BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023213
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/210 (60%), Positives = 141/210 (67%), Gaps = 37/210 (17%)
Query: 113 DSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMT---------------------- 150
++ ERIK GF+HFK+EKY+KNPALY ELAKGQSP +M
Sbjct: 12 EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAF 71
Query: 151 ---------------KXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNS 195
K LHLKVSNIVVIGHSACGGIKGL+SF FDG S
Sbjct: 72 VVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYS 131
Query: 196 TDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKT 255
TDFIE+WVKIG+PAK+KV +HGD PF + CT+CEKEAVN SL NLLTYPFVREGLVNKT
Sbjct: 132 TDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKT 191
Query: 256 LALKGGYYDFVNGSFELWGLDFSLSPPLSV 285
LALKGGYYDFV GSFELWGL+F LS SV
Sbjct: 192 LALKGGYYDFVKGSFELWGLEFGLSSTFSV 221
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 38/113 (33%)
Query: 125 FKREKYEKNPALYSELAKGQSPKYMTKXXXXXXXXXXXXL-------------------- 164
+++E +++P ++ LA GQSP+Y+ L
Sbjct: 46 WRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIHS 105
Query: 165 -------------HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVK 204
+LKV +I+V GH CGG K + G++ I++W++
Sbjct: 106 DISFLSVLQYAVQYLKVKHILVCGHYGCGGAKAAL-----GDSRLGLIDNWLR 153
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 165 HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVK 204
+LKV +VV GH ACGG + G++ I++W++
Sbjct: 373 YLKVKRVVVCGHYACGGCAAAL-----GDSRLGLIDNWLR 407
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3I|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|G Chain G, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|H Chain H, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|I Chain I, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|J Chain J, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|K Chain K, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|L Chain L, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
Length = 229
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 166 LKVSNIVVIGHSACGGIKGLMSFTFDG--NNSTDFIED-WVKIG 206
LK+ +I++ GH+ CGGI M+ G NN I D W K G
Sbjct: 88 LKIEHIIICGHTNCGGIHAAMADKDLGLINNWLLHIRDIWFKHG 131
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E2X|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E3F|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
pdb|3E3F|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
Length = 229
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 166 LKVSNIVVIGHSACGGIKGLMSFTFDG--NNSTDFIED-WVKIG 206
LK+ +I++ GH+ CGGI M+ G NN I D W K G
Sbjct: 88 LKIEHIIICGHTNCGGIHAAMADKDLGLINNWLLHIRDIWFKHG 131
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1V|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1W|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
pdb|3E1W|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
Length = 229
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 166 LKVSNIVVIGHSACGGIKGLMSFTFDG--NNSTDFIED-WVKIG 206
LK+ +I++ GH+ CGGI M+ G NN I D W K G
Sbjct: 88 LKIEHIIICGHTNCGGIHAAMADKDLGLINNWLLHIRDIWFKHG 131
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8D|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
Length = 229
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 166 LKVSNIVVIGHSACGGIKGLMSFTFDG--NNSTDFIED-WVKIG 206
LK+ +I++ GH+ CGGI M+ G NN I D W K G
Sbjct: 88 LKIEHIIICGHTNCGGIHAAMADKDLGLINNWLLHIRDIWFKHG 131
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
pdb|3E24|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
Length = 229
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 166 LKVSNIVVIGHSACGGIKGLMSFTFDG--NNSTDFIED-WVKIG 206
LK+ +I++ GH+ CGGI M+ G NN I D W K G
Sbjct: 88 LKIEHIIICGHTNCGGIHAAMADKDLGLINNWLLHIRDIWFKHG 131
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|C Chain C, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|D Chain D, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|E Chain E, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|F Chain F, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E2A|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2W|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
Length = 229
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 166 LKVSNIVVIGHSACGGIKGLMSFTFDG--NNSTDFIED-WVKIG 206
LK+ +I++ GH+ CGGI M+ G NN I D W K G
Sbjct: 88 LKIEHIIICGHTNCGGIHAAMADKDLGLINNWLLHIRDIWFKHG 131
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|B Chain B, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|C Chain C, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|D Chain D, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|E Chain E, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|F Chain F, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
Length = 221
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 166 LKVSNIVVIGHSACGGIKGLMSFTFDG--NNSTDFIED-WVKIG 206
LK+ +I++ GH+ CGGI M+ G NN I D W K G
Sbjct: 88 LKIEHIIICGHTNCGGIHAAMADKDLGLINNWLLHIRDIWFKHG 131
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
pdb|3QY1|B Chain B, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
Length = 223
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 166 LKVSNIVVIGHSACGGIK 183
L+V +I++ GHS CGGIK
Sbjct: 91 LEVEHIIICGHSGCGGIK 108
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 166 LKVSNIVVIGHSACGGIKGLMS 187
LKV+ +++ GH+ CGGIK ++
Sbjct: 97 LKVNKVIICGHTDCGGIKTCLT 118
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From
Mycobacterium Tuberculosis
Length = 215
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 166 LKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVK 204
L V IVV+GH +CG + ++ DG ++ D V+
Sbjct: 102 LNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDVVE 140
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|B Chain B, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|C Chain C, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|D Chain D, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
Length = 213
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 166 LKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVK 204
L V IVV+GH +CG + ++ DG ++ D V+
Sbjct: 100 LNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDVVE 138
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 207 IPAKSKVLTEHGDKPFGDQCTYCEK-EAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDF 265
+ AK + + H FG T C + +N L+ E +V++ AL+GG+ D
Sbjct: 139 VTAKLRWIERHEPAVFGAIATVCGSYDYINXLLTG--------ERVVDRNWALEGGFIDL 190
Query: 266 VNGSFELWGLDFSLSPPLSV 285
+G+ E + + PP +V
Sbjct: 191 ASGTVEADLVALAHIPPSAV 210
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
Length = 409
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 165 HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFG 223
H+ S + + S I L G N + ++++IG PAK+K + E KP G
Sbjct: 224 HVVASTLSDLYSSVAAAIAALKGPLHGGANEMA-VRNYLEIGTPAKAKEIVEAATKPGG 281
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 34 RLNSPASPPSLIRNEPVFAAPAPIINPNWRE 64
++ PP++I N P++A II P++ E
Sbjct: 269 KIKKAYCPPNVIENNPIYAYAKSIIFPSYNE 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,454,569
Number of Sequences: 62578
Number of extensions: 270818
Number of successful extensions: 654
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 29
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)