Query 023209
Match_columns 285
No_of_seqs 211 out of 1163
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:12:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 7.6E-25 2.6E-29 162.5 6.2 62 138-199 2-63 (63)
2 1u3e_M HNH homing endonuclease 94.1 0.00078 2.7E-08 57.2 -6.6 75 101-180 72-146 (174)
3 3igm_B PF14_0633 protein; AP2 93.1 0.053 1.8E-06 41.6 2.7 28 134-164 3-31 (77)
4 1z1b_A Integrase; protein-DNA 79.1 2.1 7.2E-05 37.6 4.8 41 141-186 15-55 (356)
5 3jtz_A Integrase; four strande 53.4 23 0.00078 26.8 5.2 44 142-186 28-75 (88)
6 2yy0_A C-MYC-binding protein; 52.2 3 0.0001 29.5 0.0 11 8-18 2-12 (53)
7 1b69_A Protein (integrase); in 42.0 31 0.0011 25.7 4.1 28 136-165 9-36 (69)
8 3ju0_A Phage integrase; four s 29.5 74 0.0025 24.9 4.8 44 142-186 28-75 (108)
9 1x60_A Sporulation-specific N- 24.2 42 0.0014 23.8 2.3 23 162-184 46-68 (79)
10 1uta_A FTSN, MSGA, cell divisi 19.8 56 0.0019 23.5 2.2 23 162-184 46-68 (81)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.91 E-value=7.6e-25 Score=162.52 Aligned_cols=62 Identities=74% Similarity=1.372 Sum_probs=59.3
Q ss_pred eeeeeEEcCCCcEEEEEecCCCCCcEEecCCCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 023209 138 HYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV 199 (285)
Q Consensus 138 ~yRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFP~~~ 199 (285)
+||||+++++|||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.++.+|||.++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 79999999999999999998877899999999999999999999999999999999999864
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=94.11 E-value=0.00078 Score=57.19 Aligned_cols=75 Identities=7% Similarity=-0.095 Sum_probs=55.7
Q ss_pred cCCCCCCCCCCccccCCCcchhhhhcccCCCCCCCCceeeeeEEcCCCcEEEEEecCCCCCcEEecCCCCcHHHHHHHHH
Q 023209 101 CSNVNDDADNPVAVKNKDPDAAADDNNNNNNNNIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYD 180 (285)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~a~n~~N~~~~~~~~S~yRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD 180 (285)
...+.+++.......+.+-..+.+|+++........ .++||.+...++|.+.|.. + +.++||.|+|.+|||++|.
T Consensus 72 ~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 72 VVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp EEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred EEEcCCCCCCCCCHHHcEECCHHHHhhcccccCccc-ceeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence 467777778888888888888888887765443332 2467765333779999988 4 5678999999999999964
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=93.05 E-value=0.053 Score=41.58 Aligned_cols=28 Identities=25% Similarity=0.180 Sum_probs=23.1
Q ss_pred CCCceeeeeEEcCC-CcEEEEEecCCCCCcEE
Q 023209 134 IEEKHYRGVRRRPW-GRYAAEIRDPNRKGSRV 164 (285)
Q Consensus 134 ~~~S~yRGV~~r~~-GKW~A~I~~~~~~Gkri 164 (285)
..+|+|+||+|.+. +.|.|.-.+ +|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence 56799999999887 999999998 56654
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=79.11 E-value=2.1 Score=37.64 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=31.8
Q ss_pred eeEEcCCCcEEEEEecCCCCCcEEecCCCCcHHHHHHHHHHHHHHh
Q 023209 141 GVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRL 186 (285)
Q Consensus 141 GV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD~AA~kl 186 (285)
||+.++.|.|..+... +||++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 6888888999988765 788999996 8888877766655444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=53.44 E-value=23 Score=26.82 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=30.2
Q ss_pred eEEcCCC--cEEEEEecCCCCCcEEecCCCC--cHHHHHHHHHHHHHHh
Q 023209 142 VRRRPWG--RYAAEIRDPNRKGSRVWLGTFD--TAVEAAKAYDNAAFRL 186 (285)
Q Consensus 142 V~~r~~G--KW~A~I~~~~~~Gkri~LGtFd--T~EEAArAYD~AA~kl 186 (285)
++..+.| .|.-+.+... +-+++-||.|. |.++|....+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~G-k~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISG-KESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETT-EEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCC-eEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4556664 4888888632 33568899997 4788877777666554
No 6
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.24 E-value=3 Score=29.46 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=0.0
Q ss_pred chHHHHHHhhh
Q 023209 8 STLELISQYLL 18 (285)
Q Consensus 8 SaL~~I~qhLL 18 (285)
.||+||+|||=
T Consensus 2 ~AlefIk~~LG 12 (53)
T 2yy0_A 2 SALDFLKHHLG 12 (53)
T ss_dssp -----------
T ss_pred cHHHHHHHHcC
Confidence 58999999993
No 7
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=41.98 E-value=31 Score=25.67 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=21.5
Q ss_pred CceeeeeEEcCCCcEEEEEecCCCCCcEEe
Q 023209 136 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVW 165 (285)
Q Consensus 136 ~S~yRGV~~r~~GKW~A~I~~~~~~Gkri~ 165 (285)
.--+.|+++++.|+|++++.+. .|++.+
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~--~Gkr~~ 36 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDS--FGEPQF 36 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECT--TSSEEE
T ss_pred CccCCCeEEccCCcEEEEEEcC--CCCEEE
Confidence 3457799999999999999984 355543
No 8
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=29.54 E-value=74 Score=24.90 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=29.4
Q ss_pred eEEcCCC--cEEEEEecCCCCCcEEecCCCCc--HHHHHHHHHHHHHHh
Q 023209 142 VRRRPWG--RYAAEIRDPNRKGSRVWLGTFDT--AVEAAKAYDNAAFRL 186 (285)
Q Consensus 142 V~~r~~G--KW~A~I~~~~~~Gkri~LGtFdT--~EEAArAYD~AA~kl 186 (285)
++..+.| .|.-+.+... +-+++-||.|.. ..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~G-K~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEK-KQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETT-EEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcC-ceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4556665 4888888632 235678999974 777777766665554
No 9
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=24.20 E-value=42 Score=23.78 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=19.2
Q ss_pred cEEecCCCCcHHHHHHHHHHHHH
Q 023209 162 SRVWLGTFDTAVEAAKAYDNAAF 184 (285)
Q Consensus 162 kri~LGtFdT~EEAArAYD~AA~ 184 (285)
-+|++|-|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57999999999999988766554
No 10
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=19.80 E-value=56 Score=23.45 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=19.3
Q ss_pred cEEecCCCCcHHHHHHHHHHHHH
Q 023209 162 SRVWLGTFDTAVEAAKAYDNAAF 184 (285)
Q Consensus 162 kri~LGtFdT~EEAArAYD~AA~ 184 (285)
-||.+|-|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 58999999999999988766554
Done!