cccCCCCCCCcccEEEEEe
Q 023207 236 ELKDRIIACEMQGHG-IELEGFYGSDHCPVSLELS 269 (285)
Q Consensus 236 ~l~~~v~~~~i~~~~-~~~~~~~~SDH~PV~~~l~ 269 (285)
.+. +.++.+.... .......+|||+||+++|.
T Consensus 329 ~l~--~~~~~vi~~~ri~~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 329 PLD--KVKFTLEGRQRIRSCLCFPSDHWAINATFF 361 (362)
T ss_dssp SCC--EEEEEEECCSCCTTTSSCSCSSCEEEEEEE
T ss_pred Ccc--eeEEEEEeeeecCCCCCCCCcccCEEEEEc
Confidence 875 4555554211 1111356899999999986
No 13
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.94 E-value=2.4e-26 Score=195.62 Aligned_cols=208 Identities=19% Similarity=0.209 Sum_probs=124.2
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCCCCCCceEEEeccCCCceeEEEEEeccCCcceee-eccCcCCCCCCCCCcE
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS-FSLEKTALKYEPDGRV 86 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~~gy~~~~~~~~~~~~GvaIlsr~~~~~~~~~-~~l~~~~~~~d~~gR~ 86 (285)
.+.++|++++||||||||+.......+.. .+.+|. ++..+..+.+|+||++++++...... ..++. ......+
T Consensus 35 ~i~~~i~~~~pDIi~LQEv~~~~~~~l~~-~~~~~~-~~~~~~~~~~g~~il~~~~~~~~~~~~~~~~~----~~~~~~~ 108 (256)
T 4fva_A 35 AVAHIVKNVNPDILFLQEVVDRDLAPIDK-LQSLYK-IYYSNKGCQYYTAILVSKMFDVEKHDVIHFQN----SGMYRTL 108 (256)
T ss_dssp HHHHHHHHHCCSEEEEEEECSTTCHHHHG-GGGTEE-EEESSTTSSSEEEEEEETTCEEEEEEEEECTT----CSSCCEE
T ss_pred HHHHHHHHcCCCEEEEEecChhHhHHHHH-hcCCce-EeecCCCCCcceEEEEeecccceecccccCCC----Cccccee
Confidence 36789999999999999997643333322 223333 33334556789999999875322211 12221 1112223
Q ss_pred EEE--EeC--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHH----HHHHhcCCCCEEEEcccCccCCCCcCCChhhhhh
Q 023207 87 ILA--EFE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ----EFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAA 158 (285)
Q Consensus 87 l~~--~~~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~----~~l~~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~ 158 (285)
+.+ .+. .+.|+|+|+++..... . .+..++..+. .......+.|+|+|||||+.+.....
T Consensus 109 ~~~~~~~~g~~~~v~~~Hl~~~~~~~--~---~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~-------- 175 (256)
T 4fva_A 109 QILEGSIGGLKVFLLNTHLESTREHR--P---QRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSR-------- 175 (256)
T ss_dssp EEEEEEETTEEEEEEEEECCCSGGGH--H---HHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCCC--------
T ss_pred EEEEEEeCCeEEEEEEecCCCCCcch--H---HHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhhh--------
Confidence 333 333 6999999998865421 1 1222222222 22333467899999999986542111
Q ss_pred hhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCc---CCccceEEEEEeCh
Q 023207 159 AKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKY---RGKRMRIDYFIVSE 235 (285)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~---~~~~~RID~i~~s~ 235 (285)
.. .+|.|+|+..++... ..|||....+... .....||||||+++
T Consensus 176 ------------------------------~~-~~~~d~~~~~~~~~~--~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~ 222 (256)
T 4fva_A 176 ------------------------------VP-DGVKDAWEAAGSDNK--TKFTWDTFKNDNKQGFHGAKMRFDRLYWSG 222 (256)
T ss_dssp ------------------------------CC-TTCEEHHHHTTCCGG--GCCSEETTTCCSSCSCCSCEECCEEEEEES
T ss_pred ------------------------------hh-cchhhHHHHhCCCCC--CCcccccccCcccccCCCCCcCeEEEEEcC
Confidence 11 248999988765443 5799976543221 23457999999998
Q ss_pred hhHhhheeeEEccC-ccccCCCCCCCcccEEEEEe
Q 023207 236 ELKDRIIACEMQGH-GIELEGFYGSDHCPVSLELS 269 (285)
Q Consensus 236 ~l~~~v~~~~i~~~-~~~~~~~~~SDH~PV~~~l~ 269 (285)
.+. +.++.+... ........+|||+||+++|.
T Consensus 223 ~~~--~~~~~~~~~~~~~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 223 PLD--KVKFTLEGRQRIRSCLCFPSDHWAINATFF 255 (256)
T ss_dssp SCC--EEEEEEECCSCCTTTCSCSCSSCEEEEEEE
T ss_pred Cce--eeEEEEEeeEecCCCCCCcCcccCEEEEEc
Confidence 865 456665431 11111356799999999986
No 14
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.94 E-value=4.8e-26 Score=195.49 Aligned_cols=213 Identities=18% Similarity=0.204 Sum_probs=131.2
Q ss_pred ChhhhhhhcCCCeEEEehhhhh------------------HhhhcCCCCCCCceEEEec---c-CCCceeEEEEEeccCC
Q 023207 8 DAPKNHQELKDDTKASREEKLI------------------LMRALSSPPFKNYQIWWSL---A-DSKYAGTALLVKKCFQ 65 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~------------------~~~~l~~~~~~gy~~~~~~---~-~~~~~GvaIlsr~~~~ 65 (285)
.+.++|++++||||||||+... ..+.+......+|.+++.. + ..+.+|+|||+|.++.
T Consensus 25 ~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~ 104 (266)
T 3teb_A 25 ILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSNSHIGFGKYNEGVAVITRHKIK 104 (266)
T ss_dssp HHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEEEEEEEECSTTEEEEEEEEESSCCS
T ss_pred HHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEEEeccccCccccCCeEEEEECceec
Confidence 3567899999999999999632 1233332212357765332 2 2335699999999752
Q ss_pred cceeeeccCcCCCCCCCC-CcEEEEEe--C--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCEEEEcc
Q 023207 66 PKKVSFSLEKTALKYEPD-GRVILAEF--E--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGD 140 (285)
Q Consensus 66 ~~~~~~~l~~~~~~~d~~-gR~l~~~~--~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~p~Il~GD 140 (285)
.. ....++........+ .+++.+.+ . .+.|+|+|+++.....+ .|..+++.|.+++.. ..|+|||||
T Consensus 105 ~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~-----~r~~q~~~l~~~~~~--~~~~il~GD 176 (266)
T 3teb_A 105 AE-DEFYCTFAQSVRTISARRIVSITINYEGQDIEFYSCHMNLPNCETE-----DMGKNIQTILNRTQN--SNLKILMGD 176 (266)
T ss_dssp EE-EEEECSSCCCTTCTTCCEEEEEEEEETTEEEEEEEEECCCTTCTTC-----CHHHHHHHHHTSSCS--CCEEEEEEE
T ss_pred Cc-eeEEeCCCCCCCCcccceEEEEEEEeCCeEEEEEEecCCCccCChH-----HHHHHHHHHHHHHhc--CCcEEEEeE
Confidence 21 123333210011112 33455555 2 69999999988643211 144455566555542 789999999
Q ss_pred cCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCC
Q 023207 141 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK 220 (285)
Q Consensus 141 FN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~ 220 (285)
||+.+... ...++.++..+ |.|+|+..++.. .++||....+ .
T Consensus 177 fN~~~~~~---------------------------------~~~~~~l~~~~-l~d~~~~~~~~~---~~~t~~~~~~-~ 218 (266)
T 3teb_A 177 FNTDAIGN---------------------------------VAAYENILSQG-LFDTYVMAEKKD---DGITVDKSIH-G 218 (266)
T ss_dssp CCCCTTTC---------------------------------HHHHHHHHTTT-CEEHHHHCSEEC---CCCCEECC----
T ss_pred CCCCCCCC---------------------------------CcHHHhhcccc-ccchHHhhcccc---CCccccCccC-C
Confidence 99976210 02345555545 999999887754 3577743211 1
Q ss_pred c--CCccceEEEEEeChhhHhhheeeEEccCccccCCCCCCCcccEEEEEee
Q 023207 221 Y--RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 270 (285)
Q Consensus 221 ~--~~~~~RID~i~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 270 (285)
| ...+.||||||+++.+. +.++.+..... .....|||+||+++|++
T Consensus 219 ~~~~~~~~riD~i~~s~~~~--~~~~~v~~~~~--~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 219 WDNDKAKKRLDYIFSNKELK--VKESKVIFNNK--NKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp ---CTTEECCEEEEESSCCC--EEEEEEESSSS--SSCCCSSSCEEEEEECC
T ss_pred cCcCCcCCeeEEEEeCCCeE--EEEEEEEeCCC--CCCCcCCccCEEEEEEC
Confidence 1 13568999999999876 77888886432 12578999999999874
No 15
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.93 E-value=2.8e-25 Score=190.32 Aligned_cols=211 Identities=17% Similarity=0.150 Sum_probs=131.2
Q ss_pred hhhhhhhcCCCeEEEehhhhhHhhhcCCCCCCCceEEEeccC--CCceeEEEEEecc-CCccee-eeccCcCCCCC----
Q 023207 9 APKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLAD--SKYAGTALLVKKC-FQPKKV-SFSLEKTALKY---- 80 (285)
Q Consensus 9 ~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~~gy~~~~~~~~--~~~~GvaIlsr~~-~~~~~~-~~~l~~~~~~~---- 80 (285)
+.++|+.++||||||||+.......+... .||.++..... .+..|+|||+|.. +..... ...++......
T Consensus 27 i~~~i~~~~~DIv~LQEv~~~~~~~l~~~--l~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (257)
T 3l1w_A 27 VCQLINFHDWSLCCIQEVRPNQVRDLKAY--TTFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHP 104 (257)
T ss_dssp HHHHHHHHCCSEEEEEEECHHHHHHHHHH--SSSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCT
T ss_pred HHHHHHHcCCCEEEEeCCCHHHHHHHHhc--CCCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccc
Confidence 77899999999999999986554555432 38976654322 3467999999954 211221 12222100000
Q ss_pred -CCCCcEEE-EEe------CCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh-cCCCCEEEEcccCccCCCCcCC
Q 023207 81 -EPDGRVIL-AEF------ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVS 151 (285)
Q Consensus 81 -d~~gR~l~-~~~------~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~-~~~~p~Il~GDFN~~~~~~D~~ 151 (285)
....|.+. +.+ ..+.|+|+|+++... ..|..++..|.+++.+ ....|+|||||||+.+..
T Consensus 105 ~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~~-------~~r~~q~~~l~~~i~~~~~~~pvil~GDfN~~~~~---- 173 (257)
T 3l1w_A 105 EAGCPRIALWGLFKETTQNTPFLVINVHLDHISA-------HARLAGMTVILEELHDKIAQYPTLLMGDFNAESGE---- 173 (257)
T ss_dssp TCSSCCEEEEEEEEETTCSSCEEEEEEECCSSCH-------HHHHHHHHHHHHHTHHHHHHSCEEEEEECCCCTTS----
T ss_pred cccccceeEEEEEEEcCCCCEEEEEEeCCCCCCH-------HHHHHHHHHHHHHHHHHcCCCCEEEEeeCCCCCCc----
Confidence 12456443 433 269999999987542 1355566677776652 222399999999996632
Q ss_pred ChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCcCCccceEEEE
Q 023207 152 HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYF 231 (285)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i 231 (285)
..++ ++..+ |.|+|+..++.. ..+||++.......+.+.|||||
T Consensus 174 -------------------------------~~~~-~l~~~-l~d~~~~~~~~~---~~~t~~~~~~~~~~~~~~riD~i 217 (257)
T 3l1w_A 174 -------------------------------EVHQ-LVQKK-FQDSKNLATHYG---PRGTFQNFTYTKPWAELEEIDYI 217 (257)
T ss_dssp -------------------------------HHHH-HHTTT-CEEGGGTSEEES---CSCCBCTTCTTCCGGGCBCCEEE
T ss_pred -------------------------------HHHH-Hhhhh-ccchhhhhcccC---CCCcccCCcccCCCCCCCceeEE
Confidence 0122 34444 999998776543 46788764321112235899999
Q ss_pred EeChhhHhhheeeEEccCccccCCCCCCCcccEEEEEeeCCC
Q 023207 232 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 273 (285)
Q Consensus 232 ~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~~~ 273 (285)
|+ +.+. +.++.+..... .....|||+||+++|.+...
T Consensus 218 ~~-~~~~--~~~~~v~~~~~--~~~~~SDH~pv~~~l~~~~~ 254 (257)
T 3l1w_A 218 YV-KGWQ--VQQTASLTDSI--DGRFPSDHFPLEAEVAGENL 254 (257)
T ss_dssp EE-ESEE--EEEEEECCCCB--TTBCSSSBCCEEEEEEEC--
T ss_pred EE-CCcE--EEEEEEeccCc--CCcccCCcceEEEEEEEEeE
Confidence 99 6654 67888876321 12478999999999998653
No 16
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.92 E-value=1.8e-24 Score=183.77 Aligned_cols=214 Identities=19% Similarity=0.167 Sum_probs=120.3
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCCCCCCceEEEeccCCCceeEEEEEeccCCcceeeeccCcCCCCCCCCCc-E
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-V 86 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~~gy~~~~~~~~~~~~GvaIlsr~~~~~~~~~~~l~~~~~~~d~~gR-~ 86 (285)
.+.++|++++||||||||+.......+.. .+.+|.++.. +..+. |.+++++++..+......... .....++ +
T Consensus 31 ~i~~~i~~~~pDIi~LQEv~~~~~~~l~~-~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~ 104 (256)
T 4gz1_A 31 GVCSCLALYSPDVVFLQEVIPPYCAYLKK-RAASYTIITG-NEEGY-FTAILLKKGRVKFKSQEIIPF---PNTKMMRNL 104 (256)
T ss_dssp HHHHHHHHHCCSEEEEEEECHHHHHHHHH-HCTTEEEEES-CSSSS-EEEEEEETTTEEEEEEEEEEC---TTCSSCCEE
T ss_pred HHHHHHHHcCCCEEEEEcCCHHHHHHHHh-hccccceeec-cccCC-ceEEEEEeccccceecccccC---CcccccceE
Confidence 47789999999999999998654444432 2234443332 33334 455665553211111111110 0111223 3
Q ss_pred EEEE--eC--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc-CCCCEEEEcccCccCCCCcCCChhhhhhhhc
Q 023207 87 ILAE--FE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKL 161 (285)
Q Consensus 87 l~~~--~~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~ 161 (285)
+.+. .. .+.|+|+|+++.... ...|.+++..+.+++++. .+.|+|||||||+.+...+
T Consensus 105 ~~~~~~~~~~~~~v~~~Hl~~~~~~-----~~~~~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~------------ 167 (256)
T 4gz1_A 105 LCVNVSLGGNEFCLMTSHLESTREH-----SAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVI------------ 167 (256)
T ss_dssp EEEEEEETTEEEEEEECBCCCSGGG-----HHHHHHHHHHHHHHHHHSCTTSEEEEEEECCCCHHHHH------------
T ss_pred EEEEEEeCCEEEEEEeecccccccc-----hhhhhHHHHHHhhhhhhccCcceEEEeCccCCCcchhh------------
Confidence 3333 33 699999999876532 113445566666777653 5689999999998543210
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCC---cCCccceEEEEEeChhhH
Q 023207 162 NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK---YRGKRMRIDYFIVSEELK 238 (285)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~---~~~~~~RID~i~~s~~l~ 238 (285)
...... .++.|+|+..++... ..+||....... ....+.||||||+++...
T Consensus 168 -----------------------~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~ 221 (256)
T 4gz1_A 168 -----------------------KCGGLP-DNVFDAWEFLGKPKH--CQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEG 221 (256)
T ss_dssp -----------------------HHTCSC-TTEEEHHHHTTCCGG--GSCSEETTTCCTTCCSSCCEECCEEEEEECC-C
T ss_pred -----------------------hhhhcc-chhhhHHHHhcCCCC--CCcccccCCCCccccCCCCCccEEEEEEECCcc
Confidence 111222 348888887765432 356665432211 124578999999987643
Q ss_pred h-hheeeEEccCccccCCCCCCCcccEEEEEee
Q 023207 239 D-RIIACEMQGHGIELEGFYGSDHCPVSLELSE 270 (285)
Q Consensus 239 ~-~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 270 (285)
. ....+.+...........+|||+||+++|++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 222 HLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp SEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred ceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 2 1234444321110113568999999999986
No 17
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.92 E-value=2e-24 Score=181.69 Aligned_cols=212 Identities=16% Similarity=0.167 Sum_probs=123.6
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCCCCCCceEEEeccCCCceeEEEEEeccCCcceee-eccCcCCCCCCCCCc-
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS-FSLEKTALKYEPDGR- 85 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~~gy~~~~~~~~~~~~GvaIlsr~~~~~~~~~-~~l~~~~~~~d~~gR- 85 (285)
.+.++|++++||||||||+.......+.. .+ ++..++..+..+.+|++++++.++...... ...+ ....++
T Consensus 25 ~i~~~i~~~~pDIi~LQEv~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 97 (250)
T 4f1h_A 25 GLCSYLALYTPDVVFLQELIPAYVQYLKK-RA-VSYLFFEGSDDGYFTGIMLRKSRVKFLESEIICFP-----TTQMMRN 97 (250)
T ss_dssp HHHHHHHHHCCSEEEEEEECHHHHHHHHH-HC-TTEEEEESCSSSSEEEEEEETTTCEEEEEEEEECT-----TCSSCCE
T ss_pred HHHHHHHHcCCCEEEEEeCCHHHHHHHHH-hc-cCceeecccccccCceeEEeeccccceeccccccc-----Cccccce
Confidence 47889999999999999998654444432 12 333344434455667777776654222211 1222 122333
Q ss_pred EEEEEe--C--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc-CCCCEEEEcccCccCCCCcCCChhhhhhhh
Q 023207 86 VILAEF--E--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAK 160 (285)
Q Consensus 86 ~l~~~~--~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~ 160 (285)
++.+.+ . .+.++++|+++.... ...|..++..+.+++++. ...|+|||||||+.+...+..
T Consensus 98 ~~~~~~~~~~~~~~v~~~hl~~~~~~-----~~~r~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~~--------- 163 (250)
T 4f1h_A 98 LLIAQVTFSGQKLYLMTSHLESCKNQ-----SQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANV--------- 163 (250)
T ss_dssp EEEEEEEETTEEEEEEECBCCCSGGG-----HHHHHHHHHHHHHHHHHSCTTEEEEEEEECCCCHHHHHTT---------
T ss_pred EEEEEEecCCcEEEEecccccccccc-----HHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCcchhhh---------
Confidence 333333 3 689999999876532 123555666777777653 567999999999865321111
Q ss_pred cCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCC---CcCCccceEEEEEeChhh
Q 023207 161 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG---KYRGKRMRIDYFIVSEEL 237 (285)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~---~~~~~~~RID~i~~s~~l 237 (285)
.... ..+.|+|+..++... ..++|....+. .....+.||||||+++..
T Consensus 164 --------------------------~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~ 214 (250)
T 4f1h_A 164 --------------------------GGLP-AGVCDVWEQLGKQEH--CRYTWDTKANSNKTVPYVSRCRFDRIFLRSAK 214 (250)
T ss_dssp --------------------------TSSC-TTEEEHHHHTTCCGG--GCCSEETTTCCSSCCSSCCEECCEEEEEECCT
T ss_pred --------------------------hhcc-ccchHHHHHhcCCcc--CCcccccccCCCCCcCCCCCccEEEEEEeCcc
Confidence 1122 237888887766543 34566543211 112456899999998875
Q ss_pred Hhhh---eeeEEccCccccCCCCCCCcccEEEEEe
Q 023207 238 KDRI---IACEMQGHGIELEGFYGSDHCPVSLELS 269 (285)
Q Consensus 238 ~~~v---~~~~i~~~~~~~~~~~~SDH~PV~~~l~ 269 (285)
.... ....+...........+|||+||+++|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 215 TAPPVTPDHMALIGMEKLDCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp TSCCCEEEEEEEECCSCCTTSSCSCSBCEEEEEEE
T ss_pred cccceeeeEEEEecccccCCCCCCCcccCEEEEEe
Confidence 4321 2233322111011356899999999996
No 18
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.92 E-value=1.8e-24 Score=186.38 Aligned_cols=214 Identities=18% Similarity=0.213 Sum_probs=131.1
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCCCCCCceEEEeccC---CCceeEEEEEecc-CCccee-eeccCcCCC----
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLAD---SKYAGTALLVKKC-FQPKKV-SFSLEKTAL---- 78 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~~gy~~~~~~~~---~~~~GvaIlsr~~-~~~~~~-~~~l~~~~~---- 78 (285)
.+.++|+.++||||||||+.......+.. .+.+|.++..... ....|+|||+|.. +..... ...++....
T Consensus 29 ~i~~~i~~~~~DIv~LQEv~~~~~~~l~~-~l~~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~ 107 (267)
T 3g6s_A 29 RVCQFIKDHELDIVGMQEVLHNQFQDLRA-GLPEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGM 107 (267)
T ss_dssp HHHHHHHHTTCSEEEEESBCHHHHHHHHH-HCTTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTC
T ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHH-hccCCcEEEecCCCCCcCCceeEEEEEccceEEEecccEecCCCCCcccc
Confidence 46789999999999999998654445432 2368877654221 2234599995532 111111 122321000
Q ss_pred -CC-CCCCcEE-EEEeC------CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc-CCCCEEEEcccCccCCCC
Q 023207 79 -KY-EPDGRVI-LAEFE------TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEI 148 (285)
Q Consensus 79 -~~-d~~gR~l-~~~~~------~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~p~Il~GDFN~~~~~~ 148 (285)
.. ....|.+ .+.+. .+.|+|+|+++... ..|.++.+.|.+++.+. .+.|+|||||||+.+.+
T Consensus 108 ~~~~~~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~~-------~~R~~q~~~l~~~l~~~~~~~pvIl~GDfN~~~~~- 179 (267)
T 3g6s_A 108 MGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVGE-------EARRQSALLIIRKIKEIVGERPAVVTGDFNVTDAS- 179 (267)
T ss_dssp CCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCH-------HHHHHHHHHHHHHHHHHTTTSCEEEEEECSSCTTS-
T ss_pred ccccccCcceEEEEEEEEcCCCCEEEEEEeCCCCCCH-------HHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCCC-
Confidence 00 1234533 33332 69999999977542 13555666777777653 47899999999996642
Q ss_pred cCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcC-CeeeeeeccCCCCCCceeeeeeCCCCCCcCCccce
Q 023207 149 DVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG-RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMR 227 (285)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~-~l~D~~r~~~p~~~~~~~~T~~~~~~~~~~~~~~R 227 (285)
..++.+...+ +|.|+|+..++... ..+||+...... .+.+.|
T Consensus 180 ----------------------------------~~~~~l~~~~~~l~d~~~~~~~~~~--~~~T~~~~~~~~-~~~~~r 222 (267)
T 3g6s_A 180 ----------------------------------DAYETITTNEFVMKDAYKTAARVTG--VDYTFHDFARIP-AEDCEK 222 (267)
T ss_dssp ----------------------------------HHHHHHHSSSSCCEEHHHHCSEEEE--CSCSBCTTTTSC-GGGCCC
T ss_pred ----------------------------------HHHHHhhcCCcchhhhHhhhccccC--CCCCEeCCCCCC-CCCCCc
Confidence 1133333332 39999987753221 357887643210 124589
Q ss_pred EEEEEeChhhHhhheeeEEccCccccCCCCCCCcccEEEEEeeCC
Q 023207 228 IDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 272 (285)
Q Consensus 228 ID~i~~s~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~~ 272 (285)
|||||+++++. +.++.+..... .. .+|||+||++++....
T Consensus 223 iD~I~~s~~~~--~~~~~v~~~~~--~~-~~SDH~PV~a~~~~~~ 262 (267)
T 3g6s_A 223 IDFIFVTPQVL--VKSCEIPAEVP--EA-LLSDHNPQLADLELEH 262 (267)
T ss_dssp CEEEEECTTSE--EEEEEECCCCS--SS-CCCSBCCEEEEEEEC-
T ss_pred EeEEEeCCCce--EEEEEEecCCC--CC-CCCCcccEEEEEEecc
Confidence 99999999865 77888886421 12 6799999999998654
No 19
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.5e-23 Score=183.93 Aligned_cols=215 Identities=21% Similarity=0.193 Sum_probs=130.6
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCCCCCCceEEEeccC---CCceeEEEE---EeccCCcceeeeccCcCC--CC
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSPPFKNYQIWWSLAD---SKYAGTALL---VKKCFQPKKVSFSLEKTA--LK 79 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~~gy~~~~~~~~---~~~~GvaIl---sr~~~~~~~~~~~l~~~~--~~ 79 (285)
.+.++|+..+||||||||+.......+.. .+.+|.++..... ....++||| +|.++... ..+.++... ..
T Consensus 34 ~i~~~i~~~~~DIv~LQEv~~~~~~~l~~-~l~~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~-~~~~l~~~p~~~~ 111 (298)
T 3mpr_A 34 VIAQMVQYHDFDIFGTQECFLHQLKDMKE-ALPGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEK-GDFWLSETPDVPS 111 (298)
T ss_dssp HHHHHHHHTTCSEEEEESBCHHHHHHHHH-HSTTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEE-EEEESSSSTTSSC
T ss_pred HHHHHHHHcCCCEEEEeCCCHHHHHHHHH-hCCCCcEEEEecCCCCCCCceeEEEEecCceEEEec-cEEEccCCCCccC
Confidence 47788999999999999998654455442 2467876544211 123459999 55543111 122232100 00
Q ss_pred --CC-CCCcEE-EEEeC------CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc---CCCCEEEEcccCccCC
Q 023207 80 --YE-PDGRVI-LAEFE------TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHE 146 (285)
Q Consensus 80 --~d-~~gR~l-~~~~~------~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~---~~~p~Il~GDFN~~~~ 146 (285)
.+ ...|.+ .+.+. .+.|+|+|+++.+. ..|.+++..|.+++.+. .+.|+|||||||+.+.
T Consensus 112 ~~~~~~~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~~-------~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~ 184 (298)
T 3mpr_A 112 KGWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDHIGK-------KARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQT 184 (298)
T ss_dssp CCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCH-------HHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTT
T ss_pred cccccccCceeEEEEEEEcCCCCEEEEEEecCCCCCH-------HHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Confidence 01 134543 34432 69999999985442 13556666777777653 4689999999999664
Q ss_pred CCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCCCcCCccc
Q 023207 147 EIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 226 (285)
Q Consensus 147 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~~~~~~ 226 (285)
+ ..++.+...++|.|+|........ ..+||+..... .....
T Consensus 185 ~-----------------------------------~~~~~l~~~g~l~D~~~~~~~~~~--~~~T~~~~~~~--~~~~~ 225 (298)
T 3mpr_A 185 H-----------------------------------QSYDAFVSKGVLCDSYEKCDYRYA--LNGTFNNFDPN--SFTES 225 (298)
T ss_dssp S-----------------------------------HHHHHHHTTSSSEEHHHHCSEEEC--SSCSBCTTCTT--CCCSC
T ss_pred C-----------------------------------HHHHHHhcCCcchhhHhhhcccCC--CCCCccCCCCC--CCCCc
Confidence 2 124445554459999986653221 24688764221 12468
Q ss_pred eEEEEEeChhhHhhheeeEEccCccc----------------------cCCCCCCCcccEEEEEeeCC
Q 023207 227 RIDYFIVSEELKDRIIACEMQGHGIE----------------------LEGFYGSDHCPVSLELSEAS 272 (285)
Q Consensus 227 RID~i~~s~~l~~~v~~~~i~~~~~~----------------------~~~~~~SDH~PV~~~l~~~~ 272 (285)
||||||+++++. +.++.|+..... ......|||+||++++....
T Consensus 226 rID~Il~s~~~~--v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~~~ 291 (298)
T 3mpr_A 226 RIDHIFVSPSFH--VKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVFDL 291 (298)
T ss_dssp CCEEEEECTTSE--EEEEEECCCCEEEECC----------------CCEEEECSSSBCCEEEEEEECS
T ss_pred eEEEEEeCCCee--EEEEEEecCccccCCCcccccCcccchhhhccChhhcccCCCCCcEEEEEecch
Confidence 999999999875 677777643110 00015699999999997643
No 20
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.88 E-value=2e-22 Score=176.35 Aligned_cols=215 Identities=14% Similarity=0.047 Sum_probs=113.4
Q ss_pred hhhhcCCCeEEEehhhhhH-hhhcCCCCC--CCceEEEec---------------cCCCceeEEEEEeccCCcceeeecc
Q 023207 12 NHQELKDDTKASREEKLIL-MRALSSPPF--KNYQIWWSL---------------ADSKYAGTALLVKKCFQPKKVSFSL 73 (285)
Q Consensus 12 ~l~~~~~DIv~LQE~~~~~-~~~l~~~~~--~gy~~~~~~---------------~~~~~~GvaIlsr~~~~~~~~~~~l 73 (285)
.+...+||||||||+.... ...+...+. .+|.+.+.. ...+.+|+|||||+|+.... ...+
T Consensus 41 ~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~ailSr~pi~~~~-~~~~ 119 (301)
T 1zwx_A 41 ADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKS-QHIF 119 (301)
T ss_dssp SGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCSEEEC-----CCBCCCCEEEESSCEEEEE-EEEC
T ss_pred hhccCCCCEEEEeccccHHHHHHHHHHHhhcCCccccccCCccccccccccccccccccCCCEEEEecCCcccce-EEEe
Confidence 4567899999999997532 111110011 122211110 01245799999999752211 1223
Q ss_pred CcCCCCCCCCCc-EEEEEeC----CEEEEEEEeeCCCCCcc-hhhHHHHHHHHHHHHHHHHhc---CCCCEEEEcccCcc
Q 023207 74 EKTALKYEPDGR-VILAEFE----TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVS 144 (285)
Q Consensus 74 ~~~~~~~d~~gR-~l~~~~~----~~~v~~vy~p~~~~~~~-~~~~~~r~~~~~~l~~~l~~~---~~~p~Il~GDFN~~ 144 (285)
+..........| ++.+.+. .+.|+|+|+++...... ......|..+++.|.+++++. .+.|+|||||||+.
T Consensus 120 ~~~~~~~~~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~ 199 (301)
T 1zwx_A 120 QRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVN 199 (301)
T ss_dssp SCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCC
T ss_pred cCCCCcccccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCC
Confidence 210000011234 4555542 69999999988753100 012334677778888888752 45799999999997
Q ss_pred CCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCee--eeeeccCCCCCCceeeeeeCCCCC---
Q 023207 145 HEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI--DAYRFLHKEKDMDCGFSWSGNPIG--- 219 (285)
Q Consensus 145 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~--D~~r~~~p~~~~~~~~T~~~~~~~--- 219 (285)
+... .++.++...++. |+|+. ..+||....+.
T Consensus 200 ~~~~-----------------------------------~~~~l~~~~~~~~~d~~~g--------~~~T~~~~~n~~~~ 236 (301)
T 1zwx_A 200 YGTD-----------------------------------EYHDMLKLLNVSSPANFNG--------QMATWDPTTNSMLK 236 (301)
T ss_dssp TTSH-----------------------------------HHHHHHHHHTBCCCTTCCT--------TSCSBCTTTCHHHH
T ss_pred CCcH-----------------------------------HHHHHHHHcCCCCCccccC--------CCceECCccCcccc
Confidence 6431 133333322355 77751 23566421110
Q ss_pred -Cc-CCccceEEEEEeChhhHhhhe-----------eeEEccCccccCCCCCCCcccEEEEEee
Q 023207 220 -KY-RGKRMRIDYFIVSEELKDRII-----------ACEMQGHGIELEGFYGSDHCPVSLELSE 270 (285)
Q Consensus 220 -~~-~~~~~RID~i~~s~~l~~~v~-----------~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 270 (285)
.+ ...+.||||||+++....... ...+...........+|||+||+++|.+
T Consensus 237 ~t~~~~~~~rID~I~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 237 ESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGFTDN 300 (301)
T ss_dssp HHCTTSCCBCCEEEEEBTTSCCCSCEEEEECCCCCCCEEEEETTEEEEECCSSSSCCEEEEEC-
T ss_pred ccCCCCCcceEeEEEEeCCCCCcccccceeeccccccceeecccCCccccCCCCCccEEEEEec
Confidence 01 123589999999987542110 1122110000001378999999999976
No 21
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.85 E-value=3.9e-21 Score=168.41 Aligned_cols=221 Identities=14% Similarity=0.104 Sum_probs=114.8
Q ss_pred hhhhcCCCeEEEehhhhhHh-hhc----CCCC-----------CCCceEEEec---cCCCceeEEEEEeccCCcceeeec
Q 023207 12 NHQELKDDTKASREEKLILM-RAL----SSPP-----------FKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSFS 72 (285)
Q Consensus 12 ~l~~~~~DIv~LQE~~~~~~-~~l----~~~~-----------~~gy~~~~~~---~~~~~~GvaIlsr~~~~~~~~~~~ 72 (285)
++...+||||||||+..... ..+ .... ..||...+.. ...+.+|+|||||.|+.... ...
T Consensus 40 ~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ailSr~pi~~~~-~~~ 118 (306)
T 2ddr_A 40 ADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKI-QYV 118 (306)
T ss_dssp CSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTSCCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEEE-EEE
T ss_pred HhhccCCCEEEEEeecCHHHHHHHHHHHhhhCCceeeccCcccccccccccccccccCccCCeEEEEECCCccccc-EEE
Confidence 46788999999999975421 111 1100 0133322211 12346799999999753211 222
Q ss_pred cCcCCCCCC-CCCc-EEEEEe--C--CEEEEEEEeeCCCCCcc-hhhHHHHHHHHHHHHHHHHhc---CCCCEEEEcccC
Q 023207 73 LEKTALKYE-PDGR-VILAEF--E--TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLN 142 (285)
Q Consensus 73 l~~~~~~~d-~~gR-~l~~~~--~--~~~v~~vy~p~~~~~~~-~~~~~~r~~~~~~l~~~l~~~---~~~p~Il~GDFN 142 (285)
++.. ...+ ...| ++.+.+ . .+.|+|+|+++...... ......|..+++.|.+++... .+.|+|||||||
T Consensus 119 ~~~~-~~~~~~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN 197 (306)
T 2ddr_A 119 FAKG-CGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMN 197 (306)
T ss_dssp CSCC-C----CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECC
T ss_pred cCCC-CCcchhcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 3210 0011 2344 444554 2 59999999987642100 012234677778888888752 357999999999
Q ss_pred ccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHhhhhcCCeeeeeeccCCCCCCceeeeeeCCCCC---
Q 023207 143 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG--- 219 (285)
Q Consensus 143 ~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~--- 219 (285)
+.+...|.... ..++.++...++.|. . +.. ..+||....+.
T Consensus 198 ~~~~~~d~~~s-----------------------------~~~~~l~~~~~~~~~--~--~~g---~~~T~~~~~n~~~~ 241 (306)
T 2ddr_A 198 VNKINAENNND-----------------------------SEYASMFKTLNASVP--S--YTG---HTATWDATTNSIAK 241 (306)
T ss_dssp CCCTTTSSCTT-----------------------------SHHHHHHHHHTBCCC--E--EEE---CSCSBCTTTCHHHH
T ss_pred CCcccccccCC-----------------------------HHHHHHHHhcCCCCc--c--cCC---CCcccCCCCCcccc
Confidence 98754332110 013333332235442 1 111 24787532110
Q ss_pred -Cc-CCccceEEEEEeChhhHhhhe--e---------eEEccCccccCCCCCCCcccEEEEEee
Q 023207 220 -KY-RGKRMRIDYFIVSEELKDRII--A---------CEMQGHGIELEGFYGSDHCPVSLELSE 270 (285)
Q Consensus 220 -~~-~~~~~RID~i~~s~~l~~~v~--~---------~~i~~~~~~~~~~~~SDH~PV~~~l~~ 270 (285)
.+ .....||||||+++.+..... . ..+...........+|||+||+++|.+
T Consensus 242 ~t~~~~~~~rID~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 242 YNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISM 305 (306)
T ss_dssp HHCTTSCCBCCEEEEEBTTSCCCSEEEEEECCCCCCCEEEEETTEEEEECCSCSSCCEEEEEEC
T ss_pred ccCCCCCcceeeEEEEeCCCCCcccccceeeccccccceeccccccccccCCCCCcceeEEEEe
Confidence 01 123689999999987642210 0 111100000001478999999999986
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.83 E-value=7.4e-20 Score=161.89 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=75.2
Q ss_pred hhhhhhcCCCeEEEehhhhh-----HhhhcCCCCCCCceEEEec-cCCC--------------ceeEEEEEeccCCccee
Q 023207 10 PKNHQELKDDTKASREEKLI-----LMRALSSPPFKNYQIWWSL-ADSK--------------YAGTALLVKKCFQPKKV 69 (285)
Q Consensus 10 ~~~l~~~~~DIv~LQE~~~~-----~~~~l~~~~~~gy~~~~~~-~~~~--------------~~GvaIlsr~~~~~~~~ 69 (285)
...+...+||||||||+... +...+.. .-+|.+.... +..+ ..|++||||.|+....
T Consensus 58 ~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~--~~py~~~~~g~~~~~~~~~~~~y~~~~~~~~G~~ilSr~Pi~~~~- 134 (317)
T 3i41_A 58 GQSSYIKNNDVVIFNEAFDNGASDKLLSNVKK--EYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKI- 134 (317)
T ss_dssp HHCSTTSSCSEEEEEEECSHHHHHHHHHHTTT--TCCEECCCTTSCSTTCSEEEESCCSSCSBCCCCEEEESSCEEEEE-
T ss_pred HHHhhccCCCEEEEEeeccHHHHHHHHHHHHH--hCCcccccCCccccCccCcccccccccccCCccEEEeCCCCccce-
Confidence 34566789999999999542 1222321 1123211110 1100 1599999999753222
Q ss_pred eeccCcCCCCCC-CCCc-EEEEEe--C--CEEEEEEEeeCCCCCcc-hhhHHHHHHHHHHHHHHHHhc---CCCCEEEEc
Q 023207 70 SFSLEKTALKYE-PDGR-VILAEF--E--TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCG 139 (285)
Q Consensus 70 ~~~l~~~~~~~d-~~gR-~l~~~~--~--~~~v~~vy~p~~~~~~~-~~~~~~r~~~~~~l~~~l~~~---~~~p~Il~G 139 (285)
...++.. ...| ...| ++.+.+ . .+.|+|+|+++...... ......|..++..|.++++.. .+.|+||||
T Consensus 135 ~~~~~~~-~~~d~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~G 213 (317)
T 3i41_A 135 QHVFKSG-CGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGG 213 (317)
T ss_dssp EEECSCC-CSSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred eEECCCC-CCcccccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 2223210 0111 1334 333443 3 69999999987653100 012335777788888888762 478999999
Q ss_pred ccCccCC
Q 023207 140 DLNVSHE 146 (285)
Q Consensus 140 DFN~~~~ 146 (285)
|||+.+.
T Consensus 214 DfN~~~~ 220 (317)
T 3i41_A 214 DLNVNKG 220 (317)
T ss_dssp ECCCCTT
T ss_pred ECCCCCC
Confidence 9999774
No 23
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=1.1e-19 Score=177.61 Aligned_cols=238 Identities=14% Similarity=0.111 Sum_probs=44.3
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHhhhcCCCCC--CCceEEEec----------cCCCceeEEEE---EeccCCcceeeec
Q 023207 8 DAPKNHQELKDDTKASREEKLILMRALSSPPF--KNYQIWWSL----------ADSKYAGTALL---VKKCFQPKKVSFS 72 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~~~l~~~~~--~gy~~~~~~----------~~~~~~GvaIl---sr~~~~~~~~~~~ 72 (285)
.+.+.|+.++|||||||||.......+....+ .||..++.. +..+..|+||| +|+++.... ...
T Consensus 429 ~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~~~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~-~~~ 507 (727)
T 4b8c_D 429 KLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKD-AMD 507 (727)
T ss_dssp HHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC----------------CCCCEEEC---------------
T ss_pred HHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEeccCCcccccccCCCCcccEEEEEEcccceEeeee-EEe
Confidence 36788999999999999998643333322223 378765421 12246799999 455431110 111
Q ss_pred cCcCC-------CCCCCCC------cEE-EEEe------CCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh---
Q 023207 73 LEKTA-------LKYEPDG------RVI-LAEF------ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--- 129 (285)
Q Consensus 73 l~~~~-------~~~d~~g------R~l-~~~~------~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~--- 129 (285)
+.... ...+... |+. .+.+ ..+.|+|+|++......+ .|......|.+++.+
T Consensus 508 ~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~-----~R~~Qa~~l~~~l~~~~~ 582 (727)
T 4b8c_D 508 FSGAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIPSGDTIWAVTTHLHWDPKFND-----VKTFQVGVLLDHLETLLK 582 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred echhhhhchhhcccHHHHhhcccCCcEEEEEEEeecCCCceEEEEEeccccCCCCCc-----hHHHHHHHHHHHHHHHHH
Confidence 11000 0001011 222 2322 258899999987532111 132233333333322
Q ss_pred ----------cCCCCEEEEcccCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHh-----hhhcCCe
Q 023207 130 ----------CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA-----ILKEGRL 194 (285)
Q Consensus 130 ----------~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~-----~l~~~~l 194 (285)
..+.|+|||||||+.+.+. .+... ..+.+. .....+...+.. +.....+
T Consensus 583 ~~~~~~~~~~~~~~pvIl~GDFNs~P~s~-~~~~l------~~~~v~---------~~~d~~~~~~~~~~~~~~~~~~~l 646 (727)
T 4b8c_D 583 EETSHNFRQDIKKFPVLICGDFNSYINSA-VYELI------NTGRVQ---------IHQEGNGRDFGYMSEKNFSHNLAL 646 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcccccccccCCCceEEecccCCCCCCc-ceEee------ecCCcC---------cchhhccccccccccccccccccc
Confidence 1357999999999988642 11110 000000 000000000000 1111125
Q ss_pred eeeeeccCCCCCCceeeeeeCCCCCCcCCccceEEEEEeChhhHhhheeeEEcc-------CccccCCCCCCCcccEEEE
Q 023207 195 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG-------HGIELEGFYGSDHCPVSLE 267 (285)
Q Consensus 195 ~D~~r~~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i~~s~~l~~~v~~~~i~~-------~~~~~~~~~~SDH~PV~~~ 267 (285)
.++|.... . ..||.+.. +...+|||||++++.........+.. .+.+ ...++|||+||+++
T Consensus 647 ~say~~~~-~----~~~T~~~~------~~~~~LDyI~~S~~~l~~~~~~~~~~~~~~~~~~~~P-~~~~pSDH~pV~a~ 714 (727)
T 4b8c_D 647 KSSYNCIG-E----LPFTNFTP------SFTDVIDYIWFSTHALRVRGLLGEVDPEYVSKFIGFP-NDKFPSDHIPLLAR 714 (727)
T ss_dssp --------------CCCSBCCS------SCCBCC-----------------CCCHHHHTTCSSSS-BTTBCSSBCC----
T ss_pred cchhhcCC-C----CccccccC------ccCCeeeeEEEcCCceeEeeccCCCCHHHhcccCCCC-CCCCCCCceeEEEE
Confidence 56664321 1 23454431 22467999999987542211111111 0111 13578999999999
Q ss_pred EeeCCCCchHHh
Q 023207 268 LSEASSDSEKRE 279 (285)
Q Consensus 268 l~~~~~~~~~~~ 279 (285)
|.+.+..++.||
T Consensus 715 f~l~~~~~~~~~ 726 (727)
T 4b8c_D 715 FEFMKTNTGSKK 726 (727)
T ss_dssp ------------
T ss_pred EEEecCCCCccC
Confidence 999877665543
No 24
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.74 E-value=2e-17 Score=140.28 Aligned_cols=126 Identities=11% Similarity=0.036 Sum_probs=75.6
Q ss_pred Chhhhhhh-cCCCeEEEehhhhhHhhhcC--CC----------C--------CCCceE-EEec--cCCCceeEEEEEecc
Q 023207 8 DAPKNHQE-LKDDTKASREEKLILMRALS--SP----------P--------FKNYQI-WWSL--ADSKYAGTALLVKKC 63 (285)
Q Consensus 8 ~~~~~l~~-~~~DIv~LQE~~~~~~~~l~--~~----------~--------~~gy~~-~~~~--~~~~~~GvaIlsr~~ 63 (285)
.+..+|+. .+||||+|||+...-..... .. . -+++.+ |+.. ...+..|+||+||.+
T Consensus 26 ~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~~w~lg~~~r~~~~yiy~~~~d~~~g~~g~AIlSR~~ 105 (261)
T 1sr4_B 26 NVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQ 105 (261)
T ss_dssp HHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCEEEEEEECCCTTTSCSCEEEEESSC
T ss_pred HHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhhhhhcccccCCCceEEEEEeecCCCCccceEEEEccc
Confidence 47788999 88999999999752111111 10 0 013333 3332 123467999999986
Q ss_pred CCcceeeeccCcCCCC-CCCCCcEEEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhc---CC---CCEE
Q 023207 64 FQPKKVSFSLEKTALK-YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SG---KPLI 136 (285)
Q Consensus 64 ~~~~~~~~~l~~~~~~-~d~~gR~l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~---~~---~p~I 136 (285)
+. ..+.++. .. ......++.+.++++.++++|+...+.. + +......|.+++... +. .++|
T Consensus 106 ~~---~v~~l~~--~~~~~~~R~~l~i~i~g~~f~s~Hl~~~~~~-e------a~~~v~~I~~~~~~~~~~~~~~~~~~i 173 (261)
T 1sr4_B 106 AD---EAFIVHS--DSSVLQSRPAVGIRIGTDVFFTVHALATGGS-D------AVSLIRNIFTTFNSSSSPPERRVYSWM 173 (261)
T ss_dssp CS---EEEEECC--CCCSSCCCCEEEEEETTEEEEEEECCTTTTT-T------HHHHHHHHHHHHHC---CGGGGGCEEE
T ss_pred hh---ceEEcCC--CCCCCcCcceEEEEECCeEEEEeCCCCCCCc-h------HHHHHHHHHHHHHhcccCCcccCCcEE
Confidence 42 2232321 01 0123346778888999999999776521 1 233455666766542 34 7999
Q ss_pred EEcccCccC
Q 023207 137 WCGDLNVSH 145 (285)
Q Consensus 137 l~GDFN~~~ 145 (285)
||||||..+
T Consensus 174 i~GDFN~~p 182 (261)
T 1sr4_B 174 VVGDFNRAP 182 (261)
T ss_dssp EEEECSSCH
T ss_pred EEeeCCCCh
Confidence 999999954
No 25
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.74 E-value=2.5e-17 Score=138.24 Aligned_cols=127 Identities=12% Similarity=-0.000 Sum_probs=81.6
Q ss_pred ChhhhhhhcC-CCeEEEehhhhhH------hh----------hcCCC----CCCCceEEEecc---CCCceeEEEEEecc
Q 023207 8 DAPKNHQELK-DDTKASREEKLIL------MR----------ALSSP----PFKNYQIWWSLA---DSKYAGTALLVKKC 63 (285)
Q Consensus 8 ~~~~~l~~~~-~DIv~LQE~~~~~------~~----------~l~~~----~~~gy~~~~~~~---~~~~~GvaIlsr~~ 63 (285)
++..+|+..+ +|||+|||+.... .+ ++... .-+++.+++... ..+.+|+||+||.+
T Consensus 37 ~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w~lGt~srp~~~yiY~~~~D~~~~r~nlAIlSr~~ 116 (262)
T 2f1n_A 37 NVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRR 116 (262)
T ss_dssp HHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSC
T ss_pred cHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHHHHhCCCCCCceEEEEEeeccCCCCceeeEEEEccc
Confidence 4778899888 9999999997421 11 00000 012365443322 34578999999997
Q ss_pred CCcceeeeccCcCCCCCCCCCcEEEEEeCCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHhcCC-----CCEEEE
Q 023207 64 FQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-----KPLIWC 138 (285)
Q Consensus 64 ~~~~~~~~~l~~~~~~~d~~gR~l~~~~~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~-----~p~Il~ 138 (285)
.. + .+-++. .......++.+.++.+.++++|+-..+.. + +.+..+.+.+++..... .|||||
T Consensus 117 ad--e-v~vLp~---~~~~~Rp~lgiri~~~~ff~tHa~a~~g~-d------a~a~v~~I~~~~~~~~~~~~~~~pwii~ 183 (262)
T 2f1n_A 117 AD--E-VFVLSP---VRQGGRPLLGIRIGNDAFFTAHAIAMRNN-D------APALVEEVYNFFRDSRDPVHQALNWMIL 183 (262)
T ss_dssp CS--E-EEEECC---SSTTCCCEEEEEETTEEEEEEECCSSSSC-S------HHHHHHHHHHHHHTCSSHHHHTCEEEEE
T ss_pred cc--c-eEECCC---CCCCCCceEEEEECCEEEEEEEecCCCCc-c------HHHHHHHHHHHHhcCcccccCCCcEEEE
Confidence 53 2 233442 11224457778999999999999876432 2 34456677777765444 599999
Q ss_pred cccCccCCC
Q 023207 139 GDLNVSHEE 147 (285)
Q Consensus 139 GDFN~~~~~ 147 (285)
||||..+++
T Consensus 184 GDFNr~P~s 192 (262)
T 2f1n_A 184 GDFNREPAD 192 (262)
T ss_dssp EECSSCHHH
T ss_pred ecCCCCCcc
Confidence 999997753
No 26
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.69 E-value=2.9e-16 Score=142.31 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=74.6
Q ss_pred ChhhhhhhcCCCeEEEehhhhhHh-hhcCCC-CCCCceEEEec-cC---------CCceeEEEEEecc-CCccee-eecc
Q 023207 8 DAPKNHQELKDDTKASREEKLILM-RALSSP-PFKNYQIWWSL-AD---------SKYAGTALLVKKC-FQPKKV-SFSL 73 (285)
Q Consensus 8 ~~~~~l~~~~~DIv~LQE~~~~~~-~~l~~~-~~~gy~~~~~~-~~---------~~~~GvaIlsr~~-~~~~~~-~~~l 73 (285)
.+.++|..++||||||||+..... +.+... ...||..++.. +. .++.|+|||+|.. ++.+.. .+.+
T Consensus 66 ~i~~~i~~~~pDIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~l 145 (398)
T 3ngq_A 66 GIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEF 145 (398)
T ss_dssp HHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEH
T ss_pred HHHHHHHhcCCCEEEEecccHHHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEec
Confidence 467889999999999999986422 222111 12489876652 22 2467999999875 222211 1222
Q ss_pred CcCC----CCCC-CCCc------E---EEEEeC-----------------CEEEEEEEeeCCCCCcchhhHHHHHHHHHH
Q 023207 74 EKTA----LKYE-PDGR------V---ILAEFE-----------------TFYLLNTYAPNNGWKEEENSFQRRRKWDKR 122 (285)
Q Consensus 74 ~~~~----~~~d-~~gR------~---l~~~~~-----------------~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~ 122 (285)
.... ...+ ...| + +.++.. .+.|+|+|+-...... ..|..+...
T Consensus 146 s~~~~~~s~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~-----~vRl~Q~~~ 220 (398)
T 3ngq_A 146 NQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYS-----DVKLIQTMM 220 (398)
T ss_dssp HHHHHHTCTTCHHHHHTTTTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCH-----HHHHHHHHH
T ss_pred CCCcccccccchhhhcceeeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCH-----HHHHHHHHH
Confidence 1100 0000 0011 1 223322 3889999997643211 124445555
Q ss_pred HHHHHHhc---------------CCCCEEEEcccCccCCC
Q 023207 123 IQEFVLQC---------------SGKPLIWCGDLNVSHEE 147 (285)
Q Consensus 123 l~~~l~~~---------------~~~p~Il~GDFN~~~~~ 147 (285)
|.+.+++. ...|+|||||||+.+++
T Consensus 221 Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s 260 (398)
T 3ngq_A 221 FVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDS 260 (398)
T ss_dssp HHHHHHHHHCC-------------CCCEEEEEECSCCTTS
T ss_pred HHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCCCC
Confidence 55544431 24699999999998864
No 27
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.63 E-value=3.7e-15 Score=127.81 Aligned_cols=129 Identities=10% Similarity=0.012 Sum_probs=65.7
Q ss_pred hhhhhhc--CCCeEEEehhhhhH---h----hhcCCCCCCCceEEEeccC---CCceeEEEEEeccC-CcceeeeccCcC
Q 023207 10 PKNHQEL--KDDTKASREEKLIL---M----RALSSPPFKNYQIWWSLAD---SKYAGTALLVKKCF-QPKKVSFSLEKT 76 (285)
Q Consensus 10 ~~~l~~~--~~DIv~LQE~~~~~---~----~~l~~~~~~gy~~~~~~~~---~~~~GvaIlsr~~~-~~~~~~~~l~~~ 76 (285)
.+.|.+. +||||||||+.... . +.+......+|.++..... ....++||++|.+. .+.. ...++..
T Consensus 22 ~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~-~~~~~~~ 100 (260)
T 2a40_B 22 ASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLD-TYQYDDG 100 (260)
T ss_dssp HHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEE-EEECCTT
T ss_pred HHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEcccCCCCCCcEEEEEEEcCceeEecC-ceeccCC
Confidence 3445543 89999999997521 1 2222211245876655321 12346899999862 2211 1223210
Q ss_pred CC-----CCCCCCcEEEEEe-----CCEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHH-HhcCCCCEEEEcccCccC
Q 023207 77 AL-----KYEPDGRVILAEF-----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCGDLNVSH 145 (285)
Q Consensus 77 ~~-----~~d~~gR~l~~~~-----~~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l-~~~~~~p~Il~GDFN~~~ 145 (285)
.. ......++..... ..+.|+++|+++... .. +.+.+..+.+.+ ......|+|||||||+.+
T Consensus 101 ~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~----~~---q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~ 173 (260)
T 2a40_B 101 CESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDA----VA---EINSLYDVYLDVQQKWHLNDVMLMGDFNADC 173 (260)
T ss_dssp STTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGGH----HH---HHHHHHHHHHHHHHHHCCCCEEEEEECCCST
T ss_pred CcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCCCCCc----HH---HHHHHHHHHHHHHHhCCCCCEEEEecCCCCC
Confidence 00 0112222333332 269999999986432 11 112222222222 222468999999999966
Q ss_pred C
Q 023207 146 E 146 (285)
Q Consensus 146 ~ 146 (285)
.
T Consensus 174 ~ 174 (260)
T 2a40_B 174 S 174 (260)
T ss_dssp T
T ss_pred c
Confidence 4
No 28
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.48 E-value=3.7e-13 Score=119.79 Aligned_cols=131 Identities=12% Similarity=0.083 Sum_probs=72.2
Q ss_pred CCChhhhhhh---cCCCe--EEEehhhh---------------hHhhhcCCCC------CCCceEEEeccCCCceeEEEE
Q 023207 6 SKDAPKNHQE---LKDDT--KASREEKL---------------ILMRALSSPP------FKNYQIWWSLADSKYAGTALL 59 (285)
Q Consensus 6 ~~~~~~~l~~---~~~DI--v~LQE~~~---------------~~~~~l~~~~------~~gy~~~~~~~~~~~~GvaIl 59 (285)
..++..||.. ..||| |||||+-. .|...+...+ ..+|..+.+ .+-++-+++|+
T Consensus 40 ~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w~~~i~~~L~~~~~~~~~Y~~v~s-~~l~g~~L~Vf 118 (347)
T 1i9z_A 40 TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRS-GQLVGTALMIF 118 (347)
T ss_dssp CSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCSSCCEEEEEE-EEETTEEEEEE
T ss_pred chhHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHHHHHHHHHHhhcccCCCceeEEEE-eeccceEEEEE
Confidence 3578899984 78999 89999831 1111111111 134554433 22335578899
Q ss_pred EeccCCcc--eee-----eccCcCCCCCCCCCcEEEE--EeC--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHH
Q 023207 60 VKKCFQPK--KVS-----FSLEKTALKYEPDGRVILA--EFE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 128 (285)
Q Consensus 60 sr~~~~~~--~~~-----~~l~~~~~~~d~~gR~l~~--~~~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~ 128 (285)
+|.++.+. .+. .++.+ ...-.| .+.+ .+. .+.++|+|+.++... ...|...+..|.+.+.
T Consensus 119 vr~~~~~~i~~v~~~~v~tG~~g---~~gnKG-av~vr~~~~~~~l~fvn~HLaa~~~~-----~~~R~~d~~~I~~~l~ 189 (347)
T 1i9z_A 119 CKESCLPSIKNVEGTVKKTGLGG---VSGNKG-AVAIRFDYEDTGLCFITSHLAAGYTN-----YDERDHDYRTIASGLR 189 (347)
T ss_dssp EEGGGGGGEEEEEEEEEECCCC-------CCE-EEEEEEEETTEEEEEEEEECCCCSSC-----HHHHHHHHHHHHHHCC
T ss_pred EehHhhhhccceeeeeEeccCCC---ccCCCc-eEEEEEEECCeEEEEEEecCCCCCcc-----HHHHHHHHHHHHHhhc
Confidence 99986432 111 23322 011122 3334 443 699999999987642 1235555555554432
Q ss_pred h------cCCCCEEEEcccCccCC
Q 023207 129 Q------CSGKPLIWCGDLNVSHE 146 (285)
Q Consensus 129 ~------~~~~p~Il~GDFN~~~~ 146 (285)
- ....++|+|||||...+
T Consensus 190 f~~~~~i~~~d~v~~~GDlNyRi~ 213 (347)
T 1i9z_A 190 FRRGRSIFNHDYVVWFGDFNYRIS 213 (347)
T ss_dssp CGGGCCTTSSSEEEEEEECCCCBS
T ss_pred cCcccccccCccEEEecccccccC
Confidence 0 13478999999996543
No 29
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.44 E-value=8.2e-14 Score=121.03 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=66.3
Q ss_pred CCChhhhhh---hcCCCe--EEEehhhhhH---------hhhcCCCCCC--CceEEEeccCCCcee--EEEEEeccCCc-
Q 023207 6 SKDAPKNHQ---ELKDDT--KASREEKLIL---------MRALSSPPFK--NYQIWWSLADSKYAG--TALLVKKCFQP- 66 (285)
Q Consensus 6 ~~~~~~~l~---~~~~DI--v~LQE~~~~~---------~~~l~~~~~~--gy~~~~~~~~~~~~G--vaIlsr~~~~~- 66 (285)
.+++.+|+. ..+||| |||||+.... .+.+.. .+. +|..+.+. ..+..| ++|++|+++.+
T Consensus 22 ~~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~-~L~~~~Y~~v~~~-~~~~~G~~l~vf~k~~~~~~ 99 (282)
T 2imq_X 22 PTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQS-LLTSKGYTKLKNT-ITETMGLTVYCLEKHLDQNT 99 (282)
T ss_dssp CSCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHH-HHHHTTEEEEEEE-ECSSEEEEEEEEGGGCCTTT
T ss_pred chhHHHHhcccccCCCCEEEEEeeeeccccccchhhHHHHHHHHH-hcCCCceEEEEec-cCceeEEEEEEEEccccCcc
Confidence 467888887 689996 5999997421 222221 122 45444331 133344 45555775421
Q ss_pred ce-e-eeccCcCCCCCCCCCcEEEEE--eC--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh-cCCCCEEEEc
Q 023207 67 KK-V-SFSLEKTALKYEPDGRVILAE--FE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCG 139 (285)
Q Consensus 67 ~~-~-~~~l~~~~~~~d~~gR~l~~~--~~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~-~~~~p~Il~G 139 (285)
++ . ..++.+ .....| .+.+. +. .+.++|+|+.+.....+. |.+.+..|.+.+.. ....++|+||
T Consensus 100 i~~~~~~~~~g---~~g~kG-av~~r~~~~~~~~~fvn~HL~~~~~~~~~-----R~~~~~~I~~~~~~~~~~~~vi~~G 170 (282)
T 2imq_X 100 LKNETIIVTVD---DQKKSG-GIVTSFTIYNKRFSFTTSRMSDEDVTSTN-----TKYAYDTRLDYSKKDDPSDFLFWIG 170 (282)
T ss_dssp CCCEEEEEECS---TTSCSE-EEEEEEEETTEEEEEEEEECCTTCCCTTS-----SSSSCCGGGCTTSSSSCCSEEEEEE
T ss_pred ceeeeeccccc---cccCCc-eEEEEEEECCEEEEEEEECCCCCCchHHH-----HHHHHHHHHHhhhccCccceEEEec
Confidence 11 1 112221 111122 33333 33 699999999987432111 11122233333322 2456899999
Q ss_pred ccCccCC
Q 023207 140 DLNVSHE 146 (285)
Q Consensus 140 DFN~~~~ 146 (285)
|||...+
T Consensus 171 DfN~r~~ 177 (282)
T 2imq_X 171 DLNVRVE 177 (282)
T ss_dssp ECSCCBC
T ss_pred ccccccC
Confidence 9998654
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.14 E-value=3.9e-10 Score=100.56 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=74.0
Q ss_pred CCChhhhhh----hcCCCe--EEEehhhhh---HhhhcCCCCCCCceEEEeccCCCceeEEEEEeccCCcc----e---e
Q 023207 6 SKDAPKNHQ----ELKDDT--KASREEKLI---LMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK----K---V 69 (285)
Q Consensus 6 ~~~~~~~l~----~~~~DI--v~LQE~~~~---~~~~l~~~~~~gy~~~~~~~~~~~~GvaIlsr~~~~~~----~---~ 69 (285)
+.++.+|+. ...||| |+|||+... +...+...+...|..+.+ ..-+..+++||+|.++.+. . +
T Consensus 42 ~~~L~~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~s-~~l~g~~l~Vfvr~~~~~~i~~v~~~~v 120 (357)
T 2xsw_A 42 PPSLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSS-AAHGVLYMSLFIRRDLIWFCSEVECSTV 120 (357)
T ss_dssp CSCCHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEE-EEETTEEEEEEEEGGGGGGBBCCEEEEE
T ss_pred cccHHHHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhCCcccchhh-hhhhhEEEEEEEchHHhhcCceeEeccc
Confidence 456777774 357996 889999742 333333222345654433 2335567999999875321 1 1
Q ss_pred eeccCcCCCCCCCCCcEEE--EEeC--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh----------------
Q 023207 70 SFSLEKTALKYEPDGRVIL--AEFE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ---------------- 129 (285)
Q Consensus 70 ~~~l~~~~~~~d~~gR~l~--~~~~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~---------------- 129 (285)
..++.+ ...-.| .+. +.+. .+.++|+|+.++... ...|.+-+..|.+.+.-
T Consensus 121 ~tG~~g---~~gNKG-av~vr~~~~~t~~~Fvn~HLaa~~~~-----~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~ 191 (357)
T 2xsw_A 121 TTRIVS---QIKTKG-ALGISFTFFGTSFLFITSHFTSGDGK-----VAERLLDYTRTVQALVLPRNVPDTNPYRSSAAD 191 (357)
T ss_dssp EEEEEE---TTEEEE-EEEEEEEETTEEEEEEEEECCCSTTC-----HHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTB
T ss_pred cccccc---cccccc-EEEEEEEECCeEEEEEEEccCCCCch-----HHHHHHHHHHHHHHhcccccccccccccccccc
Confidence 122221 011122 333 3443 689999999988642 22355555555544420
Q ss_pred --cCCCCEEEEcccCccCC
Q 023207 130 --CSGKPLIWCGDLNVSHE 146 (285)
Q Consensus 130 --~~~~p~Il~GDFN~~~~ 146 (285)
.....+|++||||-..+
T Consensus 192 ~~~~~d~vfw~GDlNyRi~ 210 (357)
T 2xsw_A 192 VTTRFDEVFWFGDFNFRLS 210 (357)
T ss_dssp GGGSSSEEEEEEECCCCBS
T ss_pred cccccceEEEecccCcccc
Confidence 02368999999998665
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.84 E-value=6.1e-08 Score=84.40 Aligned_cols=132 Identities=18% Similarity=0.139 Sum_probs=71.3
Q ss_pred CCChhhhhhh--cCCC--eEEEehhhhh--------------HhhhcCCCCC--CCceEEEeccCCCceeEEEEEeccCC
Q 023207 6 SKDAPKNHQE--LKDD--TKASREEKLI--------------LMRALSSPPF--KNYQIWWSLADSKYAGTALLVKKCFQ 65 (285)
Q Consensus 6 ~~~~~~~l~~--~~~D--Iv~LQE~~~~--------------~~~~l~~~~~--~gy~~~~~~~~~~~~GvaIlsr~~~~ 65 (285)
.+++..||.. ..|| ||+|||+... |...+...+. ..|..+.+. +-.+--+.|++|..+.
T Consensus 23 ~~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~~~~Y~~v~s~-~lvGl~l~Vfvr~~~~ 101 (313)
T 3mtc_A 23 KECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLI-RLVGIMLLLYVKQEHA 101 (313)
T ss_dssp CSCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSCEEEEEEE-EETTEEEEEEEEGGGG
T ss_pred chhHHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCCCCCEEEEEEe-chhhhhhhhhhhhhhh
Confidence 4678999986 7899 7999998531 1112211111 246655432 1122235677888653
Q ss_pred cc-------eeeeccCcCCCCCCCCCc-EEEEEeC--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh------
Q 023207 66 PK-------KVSFSLEKTALKYEPDGR-VILAEFE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ------ 129 (285)
Q Consensus 66 ~~-------~~~~~l~~~~~~~d~~gR-~l~~~~~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~------ 129 (285)
+. .+..++.+ ...-.|- .+.+.+. .+.++|+|++++... .+.|.+-+..|.+.+.-
T Consensus 102 ~~i~~v~~~~v~tG~~g---~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~-----~~~Rn~d~~~I~~~l~f~~~~~~ 173 (313)
T 3mtc_A 102 AYISEVEAETVGTGIMG---RMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE-----YERRNQDYKDICSRMQFCQPDPS 173 (313)
T ss_dssp GGEEEEEEEEEECSGGG---TSTTSEEEEEEEEETTEEEEEEEEECCCSGGG-----HHHHHHHHHHHHHHCCBCCSCSS
T ss_pred hhcceeEeeeecccccc---cccCCceEEEEEEECCcEEEEEeeccCCCchH-----HHHHHHHHHHHHHhcccCCCCCc
Confidence 21 12233322 1112332 2234444 689999999887642 23455445555443320
Q ss_pred ------cCCCCEEEEcccCccCC
Q 023207 130 ------CSGKPLIWCGDLNVSHE 146 (285)
Q Consensus 130 ------~~~~p~Il~GDFN~~~~ 146 (285)
.....+|++||||-..+
T Consensus 174 ~~~~~i~~~d~vfw~GDLNyRi~ 196 (313)
T 3mtc_A 174 LPPLTISNHDVILWLGDLNYRIE 196 (313)
T ss_dssp SCCBCTTSSSEEEEEEECCCCBC
T ss_pred cCCccccCCceEEEecccccccc
Confidence 01245999999998664
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.56 E-value=1.4e-06 Score=75.92 Aligned_cols=132 Identities=18% Similarity=0.179 Sum_probs=69.6
Q ss_pred CCChhhhhhh-------------cCCCeE--EEehhhh---hHhhhcCCCC----CCCceEEEeccCCCceeEEEEEecc
Q 023207 6 SKDAPKNHQE-------------LKDDTK--ASREEKL---ILMRALSSPP----FKNYQIWWSLADSKYAGTALLVKKC 63 (285)
Q Consensus 6 ~~~~~~~l~~-------------~~~DIv--~LQE~~~---~~~~~l~~~~----~~gy~~~~~~~~~~~~GvaIlsr~~ 63 (285)
++++..||.- ..|||+ +|||... .|...+...+ ...|..+.+. +-..-.++|++|..
T Consensus 23 ~~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s~-~L~gi~l~Vfvk~~ 101 (316)
T 4a9c_A 23 PKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQ-SLWNIKVAVLVKPE 101 (316)
T ss_dssp CSCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEEE-EETTEEEEEEECGG
T ss_pred CcchhHhhcccccccCcccccccCCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEee-eehheeeeeEEeHH
Confidence 4577778752 347987 9999853 2223322111 1357655442 22345688999987
Q ss_pred CCcc-------eeeeccCcCCCCCCCCCc-EEEEEeC--CEEEEEEEeeCCCCCcchhhHHHHHHHHHHHHHHHHh----
Q 023207 64 FQPK-------KVSFSLEKTALKYEPDGR-VILAEFE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ---- 129 (285)
Q Consensus 64 ~~~~-------~~~~~l~~~~~~~d~~gR-~l~~~~~--~~~v~~vy~p~~~~~~~~~~~~~r~~~~~~l~~~l~~---- 129 (285)
+.+. .+..++.+ ...-.|- .+.+.+. .+.++|+|+.++... .++|.+-+..|.+.+.-
T Consensus 102 ~~~~I~~v~~~~v~tG~~g---~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~-----~~~Rn~d~~~I~~~l~f~~~~ 173 (316)
T 4a9c_A 102 HENRISHVSTSSVKTGIAN---TLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK-----TARRNQNYLDILRLLSLGDRQ 173 (316)
T ss_dssp GGGGEEEEEEEEEEEC---------CEEEEEEEEEETTEEEEEEEEECCCSTTC-----HHHHHHHHHHHHHHCCC----
T ss_pred HhhhCcccccceeeeeeeE---ecCCCceEEEEEEECCcEEEEEEeccccCchH-----HHHHHHHHHHHHHhCCCCCCC
Confidence 5331 11233322 1111232 2234444 699999999987642 22354444455443210
Q ss_pred --c-----CCCCEEEEcccCccCC
Q 023207 130 --C-----SGKPLIWCGDLNVSHE 146 (285)
Q Consensus 130 --~-----~~~p~Il~GDFN~~~~ 146 (285)
. .-..+|++||||-..+
T Consensus 174 ~~~~d~~~~~d~vfw~GDLNyRi~ 197 (316)
T 4a9c_A 174 LNAFDISLRFTHLFWFGDLNYRLD 197 (316)
T ss_dssp ---CCTTTTSSEEEEEEECCCCBS
T ss_pred cCccccCCcCCeEEEcCCccCCcC
Confidence 0 1135899999999664
Done!