Query 023210
Match_columns 285
No_of_seqs 184 out of 386
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 09:15:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 3.8E-26 8.3E-31 165.9 6.8 51 121-171 1-51 (51)
2 PLN03162 golden-2 like transcr 99.9 8.1E-24 1.8E-28 204.1 6.7 62 17-79 230-291 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.9 4.1E-22 8.8E-27 146.8 6.3 56 22-77 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.4 0.00041 8.8E-09 48.2 5.7 48 24-75 1-48 (48)
5 smart00426 TEA TEA domain. 90.5 0.3 6.4E-06 38.1 3.2 18 26-43 5-22 (68)
6 PF14379 Myb_CC_LHEQLE: MYB-CC 90.4 0.55 1.2E-05 34.8 4.4 34 136-170 6-39 (51)
7 PF15235 GRIN_C: G protein-reg 71.0 3.4 7.3E-05 36.2 2.4 27 144-170 72-98 (137)
8 PF12776 Myb_DNA-bind_3: Myb/S 64.3 9.3 0.0002 29.1 3.5 51 26-76 1-63 (96)
9 cd00167 SANT 'SWI3, ADA2, N-Co 63.3 32 0.00069 21.7 5.4 43 26-73 1-43 (45)
10 PF00435 Spectrin: Spectrin re 60.1 61 0.0013 23.4 7.0 56 144-204 42-97 (105)
11 smart00717 SANT SANT SWI3, AD 59.3 44 0.00094 21.3 5.6 44 25-73 2-45 (49)
12 smart00501 BRIGHT BRIGHT, ARID 56.4 11 0.00023 29.4 2.6 45 30-75 33-84 (93)
13 PF01519 DUF16: Protein of unk 51.3 33 0.00072 28.8 4.8 27 141-167 65-91 (102)
14 TIGR02894 DNA_bind_RsfA transc 50.6 88 0.0019 28.2 7.7 54 17-76 41-94 (161)
15 PF07384 DUF1497: Protein of u 37.4 30 0.00066 26.1 2.3 22 25-46 36-57 (59)
16 cd07646 I-BAR_IMD_IRSp53 Inver 27.5 2.5E+02 0.0053 26.8 7.0 67 122-193 66-141 (232)
17 KOG3841 TEF-1 and related tran 25.3 53 0.0011 33.6 2.4 53 24-78 76-145 (455)
18 cd07645 I-BAR_IMD_BAIAP2L1 Inv 24.2 3.3E+02 0.0072 25.9 7.2 66 122-192 64-138 (226)
19 PF08127 Propeptide_C1: Peptid 23.6 42 0.00092 23.5 1.0 36 31-73 1-36 (41)
20 cd08783 Death_MALT1 Death doma 22.6 1.5E+02 0.0032 24.8 4.1 48 22-73 35-83 (97)
21 PF01285 TEA: TEA/ATTS domain 22.3 63 0.0014 32.8 2.4 55 20-74 45-112 (431)
22 PF12998 ING: Inhibitor of gro 21.2 3.4E+02 0.0074 20.8 5.8 7 143-149 16-22 (105)
23 PF14075 UBN_AB: Ubinuclein co 21.0 91 0.002 28.8 2.9 24 17-40 145-168 (214)
24 PF03816 LytR_cpsA_psr: Cell e 20.6 91 0.002 26.3 2.6 17 151-167 132-148 (149)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.93 E-value=3.8e-26 Score=165.92 Aligned_cols=51 Identities=71% Similarity=0.912 Sum_probs=49.0
Q ss_pred CcchhHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 023210 121 YVPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS 171 (285)
Q Consensus 121 ~~~i~EALr~QmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsiLEKAqe~La 171 (285)
+++|+|||++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999999999999999999875
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.89 E-value=8.1e-24 Score=204.10 Aligned_cols=62 Identities=45% Similarity=0.753 Sum_probs=58.3
Q ss_pred cccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023210 17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ 79 (285)
Q Consensus 17 ~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~ 79 (285)
....+|+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.++
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence 344678999999999999999999998 79999999999999999999999999999999876
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.86 E-value=4.1e-22 Score=146.76 Aligned_cols=56 Identities=66% Similarity=1.042 Sum_probs=54.2
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023210 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 22 K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (285)
|+|++||+|+|.+|++||+.+|+.+.||||.|+++|++++||..||+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 79999999999999999999998899999999999999999999999999999974
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.44 E-value=0.00041 Score=48.22 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=41.6
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 023210 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYR 75 (285)
|-.||++=+..|++||.++|. -.-+.|...|+ ++-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~---~~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK---DNWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT---THHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---cHHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 568999999999999999992 26899999998 8999999999999985
No 5
>smart00426 TEA TEA domain.
Probab=90.48 E-value=0.3 Score=38.12 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=16.6
Q ss_pred ccChHHHHHHHHHHHHhC
Q 023210 26 RWTADLHDRFVDAVTKLG 43 (285)
Q Consensus 26 rWT~eLH~rFV~AV~~LG 43 (285)
.|.++|-..|++|+...-
T Consensus 5 vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP 22 (68)
T ss_pred cCcHHHHHHHHHHHHHcC
Confidence 699999999999999875
No 6
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=90.41 E-value=0.55 Score=34.81 Aligned_cols=34 Identities=38% Similarity=0.497 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 023210 136 QRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSL 170 (285)
Q Consensus 136 rrLHEQLEVQRhLQLRIEAQGKYLQsiLEKAqe~L 170 (285)
--|+.|+||||+|.=.+|.| |-||.-+|...+-|
T Consensus 6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl 39 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL 39 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence 45778999999999888888 66776666554544
No 7
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=70.97 E-value=3.4 Score=36.20 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 023210 144 VQERLQMRIEAQGKYLQAILQKAQKSL 170 (285)
Q Consensus 144 VQRhLQLRIEAQGKYLQsiLEKAqe~L 170 (285)
||+||+++||.|++.+..--.++.++.
T Consensus 72 IQkHLE~qi~e~~~q~~~~~~~~~~~~ 98 (137)
T PF15235_consen 72 IQKHLERQIEEHERQRAPQKKQARKSP 98 (137)
T ss_pred HHHHHHHHHHHhhhccccccccccccc
Confidence 899999999999998766444444443
No 8
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=64.32 E-value=9.3 Score=29.06 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=33.7
Q ss_pred ccChHHHHHHHHHHHHh---CCC-CCCChh-----HHHhhhCC---CCCCHHHHHHhhhhhhh
Q 023210 26 RWTADLHDRFVDAVTKL---GGP-DKATPK-----SVLRLMGL---KGLTLYHLKSHLQKYRL 76 (285)
Q Consensus 26 rWT~eLH~rFV~AV~~L---GG~-~kAtPK-----~Il~lM~v---~gLT~~hVkSHLQKYRl 76 (285)
+||++..+-||+.+-+. |.- ....+| .|.+.++- -.+|..||++|+...|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988543 432 233333 45555543 34688999999886443
No 9
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=63.34 E-value=32 Score=21.69 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=32.8
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023210 26 RWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (285)
Q Consensus 26 rWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQK 73 (285)
.||++=+..|+.++.++|- ..-+.|-+.|+ +=|...|+.|..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHH
Confidence 4999999999999999982 33567777764 4677788777654
No 10
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=60.06 E-value=61 Score=23.45 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhhHHHhhhhhhhhhhHHhhhhh
Q 023210 144 VQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMN 204 (285)
Q Consensus 144 VQRhLQLRIEAQGKYLQsiLEKAqe~La~~~~~~~~~~leaakaeLsel~~~vs~l~e~~~ 204 (285)
-.+.++-.|..+..-+..|.+.++.-+.. ++......+..+.+|+..-..|.+.+.
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L~~~-----~~~~~~~i~~~~~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQLIDS-----GPEDSDEIQEKLEELNQRWEALCELVE 97 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----THTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777788888888888887552 356667778888888887666665543
No 11
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=59.33 E-value=44 Score=21.27 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=32.9
Q ss_pred cccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023210 25 LRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (285)
Q Consensus 25 lrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQK 73 (285)
-.||++=...|+.+|.++| . ..-+.|-+.|+ +=|...|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g-~--~~w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYG-K--NNWEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHcC--CCCHHHHHHHHHH
Confidence 4699999999999999998 1 23466766664 6677777766543
No 12
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=56.37 E-value=11 Score=29.39 Aligned_cols=45 Identities=29% Similarity=0.445 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCCCCCC----hhHHHhhhCCCCC---CHHHHHHhhhhhh
Q 023210 30 DLHDRFVDAVTKLGGPDKAT----PKSVLRLMGLKGL---TLYHLKSHLQKYR 75 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAt----PK~Il~lM~v~gL---T~~hVkSHLQKYR 75 (285)
+|+..|. +|..+||.+..+ =+.|.+.||+|.- ...++++|-++|=
T Consensus 33 dL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L 84 (93)
T smart00501 33 DLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYL 84 (93)
T ss_pred cHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHh
Confidence 7999998 599999987544 2678899999752 2467788888773
No 13
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=51.27 E-value=33 Score=28.81 Aligned_cols=27 Identities=48% Similarity=0.466 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023210 141 QLEVQERLQMRIEAQGKYLQAILQKAQ 167 (285)
Q Consensus 141 QLEVQRhLQLRIEAQGKYLQsiLEKAq 167 (285)
|=|.-+.||.+|.+||+-|++|++.-+
T Consensus 65 QGEqIkel~~e~k~qgktL~~I~~~L~ 91 (102)
T PF01519_consen 65 QGEQIKELQVEQKAQGKTLQLILKTLQ 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445568899999999999999997543
No 14
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=50.65 E-value=88 Score=28.20 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=39.6
Q ss_pred cccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhh
Q 023210 17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76 (285)
Q Consensus 17 ~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl 76 (285)
..++....|||+..+-..+.+||...- ..+-.++.. ...||+..|-+-||.|..
T Consensus 41 ~RTsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 41 NRTAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLKT 94 (161)
T ss_pred cccHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHHh
Confidence 345567999999999999999998654 122222211 267999999999999864
No 15
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=37.39 E-value=30 Score=26.11 Aligned_cols=22 Identities=23% Similarity=0.647 Sum_probs=19.3
Q ss_pred cccChHHHHHHHHHHHHhCCCC
Q 023210 25 LRWTADLHDRFVDAVTKLGGPD 46 (285)
Q Consensus 25 lrWT~eLH~rFV~AV~~LGG~~ 46 (285)
-++..|+|..|-+-|..|||..
T Consensus 36 ~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hHhhHHHHHHHHHHHHHhcccc
Confidence 4678999999999999999853
No 16
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=27.46 E-value=2.5e+02 Score=26.79 Aligned_cols=67 Identities=27% Similarity=0.393 Sum_probs=44.2
Q ss_pred cchhHHHHhHHHHHHhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhhHHHhhhhh
Q 023210 122 VPISEALKCQAEVQQRLQEQLEV---------QERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTF 192 (285)
Q Consensus 122 ~~i~EALr~QmEVQrrLHEQLEV---------QRhLQLRIEAQGKYLQsiLEKAqe~La~~~~~~~~~~leaakaeLsel 192 (285)
..|..||.-=-+|+|.++.+||+ -..|+-++|..-|||...+.+=|-..- .-..++|-+.++|-.+
T Consensus 66 keLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~e~k-----~k~~sleK~qseLKKl 140 (232)
T cd07646 66 KELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKYQTEHR-----SKGESLEKCQAELKKL 140 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 35677776666778777777764 457999999999999976665433322 1244555555555554
Q ss_pred h
Q 023210 193 N 193 (285)
Q Consensus 193 ~ 193 (285)
-
T Consensus 141 R 141 (232)
T cd07646 141 R 141 (232)
T ss_pred H
Confidence 3
No 17
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=25.33 E-value=53 Score=33.60 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=35.9
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHh----hhC-------------CCCCCHHHHHHhhhhhhhhh
Q 023210 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLR----LMG-------------LKGLTLYHLKSHLQKYRLGQ 78 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~----lM~-------------v~gLT~~hVkSHLQKYRl~~ 78 (285)
-=+|+++.-+.|.+|....- .--+-|-|+. |-| =+-=|+.+|.||.|..-..+
T Consensus 76 egvWSpdIEqsFqEALaiyp--pcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk 145 (455)
T KOG3841|consen 76 EGVWSPDIEQSFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 145 (455)
T ss_pred ccccChhHHHHHHHHHhhcC--CCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 34899999999999998764 2334444442 222 13457889999999764433
No 18
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=24.20 E-value=3.3e+02 Score=25.87 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=45.4
Q ss_pred cchhHHHHhHHHHHHhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhhHHHhhhhh
Q 023210 122 VPISEALKCQAEVQQRLQEQLE---------VQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTF 192 (285)
Q Consensus 122 ~~i~EALr~QmEVQrrLHEQLE---------VQRhLQLRIEAQGKYLQsiLEKAqe~La~~~~~~~~~~leaakaeLsel 192 (285)
..|.++|--=-||+|+++.||| +-..|.-.+|..-||+...+.+=|..-- .-..++|-+.++|--+
T Consensus 64 keLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~E~k-----~k~dsLeK~~seLKK~ 138 (226)
T cd07645 64 KELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKRYQTEHK-----NKLDSLEKSQADLKKI 138 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 3567777666789999988887 3457888899999999977766333222 2345566666665555
No 19
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=23.63 E-value=42 Score=23.49 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023210 31 LHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (285)
Q Consensus 31 LH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQK 73 (285)
|.+.||+-|+...-..+|... .++.|..+|++.|-.
T Consensus 1 Lsde~I~~IN~~~~tWkAG~N-------F~~~~~~~ik~LlGv 36 (41)
T PF08127_consen 1 LSDEFIDYINSKNTTWKAGRN-------FENTSIEYIKRLLGV 36 (41)
T ss_dssp S-HHHHHHHHHCT-SEEE-----------SSB-HHHHHHCS-B
T ss_pred CCHHHHHHHHcCCCcccCCCC-------CCCCCHHHHHHHcCC
Confidence 457899999999866777664 367777777776653
No 20
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=22.61 E-value=1.5e+02 Score=24.84 Aligned_cols=48 Identities=29% Similarity=0.506 Sum_probs=38.9
Q ss_pred CCCcccCh-HHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023210 22 KPRLRWTA-DLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (285)
Q Consensus 22 K~RlrWT~-eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQK 73 (285)
.+|||-++ ||+++-...+..-| ...|..|+.|++.|=|+.++-.-||+
T Consensus 35 ~~~fr~S~~el~~cslkvl~p~g----SPsk~LL~~~~~rg~Tv~~Ll~~L~~ 83 (97)
T cd08783 35 RGRFRLSCLDLEQCSLKVLEPEG----SPSRSLLKLLGERGCTVTELSEFLQA 83 (97)
T ss_pred CCccccCHHHHHHHHHHHhcCCC----CchHHHHHHHHHcCCcHHHHHHHHHH
Confidence 45888888 88887776665544 55689999999999999999888886
No 21
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=22.32 E-value=63 Score=32.78 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=28.7
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCC-----------CC--CCHHHHHHhhhhh
Q 023210 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGL-----------KG--LTLYHLKSHLQKY 74 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v-----------~g--LT~~hVkSHLQKY 74 (285)
+++..-+|++++...|++|+...-=-.+..-+.--++.|- .| =|+.+|.||+|..
T Consensus 45 ~~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 45 DGDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp -GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 4567889999999999999987641112221111111121 23 4677999999987
No 22
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=21.19 E-value=3.4e+02 Score=20.81 Aligned_cols=7 Identities=43% Similarity=0.610 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 023210 143 EVQERLQ 149 (285)
Q Consensus 143 EVQRhLQ 149 (285)
||||+|.
T Consensus 16 el~r~l~ 22 (105)
T PF12998_consen 16 ELQRNLT 22 (105)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 23
>PF14075 UBN_AB: Ubinuclein conserved middle domain
Probab=21.03 E-value=91 Score=28.75 Aligned_cols=24 Identities=17% Similarity=0.657 Sum_probs=20.1
Q ss_pred cccCCCCCcccChHHHHHHHHHHH
Q 023210 17 MTRDPKPRLRWTADLHDRFVDAVT 40 (285)
Q Consensus 17 ~s~~~K~RlrWT~eLH~rFV~AV~ 40 (285)
....|+.|++||.++-..+.+-|.
T Consensus 145 ~~~~PrKkF~Wtde~R~lL~~lv~ 168 (214)
T PF14075_consen 145 KVKGPRKKFQWTDEIRELLCELVK 168 (214)
T ss_pred CCCCCCcCCCCCHHHHHHHHHHHH
Confidence 346788999999999999888775
No 24
>PF03816 LytR_cpsA_psr: Cell envelope-related transcriptional attenuator domain; InterPro: IPR004474 This entry describes a domain of unknown function that is found in the predicted extracellular domain of a number of putative membrane-bound proteins. One of these is protein psr, described as a penicillin binding protein 5 (PDP-5) synthesis repressor. Another is Bacillus subtilis LytR, described as a transcriptional attenuator of itself and the LytABC operon, where LytC is N-acetylmuramoyl-L-alanine amidase. A third is CpsA, a putative regulatory protein involved in exocellular polysaccharide biosynthesis. These proteins share the property of having a short putative N-terminal cytoplasmic domain and transmembrane domain forming a signal-anchor.; PDB: 3PE5_B 3QFI_A 3NRO_B 3OKZ_B 3OWQ_C 3MEJ_A 4DE9_A 3TEP_A 3TEL_A 3TFL_A ....
Probab=20.57 E-value=91 Score=26.33 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023210 151 RIEAQGKYLQAILQKAQ 167 (285)
Q Consensus 151 RIEAQGKYLQsiLEKAq 167 (285)
||+.|..+|.++++|++
T Consensus 132 R~~rQ~~~l~al~~k~~ 148 (149)
T PF03816_consen 132 RIQRQQEVLKALLEKLK 148 (149)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 89999999999999875
Done!