Query 023208
Match_columns 285
No_of_seqs 129 out of 1243
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:14:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 100.0 1.1E-39 2.3E-44 287.0 15.5 221 2-268 7-235 (237)
2 PF00335 Tetraspannin: Tetrasp 99.9 2E-27 4.4E-32 203.5 -3.8 214 3-261 1-221 (221)
3 cd03163 TM4SF8_like_LEL Tetras 99.4 7.3E-14 1.6E-18 107.4 1.4 94 94-233 2-104 (105)
4 cd03161 TM4SF2_6_like_LEL Tetr 99.4 1.6E-13 3.5E-18 105.1 2.0 75 127-233 27-104 (104)
5 cd03154 TM4SF3_like_LEL Tetras 99.4 1.1E-13 2.5E-18 105.3 1.1 97 90-233 1-100 (100)
6 cd03160 CD37_CD82_like_LEL Tet 99.4 1.4E-13 3.1E-18 107.8 1.2 102 94-233 2-116 (117)
7 cd03164 CD53_like_LEL Tetraspa 99.4 1.5E-13 3.3E-18 101.8 0.8 59 128-237 28-86 (86)
8 cd03159 TM4SF9_like_LEL Tetras 99.3 2.8E-13 6.1E-18 106.9 1.0 76 127-233 27-121 (121)
9 cd03166 CD63_LEL Tetraspanin, 99.3 3.1E-13 6.7E-18 102.7 0.7 69 127-233 27-99 (99)
10 cd03155 CD151_like_LEL Tetrasp 99.3 6.4E-13 1.4E-17 102.9 1.4 72 127-233 30-110 (110)
11 cd03158 penumbra_like_LEL Tetr 99.3 7.9E-13 1.7E-17 104.0 1.1 40 127-178 27-76 (119)
12 cd03165 NET-5_like_LEL Tetrasp 99.3 7.5E-13 1.6E-17 100.3 0.5 68 127-233 29-98 (98)
13 cd03167 oculospanin_like_LEL T 99.3 1.2E-12 2.7E-17 103.2 1.5 40 127-178 27-76 (120)
14 cd03156 uroplakin_I_like_LEL T 99.3 6.7E-13 1.5E-17 103.1 -0.0 40 127-178 30-78 (114)
15 cd03162 peripherin_like_LEL Te 99.2 5.6E-12 1.2E-16 101.8 1.7 98 107-232 16-142 (143)
16 cd03157 TM4SF12_like_LEL Tetra 99.2 2E-11 4.4E-16 93.6 4.5 69 128-231 31-101 (103)
17 cd03127 tetraspanin_LEL Tetras 99.1 1.6E-11 3.4E-16 91.0 0.7 63 127-232 27-89 (90)
18 cd03152 CD9_LEL Tetraspanin, e 99.0 9E-11 2E-15 86.6 -0.1 55 128-233 30-84 (84)
19 cd03151 CD81_like_LEL Tetraspa 98.5 2.6E-08 5.6E-13 73.5 -0.4 33 128-175 30-62 (84)
20 PF05640 NKAIN: Na,K-Atpase In 90.7 6.7 0.00015 33.4 11.7 48 43-90 33-80 (200)
21 PRK12585 putative monovalent c 86.8 9.2 0.0002 32.4 9.8 53 8-62 5-59 (197)
22 PF11297 DUF3098: Protein of u 86.7 0.8 1.7E-05 32.2 3.0 47 11-57 6-63 (69)
23 PF10724 DUF2516: Protein of u 86.2 6.4 0.00014 29.8 7.9 30 6-35 3-32 (100)
24 PF12273 RCR: Chitin synthesis 85.0 1.2 2.6E-05 35.3 3.7 36 241-276 5-41 (130)
25 PF04156 IncA: IncA protein; 83.7 3 6.5E-05 35.1 5.8 22 10-31 6-27 (191)
26 PF03729 DUF308: Short repeat 83.4 11 0.00023 25.7 7.7 48 17-69 1-48 (72)
27 PF04103 CD20: CD20-like famil 82.7 0.39 8.5E-06 38.4 0.0 72 14-88 5-76 (150)
28 PF05915 DUF872: Eukaryotic pr 81.5 3.6 7.7E-05 32.0 5.0 49 9-59 44-92 (115)
29 KOG4433 Tweety transmembrane/c 81.5 3.8 8.3E-05 39.3 6.1 43 43-85 209-252 (526)
30 COG4993 Gcd Glucose dehydrogen 79.2 5.9 0.00013 39.5 6.6 65 8-84 3-67 (773)
31 cd07912 Tweety_N N-terminal do 78.4 8.3 0.00018 36.9 7.3 40 42-81 207-247 (418)
32 PF07086 DUF1352: Protein of u 76.6 31 0.00066 29.2 9.4 81 8-92 40-120 (186)
33 PF15125 TMEM238: TMEM238 prot 76.0 7.3 0.00016 26.8 4.5 47 8-63 6-52 (65)
34 COG3247 HdeD Uncharacterized c 74.1 26 0.00056 29.6 8.4 51 14-69 21-71 (185)
35 PF09323 DUF1980: Domain of un 73.4 13 0.00028 31.2 6.5 40 46-85 35-87 (182)
36 PF06706 CTV_P6: Citrus triste 73.1 2.4 5.3E-05 26.7 1.5 14 262-275 37-50 (51)
37 PF06341 DUF1056: Protein of u 67.9 22 0.00048 24.4 5.4 48 2-59 5-52 (63)
38 COG2245 Predicted membrane pro 63.5 87 0.0019 26.1 10.0 74 12-85 27-104 (182)
39 PF11384 DUF3188: Protein of u 58.6 21 0.00045 23.3 3.8 21 40-60 22-42 (49)
40 PRK07946 putative monovalent c 57.6 31 0.00067 28.5 5.6 47 11-60 3-50 (163)
41 PF11127 DUF2892: Protein of u 57.1 31 0.00068 23.5 4.9 43 15-65 13-55 (66)
42 PRK10209 acid-resistance membr 56.5 84 0.0018 26.4 8.4 49 14-67 23-71 (190)
43 PF04906 Tweety: Tweety; Inte 56.2 8.2 0.00018 36.8 2.3 33 51-83 194-226 (406)
44 KOG4054 Uncharacterized conser 56.1 1.2E+02 0.0026 25.3 8.6 79 8-90 40-118 (183)
45 PF14967 FAM70: FAM70 protein 54.6 16 0.00036 33.0 3.7 78 12-95 31-114 (327)
46 PF06770 Arif-1: Actin-rearran 53.2 81 0.0017 26.9 7.5 56 12-67 2-65 (196)
47 PF15050 SCIMP: SCIMP protein 52.0 24 0.00053 27.5 3.8 29 227-256 2-30 (133)
48 PF06195 DUF996: Protein of un 50.0 1.3E+02 0.0029 24.0 8.9 20 15-34 2-21 (139)
49 PF11381 DUF3185: Protein of u 44.2 18 0.00039 24.6 1.8 15 46-60 44-58 (59)
50 TIGR00941 2a6301s03 Multicompo 43.3 75 0.0016 24.2 5.3 46 12-59 2-47 (104)
51 PF15345 TMEM51: Transmembrane 43.0 28 0.00061 30.4 3.3 16 46-61 64-79 (233)
52 PRK10209 acid-resistance membr 43.0 1.4E+02 0.003 25.1 7.6 24 46-69 108-131 (190)
53 PF09925 DUF2157: Predicted me 42.6 1.7E+02 0.0037 23.2 10.2 24 10-33 31-54 (145)
54 PRK12586 putative monovalent c 42.4 1.8E+02 0.004 23.5 10.0 32 3-34 3-34 (145)
55 COG1971 Predicted membrane pro 41.1 1.8E+02 0.004 24.6 7.8 77 14-91 69-183 (190)
56 PF15471 TMEM171: Transmembran 41.0 28 0.00061 31.1 3.0 24 8-31 111-134 (319)
57 COG0713 NuoK NADH:ubiquinone o 38.3 1.7E+02 0.0038 22.1 7.2 77 15-98 7-86 (100)
58 PF04156 IncA: IncA protein; 37.6 1.2E+02 0.0026 25.2 6.4 16 46-61 11-26 (191)
59 PF13903 Claudin_2: PMP-22/EMP 37.5 1.4E+02 0.003 23.7 6.7 29 46-74 74-103 (172)
60 PRK12659 putative monovalent c 37.0 97 0.0021 24.1 5.2 46 12-59 2-47 (117)
61 PF15471 TMEM171: Transmembran 36.9 37 0.0008 30.4 3.1 50 6-55 22-76 (319)
62 PRK08600 putative monovalent c 36.7 97 0.0021 24.0 5.1 46 12-59 2-47 (113)
63 PHA03283 envelope glycoprotein 35.9 28 0.0006 34.0 2.4 48 227-275 394-444 (542)
64 PRK12660 putative monovalent c 35.4 2.1E+02 0.0045 22.1 7.6 49 12-63 2-51 (114)
65 PRK08389 putative monovalent c 33.9 2.2E+02 0.0047 21.9 7.8 48 14-63 4-52 (114)
66 PRK05715 NADH:ubiquinone oxido 33.5 2E+02 0.0043 21.3 8.4 73 15-94 7-80 (100)
67 KOG3653 Transforming growth fa 32.7 75 0.0016 31.0 4.7 11 174-184 118-128 (534)
68 PRK09094 putative monovalent c 32.4 1.3E+02 0.0027 23.4 5.1 20 14-33 4-23 (114)
69 TIGR01478 STEVOR variant surfa 32.3 57 0.0012 29.5 3.6 28 239-266 264-291 (295)
70 PRK12658 putative monovalent c 31.4 1E+02 0.0023 24.3 4.6 45 12-58 2-46 (125)
71 PRK10263 DNA translocase FtsK; 31.3 4.5E+02 0.0099 29.2 10.6 9 23-31 90-98 (1355)
72 KOG4753 Predicted membrane pro 31.1 26 0.00055 27.3 1.1 45 13-58 55-99 (124)
73 PF12805 FUSC-like: FUSC-like 29.7 2.3E+02 0.0049 25.3 7.2 18 47-64 28-45 (284)
74 PF08566 Pam17: Mitochondrial 28.8 1.5E+02 0.0033 24.7 5.3 19 44-62 75-93 (173)
75 PF05454 DAG1: Dystroglycan (D 27.9 20 0.00043 32.6 0.0 32 232-264 145-176 (290)
76 PF13706 PepSY_TM_3: PepSY-ass 27.9 93 0.002 18.7 3.0 22 46-67 12-33 (37)
77 PF13127 DUF3955: Protein of u 27.7 2.1E+02 0.0045 19.6 6.1 18 10-27 5-22 (63)
78 PTZ00370 STEVOR; Provisional 27.4 70 0.0015 29.0 3.3 29 238-266 259-287 (296)
79 KOG4556 Predicted membrane pro 27.4 2.5E+02 0.0054 23.6 6.3 46 43-88 30-75 (205)
80 KOG4812 Golgi-associated prote 27.3 56 0.0012 28.8 2.6 28 44-71 227-254 (262)
81 PF07062 Clc-like: Clc-like; 26.9 1.4E+02 0.0031 25.8 5.1 20 8-27 3-22 (211)
82 PRK11246 hypothetical protein; 26.7 86 0.0019 27.2 3.6 27 248-274 174-200 (218)
83 PF15048 OSTbeta: Organic solu 25.8 93 0.002 24.5 3.4 18 7-24 38-55 (125)
84 PF04854 DUF624: Protein of un 25.2 69 0.0015 22.3 2.5 21 8-28 1-24 (77)
85 PF05393 Hum_adeno_E3A: Human 25.1 1.6E+02 0.0034 21.7 4.2 19 245-263 44-62 (94)
86 PF09680 Tiny_TM_bacill: Prote 24.8 70 0.0015 17.5 1.8 13 78-90 8-20 (24)
87 TIGR01167 LPXTG_anchor LPXTG-m 24.7 87 0.0019 18.0 2.5 18 14-31 12-29 (34)
88 PRK01741 cell division protein 24.5 42 0.0009 31.0 1.4 10 59-68 21-30 (332)
89 CHL00015 ndhE NADH dehydrogena 24.4 3E+02 0.0065 20.5 7.7 74 16-94 7-81 (101)
90 PF08507 COPI_assoc: COPI asso 24.4 2.3E+02 0.005 22.3 5.6 23 11-33 6-28 (136)
91 PF01102 Glycophorin_A: Glycop 24.0 1E+02 0.0022 24.2 3.4 27 237-264 69-95 (122)
92 PF06724 DUF1206: Domain of Un 23.9 75 0.0016 22.1 2.4 21 12-32 47-67 (73)
93 PF06716 DUF1201: Protein of u 23.8 2.1E+02 0.0045 18.5 4.0 42 236-278 10-51 (54)
94 PRK12661 putative monovalent c 23.4 1.7E+02 0.0036 23.6 4.5 11 58-68 15-25 (140)
95 PF11239 DUF3040: Protein of u 22.8 2.7E+02 0.0058 19.8 5.2 15 14-28 47-61 (82)
96 PF03142 Chitin_synth_2: Chiti 22.7 4.9E+02 0.011 25.8 8.5 88 9-100 399-487 (527)
97 PF10067 DUF2306: Predicted me 22.6 3.3E+02 0.0072 20.3 8.7 44 44-87 43-91 (103)
98 PF13908 Shisa: Wnt and FGF in 22.3 63 0.0014 26.8 2.0 9 142-150 26-34 (179)
99 COG3374 Predicted membrane pro 22.3 2.1E+02 0.0045 24.4 5.0 50 13-62 10-63 (197)
100 PF15099 PIRT: Phosphoinositid 22.3 64 0.0014 25.5 1.9 16 46-61 87-102 (129)
101 PF12877 DUF3827: Domain of un 22.2 39 0.00085 33.9 0.9 35 231-265 267-301 (684)
102 PF12650 DUF3784: Domain of un 22.1 3.2E+02 0.007 19.9 7.4 13 46-58 50-62 (97)
103 KOG3950 Gamma/delta sarcoglyca 21.7 1.2E+02 0.0025 26.9 3.5 30 69-98 34-63 (292)
104 COG0838 NuoA NADH:ubiquinone o 21.3 3.6E+02 0.0079 21.2 5.9 9 268-276 50-58 (123)
105 PF11023 DUF2614: Protein of u 21.1 4E+02 0.0086 20.6 5.9 29 46-79 18-46 (114)
106 PF06123 CreD: Inner membrane 20.7 7.7E+02 0.017 23.8 9.4 15 46-60 356-370 (430)
107 PHA00442 host recBCD nuclease 20.7 23 0.0005 23.5 -0.7 24 128-151 11-43 (59)
108 PRK10692 hypothetical protein; 20.6 2E+02 0.0044 21.1 4.0 55 46-100 13-69 (92)
109 PF01184 Grp1_Fun34_YaaH: GPR1 20.4 5.5E+02 0.012 21.9 7.8 27 10-36 51-77 (211)
110 TIGR01732 tiny_TM_bacill conse 20.4 1.1E+02 0.0024 17.1 2.0 13 78-90 10-22 (26)
111 PF07214 DUF1418: Protein of u 20.2 2.2E+02 0.0047 21.4 4.2 20 14-33 13-32 (96)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=286.99 Aligned_cols=221 Identities=18% Similarity=0.291 Sum_probs=176.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcccCcchhhh---hhhhh--HHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 023208 2 RNSNHLIGLLNFFTFLLSIPIIGGGIWLSSRANNTDCLK---FLQWP--LIVIGVSIMVVSLAGFAGACYRNTHLMRFYL 76 (285)
Q Consensus 2 ~~~K~~L~~~N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~---~~~~~--li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~ 76 (285)
+++||+++++|+++|++|++++++|+|++.++....... ++..+ ++++|++++++|++||+||.|||+|+|.+|+
T Consensus 7 ~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~ 86 (237)
T KOG3882|consen 7 SCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYF 86 (237)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHH
Confidence 689999999999999999999999999999987542110 22233 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhheeccCCCCccc-c--ccccccccccccccccccccCchhhHHHhhhccccCCCcCCCcccCC
Q 023208 77 FVMFFIIAALIGFIIFAYAVTDKGSGRPV-M--DRAYSEYHLEDYSGWLKDRVTDDSYWGKISSCIRDSKVCPKMRRVIN 153 (285)
Q Consensus 77 ~ll~vl~i~ei~~~i~~~~~~~~~~~~~~-~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~ 153 (285)
+++++++++|++++++++++++++++... . ++.++.|..++ +.+++||.+|+ +++|||++|
T Consensus 87 ~~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~---------~~~~~~d~~Q~----~~~CCG~~~--- 150 (237)
T KOG3882|consen 87 ILLLLLFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDP---------DLGEAWDKLQR----ELKCCGVNG--- 150 (237)
T ss_pred HHHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCc---------cHHHHHHHHHH----hccCCcCCC---
Confidence 99999999999999999999998866553 1 33333343322 22378999999 999999999
Q ss_pred CCCCchhhhhhcCCCCCCCCCCCCCCCCCcccccCcccCCCCCCCCCCCccccccCccccccccCcchHHHHHHHHHHhh
Q 023208 154 GAPETADMFSLRKLNPVQSGCCKPPADCGFVYENETLWNPGGGLVGSNPDCTRWSNDQEQLCYQCDSCKAGVLASLKKSW 233 (285)
Q Consensus 154 ~~~~~~~dw~~~~~~~vP~SCC~~~~~C~~~~~~~t~~~~~~~~~~~~~~c~~~~~~~~~gC~~~~GC~~~l~~~l~~~~ 233 (285)
|. ||...+...||+|||++.... . .......+.|. +||.+++.+++++++
T Consensus 151 --~~---~~~~~~~~~vP~SCC~~~~~~------~-------------~~~~~~~~~~~------~GC~~~~~~~~~~~~ 200 (237)
T KOG3882|consen 151 --YS---DYFNCSSNNVPPSCCKRTRRQ------K-------------FPQDVPDNIYT------EGCLEKLSSWLESNL 200 (237)
T ss_pred --ch---HHhcCCCCCCCcccCCCcccc------c-------------ccccchhhhhc------cccHHHHHHHHHHhh
Confidence 75 888764322999999872100 0 00001123455 577799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCC
Q 023208 234 RKVSVINIVVLIILVIFYVIGCAAFRNNRRIDNDE 268 (285)
Q Consensus 234 ~~v~~~~~~i~~iqii~~~~a~~l~~~~~~~~~~~ 268 (285)
..+++++++++++|++++++|+++.+++|+.++..
T Consensus 201 ~~i~~~~~~i~~~~~~~~~~a~~l~~~i~~~~~~~ 235 (237)
T KOG3882|consen 201 LIIGGVGLGIAVLELLGMILACCLANAIRNQRDRR 235 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999998876543
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.92 E-value=2e-27 Score=203.50 Aligned_cols=214 Identities=20% Similarity=0.386 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhcccCcchh--hhh---hhhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 023208 3 NSNHLIGLLNFFTFLLSIPIIGGGIWLSSRANNTDC--LKF---LQWPLIVIGVSIMVVSLAGFAGACYRNTHLMRFYLF 77 (285)
Q Consensus 3 ~~K~~L~~~N~lf~i~Gi~ll~~Gi~~~~~~~~~~~--~~~---~~~~li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ 77 (285)
++|++++++|++++++|++++++|+|++......+. ... ....++++|+++++++++|++|+.++||+++.+|.+
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~ 80 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYII 80 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Confidence 589999999999999999999999999422221111 111 112277799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhheeccCCCCccccccccccccccccccccccccCchhhHHHhhhccccCCCcCCCcccCCCCCC
Q 023208 78 VMFFIIAALIGFIIFAYAVTDKGSGRPVMDRAYSEYHLEDYSGWLKDRVTDDSYWGKISSCIRDSKVCPKMRRVINGAPE 157 (285)
Q Consensus 78 ll~vl~i~ei~~~i~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~ 157 (285)
+++++++++++++++++.++++...... +.+..+....+ .+++..++.||.+|+ +++|||.++ ++
T Consensus 81 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~iq~----~~~CCG~~~-----~~ 145 (221)
T PF00335_consen 81 LLILLFVLELVVGIVAFSYRDQLNSSLK--DGLSLRCMKSY----NSNESFSEAWDNIQE----KFECCGVNS-----PD 145 (221)
T ss_dssp -------------------HHHHHHHHH--HHHHHHHHHSS----TT-CHHHHHHHHHHH----HHT--SSTT-----CH
T ss_pred chhhHHHHHHHHHHhhhhcccccccccc--ccccchhhhcc----ccccchhhheecccc----cccccCCCC-----Cc
Confidence 9999999999999999999887643321 11100000011 112256889999999 999999999 76
Q ss_pred chhhhhhcCC--CCCCCCCCCCCCCCCcccccCcccCCCCCCCCCCCccccccCccccccccCcchHHHHHHHHHHhhHH
Q 023208 158 TADMFSLRKL--NPVQSGCCKPPADCGFVYENETLWNPGGGLVGSNPDCTRWSNDQEQLCYQCDSCKAGVLASLKKSWRK 235 (285)
Q Consensus 158 ~~~dw~~~~~--~~vP~SCC~~~~~C~~~~~~~t~~~~~~~~~~~~~~c~~~~~~~~~gC~~~~GC~~~l~~~l~~~~~~ 235 (285)
||..... .+.|+.|..... ..+++..+..+ .+||.+++.++++++...
T Consensus 146 ---d~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~------~~gC~~~l~~~~~~~~~~ 195 (221)
T PF00335_consen 146 ---DWFTSKWSSCSSPDSCPDCQC---------------------PDDCSSENSIY------TRGCYDKLREYLRSYLKY 195 (221)
T ss_dssp ---HHHHHHHHT---------TCS----------------------TTCCCCHCCT------ST-HHHHHHHHHCT----
T ss_pred ---ccccccccccccccccccccc---------------------ccccccccccc------CCChHHHHHHHHHHHHHH
Confidence 7754321 111111100000 00111111223 368889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc
Q 023208 236 VSVINIVVLIILVIFYVIGCAAFRNN 261 (285)
Q Consensus 236 v~~~~~~i~~iqii~~~~a~~l~~~~ 261 (285)
+++++++++++|++++++|+++.|++
T Consensus 196 ~~~~~~~~~~l~~~~~~~a~~l~~~~ 221 (221)
T PF00335_consen 196 IGIVSLAILVLQLIGIILACCLCRHI 221 (221)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988874
No 3
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=99.39 E-value=7.3e-14 Score=107.37 Aligned_cols=94 Identities=15% Similarity=0.270 Sum_probs=58.9
Q ss_pred heeccCCCCcccc--ccccccccccccccccccccCchhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcC-----
Q 023208 94 YAVTDKGSGRPVM--DRAYSEYHLEDYSGWLKDRVTDDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRK----- 166 (285)
Q Consensus 94 ~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~----- 166 (285)
+++++++...+.. .+.+++|..++ ..+.+||.+|+ +|+|||+++ |+ ||....
T Consensus 2 ~v~~~~v~~~~~~~~~~~~~~y~~~~---------~~~~~~d~iQ~----~l~CCG~~~-----~~---Dw~~~~~~~~~ 60 (105)
T cd03163 2 YVYRAKVEDELNPSIDKVFNKYNGTN---------AESRAVDYLQR----QLQCCGIHN-----YT---DWENTPWFKES 60 (105)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHH----hCcccCCCC-----HH---HHhhchhhhcC
Confidence 5666666444321 33444443221 35789999999 999999999 76 885421
Q ss_pred -CCCCCCCCCCCC-CCCCcccccCcccCCCCCCCCCCCccccccCccccccccCcchHHHHHHHHHHhh
Q 023208 167 -LNPVQSGCCKPP-ADCGFVYENETLWNPGGGLVGSNPDCTRWSNDQEQLCYQCDSCKAGVLASLKKSW 233 (285)
Q Consensus 167 -~~~vP~SCC~~~-~~C~~~~~~~t~~~~~~~~~~~~~~c~~~~~~~~~gC~~~~GC~~~l~~~l~~~~ 233 (285)
...||.|||... ..|+.... ....+|. +||.+++.+++++++
T Consensus 61 ~~~~vP~SCC~~~~~~C~~~~~-------------------~~~~i~~------~GC~~~~~~~~~~~~ 104 (105)
T cd03163 61 KNNSVPLSCCKETFTSCTGSLT-------------------QPKDLYQ------EGCEAKLVKKLQEVM 104 (105)
T ss_pred CCCccCcCccCCCCCCcccCCC-------------------CCCchhh------hccHHHHHHHHHHHh
Confidence 246999999643 23532100 0013455 467799999999886
No 4
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=99.37 E-value=1.6e-13 Score=105.09 Aligned_cols=75 Identities=11% Similarity=0.133 Sum_probs=50.4
Q ss_pred CchhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcC---CCCCCCCCCCCCCCCCcccccCcccCCCCCCCCCCCc
Q 023208 127 TDDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRK---LNPVQSGCCKPPADCGFVYENETLWNPGGGLVGSNPD 203 (285)
Q Consensus 127 ~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~---~~~vP~SCC~~~~~C~~~~~~~t~~~~~~~~~~~~~~ 203 (285)
..+.+||.+|+ +|+|||+++ |+ ||.... ...||.|||.....|+...... .
T Consensus 27 ~~~~~~d~iQ~----~l~CCG~~~-----~~---Dw~~~~~~~~~~vP~SCC~~~~~C~~~~~~~------------~-- 80 (104)
T cd03161 27 ERSDAVDTVQR----TLHCCGVEN-----YT---DWLNSPYFLEKGIPLSCCKNRSDCSPQDLKN------------L-- 80 (104)
T ss_pred hHHHHHHHHHh----cCcCcCCCC-----hh---hhhccccccCCCcCcccccCCCCCCcccccc------------c--
Confidence 35679999999 999999999 77 886431 1469999997655565321100 0
Q ss_pred cccccCccccccccCcchHHHHHHHHHHhh
Q 023208 204 CTRWSNDQEQLCYQCDSCKAGVLASLKKSW 233 (285)
Q Consensus 204 c~~~~~~~~~gC~~~~GC~~~l~~~l~~~~ 233 (285)
.....++|. +||.+++.+++++++
T Consensus 81 ~~~~~~i~~------~GC~~~~~~~~~~n~ 104 (104)
T cd03161 81 TKAATKVYQ------QGCFTLVTSFMEANM 104 (104)
T ss_pred cccccccch------hccHHHHHHHHHHhC
Confidence 000123555 466799999999874
No 5
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=99.37 E-value=1.1e-13 Score=105.35 Aligned_cols=97 Identities=14% Similarity=0.016 Sum_probs=62.3
Q ss_pred HHhhheeccCCCCcccc--ccccccccccccccccccccCchhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcCC
Q 023208 90 IIFAYAVTDKGSGRPVM--DRAYSEYHLEDYSGWLKDRVTDDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRKL 167 (285)
Q Consensus 90 ~i~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~~ 167 (285)
||++|++++++...+.. .+.+++|..++ ...+.+||.+|+ +|+|||+++ +. ||+.
T Consensus 1 gi~~~v~r~~i~~~i~~~~~~~i~~y~~~~--------~~~~~~~d~lQ~----~l~CCG~~~-----~~---d~~~--- 57 (100)
T cd03154 1 GIVGAVYKPKIENELKEKNTKLLSLLGQNA--------KSVKKSLEKFQK----ELKCCGLVN-----GA---DDWG--- 57 (100)
T ss_pred CEEEEEeHHHHHHHHHHHHHHHHHHcCCCh--------HHHHHHHHHHHH----cCCCCCCCC-----ch---hhcc---
Confidence 46789999988655421 44555553221 135789999999 999999999 65 7764
Q ss_pred CCCCCCCCCC-CCCCCcccccCcccCCCCCCCCCCCccccccCccccccccCcchHHHHHHHHHHhh
Q 023208 168 NPVQSGCCKP-PADCGFVYENETLWNPGGGLVGSNPDCTRWSNDQEQLCYQCDSCKAGVLASLKKSW 233 (285)
Q Consensus 168 ~~vP~SCC~~-~~~C~~~~~~~t~~~~~~~~~~~~~~c~~~~~~~~~gC~~~~GC~~~l~~~l~~~~ 233 (285)
..||+|||+. ...|... ..+ ....+|+ +||.+++.+|+++++
T Consensus 58 ~~vP~SCcc~~~~~c~~~-----------------~~~-~~~~~~~------~GC~~~i~~~~~~~~ 100 (100)
T cd03154 58 NDIPASCNCTTTQSDCVV-----------------AYY-GGSNVYK------EPCISKIKDFLKKNL 100 (100)
T ss_pred CCCCCCCcCCCCCCCccc-----------------ccC-CCcCccc------cccHHHHHHHHHhhC
Confidence 3699999643 3333210 000 0123455 466699999999874
No 6
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=99.36 E-value=1.4e-13 Score=107.81 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=61.2
Q ss_pred heeccCCCCcccc--ccccccccccccccccccccCchhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcC-----
Q 023208 94 YAVTDKGSGRPVM--DRAYSEYHLEDYSGWLKDRVTDDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRK----- 166 (285)
Q Consensus 94 ~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~----- 166 (285)
+++++++...+.. .+.+++|+..+. +...+.+||.+|+ +|+|||+++ |+ ||....
T Consensus 2 ~v~r~~v~~~i~~~l~~~i~~y~~~~~------~~~~~~~~d~iQ~----~l~CCG~~~-----~~---Dw~~~~~~~~~ 63 (117)
T cd03160 2 YFQRDKLKQEMGDIVEKVIQNYGGNPE------NKTAEEAWDYVQF----QLQCCGWTG-----PQ---DWTDNSLIKNS 63 (117)
T ss_pred ceeHHHHHHHHHHHHHHHHHhcCCCCC------CchHHHHHHHHHh----hCcccCCCC-----ch---hHHhchhccCC
Confidence 5667766544321 344555543211 1246789999999 999999999 77 775321
Q ss_pred -CCCCCCCCCCCCCC-CCcccccCcccCCCCCCCCCCCccccc----cCccccccccCcchHHHHHHHHHHhh
Q 023208 167 -LNPVQSGCCKPPAD-CGFVYENETLWNPGGGLVGSNPDCTRW----SNDQEQLCYQCDSCKAGVLASLKKSW 233 (285)
Q Consensus 167 -~~~vP~SCC~~~~~-C~~~~~~~t~~~~~~~~~~~~~~c~~~----~~~~~~gC~~~~GC~~~l~~~l~~~~ 233 (285)
...||.|||..... ++.. .....|... ..+|+ +||.+++.+|+++++
T Consensus 64 ~~~~vP~SCC~~~~~~~~~~--------------~~~~~C~~~~~~~~~iy~------~GC~~~l~~~~~~n~ 116 (117)
T cd03160 64 SEPLYPCSCCNSSATADSPR--------------PSKGFCEAPASLDWPVYQ------EGCMEKLQSWLNENL 116 (117)
T ss_pred CCCCCCHhhhcCCccccccC--------------CCCcccCCCCccccchHH------HhhHHHHHHHHHHhc
Confidence 13699999975321 1100 011234211 12444 577799999999986
No 7
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=99.35 E-value=1.5e-13 Score=101.84 Aligned_cols=59 Identities=15% Similarity=0.348 Sum_probs=47.3
Q ss_pred chhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcCCCCCCCCCCCCCCCCCcccccCcccCCCCCCCCCCCccccc
Q 023208 128 DDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRKLNPVQSGCCKPPADCGFVYENETLWNPGGGLVGSNPDCTRW 207 (285)
Q Consensus 128 ~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~~~~vP~SCC~~~~~C~~~~~~~t~~~~~~~~~~~~~~c~~~ 207 (285)
.+.+||.+|+ .|+|||+++ |+ ||. ..+|+|||... |
T Consensus 28 ~~~~~d~iQ~----~l~CCG~~~-----~~---Dw~----~~vP~SCC~~~--~-------------------------- 63 (86)
T cd03164 28 TSEAWDMIQS----NLQCCGING-----TT---DWG----SGVPSSCCSSD--T-------------------------- 63 (86)
T ss_pred HHHHHHHHHH----HhcCCCCCC-----hh---hhC----CCCChhhcCCC--C--------------------------
Confidence 4789999999 999999999 87 995 36999999631 1
Q ss_pred cCccccccccCcchHHHHHHHHHHhhHHHH
Q 023208 208 SNDQEQLCYQCDSCKAGVLASLKKSWRKVS 237 (285)
Q Consensus 208 ~~~~~~gC~~~~GC~~~l~~~l~~~~~~v~ 237 (285)
++|. +||.+++.+++++++.+++
T Consensus 64 -~~~~------~GC~~~~~~~~~~~~~iig 86 (86)
T cd03164 64 -EYKV------EGCYKKLKNWFESNFLYTG 86 (86)
T ss_pred -cccc------ccHHHHHHHHHHHHHHHhC
Confidence 2344 4777999999999998764
No 8
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=99.33 E-value=2.8e-13 Score=106.93 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=48.1
Q ss_pred CchhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcC------------CCCCCCCCCCCC-------CCCCccccc
Q 023208 127 TDDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRK------------LNPVQSGCCKPP-------ADCGFVYEN 187 (285)
Q Consensus 127 ~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~------------~~~vP~SCC~~~-------~~C~~~~~~ 187 (285)
..+.+||.+|+ +|+|||++| |+ ||.... ...||.|||... ..|+.....
T Consensus 27 ~~~~~~D~iQ~----~l~CCG~~~-----~~---DW~~~~~~~~~~~~~~~~~~~vP~SCC~~~~~~~~~~~~C~~~~~~ 94 (121)
T cd03159 27 DLQNLIDFLQE----YWQCCGARG-----PD---DWNLNIYFNCTDSNPSRERCGVPFSCCVKDPAEDVVNTQCGYDVRK 94 (121)
T ss_pred HHHHHHHHHHH----hccCCCCCC-----hH---HhcccccccccCCCCCCCCCCCCcccccCCcccccccCccCccccc
Confidence 35789999999 999999999 76 775321 125999999732 235321100
Q ss_pred CcccCCCCCCCCCCCccccccCccccccccCcchHHHHHHHHHHhh
Q 023208 188 ETLWNPGGGLVGSNPDCTRWSNDQEQLCYQCDSCKAGVLASLKKSW 233 (285)
Q Consensus 188 ~t~~~~~~~~~~~~~~c~~~~~~~~~gC~~~~GC~~~l~~~l~~~~ 233 (285)
. + ......++|. +||.+++.+|+++++
T Consensus 95 ~-----~--------~~~~~~~i~~------~GC~~~l~~~~~~n~ 121 (121)
T cd03159 95 K-----P--------ELELQHHIHT------KGCVQAFEKWLQDNL 121 (121)
T ss_pred c-----c--------cccccCCchH------hhCHHHHHHHHHhcC
Confidence 0 0 0001123555 467799999999874
No 9
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=99.32 E-value=3.1e-13 Score=102.73 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=48.3
Q ss_pred CchhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcC---CCCCCCCCCCCC-CCCCcccccCcccCCCCCCCCCCC
Q 023208 127 TDDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRK---LNPVQSGCCKPP-ADCGFVYENETLWNPGGGLVGSNP 202 (285)
Q Consensus 127 ~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~---~~~vP~SCC~~~-~~C~~~~~~~t~~~~~~~~~~~~~ 202 (285)
..+.+||.+|+ +|+|||+++ |+ ||.... ...||.|||... ..|+...
T Consensus 27 ~~~~~~d~iQ~----~l~CCG~~~-----~~---Dw~~~~~~~~~~vP~SCC~~~~~~C~~~~----------------- 77 (99)
T cd03166 27 DFRKILDRMQK----DLKCCGANN-----YT---DWENIPSLDTDSVPDSCCINVTKGCGINF----------------- 77 (99)
T ss_pred HHHHHHHHHHH----HhcccCCCC-----hh---hhhcccCCCCCCCCcCccCcCCCCcccCC-----------------
Confidence 35789999999 999999999 87 886431 246999999642 2343210
Q ss_pred ccccccCccccccccCcchHHHHHHHHHHhh
Q 023208 203 DCTRWSNDQEQLCYQCDSCKAGVLASLKKSW 233 (285)
Q Consensus 203 ~c~~~~~~~~~gC~~~~GC~~~l~~~l~~~~ 233 (285)
....+|. +||.+++.+|+++++
T Consensus 78 ---~~~~~y~------~GC~~~~~~~~~~~~ 99 (99)
T cd03166 78 ---DEKVIHL------EGCVTKIEGWLKKNI 99 (99)
T ss_pred ---CccchHH------hcCHHHHHHHHHHhC
Confidence 0113455 466799999999874
No 10
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=99.30 E-value=6.4e-13 Score=102.90 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=47.8
Q ss_pred CchhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcC--------CCCCCCCCCCCCC-CCCcccccCcccCCCCCC
Q 023208 127 TDDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRK--------LNPVQSGCCKPPA-DCGFVYENETLWNPGGGL 197 (285)
Q Consensus 127 ~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~--------~~~vP~SCC~~~~-~C~~~~~~~t~~~~~~~~ 197 (285)
..+.+||.+|+ +|+|||+++ |+ ||.... ...||.|||.... .|+...
T Consensus 30 ~~~~~~d~iQ~----~l~CCG~~~-----~~---Dw~~~~~~~~~~~~~~~vP~SCC~~~~~~c~~~~------------ 85 (110)
T cd03155 30 ALTLTVDELQQ----EFKCCGSNN-----YT---DWQDSEWINSNEANGRLVPDSCCKTVVDRCGCLR------------ 85 (110)
T ss_pred HHHHHHHHHHH----hCcCcCCCC-----hh---hhhhccccccCCCCCCCCCccccCCCCCCccccc------------
Confidence 46789999999 999999999 76 886431 1469999997532 332100
Q ss_pred CCCCCccccccCccccccccCcchHHHHHHHHHHhh
Q 023208 198 VGSNPDCTRWSNDQEQLCYQCDSCKAGVLASLKKSW 233 (285)
Q Consensus 198 ~~~~~~c~~~~~~~~~gC~~~~GC~~~l~~~l~~~~ 233 (285)
....++|. +.+||.+++.+|+++++
T Consensus 86 -------~~~~~~~~----~~~GC~~~~~~~~~~~~ 110 (110)
T cd03155 86 -------DHPSNIYK----VEGGCIPKLEDFLYDHL 110 (110)
T ss_pred -------CChhcccc----ccCChHHHHHHHHHHhC
Confidence 00012343 01467799999999874
No 11
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=99.28 E-value=7.9e-13 Score=104.04 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=31.0
Q ss_pred CchhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcC----------CCCCCCCCCCCC
Q 023208 127 TDDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRK----------LNPVQSGCCKPP 178 (285)
Q Consensus 127 ~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~----------~~~vP~SCC~~~ 178 (285)
..+.+||.+|. +|+|||+++ |+ ||.... ...||.|||...
T Consensus 27 ~~~~~~d~lQ~----~l~CCG~~~-----~~---Dw~~~~~~~~~~~~~~~~~vP~SCC~~~ 76 (119)
T cd03158 27 DLQNIIDFVQK----EFKCCGGDD-----YR---DWSKNMYFNCSSPNPEACGVPYSCCIRA 76 (119)
T ss_pred HHHHHHHHHHH----HccCCCCCC-----hh---hcccccccccCCCCCcCCCcCcCcccCC
Confidence 46789999999 999999999 76 775311 135999999753
No 12
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=99.27 E-value=7.5e-13 Score=100.31 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=48.1
Q ss_pred CchhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcC-CCCCCCCCCCCC-CCCCcccccCcccCCCCCCCCCCCcc
Q 023208 127 TDDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRK-LNPVQSGCCKPP-ADCGFVYENETLWNPGGGLVGSNPDC 204 (285)
Q Consensus 127 ~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~-~~~vP~SCC~~~-~~C~~~~~~~t~~~~~~~~~~~~~~c 204 (285)
..+.+||.+|+ +|+|||+++ |+ ||.... ...||.|||... ..|+..
T Consensus 29 ~~~~~~d~~Q~----~l~CCG~~~-----~~---Dw~~~~~~~~vP~SCC~~~~~~C~~~-------------------- 76 (98)
T cd03165 29 GLTNAWDITQT----EFRCCGVTN-----YT---DWYEVLGENRVPDSCCQEDSQDCGRN-------------------- 76 (98)
T ss_pred HHHHHHHHHHH----hCcCcCCCC-----hh---HHHHhcCCCCCCHhhcCCCccccccC--------------------
Confidence 35789999999 999999999 87 886531 246999999642 234211
Q ss_pred ccccCccccccccCcchHHHHHHHHHHhh
Q 023208 205 TRWSNDQEQLCYQCDSCKAGVLASLKKSW 233 (285)
Q Consensus 205 ~~~~~~~~~gC~~~~GC~~~l~~~l~~~~ 233 (285)
....+|. +||.+++.+|+++++
T Consensus 77 -~~~~~~~------~GC~~~~~~~~~~~~ 98 (98)
T cd03165 77 -PTELWWK------TGCYEKVQQWLVDNL 98 (98)
T ss_pred -CccchHH------hhhHHHHHHHHHhcC
Confidence 0012444 577799999999874
No 13
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=99.27 E-value=1.2e-12 Score=103.17 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=30.7
Q ss_pred CchhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcC----------CCCCCCCCCCCC
Q 023208 127 TDDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRK----------LNPVQSGCCKPP 178 (285)
Q Consensus 127 ~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~----------~~~vP~SCC~~~ 178 (285)
..+.+||.+|+ +|+|||+++ |+ ||.... ...||.|||...
T Consensus 27 ~~~~~~d~iQ~----~l~CCG~~~-----~~---Dw~~~~~~~~~~~~~~~~~vP~SCC~~~ 76 (120)
T cd03167 27 DLRFLIDQVQL----GLQCCGASS-----YQ---DWQQNLYFNCSSPGVQACSLPASCCIDP 76 (120)
T ss_pred hHHHHHHHHHH----hccCCCCCC-----hH---HhcccccccCCCCCCCCCCCCcCccCCC
Confidence 34679999999 999999999 76 775321 126999999643
No 14
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=99.26 E-value=6.7e-13 Score=103.13 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=32.3
Q ss_pred CchhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhc---------CCCCCCCCCCCCC
Q 023208 127 TDDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLR---------KLNPVQSGCCKPP 178 (285)
Q Consensus 127 ~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~---------~~~~vP~SCC~~~ 178 (285)
..+.+||.+|+ +|+|||++| |+ ||... ....||.|||...
T Consensus 30 ~~~~~~d~iQ~----~l~CCG~~~-----~~---Dw~~~~~~~~~~~~~~~~vP~SCC~~~ 78 (114)
T cd03156 30 AITSTWNRVMI----ELKCCGVNG-----PT---DFVDSTSFFRQKNEPNSPYPESCCKRN 78 (114)
T ss_pred HHHHHHHHHHh----cccCcCCCC-----cH---HHHhhhHHhccCCCCCCcCCHHHcCcc
Confidence 46889999999 999999999 77 77543 1257999999753
No 15
>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her
Probab=99.19 E-value=5.6e-12 Score=101.82 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=55.7
Q ss_pred ccccccccccccccccccccCchhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhh-----cC---------------
Q 023208 107 DRAYSEYHLEDYSGWLKDRVTDDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSL-----RK--------------- 166 (285)
Q Consensus 107 ~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~-----~~--------------- 166 (285)
.+.++.|+.+++.. +...+.+||.+|+ +|+|||++| |+ ||.. +.
T Consensus 16 ~~~i~~Y~~~~~~~----~~~~~~~~D~lQ~----~fkCCG~~~-----y~---DW~~~~w~~n~y~~~~~~~~~~~~~~ 79 (143)
T cd03162 16 KNAMKFYKDTDTPG----RCFLKKTIDMLQI----EFQCCGNNG-----YR---DWFEIQWISNRYLDFSSKEVKDRIKS 79 (143)
T ss_pred HHHHHHhcCCcccc----hhhHHHHHHHHHH----hccCCCCCC-----hh---hhhhhhhhcccccCCCccchhhhhhc
Confidence 45566665433211 1136789999999 999999999 55 5532 11
Q ss_pred -------CCCCCCCCCCCC--CCCCcccccCcccCCCCCCCCCCCccccccCccccccccCcchHHHHHHHHHHh
Q 023208 167 -------LNPVQSGCCKPP--ADCGFVYENETLWNPGGGLVGSNPDCTRWSNDQEQLCYQCDSCKAGVLASLKKS 232 (285)
Q Consensus 167 -------~~~vP~SCC~~~--~~C~~~~~~~t~~~~~~~~~~~~~~c~~~~~~~~~gC~~~~GC~~~l~~~l~~~ 232 (285)
...||.|||.+. ..|........ .+.. ..+.-+...++|+ +||.+++.+|+++.
T Consensus 80 ~~~~~~~~~~vP~SCc~~~~~~~C~~~~~~~~----~a~~--~~~~~~~~~~i~~------~GC~~~l~~~~~~~ 142 (143)
T cd03162 80 NVDGRYLTDGVPFSCCNPSSPRPCIQHQITDN----SAHY--NYDYQTEELNLWT------RGCREALLEYYTSK 142 (143)
T ss_pred ccccccccCCcCCcccCCCCCCchhhhccccc----cccc--ccccCcccccchH------HHHHHHHHHHHHhc
Confidence 147999999864 34543211000 0000 0000011124555 57889999999864
No 16
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=99.18 E-value=2e-11 Score=93.58 Aligned_cols=69 Identities=10% Similarity=0.200 Sum_probs=47.0
Q ss_pred chhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcC-CCCCCCCCCCCCC-CCCcccccCcccCCCCCCCCCCCccc
Q 023208 128 DDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRK-LNPVQSGCCKPPA-DCGFVYENETLWNPGGGLVGSNPDCT 205 (285)
Q Consensus 128 ~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~-~~~vP~SCC~~~~-~C~~~~~~~t~~~~~~~~~~~~~~c~ 205 (285)
.+.+||.+|+ +|+|||+++ |+ ||.... ...||.|||.... .|+..... .
T Consensus 31 ~~~~~D~iQ~----~l~CCG~~~-----~~---DW~~~~~~~~vP~SCC~~~~~~C~~~~~~-----------------~ 81 (103)
T cd03157 31 LTHAWNSFQT----EFKCCGVIY-----FT---DWLEMTEMEWPPDSCCSNQYPGCARQAHY-----------------N 81 (103)
T ss_pred HHHHHHHHHH----hccCccCCC-----hh---HHhccCCCCCCCccccCCCCCCcCcCCCC-----------------c
Confidence 5789999999 999999999 87 996531 1359999997532 45422100 0
Q ss_pred cccCccccccccCcchHHHHHHHHHH
Q 023208 206 RWSNDQEQLCYQCDSCKAGVLASLKK 231 (285)
Q Consensus 206 ~~~~~~~~gC~~~~GC~~~l~~~l~~ 231 (285)
....+|+ +||.+++.++++.
T Consensus 82 ~~~~iy~------~GC~~~i~~~l~~ 101 (103)
T cd03157 82 DLSDLYQ------EGCGPKIYSFIRG 101 (103)
T ss_pred ccccccc------cchHHHHHHHHHh
Confidence 0013455 4677999999975
No 17
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=99.11 E-value=1.6e-11 Score=91.01 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=46.3
Q ss_pred CchhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcCCCCCCCCCCCCCCCCCcccccCcccCCCCCCCCCCCcccc
Q 023208 127 TDDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRKLNPVQSGCCKPPADCGFVYENETLWNPGGGLVGSNPDCTR 206 (285)
Q Consensus 127 ~~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~~~~vP~SCC~~~~~C~~~~~~~t~~~~~~~~~~~~~~c~~ 206 (285)
..+.+||.+|. +|+|||++| ++ ||.... ..||.|||.... + .|.
T Consensus 27 ~~~~~~d~iq~----~l~CCG~~~-----~~---D~~~~~-~~vP~SCc~~~~-~---------------------~~~- 70 (90)
T cd03127 27 DFQEAMDALQS----TFECCGVNG-----PT---DYLDLR-LLVPSSCCKGTD-G---------------------NCG- 70 (90)
T ss_pred hHHHHHHHHHH----hCcCcCCCC-----hH---HHccCC-CCCCHhhcCCCC-C---------------------CCc-
Confidence 35789999999 999999999 77 886532 579999996432 0 111
Q ss_pred ccCccccccccCcchHHHHHHHHHHh
Q 023208 207 WSNDQEQLCYQCDSCKAGVLASLKKS 232 (285)
Q Consensus 207 ~~~~~~~gC~~~~GC~~~l~~~l~~~ 232 (285)
...|. +||.+++.+++.++
T Consensus 71 -~~~~~------~GC~~~~~~~~~~~ 89 (90)
T cd03127 71 -LNLYT------EGCLEKLVDFLRSN 89 (90)
T ss_pred -cchhh------HccHHHHHHHHHhh
Confidence 12444 57779999999876
No 18
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=98.97 E-value=9e-11 Score=86.58 Aligned_cols=55 Identities=15% Similarity=0.024 Sum_probs=40.6
Q ss_pred chhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcCCCCCCCCCCCCCCCCCcccccCcccCCCCCCCCCCCccccc
Q 023208 128 DDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRKLNPVQSGCCKPPADCGFVYENETLWNPGGGLVGSNPDCTRW 207 (285)
Q Consensus 128 ~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~~~~vP~SCC~~~~~C~~~~~~~t~~~~~~~~~~~~~~c~~~ 207 (285)
.+.+||.+|+ .|+|||++| |. || .||.||++.+. .
T Consensus 30 ~~~~~d~iQ~----~l~CCG~~~-----~~---D~------~vP~SC~~~~~--------~------------------- 64 (84)
T cd03152 30 LKETLKAIHF----ALDCCGPTG-----GL---EQ------FVTDTCPKKEG--------L------------------- 64 (84)
T ss_pred HHHHHHHHHH----HHcCCCCCC-----Cc---cc------ccCCCCCCCCc--------h-------------------
Confidence 3468999999 999999999 87 88 38999853111 0
Q ss_pred cCccccccccCcchHHHHHHHHHHhh
Q 023208 208 SNDQEQLCYQCDSCKAGVLASLKKSW 233 (285)
Q Consensus 208 ~~~~~~gC~~~~GC~~~l~~~l~~~~ 233 (285)
..+|. +||.+++.+++++++
T Consensus 65 ~~~~~------~gC~~~i~~~~~~~~ 84 (84)
T cd03152 65 ENLIT------KSCPDAIDDVFNSKL 84 (84)
T ss_pred hhhcc------CCCcHHHHHHHHccC
Confidence 12344 466699999998874
No 19
>cd03151 CD81_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD81_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD81, also referred to as Target for anti-proliferative antigen-1, TAPA-1, is found in virtually all tissues, may be involved in regulation of cell growth and has been described as a member of the CD19/CD21/Leu-13 signal transduction complex identified on B cells (the B-Cell co-receptor).
Probab=98.46 E-value=2.6e-08 Score=73.46 Aligned_cols=33 Identities=9% Similarity=-0.038 Sum_probs=26.6
Q ss_pred chhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcCCCCCCCCCC
Q 023208 128 DDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRKLNPVQSGCC 175 (285)
Q Consensus 128 ~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~~~~vP~SCC 175 (285)
.+.+||.+|+ .|+|||++| ++ |+.. ..+|.+|.
T Consensus 30 ~~~~~d~iQ~----~l~CCG~~~-----~~---d~~~---~~~~~~C~ 62 (84)
T cd03151 30 GTAVLKTFHS----TLDCCGKGN-----LT---ALLS---LLSTDLCP 62 (84)
T ss_pred HHHHHHHHHH----hcCCCCCCC-----Cc---chHH---HHHhCCCC
Confidence 5678999999 999999999 77 6653 35777874
No 20
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=90.73 E-value=6.7 Score=33.39 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q 023208 43 QWPLIVIGVSIMVVSLAGFAGACYRNTHLMRFYLFVMFFIIAALIGFI 90 (285)
Q Consensus 43 ~~~li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ll~vl~i~ei~~~ 90 (285)
+++-|.+-.+-+++-++|.+||..-++..+.+|.+-..+-+.--+-..
T Consensus 33 qWaPIl~NF~hIi~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wNvfii 80 (200)
T PF05640_consen 33 QWAPILANFLHIIFVILGLFGAIQYRPRYIIVYAVWTALWVTWNVFII 80 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHhHHHH
Confidence 344555666667777899999999999999999988777666555443
No 21
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=86.78 E-value=9.2 Score=32.36 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhh--HHHHHHHHHHHHHHHHH
Q 023208 8 IGLLNFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWP--LIVIGVSIMVVSLAGFA 62 (285)
Q Consensus 8 L~~~N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~--li~~G~~i~iis~lGc~ 62 (285)
+-++-.+|+++|..++.+|...+.....+ ..+. ..+ .-.+|+.++++|.++.+
T Consensus 5 ~eiI~~vLLliG~~f~ligaIGLlRfPD~-YtRL-HAATKa~TLGv~LILlgv~l~~ 59 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAIGVIRLPDV-YTRT-HAAGISNTFGVSLLLFATVGYF 59 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcH-HHHh-hccccchhhhHHHHHHHHHHHH
Confidence 44566678888999999998888876421 1121 122 55566666666655544
No 22
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=86.73 E-value=0.8 Score=32.17 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCcch----------hhhhhhhh-HHHHHHHHHHHH
Q 023208 11 LNFFTFLLSIPIIGGGIWLSSRANNTD----------CLKFLQWP-LIVIGVSIMVVS 57 (285)
Q Consensus 11 ~N~lf~i~Gi~ll~~Gi~~~~~~~~~~----------~~~~~~~~-li~~G~~i~iis 57 (285)
-|.+++.+|++++++|-++.+-....+ ..+....| ++..|.++.+.+
T Consensus 6 ~Nyill~iG~~vIilGfilMsg~~s~dp~~fn~~Ifs~~rI~vAPiv~~~Gf~~~i~A 63 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSGGGSDDPNVFNPDIFSFRRITVAPIVVLIGFVIIIYA 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeCCCCCCccccCccccceeeEEehhHHHHHHHHHHhhe
Confidence 599999999999999999988654322 11223356 566666555543
No 23
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=86.19 E-value=6.4 Score=29.82 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Q 023208 6 HLIGLLNFFTFLLSIPIIGGGIWLSSRANN 35 (285)
Q Consensus 6 ~~L~~~N~lf~i~Gi~ll~~Gi~~~~~~~~ 35 (285)
.+..+.+.+++++.++.+++++|.+.+--.
T Consensus 3 ~l~~~~~~i~~~l~~~~~~~~v~Alv~aa~ 32 (100)
T PF10724_consen 3 FLFQIQGWILLALSLVALVLAVWALVDAAR 32 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566778899999999999999999988643
No 24
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=84.98 E-value=1.2 Score=35.33 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHh-hhhhcccccCCCCCccccccc
Q 023208 241 IVVLIILVIFYVIGC-AAFRNNRRIDNDEPYGEARMT 276 (285)
Q Consensus 241 ~~i~~iqii~~~~a~-~l~~~~~~~~~~~~~~~~~~~ 276 (285)
++++++-++.+++.+ +..|+.||++.++-||+.-|+
T Consensus 5 ~~iii~~i~l~~~~~~~~~rRR~r~G~~P~~gt~w~~ 41 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRRRRRRGLQPIYGTRWMA 41 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCceecC
Confidence 333333333333333 334444555788999999998
No 25
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.69 E-value=3 Score=35.06 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 023208 10 LLNFFTFLLSIPIIGGGIWLSS 31 (285)
Q Consensus 10 ~~N~lf~i~Gi~ll~~Gi~~~~ 31 (285)
+.+++..++|+++++.|+-++.
T Consensus 6 i~~i~~iilgilli~~gI~~Lv 27 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAALV 27 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555543
No 26
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=83.40 E-value=11 Score=25.74 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhccc
Q 023208 17 LLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLAGFAGACYRNT 69 (285)
Q Consensus 17 i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~lGc~Ga~~es~ 69 (285)
+.|++.+.+|+++...++.. .......+|..+++.|......+.++++
T Consensus 1 i~Gil~iv~Gi~~l~~p~~~-----~~~~~~i~g~~~i~~Gi~~l~~~~~~~~ 48 (72)
T PF03729_consen 1 ISGILFIVLGILLLFNPDAS-----LAALAIILGIWLIISGIFQLISAFRRRK 48 (72)
T ss_pred CHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46889999999999988522 2233788899999999999988888543
No 27
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=82.69 E-value=0.39 Score=38.42 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 023208 14 FTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLAGFAGACYRNTHLMRFYLFVMFFIIAALIG 88 (285)
Q Consensus 14 lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ll~vl~i~ei~ 88 (285)
+-.++|++.+.+|+.+....... ...... -+-.|++.++.|.+|..+..|.+++++..+.++-++.++.-++
T Consensus 5 ~qI~lGi~~i~lGi~~~~~~~~~--~~~~~~-piW~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~~~a~~ 76 (150)
T PF04103_consen 5 IQILLGILSIVLGIIALSLSSSV--LVYIGY-PIWGGIFFIISGILGIASEKKPTKCLVIASLVLSIVSALLALA 76 (150)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH--HHHhcc-cHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHH
Confidence 45678888888998888765431 111222 3445889999999999999999999998888776666655443
No 28
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=81.53 E-value=3.6 Score=32.04 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHH
Q 023208 9 GLLNFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLA 59 (285)
Q Consensus 9 ~~~N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~l 59 (285)
+.+-++++++|.+++++|+.+....-..+ .--.++++++|+++++=|+-
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~~i~~~--~~~~~~llilG~L~fIPG~Y 92 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFGHIDGD--RDRGWALLILGILCFIPGFY 92 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCC--CcccchHHHHHHHHHhccHH
Confidence 45567788999999999999888762111 11245689999998876654
No 29
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=81.53 E-value=3.8 Score=39.33 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=34.3
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 023208 43 QWP-LIVIGVSIMVVSLAGFAGACYRNTHLMRFYLFVMFFIIAA 85 (285)
Q Consensus 43 ~~~-li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ll~vl~i~ 85 (285)
.+| .++.=.+.+++.+++++|.+|+|||++++|.++=++.+++
T Consensus 209 RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvi 252 (526)
T KOG4433|consen 209 RWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVI 252 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 455 6666678889999999999999999999988765554443
No 30
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=79.15 E-value=5.9 Score=39.47 Aligned_cols=65 Identities=17% Similarity=0.377 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023208 8 IGLLNFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLAGFAGACYRNTHLMRFYLFVMFFIIA 84 (285)
Q Consensus 8 L~~~N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ll~vl~i 84 (285)
+.+.-+++.++|+++++-|+|+..-..+. -.++.|+.+++.+++ .+|+++-.|.+|+++++...+
T Consensus 3 ~~~~~~~~~~~gl~l~~gg~~l~~lggs~--------yy~iagl~~l~~~~l----l~~~k~aal~lya~~~~~t~~ 67 (773)
T COG4993 3 VTLTALVIALCGLALLIGGIWLVALGGSW--------YYLIAGLVLLLSAWL----LLRRKRAALWLYALVLLGTLV 67 (773)
T ss_pred hhHHHHHHHHHHHHHhccceeEEeeCCch--------HHHHHHHHHHHHHHH----HhccchhHHHHHHHHHHHHhH
Confidence 45667888999999999999998766421 155666666666655 467888888888877765443
No 31
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=78.43 E-value=8.3 Score=36.86 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=29.3
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 023208 42 LQWP-LIVIGVSIMVVSLAGFAGACYRNTHLMRFYLFVMFF 81 (285)
Q Consensus 42 ~~~~-li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ll~v 81 (285)
+.+| .+++=++.+++++++++|..|.|||.+.++.++=++
T Consensus 207 ~Rw~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l 247 (418)
T cd07912 207 YRWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLF 247 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3445 444445667888899999999999999998554333
No 32
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=76.55 E-value=31 Score=29.22 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 023208 8 IGLLNFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLAGFAGACYRNTHLMRFYLFVMFFIIAALI 87 (285)
Q Consensus 8 L~~~N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ll~vl~i~ei 87 (285)
+++++.++++++++-++.+.....+.....-......+ . ++-++.+++|..|.-|.|.-+|..|++..+++-+.-+
T Consensus 40 l~~~h~ll~l~~~a~v~~~~L~~i~~~~~p~p~~Wey~-~---~lS~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl 115 (186)
T PF07086_consen 40 LILFHALLWLLMAAKVSVDILLEISELQIPSPYQWEYI-W---CLSLIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLPL 115 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHH-H---HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 56788999988888877777744433211100111111 1 2245666778888888888889988876666655555
Q ss_pred HHHHh
Q 023208 88 GFIIF 92 (285)
Q Consensus 88 ~~~i~ 92 (285)
..+..
T Consensus 116 ~~g~~ 120 (186)
T PF07086_consen 116 IYGAM 120 (186)
T ss_pred HHHHH
Confidence 44433
No 33
>PF15125 TMEM238: TMEM238 protein family
Probab=76.02 E-value=7.3 Score=26.83 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 023208 8 IGLLNFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLAGFAG 63 (285)
Q Consensus 8 L~~~N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~lGc~G 63 (285)
++.+-++|=++|++++-+|++.-.+.. + -++=.|++++.+|+++.+-
T Consensus 6 ~f~laV~fD~vGl~~Ll~GiFa~l~f~-----D----~lvY~GaliiflSL~~Wv~ 52 (65)
T PF15125_consen 6 FFWLAVVFDVVGLVMLLTGIFAPLDFY-----D----FLVYTGALIIFLSLLWWVF 52 (65)
T ss_pred hhHHHHHHHHhhHHHHHHHHhcchhHH-----H----HHHHHhHHHHHHHHHHHHH
Confidence 345778888889999999988876443 1 2667788888888887653
No 34
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=74.06 E-value=26 Score=29.64 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhccc
Q 023208 14 FTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLAGFAGACYRNT 69 (285)
Q Consensus 14 lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~lGc~Ga~~es~ 69 (285)
.+.+.|++++.+|++.+.++... ......++|.+.++.|.+=..++..+++
T Consensus 21 ~~l~~Gv~lii~Gl~~l~~P~~s-----~~~l~~~vG~~lli~Gi~~ii~af~~r~ 71 (185)
T COG3247 21 WVLLLGVLLIILGLLALFNPAIS-----TVALVYVVGILLLISGIIEIISAFGNRS 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46789999999999999887421 1223788899999999988888887665
No 35
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=73.35 E-value=13 Score=31.18 Aligned_cols=40 Identities=5% Similarity=0.190 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccch-------------hHHHHHHHHHHHHHH
Q 023208 46 LIVIGVSIMVVSLAGFAGACYRNTH-------------LMRFYLFVMFFIIAA 85 (285)
Q Consensus 46 li~~G~~i~iis~lGc~Ga~~es~~-------------lL~~Y~~ll~vl~i~ 85 (285)
+++.++++++++++-.....+..+. -...|+++++-+++.
T Consensus 35 ~~~a~i~l~ilai~q~~~~~~~~~~~~~~h~h~~~~~~~~~~y~l~~iPll~g 87 (182)
T PF09323_consen 35 LYFAAILLLILAIVQLWRWFRPKRRKEDCHDHGHSKSKKLWSYFLFLIPLLIG 87 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence 7788888888999988888875443 556666665544443
No 36
>PF06706 CTV_P6: Citrus tristeza virus 6-kDa protein; InterPro: IPR009584 This family consists of several Citrus tristeza virus (CTV) 6 kDa, 51 residue long hydrophobic (P6) proteins. The function of this family is unknown.
Probab=73.12 E-value=2.4 Score=26.70 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=10.6
Q ss_pred cccCCCCCcccccc
Q 023208 262 RRIDNDEPYGEARM 275 (285)
Q Consensus 262 ~~~~~~~~~~~~~~ 275 (285)
+...+.+|||+|.+
T Consensus 37 ~pvrn~spy~that 50 (51)
T PF06706_consen 37 KPVRNTSPYDTHAT 50 (51)
T ss_pred ccccCCCCCcCccc
Confidence 45557799999965
No 37
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=67.90 E-value=22 Score=24.45 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=35.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHH
Q 023208 2 RNSNHLIGLLNFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLA 59 (285)
Q Consensus 2 ~~~K~~L~~~N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~l 59 (285)
++.|.+-=.+.++.+++|.+.+.++.+..... ..++.+|+.+++.|.+
T Consensus 5 ~~fk~iW~~~DIi~Fila~i~i~it~F~~n~~----------~g~i~i~I~l~l~G~i 52 (63)
T PF06341_consen 5 KFFKTIWKYFDIILFILAMIFINITAFLINQI----------AGLISIGITLFLAGLI 52 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 45677777888889999999999888877422 2377778777777766
No 38
>COG2245 Predicted membrane protein [Function unknown]
Probab=63.49 E-value=87 Score=26.12 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcch-hhhhhhhh--HHHHHHHHHHHHHHHHH-HHHhccchhHHHHHHHHHHHHHH
Q 023208 12 NFFTFLLSIPIIGGGIWLSSRANNTD-CLKFLQWP--LIVIGVSIMVVSLAGFA-GACYRNTHLMRFYLFVMFFIIAA 85 (285)
Q Consensus 12 N~lf~i~Gi~ll~~Gi~~~~~~~~~~-~~~~~~~~--li~~G~~i~iis~lGc~-Ga~~es~~lL~~Y~~ll~vl~i~ 85 (285)
..++.+.|.+++-++++++++.-..+ .-+.+-.+ +-.+|.+.++.+..|+. -+...+..++..+....+-.+++
T Consensus 27 ~~ilSlVG~VLvlval~~iS~~~ge~~IF~~yl~~~v~~l~~~vvvifatag~s~~~~~~~~~~~~~~~~~~l~~~La 104 (182)
T COG2245 27 LWILSLVGLVLVLVALYMISKQVGEDRIFNNYLIAVVLGLVGFVVVIFATAGFSLVALLLGTFMLPAHGLSALGSFLA 104 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccccCchhHHHHHHHHHH
Confidence 34688999999999999999874322 11111222 44444444455544432 12223334444444444333333
No 39
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=58.57 E-value=21 Score=23.32 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=16.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 023208 40 KFLQWPLIVIGVSIMVVSLAG 60 (285)
Q Consensus 40 ~~~~~~li~~G~~i~iis~lG 60 (285)
.....|.+++|+++++.+..+
T Consensus 22 ~i~~lP~~~~Gi~Lii~g~v~ 42 (49)
T PF11384_consen 22 RIQALPAILIGIGLIISGGVG 42 (49)
T ss_pred chhccHHHHHhHHHHhhhhhh
Confidence 455678999999888887765
No 40
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=57.60 E-value=31 Score=28.52 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCcchhhhh-hhhhHHHHHHHHHHHHHHH
Q 023208 11 LNFFTFLLSIPIIGGGIWLSSRANNTDCLKF-LQWPLIVIGVSIMVVSLAG 60 (285)
Q Consensus 11 ~N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~-~~~~li~~G~~i~iis~lG 60 (285)
.|++..++..+++++|+|++..++ +.+. +...++.-|+.+++++.=|
T Consensus 3 ~~l~~~i~~gvL~~~G~Ylll~rn---Lir~iiGl~il~~~vnLlii~~G~ 50 (163)
T PRK07946 3 ANLGLLVAIGVLTSAGVYLLLERS---LTRMLLGLLLIGNGVNLLILTAGG 50 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 477888888999999999998553 2233 2233677777666666543
No 41
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=57.10 E-value=31 Score=23.51 Aligned_cols=43 Identities=19% Similarity=0.382 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 023208 15 TFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLAGFAGAC 65 (285)
Q Consensus 15 f~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~lGc~Ga~ 65 (285)
-.++|+++++.|+....... ...+.++|+..++.++.|+|...
T Consensus 13 R~~~G~~l~~~~~~~~~~~~--------~~~~~~~g~~ll~~g~~g~Cp~~ 55 (66)
T PF11127_consen 13 RIIIGIVLLALGLLGLFGSW--------GWLLGFVGAMLLVTGITGFCPLY 55 (66)
T ss_pred HHHHHHHHHHHHHHhcccch--------HHHHHHHHHHHHHHHHHCcCHhH
Confidence 35667777666666553321 23377888888888888887654
No 42
>PRK10209 acid-resistance membrane protein; Provisional
Probab=56.51 E-value=84 Score=26.43 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 023208 14 FTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLAGFAGACYR 67 (285)
Q Consensus 14 lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~lGc~Ga~~e 67 (285)
.+.+.|++++.+|+..+.++... .....+..|+.+++.|+....++.+.
T Consensus 23 ~~li~Gil~ivlGi~~l~~P~~~-----~~~~~~~~g~~ll~~Gi~~l~~~~~~ 71 (190)
T PRK10209 23 AIQIIAVLLFIGGLLCLSFPFVS-----GDALSTVVGILLICSGIALIVGLFAN 71 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46789999999999999988521 11125678888888888887776653
No 43
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=56.18 E-value=8.2 Score=36.78 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023208 51 VSIMVVSLAGFAGACYRNTHLMRFYLFVMFFII 83 (285)
Q Consensus 51 ~~i~iis~lGc~Ga~~es~~lL~~Y~~ll~vl~ 83 (285)
++.+++.+++++|.+|+|||++..+.++=++.+
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~gll~l 226 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVLGLLAL 226 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeccHHHH
Confidence 566788889999999999999987666544433
No 44
>KOG4054 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.15 E-value=1.2e+02 Score=25.28 Aligned_cols=79 Identities=11% Similarity=0.178 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 023208 8 IGLLNFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLAGFAGACYRNTHLMRFYLFVMFFIIAALI 87 (285)
Q Consensus 8 L~~~N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ll~vl~i~ei 87 (285)
++++..++|+++++=+.+|---....+ +...-+.+.-.. +.-++-+++|..+.-|++...|..|.+-+.+..+.-.
T Consensus 40 lifvh~lI~v~mlak~~l~hl~~~k~d--~v~~py~wey~~--~~SllpslLgllsf~rnkv~~L~l~m~a~~lf~i~p~ 115 (183)
T KOG4054|consen 40 LIFVHALIWVLMLAKMSLGHLRLLKHD--QVPMPYQWEYVW--ALSLLPSLLGLLSFRRNKVSYLVLYMIAMGLFMIFPL 115 (183)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcc--cCCCchhHHHHH--HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 567888899998888775544433332 111111111111 2235678888888889999999999998888886665
Q ss_pred HHH
Q 023208 88 GFI 90 (285)
Q Consensus 88 ~~~ 90 (285)
..+
T Consensus 116 ~~~ 118 (183)
T KOG4054|consen 116 VYG 118 (183)
T ss_pred HHh
Confidence 544
No 45
>PF14967 FAM70: FAM70 protein
Probab=54.64 E-value=16 Score=33.00 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHh-ccch-hHHHHHHHH----HHHHHH
Q 023208 12 NFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLAGFAGACY-RNTH-LMRFYLFVM----FFIIAA 85 (285)
Q Consensus 12 N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~lGc~Ga~~-es~~-lL~~Y~~ll----~vl~i~ 85 (285)
-+.++++++.++.+|+..-...++.....++ | |+++-+=||+|.+|+.. |||. ||..-++++ +..|..
T Consensus 31 ~~~lL~vS~~iltvGLaatTRTeNVtVgGYy--P----GIILgFGSFLGIiGi~LvENrRqmLvAaIVFiSfGvVaAFcC 104 (327)
T PF14967_consen 31 VVSLLVVSLLILTVGLAATTRTENVTVGGYY--P----GIILGFGSFLGIIGIHLVENRRQMLVAAIVFISFGVVAAFCC 104 (327)
T ss_pred eHHHHHHHHHHHHhhhheeeeecceEecccc--c----ceEEeehhHHHHhhhhhhhcCceEEEEEEEEEecchHHHHHH
Confidence 3455677778888888877665532211222 2 33333457888889886 6654 444333333 334444
Q ss_pred HHHHHHhhhe
Q 023208 86 LIGFIIFAYA 95 (285)
Q Consensus 86 ei~~~i~~~~ 95 (285)
-++-|+++..
T Consensus 105 aIVDGVfaar 114 (327)
T PF14967_consen 105 AIVDGVFAAR 114 (327)
T ss_pred HHHHHHhhhh
Confidence 4555555544
No 46
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=53.24 E-value=81 Score=26.90 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcc---hhhh---hh--hhhHHHHHHHHHHHHHHHHHHHHhc
Q 023208 12 NFFTFLLSIPIIGGGIWLSSRANNT---DCLK---FL--QWPLIVIGVSIMVVSLAGFAGACYR 67 (285)
Q Consensus 12 N~lf~i~Gi~ll~~Gi~~~~~~~~~---~~~~---~~--~~~li~~G~~i~iis~lGc~Ga~~e 67 (285)
|+++.++|++.+++|+....+..-- |.++ .+ +..+.+-|..+++.++.|.+....|
T Consensus 2 ~~~~~v~g~~~~~~gl~G~~~~~yAllldye~g~~v~N~S~l~~vyG~~l~~~~~~~~~~~~~~ 65 (196)
T PF06770_consen 2 HIILFVVGSAAFVFGLMGIVDERYALLLDYENGSSVFNCSGLVFVYGPLLLLVTTWGVYKITSK 65 (196)
T ss_pred cchhHHHHHHHHHHHhhheecCceeeEEEecCCCccEeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455669999999999998876521 1221 11 2338899999999999988777753
No 47
>PF15050 SCIMP: SCIMP protein
Probab=52.00 E-value=24 Score=27.51 Aligned_cols=29 Identities=14% Similarity=0.388 Sum_probs=19.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 023208 227 ASLKKSWRKVSVINIVVLIILVIFYVIGCA 256 (285)
Q Consensus 227 ~~l~~~~~~v~~~~~~i~~iqii~~~~a~~ 256 (285)
+|..+|..++.++++ +.+--.+|+++-|.
T Consensus 2 ~WWr~nFWiiLAVaI-I~vS~~lglIlyCv 30 (133)
T PF15050_consen 2 SWWRDNFWIILAVAI-ILVSVVLGLILYCV 30 (133)
T ss_pred chHHhchHHHHHHHH-HHHHHHHHHHHHHH
Confidence 578889998888884 44555566655544
No 48
>PF06195 DUF996: Protein of unknown function (DUF996); InterPro: IPR010397 This is a family of uncharacterised bacterial and archaeal proteins.
Probab=50.05 E-value=1.3e+02 Score=24.04 Aligned_cols=20 Identities=10% Similarity=-0.065 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhhcccC
Q 023208 15 TFLLSIPIIGGGIWLSSRAN 34 (285)
Q Consensus 15 f~i~Gi~ll~~Gi~~~~~~~ 34 (285)
+.+.|.+++-+|..-.++.-
T Consensus 2 l~ivG~IL~Lial~~is~~~ 21 (139)
T PF06195_consen 2 LSIVGLILLLIALKEISDAY 21 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999998864
No 49
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=44.19 E-value=18 Score=24.63 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q 023208 46 LIVIGVSIMVVSLAG 60 (285)
Q Consensus 46 li~~G~~i~iis~lG 60 (285)
+++.|++..++++.+
T Consensus 44 ~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 44 YLIGGAVAVIVGLFL 58 (59)
T ss_pred HHHhHHHHHHHHHhh
Confidence 788888888888764
No 50
>TIGR00941 2a6301s03 Multicomponent Na+:H+ antiporter, MnhC subunit.
Probab=43.28 E-value=75 Score=24.22 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHH
Q 023208 12 NFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLA 59 (285)
Q Consensus 12 N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~l 59 (285)
|.++.+...++++.|+|+...++.. ...+...++..|+.+++++.-
T Consensus 2 ~~~~~~~~~~L~~~G~Y~il~~nli--r~iigl~i~~~~vnL~~v~~g 47 (104)
T TIGR00941 2 ESIFALIIGILTASGVYLLLSRSVV--RVVLGLALLGYAVNLFILTMG 47 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 5667778888889999988754321 122222355566555555543
No 51
>PF15345 TMEM51: Transmembrane protein 51
Probab=43.03 E-value=28 Score=30.36 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 023208 46 LIVIGVSIMVVSLAGF 61 (285)
Q Consensus 46 li~~G~~i~iis~lGc 61 (285)
|+++|++++++++|=.
T Consensus 64 LVG~Gv~LLLLSICL~ 79 (233)
T PF15345_consen 64 LVGSGVALLLLSICLS 79 (233)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999998643
No 52
>PRK10209 acid-resistance membrane protein; Provisional
Probab=43.01 E-value=1.4e+02 Score=25.13 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 023208 46 LIVIGVSIMVVSLAGFAGACYRNT 69 (285)
Q Consensus 46 li~~G~~i~iis~lGc~Ga~~es~ 69 (285)
.+.+|+..++.|+.....|.+.++
T Consensus 108 ~~l~g~~~iv~Gi~~i~~a~~~~~ 131 (190)
T PRK10209 108 AAFIAGLFCVGGIIRLMSGYKQRK 131 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc
Confidence 466788888888888888876543
No 53
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=42.59 E-value=1.7e+02 Score=23.22 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 023208 10 LLNFFTFLLSIPIIGGGIWLSSRA 33 (285)
Q Consensus 10 ~~N~lf~i~Gi~ll~~Gi~~~~~~ 33 (285)
.++.++..+|.++++.|+......
T Consensus 31 ~~~~~l~~lGall~~~gii~fvA~ 54 (145)
T PF09925_consen 31 WLARILLYLGALLLGLGIILFVAA 54 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888777655
No 54
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=42.36 E-value=1.8e+02 Score=23.51 Aligned_cols=32 Identities=13% Similarity=-0.001 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 023208 3 NSNHLIGLLNFFTFLLSIPIIGGGIWLSSRAN 34 (285)
Q Consensus 3 ~~K~~L~~~N~lf~i~Gi~ll~~Gi~~~~~~~ 34 (285)
..+-++-++-.+++++|..++.+|...+....
T Consensus 3 ~~~~~~~il~~ill~lG~~f~ligaIGllRfP 34 (145)
T PRK12586 3 ITKEIFSLIAAIMILLGSIIALISAIGIVKFQ 34 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44556667778889999999999988888764
No 55
>COG1971 Predicted membrane protein [Function unknown]
Probab=41.13 E-value=1.8e+02 Score=24.64 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHhhhcccCcch----h----hh---hh-----------------------h----hhHHHHHHHHHH
Q 023208 14 FTFLLSIPIIGGGIWLSSRANNTD----C----LK---FL-----------------------Q----WPLIVIGVSIMV 55 (285)
Q Consensus 14 lf~i~Gi~ll~~Gi~~~~~~~~~~----~----~~---~~-----------------------~----~~li~~G~~i~i 55 (285)
-=|+.+++++.+|+|+..+.-..+ . .+ +. . .+.+.+|.+.++
T Consensus 69 ~~wigf~lL~~lG~~mI~e~f~~~~~~~~~~~~~~~~~~~~~~~laiatSidal~vG~~~a~lgv~i~~~av~iG~~T~i 148 (190)
T COG1971 69 AHWIGFVLLIILGLKMIIEGFKNEEDEFVDPAEKHDLNFKELILLAIATSIDALAVGVGLAFLGVNILLAAVAIGLITLI 148 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhcchhcccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhcchHHHHHHHHHHHHHH
Confidence 347899999999999998642111 0 00 10 0 127888999999
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Q 023208 56 VSLAGFAGACYRNTHLMRFYLFVMFFIIAALIGFII 91 (285)
Q Consensus 56 is~lGc~Ga~~es~~lL~~Y~~ll~vl~i~ei~~~i 91 (285)
++.+|..=. +.-..++.-|.=++.-++++-+..-+
T Consensus 149 l~~~G~~IG-~~~g~~~g~~ae~lgGiiLI~~G~~i 183 (190)
T COG1971 149 LSALGAIIG-RKLGKFLGKYAEILGGIILIGIGVKI 183 (190)
T ss_pred HHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999987744 55555777787777777666655443
No 56
>PF15471 TMEM171: Transmembrane protein family 171
Probab=41.03 E-value=28 Score=31.11 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 023208 8 IGLLNFFTFLLSIPIIGGGIWLSS 31 (285)
Q Consensus 8 L~~~N~lf~i~Gi~ll~~Gi~~~~ 31 (285)
+.+|-++|+..|+++-++|+|+=-
T Consensus 111 ~LIFGFLFLTSGmLISvLGiWVPG 134 (319)
T PF15471_consen 111 FLIFGFLFLTSGMLISVLGIWVPG 134 (319)
T ss_pred HHHHHHHHHhhhhhhhhheeeecC
Confidence 457889999999999999999853
No 57
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=38.27 E-value=1.7e+02 Score=22.05 Aligned_cols=77 Identities=13% Similarity=0.194 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhhcccCcchhhhhh-hhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH--H
Q 023208 15 TFLLSIPIIGGGIWLSSRANNTDCLKFL-QWPLIVIGVSIMVVSLAGFAGACYRNTHLMRFYLFVMFFIIAALIGFI--I 91 (285)
Q Consensus 15 f~i~Gi~ll~~Gi~~~~~~~~~~~~~~~-~~~li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ll~vl~i~ei~~~--i 91 (285)
+.+++.+++++|.+...... +....+ +.-++.-++-+-++++--..|-... ..|.++.+.+-.+|.+.| +
T Consensus 7 ~l~laa~LF~IGl~Gv~~rr--N~i~~LmSiElmlNAvnl~~Va~~~y~~~~~g-----QvfaifvitvAAaE~aVGLai 79 (100)
T COG0713 7 YLILAALLFTIGLYGLLTRR--NLIVMLMSIELMLNAVNLNFVAFSSYLGDLDG-----QVFAIFVITVAAAEAAVGLAI 79 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899998887643 211222 2225555555555665555555333 356666777778887665 4
Q ss_pred hhheecc
Q 023208 92 FAYAVTD 98 (285)
Q Consensus 92 ~~~~~~~ 98 (285)
+...||.
T Consensus 80 lv~~yR~ 86 (100)
T COG0713 80 LVALYRR 86 (100)
T ss_pred HHHHHHc
Confidence 4444554
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=37.61 E-value=1.2e+02 Score=25.19 Aligned_cols=16 Identities=25% Similarity=0.708 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 023208 46 LIVIGVSIMVVSLAGF 61 (285)
Q Consensus 46 li~~G~~i~iis~lGc 61 (285)
++++|+++++.|+.+.
T Consensus 11 ~iilgilli~~gI~~L 26 (191)
T PF04156_consen 11 LIILGILLIASGIAAL 26 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666555555553
No 59
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=37.50 E-value=1.4e+02 Score=23.72 Aligned_cols=29 Identities=21% Similarity=0.634 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhccchhHHH
Q 023208 46 LIVIGVSIMVVSLA-GFAGACYRNTHLMRF 74 (285)
Q Consensus 46 li~~G~~i~iis~l-Gc~Ga~~es~~lL~~ 74 (285)
+..+|.++.+++++ +.++.+++++.+...
T Consensus 74 ~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (172)
T PF13903_consen 74 FLILGLLLLLFAFVFALIGFCKRSYTLYLF 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 66667777777666 777888877755444
No 60
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=37.05 E-value=97 Score=24.07 Aligned_cols=46 Identities=11% Similarity=0.236 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHH
Q 023208 12 NFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLA 59 (285)
Q Consensus 12 N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~l 59 (285)
|.+..+...+++++|+|+...++.. .......++.-|+.++++++-
T Consensus 2 ~~~~~~~~~~Lf~iG~y~il~rnli--~~ligl~im~~avnL~~v~~g 47 (117)
T PRK12659 2 EFLLAIVVGGLYAAGIYMMLRRSIV--KLVIGLILLGNAANLLIFTVG 47 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888644311 111222255555555555544
No 61
>PF15471 TMEM171: Transmembrane protein family 171
Probab=36.90 E-value=37 Score=30.40 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhh--hhh---HHHHHHHHHH
Q 023208 6 HLIGLLNFFTFLLSIPIIGGGIWLSSRANNTDCLKFL--QWP---LIVIGVSIMV 55 (285)
Q Consensus 6 ~~L~~~N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~--~~~---li~~G~~i~i 55 (285)
++|++|-.+++..|++|-++|.+.-......+....+ ..| .+++|++++.
T Consensus 22 FFLfvFGavllCvG~lLsIfgfqaC~ye~l~dCs~vLKi~GP~cAvvGLg~ViLA 76 (319)
T PF15471_consen 22 FFLFVFGAVLLCVGVLLSIFGFQACQYETLSDCSMVLKIAGPSCAVVGLGAVILA 76 (319)
T ss_pred ehhHHHhHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhccchhhhhcchhheeh
Confidence 4667777777788888877777766544333332222 233 4555555544
No 62
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=36.73 E-value=97 Score=23.97 Aligned_cols=46 Identities=7% Similarity=0.164 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHH
Q 023208 12 NFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLA 59 (285)
Q Consensus 12 N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~l 59 (285)
+.+..+...+++++|+|+...++.. ...+...++..|+.+++++.-
T Consensus 2 ~~~~~~~~~~L~~~G~ylll~rnli--k~iigl~i~~~~v~L~~v~~g 47 (113)
T PRK08600 2 EILMIIVIGILTAIAVYLILSKSLL--RIIIGTTLLSHGANLLLLTMG 47 (113)
T ss_pred chHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777788999988755322 122222366666666555544
No 63
>PHA03283 envelope glycoprotein E; Provisional
Probab=35.91 E-value=28 Score=34.04 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=29.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH-HHHHhhhhhcccccCCC--CCcccccc
Q 023208 227 ASLKKSWRKVSVINIVVLIILVIF-YVIGCAAFRNNRRIDND--EPYGEARM 275 (285)
Q Consensus 227 ~~l~~~~~~v~~~~~~i~~iqii~-~~~a~~l~~~~~~~~~~--~~~~~~~~ 275 (285)
.|....+..+++++-+++++ +++ .+.+|..+|+.+++-|| +|+|+.-+
T Consensus 394 ~~~~~~l~~~~~~~~~~~~~-~~~l~vw~c~~~r~~~~~~y~ilnpf~~vyt 444 (542)
T PHA03283 394 AWTRHYLAFLLAIICTCAAL-LVALVVWGCILYRRSNRKPYEVLNPFETVYT 444 (542)
T ss_pred ccccccchhHHHHHHHHHHH-HHHHhhhheeeehhhcCCcccccCCCcccee
Confidence 44444454455555444444 444 45666676887777777 89988754
No 64
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=35.43 E-value=2.1e+02 Score=22.07 Aligned_cols=49 Identities=12% Similarity=0.279 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcchhhhhhh-hhHHHHHHHHHHHHHHHHHH
Q 023208 12 NFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQ-WPLIVIGVSIMVVSLAGFAG 63 (285)
Q Consensus 12 N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~-~~li~~G~~i~iis~lGc~G 63 (285)
|++..+...+++++|+|+...++ ..+... ..++.-|+.++++++-+..+
T Consensus 2 ~~~~~~~~~~Lf~iGiy~il~rn---li~~ligl~im~~avnL~~v~~g~~~~ 51 (114)
T PRK12660 2 NLILLLVIGFLVFIGTYMILSIN---LIRIVIGISIYTHAGNLIIMSMGGYGS 51 (114)
T ss_pred chHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66788888999999999985332 223222 22677777776666655543
No 65
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=33.93 E-value=2.2e+02 Score=21.90 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhhcccCcchhhhh-hhhhHHHHHHHHHHHHHHHHHH
Q 023208 14 FTFLLSIPIIGGGIWLSSRANNTDCLKF-LQWPLIVIGVSIMVVSLAGFAG 63 (285)
Q Consensus 14 lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~-~~~~li~~G~~i~iis~lGc~G 63 (285)
.+.+.+++++++|+|....+. +..+. ...-++.-|+.++++++-...|
T Consensus 4 ~~~~~~~~Lf~iGlygil~rr--nli~~liglei~~~av~L~lv~~g~~~~ 52 (114)
T PRK08389 4 AYYFGAIALVLIGLYGVLVKK--NLLKIIIGLDIMETGVNLLLISIGYVSG 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 467778889999999776432 22232 2233777787777777755443
No 66
>PRK05715 NADH:ubiquinone oxidoreductase subunit K; Validated
Probab=33.49 E-value=2e+02 Score=21.29 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhhhcccCcchhhhhh-hhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 023208 15 TFLLSIPIIGGGIWLSSRANNTDCLKFL-QWPLIVIGVSIMVVSLAGFAGACYRNTHLMRFYLFVMFFIIAALIGFIIFA 93 (285)
Q Consensus 15 f~i~Gi~ll~~Gi~~~~~~~~~~~~~~~-~~~li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ll~vl~i~ei~~~i~~ 93 (285)
..+++.+++.+|+|....+. +....+ ..-++..|+.+++++..... +...=..+.+..+++-++|.+.+...
T Consensus 7 ~~~~~~~lf~iGl~~~~~~~--~li~~Ll~lE~m~~~v~l~~~~~~~~~-----~~~~~~~l~l~~ivi~~~E~algLsl 79 (100)
T PRK05715 7 YLILAAILFCIGLVGLLLRR--NAIVVLMSIELMLNAVNLNFVAFSSYL-----GDLDGQVFAFFVITVAAAEAAIGLAI 79 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778888999876532 322222 22266667666666654443 11222345555666667777766443
Q ss_pred h
Q 023208 94 Y 94 (285)
Q Consensus 94 ~ 94 (285)
.
T Consensus 80 l 80 (100)
T PRK05715 80 L 80 (100)
T ss_pred H
Confidence 3
No 67
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=32.69 E-value=75 Score=30.97 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=8.3
Q ss_pred CCCCCCCCCcc
Q 023208 174 CCKPPADCGFV 184 (285)
Q Consensus 174 CC~~~~~C~~~ 184 (285)
|||..+.|+.+
T Consensus 118 CcCs~~~CN~n 128 (534)
T KOG3653|consen 118 CCCSTDFCNAN 128 (534)
T ss_pred EecCCCcccCC
Confidence 88887888754
No 68
>PRK09094 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=32.38 E-value=1.3e+02 Score=23.41 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 023208 14 FTFLLSIPIIGGGIWLSSRA 33 (285)
Q Consensus 14 lf~i~Gi~ll~~Gi~~~~~~ 33 (285)
+..+...+++++|+|+...+
T Consensus 4 ~~~~~~~~L~~~G~Y~il~r 23 (114)
T PRK09094 4 VLALAIGVLTASGVWLLLRP 23 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 44444555556666666643
No 69
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=32.29 E-value=57 Score=29.47 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccCC
Q 023208 239 INIVVLIILVIFYVIGCAAFRNNRRIDN 266 (285)
Q Consensus 239 ~~~~i~~iqii~~~~a~~l~~~~~~~~~ 266 (285)
.++++.++-++.+++-.+|+||.|+.+.
T Consensus 264 aalvllil~vvliiLYiWlyrrRK~swk 291 (295)
T TIGR01478 264 AALVLIILTVVLIILYIWLYRRRKKSWK 291 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3444444445556777789999988874
No 70
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=31.45 E-value=1e+02 Score=24.27 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHH
Q 023208 12 NFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSL 58 (285)
Q Consensus 12 N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~ 58 (285)
++++.+...+++++|+|+...++.. ...+...++.-|+.+++++.
T Consensus 2 ~~~~~~~~g~L~~~G~Ylil~rnli--r~iigl~il~~avnLlii~~ 46 (125)
T PRK12658 2 EALFAILVGVFFAAAIYLMLSRHII--RILFGLALLGNAVNLLIFTA 46 (125)
T ss_pred chHHHHHHHHHHHHHHHHHhhchHH--HHHHHHHHHHHHHHHhhhhh
Confidence 4566677777788888888754321 11122225555555554443
No 71
>PRK10263 DNA translocase FtsK; Provisional
Probab=31.31 E-value=4.5e+02 Score=29.21 Aligned_cols=9 Identities=44% Similarity=0.992 Sum_probs=4.2
Q ss_pred HHHHHhhhc
Q 023208 23 IGGGIWLSS 31 (285)
Q Consensus 23 l~~Gi~~~~ 31 (285)
+.+++|.++
T Consensus 90 L~~~a~~l~ 98 (1355)
T PRK10263 90 IVGGCWFAW 98 (1355)
T ss_pred HHHHHHHHH
Confidence 344555544
No 72
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=31.14 E-value=26 Score=27.31 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHH
Q 023208 13 FFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSL 58 (285)
Q Consensus 13 ~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~ 58 (285)
++++.+|++++++|..+....-... ..--..++++.|+++++=|+
T Consensus 55 vvL~~fg~Lli~lg~fl~~~~~~ag-~~~~gv~f~V~G~L~FiPGf 99 (124)
T KOG4753|consen 55 VVLLVFGLLLIGLGFFLAGGRVEAG-DRSQGVFFFVLGILLFIPGF 99 (124)
T ss_pred HHHHHHHHHHHHHHHHheecceeeC-CCcceEEEehhhhHhcccch
Confidence 4455556666666665554331100 01112236677776665443
No 73
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=29.67 E-value=2.3e+02 Score=25.31 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023208 47 IVIGVSIMVVSLAGFAGA 64 (285)
Q Consensus 47 i~~G~~i~iis~lGc~Ga 64 (285)
++++++.|+.+++|.+|.
T Consensus 28 ~~~~~~~F~~~ml~~~G~ 45 (284)
T PF12805_consen 28 LVLALLTFFFGMLGVYGP 45 (284)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333444444444444443
No 74
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=28.77 E-value=1.5e+02 Score=24.71 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 023208 44 WPLIVIGVSIMVVSLAGFA 62 (285)
Q Consensus 44 ~~li~~G~~i~iis~lGc~ 62 (285)
.|+++.|+.++..+.+|++
T Consensus 75 DP~~~~g~~t~a~g~lG~L 93 (173)
T PF08566_consen 75 DPFMVYGLATLACGALGWL 93 (173)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999864
No 75
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=27.92 E-value=20 Score=32.56 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 023208 232 SWRKVSVINIVVLIILVIFYVIGCAAFRNNRRI 264 (285)
Q Consensus 232 ~~~~v~~~~~~i~~iqii~~~~a~~l~~~~~~~ 264 (285)
++..+ ..+++++++.+++.+++|+++|+.|..
T Consensus 145 yL~T~-IpaVVI~~iLLIA~iIa~icyrrkR~G 176 (290)
T PF05454_consen 145 YLHTF-IPAVVIAAILLIAGIIACICYRRKRKG 176 (290)
T ss_dssp ---------------------------------
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 34444 366677777777888888888855443
No 76
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=27.91 E-value=93 Score=18.72 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 023208 46 LIVIGVSIMVVSLAGFAGACYR 67 (285)
Q Consensus 46 li~~G~~i~iis~lGc~Ga~~e 67 (285)
-+++|.+++++++-|.....++
T Consensus 12 Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 12 GLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 5778888888888888777653
No 77
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=27.68 E-value=2.1e+02 Score=19.64 Aligned_cols=18 Identities=17% Similarity=0.096 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023208 10 LLNFFTFLLSIPIIGGGI 27 (285)
Q Consensus 10 ~~N~lf~i~Gi~ll~~Gi 27 (285)
.+..++.++|++.+.+..
T Consensus 5 ~l~~~~~llg~~~l~i~~ 22 (63)
T PF13127_consen 5 ILSLILLLLGVVCLFIFN 22 (63)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555566655544433
No 78
>PTZ00370 STEVOR; Provisional
Probab=27.45 E-value=70 Score=28.96 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCC
Q 023208 238 VINIVVLIILVIFYVIGCAAFRNNRRIDN 266 (285)
Q Consensus 238 ~~~~~i~~iqii~~~~a~~l~~~~~~~~~ 266 (285)
+.++++.++-++.+++-.+|+||.|+.+.
T Consensus 259 iaalvllil~vvliilYiwlyrrRK~swk 287 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRRRKNSWK 287 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 33444444445556777789999988863
No 79
>KOG4556 consensus Predicted membrane protein [Function unknown]
Probab=27.41 E-value=2.5e+02 Score=23.57 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 023208 43 QWPLIVIGVSIMVVSLAGFAGACYRNTHLMRFYLFVMFFIIAALIG 88 (285)
Q Consensus 43 ~~~li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ll~vl~i~ei~ 88 (285)
+++-|+.-.+=+++-++|.+|+....+.++.+|..-+.+-+-.-+-
T Consensus 30 qWapilanFvhIiivIlGLFGtiQyR~ryl~~y~~w~alwVtwNvf 75 (205)
T KOG4556|consen 30 QWAPILANFVHIIIVILGLFGTIQYRRRYLYTYASWLALWVTWNVF 75 (205)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHhHH
Confidence 3456677777778888999999999999999999887766555443
No 80
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=27.27 E-value=56 Score=28.75 Aligned_cols=28 Identities=11% Similarity=0.407 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccchh
Q 023208 44 WPLIVIGVSIMVVSLAGFAGACYRNTHL 71 (285)
Q Consensus 44 ~~li~~G~~i~iis~lGc~Ga~~es~~l 71 (285)
+.++++|.++++.++++++-.-|-++.+
T Consensus 227 wi~~vlG~ll~lr~~i~YikVrrm~~~~ 254 (262)
T KOG4812|consen 227 WIFLVLGLLLFLRGFINYIKVRRMEEKY 254 (262)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhHHHHH
Confidence 3499999999999999998877655443
No 81
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=26.89 E-value=1.4e+02 Score=25.76 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023208 8 IGLLNFFTFLLSIPIIGGGI 27 (285)
Q Consensus 8 L~~~N~lf~i~Gi~ll~~Gi 27 (285)
+.++.+++.++|+++..+|+
T Consensus 3 ~~~~s~vl~lig~~L~~~al 22 (211)
T PF07062_consen 3 LLVFSFVLILIGLILTFIAL 22 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888877775
No 82
>PRK11246 hypothetical protein; Provisional
Probab=26.69 E-value=86 Score=27.22 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhhcccccCCCCCccccc
Q 023208 248 VIFYVIGCAAFRNNRRIDNDEPYGEAR 274 (285)
Q Consensus 248 ii~~~~a~~l~~~~~~~~~~~~~~~~~ 274 (285)
++|++++..+.+..|.++.++||.-..
T Consensus 174 ~iG~lL~~~l~~~~~~~~~~~~~~l~~ 200 (218)
T PRK11246 174 AIGIVLTRTLLQGKRTRWQQSPFLLTA 200 (218)
T ss_pred HHHHHHHHHHhcccccccccCceeecc
Confidence 568889999999999999999997533
No 83
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=25.84 E-value=93 Score=24.48 Aligned_cols=18 Identities=28% Similarity=0.491 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023208 7 LIGLLNFFTFLLSIPIIG 24 (285)
Q Consensus 7 ~L~~~N~lf~i~Gi~ll~ 24 (285)
.++.+.++.+++|++|++
T Consensus 38 siL~Ls~vvlvi~~~LLg 55 (125)
T PF15048_consen 38 SILALSFVVLVISFFLLG 55 (125)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 84
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=25.18 E-value=69 Score=22.35 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=15.2
Q ss_pred HHHHHHHHH---HHHHHHHHHHHh
Q 023208 8 IGLLNFFTF---LLSIPIIGGGIW 28 (285)
Q Consensus 8 L~~~N~lf~---i~Gi~ll~~Gi~ 28 (285)
+..+|++++ +.|+.++++|--
T Consensus 1 l~~ln~lwl~~~l~~l~v~tigPA 24 (77)
T PF04854_consen 1 LVVLNLLWLLFTLAGLPVFTIGPA 24 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888 888887777643
No 85
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.08 E-value=1.6e+02 Score=21.74 Aligned_cols=19 Identities=26% Similarity=0.502 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhhhcccc
Q 023208 245 IILVIFYVIGCAAFRNNRR 263 (285)
Q Consensus 245 ~iqii~~~~a~~l~~~~~~ 263 (285)
++-++.+.+.||+-|+..|
T Consensus 44 Fil~VilwfvCC~kRkrsR 62 (94)
T PF05393_consen 44 FILLVILWFVCCKKRKRSR 62 (94)
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 3445556788888776533
No 86
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=24.76 E-value=70 Score=17.54 Aligned_cols=13 Identities=15% Similarity=0.140 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 023208 78 VMFFIIAALIGFI 90 (285)
Q Consensus 78 ll~vl~i~ei~~~ 90 (285)
+++++|++.++.+
T Consensus 8 livVLFILLiIvG 20 (24)
T PF09680_consen 8 LIVVLFILLIIVG 20 (24)
T ss_pred hHHHHHHHHHHhc
Confidence 4455555555444
No 87
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=24.70 E-value=87 Score=17.99 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 023208 14 FTFLLSIPIIGGGIWLSS 31 (285)
Q Consensus 14 lf~i~Gi~ll~~Gi~~~~ 31 (285)
.+.++|+++++.+.++..
T Consensus 12 ~~~~~G~~l~~~~~~~~~ 29 (34)
T TIGR01167 12 LLLLLGLLLLGLGGLLLR 29 (34)
T ss_pred HHHHHHHHHHHHHHHHhe
Confidence 445555555555555544
No 88
>PRK01741 cell division protein ZipA; Provisional
Probab=24.47 E-value=42 Score=30.98 Aligned_cols=10 Identities=10% Similarity=0.019 Sum_probs=4.8
Q ss_pred HHHHHHHhcc
Q 023208 59 AGFAGACYRN 68 (285)
Q Consensus 59 lGc~Ga~~es 68 (285)
.|.+.+-||+
T Consensus 21 hgiWsnRrEK 30 (332)
T PRK01741 21 HGIWSNRREK 30 (332)
T ss_pred hhhhhhhhHH
Confidence 3555555543
No 89
>CHL00015 ndhE NADH dehydrogenase subunit 4L
Probab=24.42 E-value=3e+02 Score=20.46 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhhcccCcchhhhh-hhhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhh
Q 023208 16 FLLSIPIIGGGIWLSSRANNTDCLKF-LQWPLIVIGVSIMVVSLAGFAGACYRNTHLMRFYLFVMFFIIAALIGFIIFAY 94 (285)
Q Consensus 16 ~i~Gi~ll~~Gi~~~~~~~~~~~~~~-~~~~li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ll~vl~i~ei~~~i~~~ 94 (285)
.+++.+++..|++...... +.... ...-++..|+.++++++....+-.- .-=..+..+.+++-++|.+.+....
T Consensus 7 ~~~~~~lf~iGl~g~l~~r--nll~~LlslE~m~~~v~l~~~~~~~~~~~~~---~~~~~l~l~~ivia~~E~algLsll 81 (101)
T CHL00015 7 LILSAYLFSIGIYGLITSR--NMVRALMCLELILNAVNINFVTFSDFFDSRQ---LKGDIFSIFVIAIAAAEAAIGLAIV 81 (101)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc---cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888887643 12222 2233777777777777666543210 0013455555666677776664433
No 90
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=24.36 E-value=2.3e+02 Score=22.29 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 023208 11 LNFFTFLLSIPIIGGGIWLSSRA 33 (285)
Q Consensus 11 ~N~lf~i~Gi~ll~~Gi~~~~~~ 33 (285)
+-++-++.|+++++.|++-+...
T Consensus 6 ~r~~~~~~~~~~i~~gi~~l~~~ 28 (136)
T PF08507_consen 6 FRILNIIAGILLILAGILSLFNS 28 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666777777777777654
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.97 E-value=1e+02 Score=24.20 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccc
Q 023208 237 SVINIVVLIILVIFYVIGCAAFRNNRRI 264 (285)
Q Consensus 237 ~~~~~~i~~iqii~~~~a~~l~~~~~~~ 264 (285)
.++|...+++-++ +++++++.|++|+.
T Consensus 69 Ii~gv~aGvIg~I-lli~y~irR~~Kk~ 95 (122)
T PF01102_consen 69 IIFGVMAGVIGII-LLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHS---
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHhccC
Confidence 3334433343333 24444454444443
No 92
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=23.88 E-value=75 Score=22.10 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 023208 12 NFFTFLLSIPIIGGGIWLSSR 32 (285)
Q Consensus 12 N~lf~i~Gi~ll~~Gi~~~~~ 32 (285)
.++++++|+.++++|+|....
T Consensus 47 ~~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999998764
No 93
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=23.79 E-value=2.1e+02 Score=18.45 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccccccccc
Q 023208 236 VSVINIVVLIILVIFYVIGCAAFRNNRRIDNDEPYGEARMTKS 278 (285)
Q Consensus 236 v~~~~~~i~~iqii~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 278 (285)
..+.++.++++-.....+-...++++--+ +.+|-.|+|...|
T Consensus 10 ~~~F~~lIC~Fl~~~~~F~~F~~Kqilfr-~~~~snear~n~s 51 (54)
T PF06716_consen 10 LLAFGFLICLFLFCLVVFIWFVYKQILFR-NNPQSNEARFNHS 51 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCcchhhcccc
Confidence 44566666666666655555666665433 2345566665443
No 94
>PRK12661 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=23.39 E-value=1.7e+02 Score=23.63 Aligned_cols=11 Identities=18% Similarity=-0.140 Sum_probs=5.4
Q ss_pred HHHHHHHHhcc
Q 023208 58 LAGFAGACYRN 68 (285)
Q Consensus 58 ~lGc~Ga~~es 68 (285)
..|.++..|+|
T Consensus 15 ~iGiylllrrN 25 (140)
T PRK12661 15 GIGTFLILRRD 25 (140)
T ss_pred HHHHHHHHHhh
Confidence 34555555444
No 95
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=22.83 E-value=2.7e+02 Score=19.84 Aligned_cols=15 Identities=7% Similarity=0.397 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHh
Q 023208 14 FTFLLSIPIIGGGIW 28 (285)
Q Consensus 14 lf~i~Gi~ll~~Gi~ 28 (285)
+.+++|+++++.|+.
T Consensus 47 ~~~v~gl~llv~G~~ 61 (82)
T PF11239_consen 47 LLVVVGLALLVAGVV 61 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555444443
No 96
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=22.74 E-value=4.9e+02 Score=25.82 Aligned_cols=88 Identities=9% Similarity=-0.014 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHH-HHHHHHHHHHH
Q 023208 9 GLLNFFTFLLSIPIIGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLAGFAGACYRNTHLMRFYL-FVMFFIIAALI 87 (285)
Q Consensus 9 ~~~N~lf~i~Gi~ll~~Gi~~~~~~~~~~~~~~~~~~li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~-~ll~vl~i~ei 87 (285)
.+++++..+++.+.+.+-+++....- . +....|.+.+..+.++.++-.+.-.++..++-...++ +-++.+-+.-+
T Consensus 399 vfi~Li~tiI~P~ti~~iIylIv~~I-~---~s~~~piIsLiLLAiIyGL~aIl~iL~~r~wq~i~wmiiYll~~P~~n~ 474 (527)
T PF03142_consen 399 VFIDLIGTIILPATIVFIIYLIVVSI-F---SSDPVPIISLILLAIIYGLPAILFILRSRRWQYIGWMIIYLLALPFFNF 474 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeh-c---ccccccchHHHHHHHHHHHHhhhheecccHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555454433221 0 0011223333333333333333333442333333333 23333444556
Q ss_pred HHHHhhheeccCC
Q 023208 88 GFIIFAYAVTDKG 100 (285)
Q Consensus 88 ~~~i~~~~~~~~~ 100 (285)
++-+.++.+.|++
T Consensus 475 vLpiYSfwn~DDF 487 (527)
T PF03142_consen 475 VLPIYSFWNFDDF 487 (527)
T ss_pred HhhheeEEEeccc
Confidence 6666777777765
No 97
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.61 E-value=3.3e+02 Score=20.27 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc-----cchhHHHHHHHHHHHHHHHH
Q 023208 44 WPLIVIGVSIMVVSLAGFAGACYR-----NTHLMRFYLFVMFFIIAALI 87 (285)
Q Consensus 44 ~~li~~G~~i~iis~lGc~Ga~~e-----s~~lL~~Y~~ll~vl~i~ei 87 (285)
.++...+.+.++..+.|...|-++ .++++..|+..+.+...--+
T Consensus 43 ~~~~~la~~~l~~~~~a~~~ar~~~i~~Hr~wM~rsy~~~~~~~~~r~~ 91 (103)
T PF10067_consen 43 SGFHLLAVLWLITTFLAVRAARRGRIAAHRRWMIRSYALALGAVTLRLL 91 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888888999999875 47999999998887766544
No 98
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=22.34 E-value=63 Score=26.82 Aligned_cols=9 Identities=11% Similarity=0.065 Sum_probs=6.0
Q ss_pred CCCcCCCcc
Q 023208 142 SKVCPKMRR 150 (285)
Q Consensus 142 ~~~CCG~~~ 150 (285)
..-|||.-+
T Consensus 26 ~~~CCG~C~ 34 (179)
T PF13908_consen 26 FTFCCGTCS 34 (179)
T ss_pred cceecCCcc
Confidence 466788665
No 99
>COG3374 Predicted membrane protein [Function unknown]
Probab=22.32 E-value=2.1e+02 Score=24.36 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhhcccCcchh----hhhhhhhHHHHHHHHHHHHHHHHH
Q 023208 13 FFTFLLSIPIIGGGIWLSSRANNTDC----LKFLQWPLIVIGVSIMVVSLAGFA 62 (285)
Q Consensus 13 ~lf~i~Gi~ll~~Gi~~~~~~~~~~~----~~~~~~~li~~G~~i~iis~lGc~ 62 (285)
+.++++|+.+...+.|.+.+....+. .+-...|++++|.++++.|+.|-.
T Consensus 10 ~~L~~L~~~~~l~ay~~~~~~~~~~k~~~~~k~~~~p~~~lG~~~~itGl~g~~ 63 (197)
T COG3374 10 LMLFILGVTLFLLAYAVLKNFLGSRKNDGFNKSFAAPAAGLGIFILITGLWGEF 63 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchHHHHHHHHHHHHHHhhe
Confidence 44566777777777776655432221 222445699999999999888744
No 100
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=22.26 E-value=64 Score=25.45 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 023208 46 LIVIGVSIMVVSLAGF 61 (285)
Q Consensus 46 li~~G~~i~iis~lGc 61 (285)
++..|.++++.|.+-+
T Consensus 87 lLs~GLmlL~~~alcW 102 (129)
T PF15099_consen 87 LLSLGLMLLACSALCW 102 (129)
T ss_pred HHHHHHHHHHhhhhee
Confidence 5555555555554433
No 101
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=22.22 E-value=39 Score=33.91 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=29.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q 023208 231 KSWRKVSVINIVVLIILVIFYVIGCAAFRNNRRID 265 (285)
Q Consensus 231 ~~~~~v~~~~~~i~~iqii~~~~a~~l~~~~~~~~ 265 (285)
.|+++++++...++++-++.++++++|.|+.|.+-
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~eF 301 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYWKLCRKNKLEF 301 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHHHHhcccccCC
Confidence 56777788889999999999999999998877653
No 102
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=22.09 E-value=3.2e+02 Score=19.94 Aligned_cols=13 Identities=23% Similarity=0.779 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 023208 46 LIVIGVSIMVVSL 58 (285)
Q Consensus 46 li~~G~~i~iis~ 58 (285)
++.+|+++++.++
T Consensus 50 ~~~~~i~~li~~l 62 (97)
T PF12650_consen 50 MLIIGIILLIGGL 62 (97)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544444
No 103
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=21.65 E-value=1.2e+02 Score=26.89 Aligned_cols=30 Identities=10% Similarity=0.381 Sum_probs=24.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhheecc
Q 023208 69 THLMRFYLFVMFFIIAALIGFIIFAYAVTD 98 (285)
Q Consensus 69 ~~lL~~Y~~ll~vl~i~ei~~~i~~~~~~~ 98 (285)
|..|.+|..+|++++++-++..+|..-.-+
T Consensus 34 KrcLY~fvLlL~i~ivvNLalTiWIlkVm~ 63 (292)
T KOG3950|consen 34 KRCLYTFVLLLMILIVVNLALTIWILKVMN 63 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346788999999999999999988876443
No 104
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=21.27 E-value=3.6e+02 Score=21.16 Aligned_cols=9 Identities=44% Similarity=1.025 Sum_probs=5.7
Q ss_pred CCccccccc
Q 023208 268 EPYGEARMT 276 (285)
Q Consensus 268 ~~~~~~~~~ 276 (285)
+|+|.+|++
T Consensus 50 ~p~g~a~~~ 58 (123)
T COG0838 50 PPFGGARLR 58 (123)
T ss_pred CCCCccccc
Confidence 566666665
No 105
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.07 E-value=4e+02 Score=20.65 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 023208 46 LIVIGVSIMVVSLAGFAGACYRNTHLMRFYLFVM 79 (285)
Q Consensus 46 li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ll 79 (285)
++.+|.+++.+|++ .+.++.++.++.++=
T Consensus 18 lif~g~~vmy~gi~-----f~~~~~im~ifmllG 46 (114)
T PF11023_consen 18 LIFIGMIVMYIGIF-----FKASPIIMVIFMLLG 46 (114)
T ss_pred HHHHHHHHHhhhhh-----hcccHHHHHHHHHHH
Confidence 88888888887532 255555555544443
No 106
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=20.74 E-value=7.7e+02 Score=23.78 Aligned_cols=15 Identities=33% Similarity=0.182 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 023208 46 LIVIGVSIMVVSLAG 60 (285)
Q Consensus 46 li~~G~~i~iis~lG 60 (285)
+++..+.+.++++-.
T Consensus 356 liAa~a~i~Li~~Y~ 370 (430)
T PF06123_consen 356 LIAALACIGLISLYL 370 (430)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666543
No 107
>PHA00442 host recBCD nuclease inhibitor
Probab=20.68 E-value=23 Score=23.53 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=15.7
Q ss_pred chhhHHHhhhcccc---------CCCcCCCccc
Q 023208 128 DDSYWGKISSCIRD---------SKVCPKMRRV 151 (285)
Q Consensus 128 ~~~~~d~iQ~~~~~---------~~~CCG~~~~ 151 (285)
..++|+.+|.|++. -++-||+++|
T Consensus 11 tRd~wnd~q~yidsLek~~~~L~~Lea~GVDNW 43 (59)
T PHA00442 11 TRDAWNDMQGYIDSLEKDNEFLKALRACGVDNW 43 (59)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHcCCcch
Confidence 35677777766633 3667998883
No 108
>PRK10692 hypothetical protein; Provisional
Probab=20.61 E-value=2e+02 Score=21.13 Aligned_cols=55 Identities=15% Similarity=0.024 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHHHHHhhheeccCC
Q 023208 46 LIVIGVSIMVVSLAGFAGACY--RNTHLMRFYLFVMFFIIAALIGFIIFAYAVTDKG 100 (285)
Q Consensus 46 li~~G~~i~iis~lGc~Ga~~--es~~lL~~Y~~ll~vl~i~ei~~~i~~~~~~~~~ 100 (285)
++++|.++++.|+-=-+-+.- =+-.=..++..++.+.+-+.+-++..-..-++++
T Consensus 13 lMglGmv~Mv~gigysi~~~i~~L~Lp~~~~~gal~~IFiGAllWL~GArigGRE~V 69 (92)
T PRK10692 13 LMGLGLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGALLWLAGARVGGREQV 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchHHHHhhHHHHHHHHHHHHHhcccccCcchh
Confidence 555555555554432222111 1233344455555555555544443333334444
No 109
>PF01184 Grp1_Fun34_YaaH: GPR1/FUN34/yaaH family; InterPro: IPR000791 Several uncharacterised proteins are evolutionary related, including Yarrowia lipolytica (Candida lipolytica) glyxoxylate pathway regulator GPR1; yeast protein FUN34 and hypothetical proteins YCR10c and YDR384c; fission yeast hypothetical protein SpAC5D6.09c; Escherichia coli hypothetical protein yaaH; and Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) hypothetical protein Mth215. They are hydrophobic proteins that seem to contain six transmembrane regions and which could therefore be involved in transport. They have from 188 to 283 amino acids.; GO: 0016020 membrane
Probab=20.39 E-value=5.5e+02 Score=21.94 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCcc
Q 023208 10 LLNFFTFLLSIPIIGGGIWLSSRANNT 36 (285)
Q Consensus 10 ~~N~lf~i~Gi~ll~~Gi~~~~~~~~~ 36 (285)
++-..++..|++.+..|+|-....+.+
T Consensus 51 ~~~~~lf~GGl~Q~laGi~e~~~GNtf 77 (211)
T PF01184_consen 51 VVGLALFFGGLVQFLAGIWEFRRGNTF 77 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 345667888999999999999988765
No 110
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.36 E-value=1.1e+02 Score=17.13 Aligned_cols=13 Identities=8% Similarity=0.117 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 023208 78 VMFFIIAALIGFI 90 (285)
Q Consensus 78 ll~vl~i~ei~~~ 90 (285)
+++++|++.++.+
T Consensus 10 livVLFILLIIig 22 (26)
T TIGR01732 10 LIVVLFILLVIVG 22 (26)
T ss_pred HHHHHHHHHHHhh
Confidence 4445555554443
No 111
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=20.15 E-value=2.2e+02 Score=21.39 Aligned_cols=20 Identities=5% Similarity=-0.107 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 023208 14 FTFLLSIPIIGGGIWLSSRA 33 (285)
Q Consensus 14 lf~i~Gi~ll~~Gi~~~~~~ 33 (285)
++=++|+++++++...+.++
T Consensus 13 ilE~lG~~LLv~a~Lsin~~ 32 (96)
T PF07214_consen 13 ILEVLGMILLVLAYLSINDY 32 (96)
T ss_pred HHHHHHHHHHHHHHHHHccc
Confidence 45577888887776554443
Done!