Query 023210
Match_columns 285
No_of_seqs 184 out of 386
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 18:13:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 8.3E-30 2.9E-34 191.2 7.4 61 18-79 1-61 (64)
2 2yus_A SWI/SNF-related matrix- 90.4 0.98 3.4E-05 34.1 7.1 46 23-74 17-62 (79)
3 2cu7_A KIAA1915 protein; nucle 89.7 0.97 3.3E-05 32.9 6.4 52 20-77 5-56 (72)
4 2yum_A ZZZ3 protein, zinc fing 89.7 0.61 2.1E-05 34.0 5.4 55 20-77 4-61 (75)
5 2hzd_A Transcriptional enhance 87.7 0.36 1.2E-05 37.7 3.1 56 21-78 3-75 (82)
6 1x41_A Transcriptional adaptor 87.0 2.2 7.6E-05 30.0 6.6 51 21-76 5-55 (60)
7 2xag_B REST corepressor 1; ami 83.8 1.8 6.1E-05 43.0 6.5 52 22-79 378-429 (482)
8 2iw5_B Protein corest, REST co 82.4 2.1 7.1E-05 39.1 5.9 53 20-78 129-181 (235)
9 3sjm_A Telomeric repeat-bindin 80.1 4.9 0.00017 28.9 6.2 52 17-71 4-55 (64)
10 2cqq_A RSGI RUH-037, DNAJ homo 77.7 3.4 0.00012 30.8 4.8 47 24-76 8-57 (72)
11 2d9a_A B-MYB, MYB-related prot 70.2 16 0.00055 25.2 6.5 50 20-74 4-53 (60)
12 2cqr_A RSGI RUH-043, DNAJ homo 69.7 15 0.00051 27.3 6.6 51 23-76 17-68 (73)
13 2elk_A SPCC24B10.08C protein; 67.6 22 0.00074 24.7 6.8 48 24-75 9-56 (58)
14 2ba2_A D12_ORF131, hypothetica 66.5 14 0.00048 29.0 6.0 41 124-167 34-74 (85)
15 1guu_A C-MYB, MYB proto-oncoge 64.9 17 0.00058 24.3 5.6 46 24-74 3-48 (52)
16 2yqk_A Arginine-glutamic acid 63.9 6.5 0.00022 28.2 3.5 47 18-69 3-49 (63)
17 1ity_A TRF1; helix-turn-helix, 63.0 25 0.00085 25.0 6.5 53 19-74 5-57 (69)
18 3uun_A Dystrophin; triple heli 61.1 26 0.0009 25.6 6.6 62 140-203 40-101 (119)
19 3uul_A Utrophin; spectrin repe 60.5 31 0.0011 25.4 6.9 62 140-203 40-101 (118)
20 1gvd_A MYB proto-oncogene prot 54.8 33 0.0011 22.8 5.7 46 24-74 3-48 (52)
21 2dim_A Cell division cycle 5-l 53.6 42 0.0014 23.8 6.4 50 20-74 5-54 (70)
22 4eef_G F-HB80.4, designed hema 51.6 5.8 0.0002 30.4 1.5 58 12-72 8-66 (74)
23 1wgx_A KIAA1903 protein; MYB D 49.2 27 0.00092 26.3 4.9 46 26-74 10-56 (73)
24 2da3_A Alpha-fetoprotein enhan 47.1 37 0.0013 24.2 5.2 62 13-77 10-71 (80)
25 2eqr_A N-COR1, N-COR, nuclear 46.9 17 0.00057 25.6 3.3 45 20-70 8-52 (61)
26 2kes_A Synphilin-1; synphillin 45.7 19 0.00066 25.3 3.3 24 133-156 15-42 (48)
27 2cjj_A Radialis; plant develop 44.8 38 0.0013 26.2 5.3 51 25-78 9-60 (93)
28 1w0t_A Telomeric repeat bindin 41.0 79 0.0027 21.1 6.2 48 24-74 2-49 (53)
29 2li6_A SWI/SNF chromatin-remod 40.1 5.2 0.00018 31.7 -0.4 44 29-75 49-96 (116)
30 2dmt_A Homeobox protein BARH-l 37.6 1E+02 0.0036 22.1 6.5 67 8-77 5-71 (80)
31 2lm1_A Lysine-specific demethy 37.1 12 0.00042 28.8 1.3 45 29-74 44-94 (107)
32 2eqy_A RBP2 like, jumonji, at 34.2 18 0.00062 28.9 2.0 45 30-75 43-93 (122)
33 1c20_A DEAD ringer protein; DN 33.6 15 0.00051 29.4 1.4 46 30-76 53-105 (128)
34 1kkx_A Transcription regulator 31.4 12 0.00042 30.1 0.5 45 30-77 49-97 (123)
35 2cxy_A BAF250B subunit, HBAF25 31.3 17 0.00059 29.0 1.4 44 30-74 52-101 (125)
36 2jrz_A Histone demethylase jar 30.9 17 0.00059 28.7 1.3 44 30-74 41-90 (117)
37 3ok8_A Brain-specific angiogen 30.7 79 0.0027 28.3 5.7 42 123-164 72-122 (222)
38 2crg_A Metastasis associated p 29.9 47 0.0016 24.1 3.4 46 21-71 5-50 (70)
39 2aje_A Telomere repeat-binding 29.6 1.3E+02 0.0043 23.9 6.2 50 19-71 8-59 (105)
40 2jxj_A Histone demethylase jar 29.5 18 0.00061 27.3 1.1 44 30-74 37-86 (96)
41 2din_A Cell division cycle 5-l 27.1 1.6E+02 0.0054 20.4 6.0 51 20-77 5-55 (66)
42 1m1j_B Fibrinogen beta chain; 27.1 3.2E+02 0.011 26.9 9.7 66 132-202 131-197 (464)
43 1gv2_A C-MYB, MYB proto-oncoge 26.6 1.4E+02 0.0047 22.3 5.7 46 24-74 4-49 (105)
44 3lbx_A Spectrin alpha chain, e 25.1 2.7E+02 0.0091 22.3 8.1 53 146-203 98-150 (161)
45 1gv2_A C-MYB, MYB proto-oncoge 24.5 1.8E+02 0.0062 21.6 6.0 46 22-73 54-99 (105)
46 1ig6_A MRF-2, modulator recogn 24.4 15 0.0005 28.5 -0.2 45 29-74 33-84 (107)
47 3osg_A MYB21; transcription-DN 24.3 1.7E+02 0.0058 22.8 6.0 50 19-74 6-55 (126)
48 3f31_A Spectrin alpha chain, b 23.8 2.2E+02 0.0074 22.4 6.6 53 146-203 88-140 (149)
49 2kk0_A AT-rich interactive dom 23.7 35 0.0012 28.1 1.9 44 30-74 65-115 (145)
50 2k9n_A MYB24; R2R3 domain, DNA 21.8 2.3E+02 0.008 21.3 6.2 47 23-75 52-98 (107)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96 E-value=8.3e-30 Score=191.16 Aligned_cols=61 Identities=44% Similarity=0.788 Sum_probs=57.8
Q ss_pred ccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023210 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ 79 (285)
Q Consensus 18 s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~ 79 (285)
++++|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+...
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999 79999999999999999999999999999999753
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=90.38 E-value=0.98 Score=34.10 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=38.9
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023210 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 23 ~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (285)
.+-.||++=+.+|++||...|+ .=+.|-+.| ++=|..+++.|-++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v--~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKD----DWNKVSEHV--GSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHH--SSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHh
Confidence 4678999999999999999993 346777776 478999999999876
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=89.69 E-value=0.97 Score=32.92 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=42.0
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023210 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (285)
+.-.+-.||+|=++.|+++|..+|- .=..|-+.| ||=|-.+|+.|.++|-..
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 3446678999999999999999992 456676654 789999999999988544
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.69 E-value=0.61 Score=34.03 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=41.5
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCCh---hHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023210 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATP---KSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtP---K~Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (285)
+...+=.||+|=+.+|+++|..+| .+...| +.|-+.| +|=|..+|+.|-++|-..
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 344556899999999999999998 333223 3455554 789999999999998654
No 5
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=87.70 E-value=0.36 Score=37.65 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=36.1
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhh---h-C-------------CCCCCHHHHHHhhhhhhhhh
Q 023210 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRL---M-G-------------LKGLTLYHLKSHLQKYRLGQ 78 (285)
Q Consensus 21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~l---M-~-------------v~gLT~~hVkSHLQKYRl~~ 78 (285)
++..=+|.++|-..|++|+...-=....+ -+|.. | | -+-=|..+|.||||.-|..+
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k--~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRRK--IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCCC--CCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCccc--eeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 44566899999999999999875111222 22211 1 1 03346779999999876543
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=86.95 E-value=2.2 Score=29.99 Aligned_cols=51 Identities=24% Similarity=0.194 Sum_probs=39.7
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhh
Q 023210 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76 (285)
Q Consensus 21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl 76 (285)
+-.|-.||+|=..+|++||..+| . ..=+.|-+.| |+=|-.+++.|-++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 44566899999999999999998 1 1346677766 68889999998887643
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=83.79 E-value=1.8 Score=42.96 Aligned_cols=52 Identities=25% Similarity=0.414 Sum_probs=44.4
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023210 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ 79 (285)
Q Consensus 22 K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~ 79 (285)
+..-+||++=|..|++|+.+.| + .=+.|-++++-. |..+|++|-++||....
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG---k-dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG---R-DFQAISDVIGNK--SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT---T-CHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence 5578999999999999999998 2 578888887755 89999999999987654
No 8
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=82.41 E-value=2.1 Score=39.05 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=44.4
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhh
Q 023210 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQ 78 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~ 78 (285)
..+..-+||++=+..|++|+...| + .=..|-++ |++=|..+|++|..+||...
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG---K-DW~~IAk~--VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG---R-DFQAISDV--IGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS---S-CHHHHHHH--HSSCCHHHHHHHHHHTTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence 446677999999999999999998 1 37778777 57889999999999998653
No 9
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=80.12 E-value=4.9 Score=28.95 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=36.9
Q ss_pred cccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhh
Q 023210 17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71 (285)
Q Consensus 17 ~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHL 71 (285)
+++..+.|-.||+|=-++.+++|.+.|. -.=+.|.+.++.+|=|-.+++-+-
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 4 MTTNITKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHH
Confidence 3455567778999999999999999982 135678888777788888877543
No 10
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=77.66 E-value=3.4 Score=30.76 Aligned_cols=47 Identities=15% Similarity=0.357 Sum_probs=36.7
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhH---HHhhhCCCCCCHHHHHHhhhhhhh
Q 023210 24 RLRWTADLHDRFVDAVTKLGGPDKATPKS---VLRLMGLKGLTLYHLKSHLQKYRL 76 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~---Il~lM~v~gLT~~hVkSHLQKYRl 76 (285)
+-.||.|=+.+|..|+..+++ -||.+ |-..| |=|..+|+.|-+++..
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 346999999999999999983 46654 55565 6799999999877543
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=70.25 E-value=16 Score=25.21 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=37.6
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023210 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (285)
+...|-.||+|=.++++++|.++|- ..=..|-+.| +|=|-.+++.|-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 4556778999999999999999982 1235566664 677888888777654
No 12
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=69.67 E-value=15 Score=27.35 Aligned_cols=51 Identities=6% Similarity=0.040 Sum_probs=39.3
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhh-CCCCCCHHHHHHhhhhhhh
Q 023210 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLM-GLKGLTLYHLKSHLQKYRL 76 (285)
Q Consensus 23 ~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM-~v~gLT~~hVkSHLQKYRl 76 (285)
.+-.||++=...|+.||..+| +-+|..--++= -|||=|-.+|+.|-+.+..
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g---~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYP---RGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSC---SSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344699999999999999998 23786654432 3589999999999887643
No 13
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=67.59 E-value=22 Score=24.73 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=36.0
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 023210 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYR 75 (285)
+-.||++=..++++||.+.| . ..=+.|-+.|+. +=|..+++.|-++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G-~--~~W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG-L--GNWADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT-T--TCHHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 44699999999999999998 1 234566666531 678888888887763
No 14
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=66.51 E-value=14 Score=29.02 Aligned_cols=41 Identities=37% Similarity=0.438 Sum_probs=28.8
Q ss_pred hhHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023210 124 ISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQ 167 (285)
Q Consensus 124 i~EALr~QmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsiLEKAq 167 (285)
|.+.+..|=|-=+.--||+ +.||+-+.|||+-|+.||+--+
T Consensus 34 ie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~ 74 (85)
T 2ba2_A 34 VMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQ 74 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666655333333444 8899999999999999997543
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=64.90 E-value=17 Score=24.27 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=35.8
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023210 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (285)
|-.||+|=..+++++|.+.|. ..=+.|-+.| ||=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999982 2346666665 678888888877665
No 16
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.89 E-value=6.5 Score=28.16 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=32.8
Q ss_pred ccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHH
Q 023210 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKS 69 (285)
Q Consensus 18 s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkS 69 (285)
+.+...+-.||++=|..|.+|+...| + .-..|-+.| ||.=|..+|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG---K-df~~I~~~~-v~~Kt~~~~v~ 49 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG---K-NFFRIRKEL-LPNKETGELIT 49 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC---S-CHHHHHHHS-CTTSCHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC---c-cHHHHHHHH-cCCCcHHHHHH
Confidence 34555667999999999999999999 2 244554411 56667777653
No 17
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=62.97 E-value=25 Score=25.00 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=41.1
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023210 19 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 19 ~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (285)
.+.++|-.||+|=-+..+++|..+|. -.=..|...|+..|=|-.+++.+-..|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 35678889999999999999999981 134678788765477888888776654
No 18
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=61.12 E-value=26 Score=25.63 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhhHHHhhhhhhhhhhHHhhhh
Q 023210 140 EQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESM 203 (285)
Q Consensus 140 EQLEVQRhLQLRIEAQGKYLQsiLEKAqe~La~~~~~~~~~~leaakaeLsel~~~vs~l~e~~ 203 (285)
.||+-.+.|+--|+++..-+.+|.+.+++-+.. ....+.....-+..|.+|+..-..|...+
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~--~~~~~~~~~~i~~~l~~l~~rw~~L~~~~ 101 (119)
T 3uun_A 40 DQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGT--GKLSEDEETEVQEQMNLLNSRWECLRVAS 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777889999999999999988873 12223333445777888887666665544
No 19
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=60.50 E-value=31 Score=25.36 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhhHHHhhhhhhhhhhHHhhhh
Q 023210 140 EQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESM 203 (285)
Q Consensus 140 EQLEVQRhLQLRIEAQGKYLQsiLEKAqe~La~~~~~~~~~~leaakaeLsel~~~vs~l~e~~ 203 (285)
+||.-.+.|+--|.++..-+.+|.+.+++-+.. ...++.....-+..|.+|+..-..|...+
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~--~~~~~~~~~~i~~~l~~l~~rw~~L~~~~ 101 (118)
T 3uul_A 40 EQFATHETFMMELSAHQSSVGSVLQAGNQLMTQ--GTLSDEEEFEIQEQMTLLNARWEALRVES 101 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444666777889999999999999998873 11223333445778888888766666544
No 20
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=54.77 E-value=33 Score=22.84 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=34.5
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023210 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (285)
|-.||+|=..+++++|.+.|- ..=..|-+.| +|=|-.+++.|-..|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 447999999999999999982 1234555554 678888888777665
No 21
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.56 E-value=42 Score=23.76 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=37.8
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023210 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (285)
+...|=.||++=.++++++|..+|- ..=+.|-..|+ |=|-.+++.|-..|
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 3446678999999999999999981 23466767664 77888888776665
No 22
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=51.58 E-value=5.8 Score=30.41 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=35.6
Q ss_pred CCccccccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhC-CCCCCHHHHHHhhh
Q 023210 12 ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMG-LKGLTLYHLKSHLQ 72 (285)
Q Consensus 12 ~~g~~~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~-v~gLT~~hVkSHLQ 72 (285)
|.|..++...-.--.||.+=...|..|+.... +-||.+--++-. |||=|...|+.|-|
T Consensus 8 ~~~~~m~s~~~ss~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 8 DKGSHMASTRGSGRPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --------------CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred cccceeccCCCCCCCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 44543333333345699999999999998885 567866554333 68999999999876
No 23
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=49.24 E-value=27 Score=26.28 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=36.1
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChhHHHhh-hCCCCCCHHHHHHhhhhh
Q 023210 26 RWTADLHDRFVDAVTKLGGPDKATPKSVLRL-MGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 26 rWT~eLH~rFV~AV~~LGG~~kAtPK~Il~l-M~v~gLT~~hVkSHLQKY 74 (285)
.||.+=..+|..|+..++ +.+|-+--++ .-|||=|.+.|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 599999999999999987 4588766543 337889999998776654
No 24
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=47.08 E-value=37 Score=24.23 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=41.7
Q ss_pred CccccccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023210 13 NGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 13 ~g~~~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (285)
++......+++|.++|++-- ..++.+.... ...++..+.++...-|||..+|+.=.|.-|..
T Consensus 10 ~~~~~~~~rr~Rt~ft~~Ql-~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 71 (80)
T 2da3_A 10 GGEEPQRDKRLRTTITPEQL-EILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRAR 71 (80)
T ss_dssp CCCCCCCCTTCCSSCCTTTH-HHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHH-HHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHh
Confidence 33445566778888888632 3344444443 35666666666666789999999988887654
No 25
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.93 E-value=17 Score=25.63 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=34.5
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHh
Q 023210 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSH 70 (285)
..+..-.||++=|+.|++|+.+.| . .=..|-.+ +|+=|..+|..|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g--k--~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP--K--NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST--T--CHHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC--C--CHHHHHHH--cCCCCHHHHHHH
Confidence 446678899999999999999998 2 34566555 568888887654
No 26
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=45.71 E-value=19 Score=25.31 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=16.8
Q ss_pred HHHHhHHHH----HHHHHHHHHHHHHHH
Q 023210 133 EVQQRLQEQ----LEVQERLQMRIEAQG 156 (285)
Q Consensus 133 EVQrrLHEQ----LEVQRhLQLRIEAQG 156 (285)
.+-|+|+|| +-+|.+||.-+|+|-
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345667776 457888888888773
No 27
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=44.82 E-value=38 Score=26.23 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=38.2
Q ss_pred cccChHHHHHHHHHHHHhCCCCCCChhHHHhh-hCCCCCCHHHHHHhhhhhhhhh
Q 023210 25 LRWTADLHDRFVDAVTKLGGPDKATPKSVLRL-MGLKGLTLYHLKSHLQKYRLGQ 78 (285)
Q Consensus 25 lrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~l-M~v~gLT~~hVkSHLQKYRl~~ 78 (285)
=.||++=...|+.|+..+| +-+|.+--.+ --|||=|-.+|+.|-+.+....
T Consensus 9 ~~WT~eEd~~L~~al~~~~---~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYD---KDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSC---TTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3699999999999999998 2366543321 2257999999999998875443
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=40.98 E-value=79 Score=21.15 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=35.6
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023210 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (285)
|-.||+|=.+..+++|...|. ..=+.|.+.|+..|=|-.+++.+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999982 234677777765477777777654443
No 29
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=40.10 E-value=5.2 Score=31.71 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCCHHHHHHhhhhhh
Q 023210 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLTLYHLKSHLQKYR 75 (285)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT~~hVkSHLQKYR 75 (285)
-+|+..|.. |...||.++.+. +.|.+.|++|. ...+++|-.||=
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L 96 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRIL 96 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHH
Confidence 378888875 789999987654 57889999987 466777777663
No 30
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.63 E-value=1e+02 Score=22.10 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=44.4
Q ss_pred CCCCCCccccccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023210 8 SYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 8 ~~~~~~g~~~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (285)
+.+.+.|.......++|..+|++--.. ++.+...- ...++..+.++...-|||..+|+.=.|.-|..
T Consensus 5 ~~~~~~~~~~~~~rr~Rt~ft~~Q~~~-Le~~F~~~--~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 71 (80)
T 2dmt_A 5 SSGGEPGTKAKKGRRSRTVFTELQLMG-LEKRFEKQ--KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMK 71 (80)
T ss_dssp CCCCCSCCCCCCCCCSCCCCCHHHHHH-HHHHHHHC--SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHhc--CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHH
Confidence 334445555666778888899864333 33333333 35666777777777789999999988876654
No 31
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=37.12 E-value=12 Score=28.82 Aligned_cols=45 Identities=24% Similarity=0.214 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhh
Q 023210 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKY 74 (285)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKY 74 (285)
-+||..|.. |..+||.++.+- +.|.+.|++|.-| ...++.|-.||
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 388998876 778999987664 4678899997632 24566665555
No 32
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.17 E-value=18 Score=28.87 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhhh
Q 023210 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKYR 75 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKYR 75 (285)
+|+..|.. |..+||.++.+- +.|.+.|++|.-+ ..++++|-.||=
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 78888875 889999987654 5788899997643 245677666663
No 33
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=33.61 E-value=15 Score=29.43 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCC-C--HHHHHHhhhhhhh
Q 023210 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGL-T--LYHLKSHLQKYRL 76 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gL-T--~~hVkSHLQKYRl 76 (285)
+||..|.. |..+||.++.+- +.|.+.||+|.- | ...+++|-.||=.
T Consensus 53 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~ 105 (128)
T 1c20_A 53 DLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLY 105 (128)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTH
T ss_pred cHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 78988876 789999987654 578889998752 2 4567777666633
No 34
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=31.38 E-value=12 Score=30.14 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023210 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (285)
+|+..|.. |..+||.++.+. +.|.+.|++|. -..+++|-.||=..
T Consensus 49 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 49 NLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLP 97 (123)
T ss_dssp CTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHHH
Confidence 78887765 899999988776 56788999987 66778777776443
No 35
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=31.32 E-value=17 Score=29.04 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhh
Q 023210 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKY 74 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKY 74 (285)
+||..|.. |..+||.++.+- +.|.+.|++|.-| ...++.|-.||
T Consensus 52 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 52 DLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp CHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78888875 789999986654 5788899998632 23456555555
No 36
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=30.88 E-value=17 Score=28.75 Aligned_cols=44 Identities=20% Similarity=0.129 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhh
Q 023210 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKY 74 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKY 74 (285)
+|+..|.. |..+||.++.+- +.|.+.|++|.-| ..++++|-.||
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78888875 788999987664 5788899997433 34567766666
No 37
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=30.70 E-value=79 Score=28.31 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=34.3
Q ss_pred chhHHHHhHHHHHHhHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 023210 123 PISEALKCQAEVQQRLQEQLEV---------QERLQMRIEAQGKYLQAILQ 164 (285)
Q Consensus 123 ~i~EALr~QmEVQrrLHEQLEV---------QRhLQLRIEAQGKYLQsiLE 164 (285)
.|.+||.-=-|+||+|..+||. -.+|+-+||.-.||++....
T Consensus 72 eLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K 122 (222)
T 3ok8_A 72 ILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQ 122 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778887777899999998874 57899999999999985543
No 38
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=29.86 E-value=47 Score=24.14 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=32.9
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhh
Q 023210 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71 (285)
Q Consensus 21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHL 71 (285)
.+..-.||++=|..|.+|+...| -+ -..|-+.| ||.=|...|..+-
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYG-KD---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCCHHHHHHHH
Confidence 35666899999999999999998 22 45554411 5677777776543
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=29.59 E-value=1.3e+02 Score=23.87 Aligned_cols=50 Identities=22% Similarity=0.155 Sum_probs=38.5
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhC--CCCCCHHHHHHhh
Q 023210 19 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMG--LKGLTLYHLKSHL 71 (285)
Q Consensus 19 ~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~--v~gLT~~hVkSHL 71 (285)
...++|-.||+|=-+..+++|.++|. -.=+.|++.+. .+|=|--++|.+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrW 59 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKW 59 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHH
Confidence 46788999999999999999999993 13457777553 3788888888643
No 40
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=29.48 E-value=18 Score=27.34 Aligned_cols=44 Identities=27% Similarity=0.150 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhh
Q 023210 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKY 74 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKY 74 (285)
+|+..|.. |...||.++.+- +.|.+.|++|.-+ ...+++|-.||
T Consensus 37 DL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 37 DLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred cHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 67887765 789999987664 5778899986533 33556655554
No 41
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.13 E-value=1.6e+02 Score=20.43 Aligned_cols=51 Identities=8% Similarity=0.178 Sum_probs=39.0
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023210 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (285)
+.-.+-.||+|=..+++++|..+|- .=..|-+++ |=|-.+++.|-+.|-..
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLDK 55 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhCh
Confidence 3445668999999999999999982 346666644 58889999998876443
No 42
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.11 E-value=3.2e+02 Score=26.86 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=41.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccCCCCCCCcchhhHHHhhhhhhhhhhHHhhh
Q 023210 132 AEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQ-KSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMES 202 (285)
Q Consensus 132 mEVQrrLHEQLEVQRhLQLRIEAQGKYLQsiLEKAq-e~La~~~~~~~~~~leaakaeLsel~~~vs~l~e~ 202 (285)
.+-|+++.+..++=......||.|-+|++.++.... ..+.. ...-++.-+..+..|..+|..+++.
T Consensus 131 k~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~-----L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 131 VKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRV-----LRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888899999999988876432 22221 1122344455566666666555543
No 43
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=26.61 E-value=1.4e+02 Score=22.33 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=34.9
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023210 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (285)
+-.||+|=.++++++|...|. -.=+.|-+.| ||=|..+++.|-..|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 447999999999999999983 1245666665 688888888776654
No 44
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=25.07 E-value=2.7e+02 Score=22.33 Aligned_cols=53 Identities=9% Similarity=0.300 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhhHHHhhhhhhhhhhHHhhhh
Q 023210 146 ERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESM 203 (285)
Q Consensus 146 RhLQLRIEAQGKYLQsiLEKAqe~La~~~~~~~~~~leaakaeLsel~~~vs~l~e~~ 203 (285)
+.++--|+++...++.|.+.+++-+.. ++...+..+..|.+|+..-..|.+.+
T Consensus 98 ~afe~El~a~~~~~~~l~~~g~~Li~~-----~~~~~~~I~~rl~eL~~~W~~L~~~~ 150 (161)
T 3lbx_A 98 QSLEAEVQTKSRLMSELEKTREERFTM-----GHSAHEETKAHIEELRHLWDLLLELT 150 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCT-----TCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 455556889999999999999998883 34455666777888877655555543
No 45
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=24.49 E-value=1.8e+02 Score=21.63 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=35.7
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023210 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (285)
Q Consensus 22 K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQK 73 (285)
-.+-.||+|=...++++|.++|. .=..|-+. +||=|-.+|+.|-..
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~--l~gRt~~~~k~rw~~ 99 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKL--LPGRTDNAIKNHWNS 99 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTT--CTTCCHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHHHHH
Confidence 34568999999999999999983 23455554 589999999988654
No 46
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=24.43 E-value=15 Score=28.47 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCC-C--HHHHHHhhhhh
Q 023210 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGL-T--LYHLKSHLQKY 74 (285)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gL-T--~~hVkSHLQKY 74 (285)
-+|+..|.. |..+||.++.+- +.|.+.|+++.- | -.++++|-.||
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~ 84 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 84 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Confidence 478888875 789999987665 467889998642 2 24567666665
No 47
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=24.26 E-value=1.7e+02 Score=22.83 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=36.9
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023210 19 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 19 ~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (285)
..+..|-.||+|=-++++++|.+.|. .=+.|-+.| ||=|..++..+-..|
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNY 55 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhh
Confidence 34567788999999999999999983 456666665 566777776665544
No 48
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=23.80 E-value=2.2e+02 Score=22.40 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhhHHHhhhhhhhhhhHHhhhh
Q 023210 146 ERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESM 203 (285)
Q Consensus 146 RhLQLRIEAQGKYLQsiLEKAqe~La~~~~~~~~~~leaakaeLsel~~~vs~l~e~~ 203 (285)
+.++--|+++...++.|.+.+++-+.. ++.+.+..+..|.+|+..-..|.+.+
T Consensus 88 ~afe~El~a~~~~l~~v~~~g~~Li~~-----~~~~~~~I~~rl~~l~~~W~~L~~~~ 140 (149)
T 3f31_A 88 QAFEAEVQANSGAIVKLDETGNLMISE-----GHFASETIRTRLMELHRQWELLLEKM 140 (149)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHH-----TCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667889999999999999998884 34455666777888877655555543
No 49
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=23.74 E-value=35 Score=28.05 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCC-C--HHHHHHhhhhh
Q 023210 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGL-T--LYHLKSHLQKY 74 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gL-T--~~hVkSHLQKY 74 (285)
+|+..|.. |..+||.++.+- +.|.+.|++|.- | .+.++.|-.||
T Consensus 65 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~ 115 (145)
T 2kk0_A 65 DLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 115 (145)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHH
Confidence 78888876 789999987664 578889999762 1 35667766665
No 50
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=21.81 E-value=2.3e+02 Score=21.32 Aligned_cols=47 Identities=6% Similarity=0.117 Sum_probs=37.4
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 023210 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75 (285)
Q Consensus 23 ~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYR 75 (285)
.+-.||+|=...++++|..+|. .=..|-+.| ||=|-.+|+.|-..+.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~ 98 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIA 98 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence 4568999999999999999983 245666665 7999999998876543
Done!