Query 023208
Match_columns 285
No_of_seqs 129 out of 1243
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 18:11:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8q_A CD81 antigen, extracell 99.1 1.3E-12 4.3E-17 96.5 -5.4 59 128-232 31-89 (90)
2 2klu_A T-cell surface glycopro 32.8 81 0.0028 21.0 4.6 20 238-257 13-32 (70)
3 3rko_K NADH-quinone oxidoreduc 27.5 1.6E+02 0.0056 20.7 9.4 73 16-95 8-81 (100)
4 3rce_A Oligosaccharide transfe 26.7 3E+02 0.01 27.1 9.6 19 42-60 379-397 (724)
5 2nrg_A Intrinsic membrane prot 25.8 1.7E+02 0.0057 20.2 6.2 52 223-274 17-70 (82)
6 2jwa_A Receptor tyrosine-prote 25.2 1.2E+02 0.0041 18.4 4.2 24 237-260 15-38 (44)
7 2dw3_A Intrinsic membrane prot 20.8 2.1E+02 0.0071 19.5 6.9 52 222-273 15-68 (77)
8 4aq5_E Acetylcholine receptor 20.2 2.9E+02 0.0099 25.5 7.8 21 68-88 278-298 (488)
9 4aq5_C Acetylcholine receptor 18.3 3.5E+02 0.012 25.2 8.0 22 67-88 304-325 (522)
10 2gx1_A Neurotoxin MAGI-5; spid 13.6 71 0.0024 17.1 1.0 9 142-150 12-20 (29)
No 1
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=99.07 E-value=1.3e-12 Score=96.47 Aligned_cols=59 Identities=8% Similarity=0.141 Sum_probs=44.1
Q ss_pred chhhHHHhhhccccCCCcCCCcccCCCCCCchhhhhhcCCCCCCCCCCCCCCCCCcccccCcccCCCCCCCCCCCccccc
Q 023208 128 DDSYWGKISSCIRDSKVCPKMRRVINGAPETADMFSLRKLNPVQSGCCKPPADCGFVYENETLWNPGGGLVGSNPDCTRW 207 (285)
Q Consensus 128 ~~~~~d~iQ~~~~~~~~CCG~~~~~~~~~~~~~dw~~~~~~~vP~SCC~~~~~C~~~~~~~t~~~~~~~~~~~~~~c~~~ 207 (285)
.+.+||.+|+ .|+|||++| |+ ||.. ..||.|||..... +.
T Consensus 31 ~~~~~d~iQ~----~l~CCG~~~-----~~---Dw~~---~~vP~ScC~~~~~-----------------------~~-- 70 (90)
T 1g8q_A 31 AKAVVKTFHE----TLDCCGSST-----LT---ALTT---SVLKNNLCPSGSN-----------------------II-- 70 (90)
T ss_dssp HHHHHHHHHH----HHTCCSCTT-----CG---GGHH---HHHHTTCSCTTCC-----------------------HH--
T ss_pred HHHHHHHHHH----hhcCCCCCC-----hh---hhcc---CCCCCCCCCCCCC-----------------------Cc--
Confidence 4789999999 999999999 87 9964 2489999964211 11
Q ss_pred cCccccccccCcchHHHHHHHHHHh
Q 023208 208 SNDQEQLCYQCDSCKAGVLASLKKS 232 (285)
Q Consensus 208 ~~~~~~gC~~~~GC~~~l~~~l~~~ 232 (285)
+.+|. +||.+++.+|++++
T Consensus 71 ~~~~~------~GC~~~i~~~~~~n 89 (90)
T 1g8q_A 71 SNLFK------EDCHQKIDDLFSGK 89 (90)
T ss_dssp HHHTS------CCHHHHHHHHHHTC
T ss_pred ccCcc------CCcHHHHHHHHHhC
Confidence 13455 46779999999875
No 2
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=32.81 E-value=81 Score=21.02 Aligned_cols=20 Identities=25% Similarity=0.095 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 023208 238 VINIVVLIILVIFYVIGCAA 257 (285)
Q Consensus 238 ~~~~~i~~iqii~~~~a~~l 257 (285)
+++-++.++-+.|+..-|+.
T Consensus 13 vlGg~~~lll~~glcI~ccv 32 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSV 32 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhh
Confidence 44445555556666666555
No 3
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=27.49 E-value=1.6e+02 Score=20.74 Aligned_cols=73 Identities=10% Similarity=0.065 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhhcccCcchhhh-hhhhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhh
Q 023208 16 FLLSIPIIGGGIWLSSRANNTDCLK-FLQWPLIVIGVSIMVVSLAGFAGACYRNTHLMRFYLFVMFFIIAALIGFIIFAY 94 (285)
Q Consensus 16 ~i~Gi~ll~~Gi~~~~~~~~~~~~~-~~~~~li~~G~~i~iis~lGc~Ga~~es~~lL~~Y~~ll~vl~i~ei~~~i~~~ 94 (285)
.+.+.+++.+|+|....+. +... ....-++..++.+.++.+....+ + ..-..+....+++-++|.+.|....
T Consensus 8 ~~~~~~lf~iGl~g~~~r~--~ll~~LlslE~m~l~v~l~l~~~~~~~~----~-~~~~~~~l~~l~~aa~E~alGLall 80 (100)
T 3rko_K 8 LILAAILFVLGLTGLVIRR--NLLFMLIGLEIMINASALAFVVAGSYWG----Q-TDGQVMYILAISLAAAEASIGLALL 80 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCC--BHHHHHHHHHHHHHHHHHHHHHHHHHTT----C-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcC----C-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788889999766532 3222 22222666666665555433322 1 1122345566667777877664443
Q ss_pred e
Q 023208 95 A 95 (285)
Q Consensus 95 ~ 95 (285)
+
T Consensus 81 v 81 (100)
T 3rko_K 81 L 81 (100)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=26.67 E-value=3e+02 Score=27.05 Aligned_cols=19 Identities=11% Similarity=0.385 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 023208 42 LQWPLIVIGVSIMVVSLAG 60 (285)
Q Consensus 42 ~~~~li~~G~~i~iis~lG 60 (285)
+..|.+++|+.+++--+.-
T Consensus 379 ~~~P~lalg~G~~i~~~~~ 397 (724)
T 3rce_A 379 YAVPVMALGFGYFLYAFFN 397 (724)
T ss_dssp GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666655444433
No 5
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=25.78 E-value=1.7e+02 Score=20.22 Aligned_cols=52 Identities=8% Similarity=-0.181 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc--cccCCCCCccccc
Q 023208 223 AGVLASLKKSWRKVSVINIVVLIILVIFYVIGCAAFRNN--RRIDNDEPYGEAR 274 (285)
Q Consensus 223 ~~l~~~l~~~~~~v~~~~~~i~~iqii~~~~a~~l~~~~--~~~~~~~~~~~~~ 274 (285)
..+..|+-.++..-++.+-++++.-.+.++...++=+-+ |+++-+.||.+..
T Consensus 17 ~rLr~wi~~qMlKGAG~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~aP~P~~~~~ 70 (82)
T 2nrg_A 17 TNLRLWVAFQMMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPAPNITGA 70 (82)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHHHHHHHHHHHSSTTTTTCCSSSSSCSS
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCchhcccCCCCccchh
Confidence 678888888888887776666555555554444444444 5555668887654
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=25.17 E-value=1.2e+02 Score=18.41 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Q 023208 237 SVINIVVLIILVIFYVIGCAAFRN 260 (285)
Q Consensus 237 ~~~~~~i~~iqii~~~~a~~l~~~ 260 (285)
++..++++++-++++.+.+++-|+
T Consensus 15 a~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 15 ISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhheehh
Confidence 333344444444444545444333
No 7
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=20.80 E-value=2.1e+02 Score=19.53 Aligned_cols=52 Identities=10% Similarity=-0.157 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc--cccCCCCCcccc
Q 023208 222 KAGVLASLKKSWRKVSVINIVVLIILVIFYVIGCAAFRNN--RRIDNDEPYGEA 273 (285)
Q Consensus 222 ~~~l~~~l~~~~~~v~~~~~~i~~iqii~~~~a~~l~~~~--~~~~~~~~~~~~ 273 (285)
...+..|+-.++..-++.+.++++.-.+.++...++-+-+ |+++-+.||.+.
T Consensus 15 k~rLr~~i~~qMlkGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP~P~~~~ 68 (77)
T 2dw3_A 15 KTNLRLWVAFQMMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPAPNITG 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCSSCSSCCSSC
T ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCchhcccCCCCcchh
Confidence 3678889988888888777666665555554444444444 445555777653
No 8
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=20.20 E-value=2.9e+02 Score=25.51 Aligned_cols=21 Identities=24% Similarity=0.524 Sum_probs=11.4
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 023208 68 NTHLMRFYLFVMFFIIAALIG 88 (285)
Q Consensus 68 s~~lL~~Y~~ll~vl~i~ei~ 88 (285)
+..++..|+.+.++++.+-++
T Consensus 278 ~vPlI~~y~~~~m~lv~~Sll 298 (488)
T 4aq5_E 278 NVPLIGKYLIFVMFVSLVIVT 298 (488)
T ss_dssp HSCCCHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHH
Confidence 356666666655554444333
No 9
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=18.29 E-value=3.5e+02 Score=25.20 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=12.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 023208 67 RNTHLMRFYLFVMFFIIAALIG 88 (285)
Q Consensus 67 es~~lL~~Y~~ll~vl~i~ei~ 88 (285)
.+..++..|+.+.++++.+-++
T Consensus 304 ~~vPlI~~y~~~~m~lv~lSll 325 (522)
T 4aq5_C 304 LAVPLIGKYLMFIMSLVTGVVV 325 (522)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHH
Confidence 3456777776665555444443
No 10
>2gx1_A Neurotoxin MAGI-5; spider toxin; NMR {Synthetic}
Probab=13.63 E-value=71 Score=17.07 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=6.5
Q ss_pred CCCcCCCcc
Q 023208 142 SKVCPKMRR 150 (285)
Q Consensus 142 ~~~CCG~~~ 150 (285)
.-+|||.+-
T Consensus 12 ~keccgwn~ 20 (29)
T 2gx1_A 12 KKECCGWNA 20 (29)
T ss_dssp TTSBSSCCC
T ss_pred Ccccccccc
Confidence 678998654
Done!