Query 023213
Match_columns 285
No_of_seqs 197 out of 1374
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:21:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 1.4E-82 2.9E-87 599.4 26.0 284 1-285 1-336 (347)
2 PLN03019 carbonic anhydrase 100.0 2.2E-56 4.8E-61 419.6 22.8 265 15-285 24-330 (330)
3 PLN00416 carbonate dehydratase 100.0 5.7E-48 1.2E-52 355.0 22.1 218 66-284 1-256 (258)
4 PLN03006 carbonate dehydratase 100.0 2E-45 4.4E-50 342.8 18.9 197 84-281 49-283 (301)
5 KOG1578 Predicted carbonic anh 100.0 1E-39 2.2E-44 298.2 14.9 222 43-276 2-260 (276)
6 PLN02154 carbonic anhydrase 100.0 1.9E-37 4.1E-42 287.8 19.1 170 109-278 70-275 (290)
7 PRK10437 carbonic anhydrase; P 100.0 1.3E-37 2.9E-42 280.5 17.0 161 114-279 3-197 (220)
8 PRK15219 carbonic anhydrase; P 100.0 5.9E-37 1.3E-41 280.3 17.6 161 108-273 50-244 (245)
9 cd00884 beta_CA_cladeB Carboni 100.0 5.1E-37 1.1E-41 271.4 14.7 152 121-273 1-190 (190)
10 cd00883 beta_CA_cladeA Carboni 100.0 9.4E-36 2E-40 261.4 14.6 147 122-273 1-182 (182)
11 COG0288 CynT Carbonic anhydras 100.0 1.6E-34 3.5E-39 258.5 15.7 164 113-279 2-201 (207)
12 cd03378 beta_CA_cladeC Carboni 100.0 4E-31 8.7E-36 226.8 13.9 120 111-273 1-154 (154)
13 PF00484 Pro_CA: Carbonic anhy 99.9 6.1E-27 1.3E-31 198.5 10.6 131 134-270 13-153 (153)
14 cd00382 beta_CA Carbonic anhyd 99.9 4.4E-24 9.6E-29 175.7 10.7 76 154-273 44-119 (119)
15 cd03379 beta_CA_cladeD Carboni 99.9 2.7E-21 5.9E-26 163.5 9.8 115 139-272 18-141 (142)
16 PF10070 DUF2309: Uncharacteri 72.3 7.6 0.00017 41.8 6.0 39 239-277 539-583 (788)
17 PF14618 DUF4452: Domain of un 65.5 5.8 0.00013 34.8 2.8 64 6-69 77-150 (165)
18 COG1254 AcyP Acylphosphatases 64.5 5.5 0.00012 31.6 2.3 20 255-274 29-48 (92)
19 PF05952 ComX: Bacillus compet 45.7 21 0.00047 26.0 2.6 26 236-261 4-29 (57)
20 PF12778 PXPV: PXPV repeat (3 42.5 14 0.00029 21.9 0.9 18 41-58 4-21 (22)
21 KOG1578 Predicted carbonic anh 40.9 8.6 0.00019 36.3 -0.1 104 157-260 97-234 (276)
22 COG1116 TauB ABC-type nitrate/ 39.6 17 0.00037 33.9 1.6 13 169-181 30-42 (248)
23 cd01891 TypA_BipA TypA (tyrosi 39.1 19 0.00041 30.8 1.7 14 167-180 1-14 (194)
24 PF00009 GTP_EFTU: Elongation 39.0 17 0.00037 31.0 1.5 15 167-181 2-16 (188)
25 PF00355 Rieske: Rieske [2Fe-2 38.0 13 0.00027 28.4 0.4 17 256-272 64-80 (97)
26 PRK14432 acylphosphatase; Prov 34.1 30 0.00065 27.2 2.0 20 255-274 27-46 (93)
27 PF07859 Abhydrolase_3: alpha/ 34.0 17 0.00038 31.0 0.7 33 155-187 52-89 (211)
28 cd04160 Arfrp1 Arfrp1 subfamil 33.7 22 0.00048 29.0 1.2 13 170-182 1-13 (167)
29 cd01890 LepA LepA subfamily. 33.5 23 0.0005 29.3 1.3 12 169-180 1-12 (179)
30 cd03528 Rieske_RO_ferredoxin R 32.3 17 0.00038 27.7 0.4 16 256-271 60-75 (98)
31 PRK14430 acylphosphatase; Prov 32.0 34 0.00074 26.8 2.0 19 255-273 29-47 (92)
32 cd03478 Rieske_AIFL_N AIFL (ap 31.7 16 0.00034 28.0 0.0 16 256-271 59-74 (95)
33 PRK14440 acylphosphatase; Prov 31.7 36 0.00079 26.5 2.1 19 255-273 28-46 (90)
34 cd01878 HflX HflX subfamily. 30.6 32 0.0007 29.4 1.8 15 167-181 40-54 (204)
35 KOG4387 Ornithine decarboxylas 30.2 46 0.001 29.8 2.7 24 153-176 119-142 (191)
36 PRK14423 acylphosphatase; Prov 30.0 46 0.001 26.0 2.4 19 255-273 30-48 (92)
37 PHA02244 ATPase-like protein 29.6 65 0.0014 32.0 3.9 13 170-182 121-133 (383)
38 PRK14445 acylphosphatase; Prov 29.6 49 0.0011 25.7 2.5 19 255-273 29-47 (91)
39 cd04321 ScAspRS_mt_like_N ScAs 29.0 61 0.0013 24.5 2.9 24 255-278 1-26 (86)
40 TIGR00312 cbiD cobalamin biosy 28.9 5.5E+02 0.012 25.2 10.1 27 151-178 216-243 (347)
41 TIGR01250 pro_imino_pep_2 prol 28.5 32 0.00069 29.6 1.4 28 159-186 86-113 (288)
42 PRK00075 cbiD cobalt-precorrin 28.5 5.8E+02 0.013 25.1 10.5 27 151-178 229-256 (361)
43 PRK13946 shikimate kinase; Pro 27.8 36 0.00079 29.2 1.6 25 160-184 2-26 (184)
44 cd04167 Snu114p Snu114p subfam 27.7 33 0.00072 30.0 1.4 12 169-180 1-12 (213)
45 cd04169 RF3 RF3 subfamily. Pe 27.4 38 0.00083 31.4 1.8 14 168-181 2-15 (267)
46 cd01887 IF2_eIF5B IF2/eIF5B (i 27.2 38 0.00081 27.5 1.6 12 169-180 1-12 (168)
47 PRK14448 acylphosphatase; Prov 27.2 46 0.00099 25.9 2.0 19 255-273 27-45 (90)
48 PRK14429 acylphosphatase; Prov 27.1 52 0.0011 25.6 2.2 19 255-273 27-45 (90)
49 PRK03592 haloalkane dehalogena 26.7 32 0.0007 31.0 1.2 29 158-186 82-110 (295)
50 PRK14451 acylphosphatase; Prov 26.3 50 0.0011 25.7 2.0 19 255-273 28-46 (89)
51 COG1806 Uncharacterized protei 26.2 94 0.002 29.5 4.1 64 110-181 86-157 (273)
52 TIGR02377 MocE_fam_FeS Rieske 25.9 28 0.00061 27.2 0.5 15 256-270 62-76 (101)
53 PRK14441 acylphosphatase; Prov 25.6 67 0.0014 25.2 2.6 20 254-273 29-48 (93)
54 cd03548 Rieske_RO_Alpha_OMO_CA 25.5 35 0.00076 28.3 1.1 18 256-273 76-93 (136)
55 PRK14426 acylphosphatase; Prov 25.2 57 0.0012 25.5 2.1 19 255-273 29-47 (92)
56 PRK14425 acylphosphatase; Prov 25.0 59 0.0013 25.6 2.2 19 255-273 31-49 (94)
57 TIGR02378 nirD_assim_sml nitri 24.4 29 0.00062 27.1 0.3 15 256-270 67-81 (105)
58 PRK14066 exodeoxyribonuclease 24.3 1.5E+02 0.0033 22.5 4.3 18 66-83 1-18 (75)
59 PRK14434 acylphosphatase; Prov 24.2 68 0.0015 25.1 2.4 19 255-273 27-46 (92)
60 PRK14449 acylphosphatase; Prov 24.0 66 0.0014 25.0 2.3 19 255-273 28-46 (90)
61 cd03529 Rieske_NirD Assimilato 23.9 28 0.0006 27.2 0.2 14 257-270 67-80 (103)
62 PRK09511 nirD nitrite reductas 23.8 26 0.00056 28.0 -0.0 15 256-270 70-84 (108)
63 cd01897 NOG NOG1 is a nucleola 23.8 48 0.001 26.9 1.6 14 169-182 1-14 (168)
64 PF08477 Miro: Miro-like prote 23.7 50 0.0011 25.3 1.6 12 170-181 1-12 (119)
65 PRK14420 acylphosphatase; Prov 23.7 64 0.0014 25.0 2.2 19 255-273 27-45 (91)
66 PRK14436 acylphosphatase; Prov 23.6 66 0.0014 25.1 2.3 19 255-273 29-47 (91)
67 cd01889 SelB_euk SelB subfamil 23.4 47 0.001 28.3 1.5 12 170-181 2-13 (192)
68 cd03530 Rieske_NirD_small_Baci 23.2 26 0.00057 26.9 -0.1 15 256-270 61-75 (98)
69 PLN02824 hydrolase, alpha/beta 23.1 40 0.00088 30.4 1.1 28 158-185 91-118 (294)
70 PF12697 Abhydrolase_6: Alpha/ 23.1 52 0.0011 26.8 1.7 32 155-186 52-83 (228)
71 COG0825 AccA Acetyl-CoA carbox 22.7 58 0.0012 31.4 2.0 31 153-183 91-121 (317)
72 PRK14446 acylphosphatase; Prov 22.7 84 0.0018 24.5 2.7 20 254-273 26-45 (88)
73 cd03474 Rieske_T4moC Toluene-4 22.6 35 0.00075 26.7 0.5 15 256-270 61-75 (108)
74 cd01862 Rab7 Rab7 subfamily. 22.6 52 0.0011 26.7 1.6 11 170-180 2-12 (172)
75 cd04170 EF-G_bact Elongation f 22.6 44 0.00095 30.4 1.2 11 170-180 1-11 (268)
76 PF00561 Abhydrolase_1: alpha/ 22.6 45 0.00097 27.9 1.2 31 154-184 29-59 (230)
77 COG2146 {NirD} Ferredoxin subu 22.5 36 0.00078 27.3 0.6 15 256-270 66-80 (106)
78 PF00708 Acylphosphatase: Acyl 22.4 68 0.0015 24.6 2.1 19 255-273 29-47 (91)
79 PRK14443 acylphosphatase; Prov 22.3 75 0.0016 25.1 2.4 20 255-274 29-48 (93)
80 PRK14444 acylphosphatase; Prov 22.3 68 0.0015 25.0 2.1 19 255-273 29-47 (92)
81 PF10500 SR-25: Nuclear RNA-sp 22.0 46 0.001 30.7 1.2 24 258-281 171-194 (225)
82 PRK14422 acylphosphatase; Prov 22.0 69 0.0015 25.1 2.1 19 255-273 31-49 (93)
83 PRK14433 acylphosphatase; Prov 22.0 70 0.0015 24.8 2.1 19 255-273 26-44 (87)
84 TIGR03100 hydr1_PEP hydrolase, 21.9 58 0.0013 29.6 1.9 21 154-174 110-130 (274)
85 PRK10566 esterase; Provisional 21.9 65 0.0014 28.1 2.1 15 167-181 105-119 (249)
86 cd03473 Rieske_CMP_Neu5Ac_hydr 21.8 34 0.00073 28.0 0.3 16 256-271 70-85 (107)
87 cd01883 EF1_alpha Eukaryotic e 21.6 47 0.001 29.3 1.2 11 170-180 1-11 (219)
88 PRK09965 3-phenylpropionate di 21.3 36 0.00079 26.8 0.3 14 257-270 63-76 (106)
89 cd04114 Rab30 Rab30 subfamily. 21.2 58 0.0012 26.5 1.6 14 169-182 8-21 (169)
90 PRK14437 acylphosphatase; Prov 20.9 70 0.0015 26.0 2.0 19 255-273 48-66 (109)
91 cd03467 Rieske Rieske domain; 20.4 36 0.00077 26.0 0.1 16 256-271 61-76 (98)
92 PRK14435 acylphosphatase; Prov 20.4 79 0.0017 24.6 2.1 19 255-273 27-45 (90)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=1.4e-82 Score=599.44 Aligned_cols=284 Identities=75% Similarity=1.131 Sum_probs=259.5
Q ss_pred CCcccccceeccccccccccccccCCCCc-eeEEeccC------------CCCCCCcccCCccccCCCCccCCchhhhhh
Q 023213 1 MSTASINNWCLTSVSQAQSSLIKSSTLRP-SIVARLNS------------PASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (285)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (285)
|||++|||||+||++++++++++ .++|| ++||+|++ +++||+||||+||||||+|||||+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 79 (347)
T PLN03014 1 MSTAPLSGFFLTSLSPSQSSLQK-LSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMG 79 (347)
T ss_pred CccccccceeccccCcccccccc-cccCCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhc
Confidence 99999999999999999999977 78899 89999961 133899999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHhhhcCchhHHhHhHHHHHHhhCCC--CCCChHHHHHHHHHHHHHHHhhhccCChHHHHhhcCCCC
Q 023213 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTP--SDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (285)
Q Consensus 68 ~~~~~~ai~~l~~ll~~~~~l~~~a~~~i~~~tael~~~--~~~tp~~~l~~L~~GN~rF~~~~~~~~p~~f~~La~GQ~ 145 (285)
++||||||++|+|||++|.+|+.+|++||+++|++|++. ....+++++++|++||+||+.+.+.+++++|++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~ 159 (347)
T PLN03014 80 TEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQS 159 (347)
T ss_pred hhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCCC
Confidence 999999999999999999999999999999999999863 225689999999999999999999999999999999999
Q ss_pred CceE------------------------ccc-------------CchhHHHHHHHHhcCCceEEEeccCCcccccccccc
Q 023213 146 PKYM------------------------TKY-------------AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 188 (285)
Q Consensus 146 P~~l------------------------~r~-------------~g~~aSLEYAV~~L~Vk~IVV~GHS~CGgVkAa~~~ 188 (285)
|+++ +|+ .++.++|||||.+|||++|||||||+||||+|+++.
T Consensus 160 P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~ 239 (347)
T PLN03014 160 PKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSF 239 (347)
T ss_pred CCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHhc
Confidence 9999 233 247899999999999999999999999999999986
Q ss_pred ccCCCCCchhHHHHHHhchhhhhhhhhhcCCCChhhhhhHHHHHHHHHHHHHHhcChHHHHHhhCCceEEEEEEEEccCC
Q 023213 189 TFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNG 268 (285)
Q Consensus 189 ~~~g~~~~~~I~~wl~~i~pa~~~~~~~~~~~~~~e~~~~~~~~NV~~qv~nL~~~P~I~~~v~~g~L~I~G~~YDi~tG 268 (285)
.+++....++|++|++.+.|++.++...+...++.++++.|+++||++|++||++||+|++++++|+|.|||||||++||
T Consensus 240 ~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G~~YDi~TG 319 (347)
T PLN03014 240 PLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFVKG 319 (347)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECCCc
Confidence 54444456899999999999998877666666777888889999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCCCCC
Q 023213 269 SFELWGLDFSLSPPLSV 285 (285)
Q Consensus 269 ~v~~l~~~~~~~~~~~~ 285 (285)
+|++|+.+++++|++++
T Consensus 320 ~V~~l~~~~~~~~~~~~ 336 (347)
T PLN03014 320 AFELWGLEFGLSETSSV 336 (347)
T ss_pred eEEEeccccccCCcccc
Confidence 99999999999999875
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=2.2e-56 Score=419.62 Aligned_cols=265 Identities=68% Similarity=0.975 Sum_probs=216.3
Q ss_pred ccccccccccCCCCceeEEeccCCCCCC---CcccCCccccCCCCccCCchhhhhhhccHHHHHHHHHHHHhhhcCchhH
Q 023213 15 SQAQSSLIKSSTLRPSIVARLNSPASPP---SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPV 91 (285)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~l~~ll~~~~~l~~~ 91 (285)
|-++.+.|- ++|||+---+|- --|| +-..|-+.+. ++ -..+.-.++|+++|||+||++|+|||++|.+|..+
T Consensus 24 ~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 98 (330)
T PLN03019 24 SKATKQYKY-PSLRPSHRLSLL--FLFPFHLSANGACFRCT-CF-SHFKLELRRMGNESYEDAIEALKKLLIEKDDLKDV 98 (330)
T ss_pred HHhhhhccC-CCcCccceeeee--hhhhhhHhhccccceee-cc-ccCchhhHHHhhhhHHHHHHHHHhhcccccccchH
Confidence 333333444 889997543322 1122 2233444443 22 11233345699999999999999999999999999
Q ss_pred HhHhHHHHHHhhCCC--CCCChHHHHHHHHHHHHHHHhhhccCChHHHHhhcCCCCCceE--------------------
Q 023213 92 AAAKVEQITAQLQTP--SDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYM-------------------- 149 (285)
Q Consensus 92 a~~~i~~~tael~~~--~~~tp~~~l~~L~~GN~rF~~~~~~~~p~~f~~La~GQ~P~~l-------------------- 149 (285)
|++||+++|+||++. ...++++++++|++||++|+.+.+.+++++|++|++||+|+++
T Consensus 99 ~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alvI~CsDSRV~Pe~Ifd~~pG 178 (330)
T PLN03019 99 AAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFHPG 178 (330)
T ss_pred HHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhhccCCCCCEEEEEecccCCCHHHHhCCCCC
Confidence 999999999999863 2356899999999999999999999999999999999999999
Q ss_pred ----ccc-------------CchhHHHHHHHHhcCCceEEEeccCCccccccccccccCCCCCchhHHHHHHhchhhhhh
Q 023213 150 ----TKY-------------AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSK 212 (285)
Q Consensus 150 ----~r~-------------~g~~aSLEYAV~~L~Vk~IVV~GHS~CGgVkAa~~~~~~g~~~~~~I~~wl~~i~pa~~~ 212 (285)
+|+ .++.++|||||.+|||++|||||||+||||+|+++..+++....++|++|++.+.|++.+
T Consensus 179 DlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkAal~~~~~g~~~~~~I~~wL~~i~pA~~~ 258 (330)
T PLN03019 179 DAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSK 258 (330)
T ss_pred ceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHHHHhccccCCccchHHHHHHHHHHHHHHH
Confidence 233 257899999999999999999999999999999986555444568999999999999987
Q ss_pred hhhhcCCCChhhhhhHHHHHHHHHHHHHHhcChHHHHHhhCCceEEEEEEEEccCCeEEEEeccCCCCCCCCC
Q 023213 213 VLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSPPLSV 285 (285)
Q Consensus 213 ~~~~~~~~~~~e~~~~~~~~NV~~qv~nL~~~P~I~~~v~~g~L~I~G~~YDi~tG~v~~l~~~~~~~~~~~~ 285 (285)
+....+..+++++++.|++ ||+.|++||++||+|+++|++|+|.||||+||++||+|++|+.+++++|+++|
T Consensus 259 v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~YDl~TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 259 VLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYYDFVNGSFELWELQFGISPVHSI 330 (330)
T ss_pred HhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECCCceEEEEccccCcCCCCcC
Confidence 6654444456677777776 99999999999999999999999999999999999999999999999999986
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=5.7e-48 Score=355.02 Aligned_cols=218 Identities=57% Similarity=0.974 Sum_probs=193.6
Q ss_pred hhhccHHHHHHHHHHHHhhhcCchhHHhHhHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHhhhccCChHHHHhhcCCCC
Q 023213 66 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (285)
Q Consensus 66 ~~~~~~~~ai~~l~~ll~~~~~l~~~a~~~i~~~tael~~~~~~tp~~~l~~L~~GN~rF~~~~~~~~p~~f~~La~GQ~ 145 (285)
||.+||+.+|.+|.+||+.+..++.++++++..++++|++.. .+|.+++++|++||+||+.+++.+++++|+.|+.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 789999999999999999999999999999999999999974 7899999999999999999999889999999999999
Q ss_pred CceE------------------------ccc-------------CchhHHHHHHHHhcCCceEEEeccCCcccccccccc
Q 023213 146 PKYM------------------------TKY-------------AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 188 (285)
Q Consensus 146 P~~l------------------------~r~-------------~g~~aSLEYAV~~L~Vk~IVV~GHS~CGgVkAa~~~ 188 (285)
|+++ +|+ .++.+||||||.+|||++|||||||+||||+|+++.
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~ 159 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSI 159 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhc
Confidence 9999 333 257799999999999999999999999999999874
Q ss_pred ccCC-CCCchhHHHHHHhchhhhhhhhhhcCCCChhhhhhHHHHHHHHHHHHHHhcChHHHHHhhCCceEEEEEEEEccC
Q 023213 189 TFDG-NNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVN 267 (285)
Q Consensus 189 ~~~g-~~~~~~I~~wl~~i~pa~~~~~~~~~~~~~~e~~~~~~~~NV~~qv~nL~~~P~I~~~v~~g~L~I~G~~YDi~t 267 (285)
.+.. ....+++..|++.+.|++..........++.++++.++++||+.|+++|++||+|++++++|+|.||||+||++|
T Consensus 160 ~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~T 239 (258)
T PLN00416 160 EDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVK 239 (258)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCC
Confidence 3221 122468999999999988766554444556667778899999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCCCCC
Q 023213 268 GSFELWGLDFSLSPPLS 284 (285)
Q Consensus 268 G~v~~l~~~~~~~~~~~ 284 (285)
|+|++|+.+++.+|...
T Consensus 240 G~v~~~~~~~~~~p~~~ 256 (258)
T PLN00416 240 GTFDLWELDFKTTPAFA 256 (258)
T ss_pred ceEEEeccCcCCCCCcc
Confidence 99999999999888653
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=2e-45 Score=342.82 Aligned_cols=197 Identities=37% Similarity=0.689 Sum_probs=172.9
Q ss_pred hhcCchhHHhHhHHHHHHhhCCCC--CCChHHHHHHHHHHHHHHHhhhccCChHHHHhhcCCCCCceE------------
Q 023213 84 EKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYM------------ 149 (285)
Q Consensus 84 ~~~~l~~~a~~~i~~~tael~~~~--~~tp~~~l~~L~~GN~rF~~~~~~~~p~~f~~La~GQ~P~~l------------ 149 (285)
+..+|+.+|++|++++|+||++.. ...+++++++|++||.+|+..++.+++++|++|++||+|+++
T Consensus 49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe 128 (301)
T PLN03006 49 KATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPS 128 (301)
T ss_pred cccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHH
Confidence 345788999999999999998653 234789999999999999999999999999999999999999
Q ss_pred ------------ccc------------CchhHHHHHHHHhcCCceEEEeccCCccccccccccccCCCCCchhHHHHHHh
Q 023213 150 ------------TKY------------AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKI 205 (285)
Q Consensus 150 ------------~r~------------~g~~aSLEYAV~~L~Vk~IVV~GHS~CGgVkAa~~~~~~g~~~~~~I~~wl~~ 205 (285)
+|+ .|+.++|||||.+|||++|||||||+||||+|+++..+.+ ...++|+.|+..
T Consensus 129 ~Ifd~~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g-~~~~~I~~wv~~ 207 (301)
T PLN03006 129 AVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEG-DSRSFIHNWVVV 207 (301)
T ss_pred HHhCCCCCCEEEEeccccccCCccccccchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccC-CchhHHHHHHHH
Confidence 333 2478999999999999999999999999999999865544 346899999999
Q ss_pred chhhhhhhhhhcCCCChhhhhhHHHHHHHHHHHHHHhcChHHHHHhhCCceEEEEEEEEccCCeEEEEeccCCCCC
Q 023213 206 GIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSP 281 (285)
Q Consensus 206 i~pa~~~~~~~~~~~~~~e~~~~~~~~NV~~qv~nL~~~P~I~~~v~~g~L~I~G~~YDi~tG~v~~l~~~~~~~~ 281 (285)
+.+++..+........++++++.|+++||+.|++||++||+|++++++|+|.|||||||++||+|+.|+++++++-
T Consensus 208 ~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~~~~~ 283 (301)
T PLN03006 208 GKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDYAASR 283 (301)
T ss_pred HHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEecccccccc
Confidence 9998877654433445778888999999999999999999999999999999999999999999999999997653
No 5
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-39 Score=298.15 Aligned_cols=222 Identities=44% Similarity=0.681 Sum_probs=208.2
Q ss_pred CcccCCccccCCCCccCCchhhhhhhccHHHHHHHHHHHHhhhcCchhHHhHhHHHHHHhhCCCCCCChHHHHHHHHHHH
Q 023213 43 SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGF 122 (285)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~l~~ll~~~~~l~~~a~~~i~~~tael~~~~~~tp~~~l~~L~~GN 122 (285)
.|+|+.+.|+.+.+.+.+-+.++|.+.+|+.++.+..++|..+-++ ++++|+++++++ .+.++++++||
T Consensus 2 ~i~~~~~~~~~t~~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~F 70 (276)
T KOG1578|consen 2 EILRGVIRFRNTTRKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMF 70 (276)
T ss_pred ccccccchhhhhhHHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhH
Confidence 3889999999999999998889999999999999999999999999 999999999993 47789999999
Q ss_pred HHHHhhhccCChHHHHhhcCCCCCceE-------------------------------------cccCchhHHHHHHHHh
Q 023213 123 IHFKREKYEKNPALYSELAKGQSPKYM-------------------------------------TKYAGVGAAVEYAVLH 165 (285)
Q Consensus 123 ~rF~~~~~~~~p~~f~~La~GQ~P~~l-------------------------------------~r~~g~~aSLEYAV~~ 165 (285)
-.|..+++..+|.+|..+++||+|++| .++.++.|+|||||.+
T Consensus 71 v~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 71 VVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred hhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 999999999999999999999999999 2345689999999999
Q ss_pred cCCceEEEeccCCccccccccccccCCCCCchhHHHHHHhchhhhhhhhhhcCCCChhhhhhHHHHHHHHHHHHHHhcCh
Q 023213 166 LKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYP 245 (285)
Q Consensus 166 L~Vk~IVV~GHS~CGgVkAa~~~~~~g~~~~~~I~~wl~~i~pa~~~~~~~~~~~~~~e~~~~~~~~NV~~qv~nL~~~P 245 (285)
|||++|+||||++||||+++|....++. ...|+.+|+.+..+++..+.+....+++++||..|+.+.+..++.||.+||
T Consensus 151 lkvenIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~ 229 (276)
T KOG1578|consen 151 LKVENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYP 229 (276)
T ss_pred hccceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 9999999999999999999999776655 678999999999999988888888899999999999999999999999999
Q ss_pred HHHHHhhCCceEEEEEEEEccCCeEEEEecc
Q 023213 246 FVREGLVNKTLALKGGYYDFVNGSFELWGLD 276 (285)
Q Consensus 246 ~I~~~v~~g~L~I~G~~YDi~tG~v~~l~~~ 276 (285)
++++++.+|.+.+||++||+.+|.+++|.+|
T Consensus 230 ~vr~~v~k~~l~~~G~~Y~fskg~~~~~~ld 260 (276)
T KOG1578|consen 230 FVREAVVKGFLQVHGGYYNFSKGTKEFWELD 260 (276)
T ss_pred HHHHHHhhcceeeeeeeEEeccCceeEEEec
Confidence 9999999999999999999999999999999
No 6
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=1.9e-37 Score=287.85 Aligned_cols=170 Identities=35% Similarity=0.659 Sum_probs=144.4
Q ss_pred CChHHHHHHHHHHHHHHHhhhccCChHHHHhhcCCCCCceE------------------------ccc------------
Q 023213 109 TKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYM------------------------TKY------------ 152 (285)
Q Consensus 109 ~tp~~~l~~L~~GN~rF~~~~~~~~p~~f~~La~GQ~P~~l------------------------~r~------------ 152 (285)
.+..+.+++|++||++|+.+++.+++++|++|+.||+|+++ +|+
T Consensus 70 ~~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g~ 149 (290)
T PLN02154 70 ETSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNGP 149 (290)
T ss_pred chhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCCc
Confidence 34567899999999999999999999999999999999999 232
Q ss_pred CchhHHHHHHHHhcCCceEEEeccCCccccccccccccCCCCCchhHHHHHHhchhhhhhhhhhcCCCChhhhhhHHHHH
Q 023213 153 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKE 232 (285)
Q Consensus 153 ~g~~aSLEYAV~~L~Vk~IVV~GHS~CGgVkAa~~~~~~g~~~~~~I~~wl~~i~pa~~~~~~~~~~~~~~e~~~~~~~~ 232 (285)
.++.++|||||.+|||++|||||||+||||+|+++.........+++++|+..+.+++.+.....+..++++.++.++++
T Consensus 150 ~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~ 229 (290)
T PLN02154 150 TETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKE 229 (290)
T ss_pred cchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 25788999999999999999999999999999997532222335799999988877765443323334556777889999
Q ss_pred HHHHHHHHHhcChHHHHHhhCCceEEEEEEEEccCCeEEEEeccCC
Q 023213 233 AVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFS 278 (285)
Q Consensus 233 NV~~qv~nL~~~P~I~~~v~~g~L~I~G~~YDi~tG~v~~l~~~~~ 278 (285)
||+.|++||++||+|++++++|+|.||||+||++||+|+.|+.+.+
T Consensus 230 NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~ 275 (290)
T PLN02154 230 SIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD 275 (290)
T ss_pred HHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC
Confidence 9999999999999999999999999999999999999999998763
No 7
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.3e-37 Score=280.45 Aligned_cols=161 Identities=18% Similarity=0.295 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHhhhccCChHHHHhhcCCCCCceE------------------------ccc---------CchhHHHH
Q 023213 114 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYM------------------------TKY---------AGVGAAVE 160 (285)
Q Consensus 114 ~l~~L~~GN~rF~~~~~~~~p~~f~~La~GQ~P~~l------------------------~r~---------~g~~aSLE 160 (285)
.+++|++||++|+.+.+..++++|++|+.||+|+++ +|+ .++.++||
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~le 82 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQ 82 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCcchHHHHH
Confidence 478999999999999988899999999999999999 343 34789999
Q ss_pred HHHHhcCCceEEEeccCCccccccccccccCCCCCchhHHHHHHhchhhhhhhhhhcCCCChhhhhhHHHHHHHHHHHHH
Q 023213 161 YAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSN 240 (285)
Q Consensus 161 YAV~~L~Vk~IVV~GHS~CGgVkAa~~~~~~g~~~~~~I~~wl~~i~pa~~~~~~~~~~~~~~e~~~~~~~~NV~~qv~n 240 (285)
|||.+|||++|||||||+||||+|+++... .++++.|+..+.+++..........+.+++++.+++.||+.|+++
T Consensus 83 yAV~~L~v~~IvV~GHt~CG~V~Aal~~~~-----~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~qv~~ 157 (220)
T PRK10437 83 YAVDVLEVEHIIICGHYGCGGVQAAVENPE-----LGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYN 157 (220)
T ss_pred HHHHHcCCCEEEEeCCCCchHHHHHHcCCC-----cccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997432 378999999999998765544445556677888999999999999
Q ss_pred HhcChHHHHHhhCC-ceEEEEEEEEccCCeEEEEeccCCC
Q 023213 241 LLTYPFVREGLVNK-TLALKGGYYDFVNGSFELWGLDFSL 279 (285)
Q Consensus 241 L~~~P~I~~~v~~g-~L~I~G~~YDi~tG~v~~l~~~~~~ 279 (285)
|+++|+|++++++| +|.||||+||++||.|+.++.....
T Consensus 158 L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~ 197 (220)
T PRK10437 158 LGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATN 197 (220)
T ss_pred HhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCc
Confidence 99999999999999 6999999999999999998876543
No 8
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=5.9e-37 Score=280.28 Aligned_cols=161 Identities=19% Similarity=0.293 Sum_probs=134.7
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCChHHH--HhhcCCCCCceE------------------------cccC------ch
Q 023213 108 DTKAFDSVERIKEGFIHFKREKYEKNPALY--SELAKGQSPKYM------------------------TKYA------GV 155 (285)
Q Consensus 108 ~~tp~~~l~~L~~GN~rF~~~~~~~~p~~f--~~La~GQ~P~~l------------------------~r~~------g~ 155 (285)
..+|++++++|++||+||+++.+.....++ .++++||+|+++ +|+. .+
T Consensus 50 ~~~p~~al~~L~~GN~rF~~~~~~~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~~~ 129 (245)
T PRK15219 50 KMTPDQIIESLKQGNKRFRSGKPAQHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISNDDL 129 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcCCchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCcch
Confidence 378999999999999999999875333333 346899999999 3544 37
Q ss_pred hHHHHHHHHhcCCceEEEeccCCccccccccccccCCCCCchhHHHHHHhchhhhhhhhhhc-CCCChhhhhhHHHHHHH
Q 023213 156 GAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEH-GDKPFGDQCTYCEKEAV 234 (285)
Q Consensus 156 ~aSLEYAV~~L~Vk~IVV~GHS~CGgVkAa~~~~~~g~~~~~~I~~wl~~i~pa~~~~~~~~-~~~~~~e~~~~~~~~NV 234 (285)
.+||||||.+|||++|||||||+||||+|+++... .+++..|++.++|++....... ...+.++.++.++++||
T Consensus 130 ~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~~NV 204 (245)
T PRK15219 130 LGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVDAVARKNV 204 (245)
T ss_pred hhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999997532 3689999999999987653221 11134566788999999
Q ss_pred HHHHHHHhc-ChHHHHHhhCCceEEEEEEEEccCCeEEEE
Q 023213 235 NVSLSNLLT-YPFVREGLVNKTLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 235 ~~qv~nL~~-~P~I~~~v~~g~L~I~G~~YDi~tG~v~~l 273 (285)
+.|+++|++ +|++++++++|+|+||||+||++||+|+++
T Consensus 205 ~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 205 ELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 999999996 899999999999999999999999999986
No 9
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=5.1e-37 Score=271.37 Aligned_cols=152 Identities=48% Similarity=0.740 Sum_probs=132.6
Q ss_pred HHHHHHhhhccCChHHHHhhcCCCCCceE------------------------ccc--------------CchhHHHHHH
Q 023213 121 GFIHFKREKYEKNPALYSELAKGQSPKYM------------------------TKY--------------AGVGAAVEYA 162 (285)
Q Consensus 121 GN~rF~~~~~~~~p~~f~~La~GQ~P~~l------------------------~r~--------------~g~~aSLEYA 162 (285)
||++|+...+..++++|++|++||+|+++ +|+ .++.++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 79999999988999999999999999999 233 2467999999
Q ss_pred HHhcCCceEEEeccCCccccccccccccCCCCCchhHHHHHHhchhhhhhhhhhcCCCChhhhhhHHHHHHHHHHHHHHh
Q 023213 163 VLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLL 242 (285)
Q Consensus 163 V~~L~Vk~IVV~GHS~CGgVkAa~~~~~~g~~~~~~I~~wl~~i~pa~~~~~~~~~~~~~~e~~~~~~~~NV~~qv~nL~ 242 (285)
|.+|||++|||||||+||||+|+++... +....+++..|+..+.+++..........+..+..+.+++.||..|+++|+
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987543 123357999999999999987665544445566778899999999999999
Q ss_pred cChHHHHHhhCCceEEEEEEEEccCCeEEEE
Q 023213 243 TYPFVREGLVNKTLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 243 ~~P~I~~~v~~g~L~I~G~~YDi~tG~v~~l 273 (285)
++|+|++++++|+|.||||+||+.||+|+.+
T Consensus 160 ~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 9999999999999999999999999999764
No 10
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=9.4e-36 Score=261.44 Aligned_cols=147 Identities=25% Similarity=0.408 Sum_probs=126.9
Q ss_pred HHHHHhhhccCChHHHHhhcCCCCCceE------------------------cccC---------chhHHHHHHHHhcCC
Q 023213 122 FIHFKREKYEKNPALYSELAKGQSPKYM------------------------TKYA---------GVGAAVEYAVLHLKV 168 (285)
Q Consensus 122 N~rF~~~~~~~~p~~f~~La~GQ~P~~l------------------------~r~~---------g~~aSLEYAV~~L~V 168 (285)
|++|+.+.+.++|++|++|+.||+|+++ +|++ ++.+||||||.+|||
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~~~~asleyAv~~L~v 80 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDLNCLSVLQYAVDVLKV 80 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCcchhhhHHHHHHhcCC
Confidence 7899999999999999999999999999 3443 478999999999999
Q ss_pred ceEEEeccCCccccccccccccCCCCCchhHHHHHHhchhhhhhhhhhcCCC-ChhhhhhHHHHHHHHHHHHHHhcChHH
Q 023213 169 SNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDK-PFGDQCTYCEKEAVNVSLSNLLTYPFV 247 (285)
Q Consensus 169 k~IVV~GHS~CGgVkAa~~~~~~g~~~~~~I~~wl~~i~pa~~~~~~~~~~~-~~~e~~~~~~~~NV~~qv~nL~~~P~I 247 (285)
++|||||||+||||+|+++.. ..+++..|++.+.+++.......... +.++..+.++++||+.|+++|++||+|
T Consensus 81 ~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i 155 (182)
T cd00883 81 KHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCKTPIV 155 (182)
T ss_pred CEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 999999999999999998743 24789999999888776544322222 445667789999999999999999999
Q ss_pred HHHhhC-CceEEEEEEEEccCCeEEEE
Q 023213 248 REGLVN-KTLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 248 ~~~v~~-g~L~I~G~~YDi~tG~v~~l 273 (285)
++++++ |+|.||||+||++||+|+.+
T Consensus 156 ~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 156 QDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred HHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 999999 99999999999999998753
No 11
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=258.53 Aligned_cols=164 Identities=29% Similarity=0.426 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHhhhccCChHHHHhhc-CCCCCceE------------------------ccc---------CchhHH
Q 023213 113 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYM------------------------TKY---------AGVGAA 158 (285)
Q Consensus 113 ~~l~~L~~GN~rF~~~~~~~~p~~f~~La-~GQ~P~~l------------------------~r~---------~g~~aS 158 (285)
..+++|++||++|.++.+..++.+|+.|+ .||+|+++ +|+ .++++|
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~~~~l~s 81 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPDGSVLRS 81 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCccchhHH
Confidence 46899999999999999888999999875 67999999 333 368999
Q ss_pred HHHHHHhcCCceEEEeccCCccccccccccccCCCCCchhHHHHHHhchhhhhhhhhhcCCCChh-hhhhHHHHHHHHHH
Q 023213 159 VEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFG-DQCTYCEKEAVNVS 237 (285)
Q Consensus 159 LEYAV~~L~Vk~IVV~GHS~CGgVkAa~~~~~~g~~~~~~I~~wl~~i~pa~~~~~~~~~~~~~~-e~~~~~~~~NV~~q 237 (285)
|||||.+|||++||||||++||||+|+++....+.. ++..|+..+.+............... ++....++.||+.|
T Consensus 82 leyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~nV~~q 158 (207)
T COG0288 82 LEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDNVREQ 158 (207)
T ss_pred HHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999986654432 69999988888776554433322222 56667788999999
Q ss_pred HHHHhcChHHHHHhhCCc-eEEEEEEEEccCCeEEEEeccCCC
Q 023213 238 LSNLLTYPFVREGLVNKT-LALKGGYYDFVNGSFELWGLDFSL 279 (285)
Q Consensus 238 v~nL~~~P~I~~~v~~g~-L~I~G~~YDi~tG~v~~l~~~~~~ 279 (285)
+++|+++|.|++++..|+ |.||||+||++||+++.++.....
T Consensus 159 v~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~ 201 (207)
T COG0288 159 VANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATID 201 (207)
T ss_pred HHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccc
Confidence 999999999999988877 999999999999999888776543
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.97 E-value=4e-31 Score=226.81 Aligned_cols=120 Identities=32% Similarity=0.466 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHHHHhhhcc---CChHHHHhhcCCCCCceE------------------------cccC------chhH
Q 023213 111 AFDSVERIKEGFIHFKREKYE---KNPALYSELAKGQSPKYM------------------------TKYA------GVGA 157 (285)
Q Consensus 111 p~~~l~~L~~GN~rF~~~~~~---~~p~~f~~La~GQ~P~~l------------------------~r~~------g~~a 157 (285)
|++++++|++||++|.++.+. .+++.|.+|++||+|+++ +|+. ++.+
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~~~~~ 80 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDDDVLG 80 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccChhHHH
Confidence 578999999999999998643 126679999999999999 3543 3789
Q ss_pred HHHHHHHhcCCceEEEeccCCccccccccccccCCCCCchhHHHHHHhchhhhhhhhhhcCCCChhhhhhHHHHHHHHHH
Q 023213 158 AVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVS 237 (285)
Q Consensus 158 SLEYAV~~L~Vk~IVV~GHS~CGgVkAa~~~~~~g~~~~~~I~~wl~~i~pa~~~~~~~~~~~~~~e~~~~~~~~NV~~q 237 (285)
||||||.+|||++|||||||+|||++++ ++++||+.|
T Consensus 81 sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~~~nV~~~ 117 (154)
T cd03378 81 SLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AVRANVKAT 117 (154)
T ss_pred HHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HHHHHHHHH
Confidence 9999999999999999999999999986 366899999
Q ss_pred HHHHhcChHHHH-HhhCCceEEEEEEEEccCCeEEEE
Q 023213 238 LSNLLTYPFVRE-GLVNKTLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 238 v~nL~~~P~I~~-~v~~g~L~I~G~~YDi~tG~v~~l 273 (285)
+++|+++|+|++ ++++|+|.||||+||++||+|+++
T Consensus 118 v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 118 VAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 999999999988 999999999999999999999874
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=99.94 E-value=6.1e-27 Score=198.47 Aligned_cols=131 Identities=27% Similarity=0.413 Sum_probs=99.7
Q ss_pred hHHHHhhcCCCCCceEcccCc---------hhHHHHHHHHhcCCceEEEeccCCccccccccccccCCCCCchhHHHHHH
Q 023213 134 PALYSELAKGQSPKYMTKYAG---------VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVK 204 (285)
Q Consensus 134 p~~f~~La~GQ~P~~l~r~~g---------~~aSLEYAV~~L~Vk~IVV~GHS~CGgVkAa~~~~~~g~~~~~~I~~wl~ 204 (285)
|+.+-.+..|.- +++|++| +++|||||+.+|||++|+|||||+|||++++++... ..+++++|++
T Consensus 13 ~~~~~~~~~Gd~--fviRnaGn~v~~~~~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~----~~~~l~~~l~ 86 (153)
T PF00484_consen 13 PEEIFGLKPGDL--FVIRNAGNRVPPPDDSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE----EDGFLRDWLQ 86 (153)
T ss_dssp HHHHHTS-TTSE--EEEEETTG---TT-HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH----TCSHHHHHHH
T ss_pred HHHHhCCCCcce--eeeeEEeeecCccccchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc----ccchHHHHHH
Confidence 444434444542 3456554 689999999999999999999999999999877322 2479999999
Q ss_pred hchhhhhhh-hhhcCCCChhhhhhHHHHHHHHHHHHHHhcChHHHHHhhCCceEEEEEEEEccCCeE
Q 023213 205 IGIPAKSKV-LTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSF 270 (285)
Q Consensus 205 ~i~pa~~~~-~~~~~~~~~~e~~~~~~~~NV~~qv~nL~~~P~I~~~v~~g~L~I~G~~YDi~tG~v 270 (285)
.+.++.... ..........+....++++||+.|+++|+++|+|++++++|+|.||||+||++||+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~v 153 (153)
T PF00484_consen 87 KIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGKV 153 (153)
T ss_dssp HHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTEE
T ss_pred hhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCccC
Confidence 999988763 322222222334445589999999999999999999999999999999999999985
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.91 E-value=4.4e-24 Score=175.74 Aligned_cols=76 Identities=36% Similarity=0.589 Sum_probs=71.9
Q ss_pred chhHHHHHHHHhcCCceEEEeccCCccccccccccccCCCCCchhHHHHHHhchhhhhhhhhhcCCCChhhhhhHHHHHH
Q 023213 154 GVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEA 233 (285)
Q Consensus 154 g~~aSLEYAV~~L~Vk~IVV~GHS~CGgVkAa~~~~~~g~~~~~~I~~wl~~i~pa~~~~~~~~~~~~~~e~~~~~~~~N 233 (285)
++++|||||+.+|||++|+|||||+|||+++ ++++|
T Consensus 44 ~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a--------------------------------------------~~~~n 79 (119)
T cd00382 44 DVLASLEYAVEVLGVKHIIVCGHTDCGAVKA--------------------------------------------LVEEN 79 (119)
T ss_pred cHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--------------------------------------------HHHHH
Confidence 5889999999999999999999999999997 35689
Q ss_pred HHHHHHHHhcChHHHHHhhCCceEEEEEEEEccCCeEEEE
Q 023213 234 VNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 234 V~~qv~nL~~~P~I~~~v~~g~L~I~G~~YDi~tG~v~~l 273 (285)
|+.|+++|++||+++++++.+++.||||+||++||+++++
T Consensus 80 V~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~tG~v~~~ 119 (119)
T cd00382 80 VREQVENLRSHPLIQEAVAPGELKVHGWVYDIETGKLEVL 119 (119)
T ss_pred HHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECCCCEEEeC
Confidence 9999999999999999999999999999999999999864
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.85 E-value=2.7e-21 Score=163.52 Aligned_cols=115 Identities=23% Similarity=0.242 Sum_probs=82.1
Q ss_pred hhcCCCCCce--EcccCc------hhHHHHHHHHhcCCceEEEeccCCccccccccccccCCCCCchhHHHHHHh-chhh
Q 023213 139 ELAKGQSPKY--MTKYAG------VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKI-GIPA 209 (285)
Q Consensus 139 ~La~GQ~P~~--l~r~~g------~~aSLEYAV~~L~Vk~IVV~GHS~CGgVkAa~~~~~~g~~~~~~I~~wl~~-i~pa 209 (285)
++.-|+.|-= ++|++| +++|||||+.+||+++|+|||||+|||++++.+ .+..|+.. ..+.
T Consensus 18 e~i~~~~~GdlfviRnaGn~V~~~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~~----------~~~~~~~~~~~~~ 87 (142)
T cd03379 18 EKALGLKLGDAKVIRNAGGRVTDDAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTDE----------ELKEKMKERGIAE 87 (142)
T ss_pred HHHcCCCCCcEEEEeccCCccCHhHHHHHHHHHHHhCCCEEEEEeecCCcceEecHH----------HHHHHHHHhcCcc
Confidence 3444555522 256654 779999999999999999999999999998754 24456653 1111
Q ss_pred hhhhhhhcCCCChhhhhhHHHHHHHHHHHHHHhcChHHHHHhhCCceEEEEEEEEccCCeEEE
Q 023213 210 KSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFEL 272 (285)
Q Consensus 210 ~~~~~~~~~~~~~~e~~~~~~~~NV~~qv~nL~~~P~I~~~v~~g~L~I~G~~YDi~tG~v~~ 272 (285)
..... ...........+++||+.|+++|+++|+|++ +++||||+||++||+++.
T Consensus 88 -~~~~~---~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~tG~v~~ 141 (142)
T cd03379 88 -AYGGI---DKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVKTGKLTE 141 (142)
T ss_pred -hhccc---CcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECCCCEEEe
Confidence 00000 0111111234678999999999999999996 899999999999999875
No 16
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=72.27 E-value=7.6 Score=41.82 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=30.4
Q ss_pred HHHhcChHHHHHhhCCc------eEEEEEEEEccCCeEEEEeccC
Q 023213 239 SNLLTYPFVREGLVNKT------LALKGGYYDFVNGSFELWGLDF 277 (285)
Q Consensus 239 ~nL~~~P~I~~~v~~g~------L~I~G~~YDi~tG~v~~l~~~~ 277 (285)
..|++.|-||+.+++.. -..+|+.+|-.|-+|++++.+.
T Consensus 539 A~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 539 AALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 44566777777777654 4569999999999999998774
No 17
>PF14618 DUF4452: Domain of unknown function (DUF4452)
Probab=65.54 E-value=5.8 Score=34.77 Aligned_cols=64 Identities=25% Similarity=0.288 Sum_probs=37.0
Q ss_pred ccceeccccccccccccccCCCCceeEEeccCC-CCCCCc------ccC---CccccCCCCccCCchhhhhhhc
Q 023213 6 INNWCLTSVSQAQSSLIKSSTLRPSIVARLNSP-ASPPSL------IRN---EPVFAAPAPIINPNWREDMANQ 69 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~ 69 (285)
-|-..++|.||.++...--.+..|.+.-.-.++ ..+|.. --- -|--+++.|||+|.+++.|++=
T Consensus 77 s~rsSlsS~SP~~SP~q~~~~~~~~~sl~~~s~~~~~p~~~~~~~~klhqpsa~R~RnaIpIVNP~Tgm~vsSP 150 (165)
T PF14618_consen 77 SNRSSLSSNSPSSSPTQHQIQPTPSFSLSSASPPFQPPRYTQQNNLKLHQPSAPRTRNAIPIVNPSTGMRVSSP 150 (165)
T ss_pred cCccccccCCCCCCccccccccCCCcccCCCCCCcCCCcccccccccccCCccccccCccceeCCCCCCccCCC
Confidence 445788888998777663233334333222221 113333 111 2345689999999999888753
No 18
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=64.48 E-value=5.5 Score=31.60 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=17.6
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 023213 255 TLALKGGYYDFVNGSFELWG 274 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l~ 274 (285)
++.|+||+++..+|+|+.+-
T Consensus 29 ~lgl~G~V~N~~DGsVeiva 48 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIVA 48 (92)
T ss_pred HCCCEEEEEECCCCeEEEEE
Confidence 57799999999999998763
No 19
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=45.74 E-value=21 Score=25.98 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=22.9
Q ss_pred HHHHHHhcChHHHHHhhCCceEEEEE
Q 023213 236 VSLSNLLTYPFVREGLVNKTLALKGG 261 (285)
Q Consensus 236 ~qv~nL~~~P~I~~~v~~g~L~I~G~ 261 (285)
.-|..|.+||-+-+.+++|++.+.|.
T Consensus 4 ~iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 4 EIVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHHChHHHHHHHcCCeeEecC
Confidence 34778889999999999999999985
No 20
>PF12778 PXPV: PXPV repeat (3 copies)
Probab=42.51 E-value=14 Score=21.95 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=12.7
Q ss_pred CCCcccCCccccCCCCcc
Q 023213 41 PPSLIRNEPVFAAPAPII 58 (285)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~ 58 (285)
.|..++-+||..||.|.+
T Consensus 4 ~PVy~~PaPVyvaP~P~~ 21 (22)
T PF12778_consen 4 APVYVAPAPVYVAPAPVY 21 (22)
T ss_pred CCEEeccCceeecCCCcc
Confidence 466677778887777753
No 21
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=40.89 E-value=8.6 Score=36.34 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCceEEEeccCCcccccccccccc--CCC---CCchhHHHHHHhchhhh---------hhhhhhc-----
Q 023213 157 AAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF--DGN---NSTDFIEDWVKIGIPAK---------SKVLTEH----- 217 (285)
Q Consensus 157 aSLEYAV~~L~Vk~IVV~GHS~CGgVkAa~~~~~--~g~---~~~~~I~~wl~~i~pa~---------~~~~~~~----- 217 (285)
++|+-|+..-...||+||||+.|-+|+...+... +.. .-...++-||....-.. .-.+..+
T Consensus 97 l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~~~~ 176 (276)
T KOG1578|consen 97 LALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSLCGGIKGLMSFSLE 176 (276)
T ss_pred eEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEeccccCCchhhccccccc
Confidence 4677888888999999999999999997655432 111 12367899987532110 0000000
Q ss_pred -CC---------CChhhh---hhHHHHHHHHHHHHHHhcChHHH--HHhhCCceEEEE
Q 023213 218 -GD---------KPFGDQ---CTYCEKEAVNVSLSNLLTYPFVR--EGLVNKTLALKG 260 (285)
Q Consensus 218 -~~---------~~~~e~---~~~~~~~NV~~qv~nL~~~P~I~--~~v~~g~L~I~G 260 (285)
+. .+..+. .+.+...|..+|..|..++.+.. .++.....-+++
T Consensus 177 ~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~ 234 (276)
T KOG1578|consen 177 APSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREA 234 (276)
T ss_pred CcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 00 111111 12445668899999999877766 444455555555
No 22
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=39.62 E-value=17 Score=33.91 Aligned_cols=13 Identities=31% Similarity=0.805 Sum_probs=11.2
Q ss_pred ceEEEeccCCccc
Q 023213 169 SNIVVIGHSACGG 181 (285)
Q Consensus 169 k~IVV~GHS~CGg 181 (285)
+-|.|+|||+||=
T Consensus 30 EfvsilGpSGcGK 42 (248)
T COG1116 30 EFVAILGPSGCGK 42 (248)
T ss_pred CEEEEECCCCCCH
Confidence 5688999999994
No 23
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=39.08 E-value=19 Score=30.83 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=12.6
Q ss_pred CCceEEEeccCCcc
Q 023213 167 KVSNIVVIGHSACG 180 (285)
Q Consensus 167 ~Vk~IVV~GHS~CG 180 (285)
.+++|+++||++||
T Consensus 1 ~~r~i~ivG~~~~G 14 (194)
T cd01891 1 DIRNIAIIAHVDHG 14 (194)
T ss_pred CccEEEEEecCCCC
Confidence 36799999999999
No 24
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=39.00 E-value=17 Score=31.05 Aligned_cols=15 Identities=40% Similarity=0.791 Sum_probs=12.7
Q ss_pred CCceEEEeccCCccc
Q 023213 167 KVSNIVVIGHSACGG 181 (285)
Q Consensus 167 ~Vk~IVV~GHS~CGg 181 (285)
.+.+|.|+||.+||=
T Consensus 2 ~~~~I~i~G~~~sGK 16 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGK 16 (188)
T ss_dssp TEEEEEEEESTTSSH
T ss_pred CEEEEEEECCCCCCc
Confidence 357899999999994
No 25
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=38.05 E-value=13 Score=28.39 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=13.6
Q ss_pred eEEEEEEEEccCCeEEE
Q 023213 256 LALKGGYYDFVNGSFEL 272 (285)
Q Consensus 256 L~I~G~~YDi~tG~v~~ 272 (285)
-..|||.||+.||++..
T Consensus 64 Cp~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 64 CPCHGWRFDLDTGECVG 80 (97)
T ss_dssp ETTTTEEEETTTSBEEE
T ss_pred eCCcCCEEeCCCceEec
Confidence 34699999999998643
No 26
>PRK14432 acylphosphatase; Provisional
Probab=34.09 E-value=30 Score=27.21 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=17.1
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 023213 255 TLALKGGYYDFVNGSFELWG 274 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l~ 274 (285)
++.|+||+.+..+|+|+.+-
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~ 46 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVA 46 (93)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 56799999999999988753
No 27
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=33.96 E-value=17 Score=30.97 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=27.0
Q ss_pred hhHHHHHHHHh-----cCCceEEEeccCCccccccccc
Q 023213 155 VGAAVEYAVLH-----LKVSNIVVIGHSACGGIKGLMS 187 (285)
Q Consensus 155 ~~aSLEYAV~~-----L~Vk~IVV~GHS~CGgVkAa~~ 187 (285)
+.++++|-..+ ...+.|+|+|||..|.+...+.
T Consensus 52 ~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~ 89 (211)
T PF07859_consen 52 VKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLA 89 (211)
T ss_dssp HHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHH
T ss_pred cccceeeeccccccccccccceEEeecccccchhhhhh
Confidence 66788888888 7789999999998888876543
No 28
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=33.68 E-value=22 Score=28.97 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=11.1
Q ss_pred eEEEeccCCcccc
Q 023213 170 NIVVIGHSACGGI 182 (285)
Q Consensus 170 ~IVV~GHS~CGgV 182 (285)
+|+|+||.+||=-
T Consensus 1 ~i~~vG~~~~GKs 13 (167)
T cd04160 1 SVLILGLDNAGKT 13 (167)
T ss_pred CEEEEecCCCCHH
Confidence 5899999999954
No 29
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=33.46 E-value=23 Score=29.28 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=11.0
Q ss_pred ceEEEeccCCcc
Q 023213 169 SNIVVIGHSACG 180 (285)
Q Consensus 169 k~IVV~GHS~CG 180 (285)
++|+++||++||
T Consensus 1 rni~~vG~~~~G 12 (179)
T cd01890 1 RNFSIIAHIDHG 12 (179)
T ss_pred CcEEEEeecCCC
Confidence 479999999999
No 30
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=32.30 E-value=17 Score=27.71 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=13.4
Q ss_pred eEEEEEEEEccCCeEE
Q 023213 256 LALKGGYYDFVNGSFE 271 (285)
Q Consensus 256 L~I~G~~YDi~tG~v~ 271 (285)
-..|||.||+.||...
T Consensus 60 Cp~Hg~~fd~~~G~~~ 75 (98)
T cd03528 60 CPLHGGRFDLRTGKAL 75 (98)
T ss_pred eCCcCCEEECCCCccc
Confidence 4579999999999853
No 31
>PRK14430 acylphosphatase; Provisional
Probab=32.04 E-value=34 Score=26.83 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.4
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|+|+.+
T Consensus 29 ~lgl~G~VrN~~dGsVei~ 47 (92)
T PRK14430 29 DLGLGGWVRNRADGTVEVM 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 5679999999999988764
No 32
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=31.74 E-value=16 Score=28.05 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=13.1
Q ss_pred eEEEEEEEEccCCeEE
Q 023213 256 LALKGGYYDFVNGSFE 271 (285)
Q Consensus 256 L~I~G~~YDi~tG~v~ 271 (285)
-..|||.||+.||.+.
T Consensus 59 CP~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 59 CPWHGACFNLRTGDIE 74 (95)
T ss_pred cCCCCCEEECCCCcCc
Confidence 3479999999999753
No 33
>PRK14440 acylphosphatase; Provisional
Probab=31.73 E-value=36 Score=26.54 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=16.6
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|+|+.+
T Consensus 28 ~~gl~G~V~N~~dG~Vei~ 46 (90)
T PRK14440 28 RLGIKGYAKNLPDGSVEVV 46 (90)
T ss_pred HcCCEEEEEECCCCCEEEE
Confidence 5679999999999988864
No 34
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=30.60 E-value=32 Score=29.44 Aligned_cols=15 Identities=13% Similarity=0.503 Sum_probs=12.7
Q ss_pred CCceEEEeccCCccc
Q 023213 167 KVSNIVVIGHSACGG 181 (285)
Q Consensus 167 ~Vk~IVV~GHS~CGg 181 (285)
++..|+|+||.+||=
T Consensus 40 ~~~~I~iiG~~g~GK 54 (204)
T cd01878 40 GIPTVALVGYTNAGK 54 (204)
T ss_pred CCCeEEEECCCCCCH
Confidence 356899999999994
No 35
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=30.17 E-value=46 Score=29.77 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.4
Q ss_pred CchhHHHHHHHHhcCCceEEEecc
Q 023213 153 AGVGAAVEYAVLHLKVSNIVVIGH 176 (285)
Q Consensus 153 ~g~~aSLEYAV~~L~Vk~IVV~GH 176 (285)
.|..+-||||...|+++.++||=|
T Consensus 119 e~lvalLEfAEekl~~d~Vfi~F~ 142 (191)
T KOG4387|consen 119 EGLVALLEFAEEKLHVDKVFICFD 142 (191)
T ss_pred HhHHHHHHHHHHhhccceEEEEEe
Confidence 368899999999999999999855
No 36
>PRK14423 acylphosphatase; Provisional
Probab=29.98 E-value=46 Score=25.99 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.8
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|.|+.+
T Consensus 30 ~lgl~G~V~N~~dG~Vei~ 48 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAV 48 (92)
T ss_pred HcCCEEEEEECCCCeEEEE
Confidence 5789999999999998764
No 37
>PHA02244 ATPase-like protein
Probab=29.59 E-value=65 Score=32.02 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=8.7
Q ss_pred eEEEeccCCcccc
Q 023213 170 NIVVIGHSACGGI 182 (285)
Q Consensus 170 ~IVV~GHS~CGgV 182 (285)
.|++.|.++||=-
T Consensus 121 PVLL~GppGtGKT 133 (383)
T PHA02244 121 PVFLKGGAGSGKN 133 (383)
T ss_pred CEEEECCCCCCHH
Confidence 4666777777754
No 38
>PRK14445 acylphosphatase; Provisional
Probab=29.57 E-value=49 Score=25.74 Aligned_cols=19 Identities=26% Similarity=0.393 Sum_probs=16.6
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|+|+..
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIE 47 (91)
T ss_pred hCCCEEEEEECCCCeEEEE
Confidence 5789999999999988764
No 39
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=28.95 E-value=61 Score=24.55 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=19.1
Q ss_pred ceEEEEEEEEccC--CeEEEEeccCC
Q 023213 255 TLALKGGYYDFVN--GSFELWGLDFS 278 (285)
Q Consensus 255 ~L~I~G~~YDi~t--G~v~~l~~~~~ 278 (285)
++.|+||++.+.. |.+-|+++.-.
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~ 26 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDP 26 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECC
Confidence 4789999999997 68888887543
No 40
>TIGR00312 cbiD cobalamin biosynthesis protein CbiD. role_id
Probab=28.92 E-value=5.5e+02 Score=25.16 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=21.6
Q ss_pred ccCc-hhHHHHHHHHhcCCceEEEeccCC
Q 023213 151 KYAG-VGAAVEYAVLHLKVSNIVVIGHSA 178 (285)
Q Consensus 151 r~~g-~~aSLEYAV~~L~Vk~IVV~GHS~ 178 (285)
...+ +..+|++|+. .+++.|+++||-+
T Consensus 216 ~~gnfiG~~L~~a~~-~g~~~i~l~G~~G 243 (347)
T TIGR00312 216 KTANFLGSMLVAAAA-VGVEEILLLGHAG 243 (347)
T ss_pred EEehhhHHHHHHHHH-cCCCEEEEEeEhH
Confidence 4344 6667999988 5999999999976
No 41
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=28.53 E-value=32 Score=29.62 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=21.4
Q ss_pred HHHHHHhcCCceEEEeccCCcccccccc
Q 023213 159 VEYAVLHLKVSNIVVIGHSACGGIKGLM 186 (285)
Q Consensus 159 LEYAV~~L~Vk~IVV~GHS~CGgVkAa~ 186 (285)
+..-+.+++.+.++|+|||--|.+...+
T Consensus 86 ~~~~~~~~~~~~~~liG~S~Gg~ia~~~ 113 (288)
T TIGR01250 86 LEEVREKLGLDKFYLLGHSWGGMLAQEY 113 (288)
T ss_pred HHHHHHHcCCCcEEEEEeehHHHHHHHH
Confidence 4445678888889999999988886543
No 42
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=28.50 E-value=5.8e+02 Score=25.11 Aligned_cols=27 Identities=30% Similarity=0.557 Sum_probs=21.2
Q ss_pred ccCc-hhHHHHHHHHhcCCceEEEeccCC
Q 023213 151 KYAG-VGAAVEYAVLHLKVSNIVVIGHSA 178 (285)
Q Consensus 151 r~~g-~~aSLEYAV~~L~Vk~IVV~GHS~ 178 (285)
...+ +.-+|++|+. .+++.|+++||-+
T Consensus 229 ~~gnfiG~~L~~A~~-~g~~~i~l~G~~G 256 (361)
T PRK00075 229 KMGNFVGPMLKAAAR-LGVKKVLLVGHPG 256 (361)
T ss_pred EeehhHHHHHHHHHH-cCCCEEEEEeeHH
Confidence 4344 5567888877 8999999999975
No 43
>PRK13946 shikimate kinase; Provisional
Probab=27.78 E-value=36 Score=29.25 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.1
Q ss_pred HHHHHhcCCceEEEeccCCcccccc
Q 023213 160 EYAVLHLKVSNIVVIGHSACGGIKG 184 (285)
Q Consensus 160 EYAV~~L~Vk~IVV~GHS~CGgVkA 184 (285)
|-|+..|.-+.|+|+|..+||.-.-
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKsti 26 (184)
T PRK13946 2 ERARAALGKRTVVLVGLMGAGKSTV 26 (184)
T ss_pred cchhhccCCCeEEEECCCCCCHHHH
Confidence 3467788999999999999998764
No 44
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=27.70 E-value=33 Score=30.02 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=10.7
Q ss_pred ceEEEeccCCcc
Q 023213 169 SNIVVIGHSACG 180 (285)
Q Consensus 169 k~IVV~GHS~CG 180 (285)
++|+|+||.++|
T Consensus 1 rnv~iiG~~~~G 12 (213)
T cd04167 1 RNVAIAGHLHHG 12 (213)
T ss_pred CcEEEEcCCCCC
Confidence 479999999998
No 45
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=27.44 E-value=38 Score=31.35 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=12.4
Q ss_pred CceEEEeccCCccc
Q 023213 168 VSNIVVIGHSACGG 181 (285)
Q Consensus 168 Vk~IVV~GHS~CGg 181 (285)
.++|.|+||.+||=
T Consensus 2 ~Rni~ivGh~~~GK 15 (267)
T cd04169 2 RRTFAIISHPDAGK 15 (267)
T ss_pred ccEEEEEcCCCCCH
Confidence 47999999999994
No 46
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=27.22 E-value=38 Score=27.46 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=10.7
Q ss_pred ceEEEeccCCcc
Q 023213 169 SNIVVIGHSACG 180 (285)
Q Consensus 169 k~IVV~GHS~CG 180 (285)
+.|+|+|+++||
T Consensus 1 ~~i~iiG~~~~G 12 (168)
T cd01887 1 PVVTVMGHVDHG 12 (168)
T ss_pred CEEEEEecCCCC
Confidence 469999999999
No 47
>PRK14448 acylphosphatase; Provisional
Probab=27.20 E-value=46 Score=25.93 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|.|+.+
T Consensus 27 ~lgl~G~V~N~~dG~Vei~ 45 (90)
T PRK14448 27 KIGIKGYVKNRPDGSVEVV 45 (90)
T ss_pred HhCCEEEEEECCCCCEEEE
Confidence 5679999999999988764
No 48
>PRK14429 acylphosphatase; Provisional
Probab=27.10 E-value=52 Score=25.56 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.4
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|+|+.+
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (90)
T PRK14429 27 ALGVTGYVTNCEDGSVEIL 45 (90)
T ss_pred HhCCEEEEEECCCCeEEEE
Confidence 5679999999999988764
No 49
>PRK03592 haloalkane dehalogenase; Provisional
Probab=26.68 E-value=32 Score=31.04 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCceEEEeccCCcccccccc
Q 023213 158 AVEYAVLHLKVSNIVVIGHSACGGIKGLM 186 (285)
Q Consensus 158 SLEYAV~~L~Vk~IVV~GHS~CGgVkAa~ 186 (285)
-|.--+.+|+.+.++|+|||-.|.|...+
T Consensus 82 dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~ 110 (295)
T PRK03592 82 YLDAWFDALGLDDVVLVGHDWGSALGFDW 110 (295)
T ss_pred HHHHHHHHhCCCCeEEEEECHHHHHHHHH
Confidence 34555677888888888888888886544
No 50
>PRK14451 acylphosphatase; Provisional
Probab=26.34 E-value=50 Score=25.72 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=16.7
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|+|+..
T Consensus 28 ~~gl~G~V~N~~dG~Vei~ 46 (89)
T PRK14451 28 QLMISGWARNLADGRVEVF 46 (89)
T ss_pred HhCCEEEEEECCCCCEEEE
Confidence 5679999999999998874
No 51
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.21 E-value=94 Score=29.50 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHHHHHhhhccCChHHHHhhcCCCCCceEcccCchhHHHHHHHHhc--------CCceEEEeccCCccc
Q 023213 110 KAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMTKYAGVGAAVEYAVLHL--------KVSNIVVIGHSACGG 181 (285)
Q Consensus 110 tp~~~l~~L~~GN~rF~~~~~~~~p~~f~~La~GQ~P~~l~r~~g~~aSLEYAV~~L--------~Vk~IVV~GHS~CGg 181 (285)
.-.+.++-+++-...+........+.....|. ..|..-+.+|+||+.|= .=-+||++|=|+||=
T Consensus 86 ~~vdvl~p~i~~le~~lg~~~~~~~g~~h~l~--------~~Yf~RIeAi~Fal~hDDG~~~~~l~~ADvILvGVSRtsK 157 (273)
T COG1806 86 PCVDVLGPLIALLESELGLEPTPEPGRQHSLD--------DDYFDRIEAINFALAHDDGQSPRNLDEADVILVGVSRTSK 157 (273)
T ss_pred CeehHHHHHHHHHHHHhCCCCcccccccccch--------HHHHHHHHHHHHHHhccCCCCccccCccCEEEEeeccCCC
Confidence 34577788877777776665443332211111 23456778899999774 334699999999983
No 52
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=25.88 E-value=28 Score=27.24 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=12.9
Q ss_pred eEEEEEEEEccCCeE
Q 023213 256 LALKGGYYDFVNGSF 270 (285)
Q Consensus 256 L~I~G~~YDi~tG~v 270 (285)
-..|||.||+.||+.
T Consensus 62 CP~Hg~~Fdl~tG~~ 76 (101)
T TIGR02377 62 CPKHAGCFDYRTGEA 76 (101)
T ss_pred CCccCCEEECCCCcc
Confidence 347999999999975
No 53
>PRK14441 acylphosphatase; Provisional
Probab=25.61 E-value=67 Score=25.15 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=17.2
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 023213 254 KTLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 254 g~L~I~G~~YDi~tG~v~~l 273 (285)
.++.|.||+.+..+|+|+.+
T Consensus 29 ~~lgL~G~V~N~~dG~Vei~ 48 (93)
T PRK14441 29 RRLGVEGWVRNLPDGRVEAE 48 (93)
T ss_pred hhcCcEEEEEECCCCEEEEE
Confidence 36789999999999988764
No 54
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=25.48 E-value=35 Score=28.28 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=14.8
Q ss_pred eEEEEEEEEccCCeEEEE
Q 023213 256 LALKGGYYDFVNGSFELW 273 (285)
Q Consensus 256 L~I~G~~YDi~tG~v~~l 273 (285)
-..|||-||+.||++.-+
T Consensus 76 Cp~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 76 CWYHGWTYRLDDGKLVTI 93 (136)
T ss_pred ecCCccEEeCCCccEEEc
Confidence 457999999999997654
No 55
>PRK14426 acylphosphatase; Provisional
Probab=25.19 E-value=57 Score=25.48 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|.|+.+
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (92)
T PRK14426 29 KLGLTGYAKNLDDGSVEVV 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 5789999999999988764
No 56
>PRK14425 acylphosphatase; Provisional
Probab=24.96 E-value=59 Score=25.56 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=16.6
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|.|+.+
T Consensus 31 ~~gl~G~V~N~~dGsVei~ 49 (94)
T PRK14425 31 RLGLTGWVRNESDGSVTAL 49 (94)
T ss_pred HhCCEEEEEECCCCeEEEE
Confidence 4669999999999999875
No 57
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=24.43 E-value=29 Score=27.13 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=12.6
Q ss_pred eEEEEEEEEccCCeE
Q 023213 256 LALKGGYYDFVNGSF 270 (285)
Q Consensus 256 L~I~G~~YDi~tG~v 270 (285)
-..|||.||+.||..
T Consensus 67 Cp~Hg~~Fdl~tG~~ 81 (105)
T TIGR02378 67 CPLHKRNFRLEDGRC 81 (105)
T ss_pred CCcCCCEEEcCCccc
Confidence 346999999999974
No 58
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.26 E-value=1.5e+02 Score=22.50 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=14.5
Q ss_pred hhhccHHHHHHHHHHHHh
Q 023213 66 MANQSYEEAIEALKKLLK 83 (285)
Q Consensus 66 ~~~~~~~~ai~~l~~ll~ 83 (285)
|...+||+|+..|.++++
T Consensus 1 m~~~~fEeal~~LE~IV~ 18 (75)
T PRK14066 1 MAVEKFETALKKLEEVVK 18 (75)
T ss_pred CccccHHHHHHHHHHHHH
Confidence 667789999998877765
No 59
>PRK14434 acylphosphatase; Provisional
Probab=24.24 E-value=68 Score=25.15 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=16.3
Q ss_pred ceE-EEEEEEEccCCeEEEE
Q 023213 255 TLA-LKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~-I~G~~YDi~tG~v~~l 273 (285)
++. |.||+.+..+|+|+..
T Consensus 27 ~lg~l~G~V~N~~dGsVei~ 46 (92)
T PRK14434 27 EIGDIYGRVWNNDDGTVEIL 46 (92)
T ss_pred HcCCcEEEEEECCCCCEEEE
Confidence 577 9999999999988754
No 60
>PRK14449 acylphosphatase; Provisional
Probab=23.96 E-value=66 Score=24.96 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.6
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|.|+.+
T Consensus 28 ~lgl~G~V~N~~dG~Vei~ 46 (90)
T PRK14449 28 SLGITGYAENLYDGSVEVV 46 (90)
T ss_pred HcCCEEEEEECCCCeEEEE
Confidence 5679999999999988764
No 61
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=23.89 E-value=28 Score=27.21 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=12.3
Q ss_pred EEEEEEEEccCCeE
Q 023213 257 ALKGGYYDFVNGSF 270 (285)
Q Consensus 257 ~I~G~~YDi~tG~v 270 (285)
..|||.||+.||..
T Consensus 67 p~Hg~~Fdl~tG~~ 80 (103)
T cd03529 67 PLYKQHFSLKTGRC 80 (103)
T ss_pred CCCCCEEEcCCCCc
Confidence 46999999999985
No 62
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=23.78 E-value=26 Score=28.03 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=12.8
Q ss_pred eEEEEEEEEccCCeE
Q 023213 256 LALKGGYYDFVNGSF 270 (285)
Q Consensus 256 L~I~G~~YDi~tG~v 270 (285)
-..|||.||+.||+.
T Consensus 70 CP~H~~~Fdl~TG~~ 84 (108)
T PRK09511 70 SPLKKQRFRLSDGLC 84 (108)
T ss_pred CCCCCCEEECCCccc
Confidence 357999999999975
No 63
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=23.77 E-value=48 Score=26.94 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=11.6
Q ss_pred ceEEEeccCCcccc
Q 023213 169 SNIVVIGHSACGGI 182 (285)
Q Consensus 169 k~IVV~GHS~CGgV 182 (285)
+.|+|+|++++|=-
T Consensus 1 ~~i~~~G~~~~GKs 14 (168)
T cd01897 1 PTLVIAGYPNVGKS 14 (168)
T ss_pred CeEEEEcCCCCCHH
Confidence 47999999999853
No 64
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=23.71 E-value=50 Score=25.32 Aligned_cols=12 Identities=50% Similarity=0.822 Sum_probs=10.4
Q ss_pred eEEEeccCCccc
Q 023213 170 NIVVIGHSACGG 181 (285)
Q Consensus 170 ~IVV~GHS~CGg 181 (285)
.|+|+|..+||=
T Consensus 1 kI~V~G~~g~GK 12 (119)
T PF08477_consen 1 KIVVLGDSGVGK 12 (119)
T ss_dssp EEEEECSTTSSH
T ss_pred CEEEECcCCCCH
Confidence 589999999994
No 65
>PRK14420 acylphosphatase; Provisional
Probab=23.65 E-value=64 Score=24.96 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|.|+.+
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (91)
T PRK14420 27 KRKLTGWVKNRDDGTVEIE 45 (91)
T ss_pred HcCCEEEEEECCCCcEEEE
Confidence 4679999999999988764
No 66
>PRK14436 acylphosphatase; Provisional
Probab=23.64 E-value=66 Score=25.11 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|+|+.+
T Consensus 29 ~l~l~G~V~N~~dG~Vei~ 47 (91)
T PRK14436 29 KLGVNGWVRNLPDGSVEAV 47 (91)
T ss_pred HcCCEEEEEECCCCcEEEE
Confidence 5679999999999988764
No 67
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=23.36 E-value=47 Score=28.31 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=10.6
Q ss_pred eEEEeccCCccc
Q 023213 170 NIVVIGHSACGG 181 (285)
Q Consensus 170 ~IVV~GHS~CGg 181 (285)
+|+|+||.++|=
T Consensus 2 ~i~i~G~~~~GK 13 (192)
T cd01889 2 NVGVLGHVDSGK 13 (192)
T ss_pred eEEEEecCCCCH
Confidence 589999999993
No 68
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=23.16 E-value=26 Score=26.88 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=12.7
Q ss_pred eEEEEEEEEccCCeE
Q 023213 256 LALKGGYYDFVNGSF 270 (285)
Q Consensus 256 L~I~G~~YDi~tG~v 270 (285)
-..|||.||+.||.+
T Consensus 61 Cp~Hg~~Fdl~~G~~ 75 (98)
T cd03530 61 CPLHNWVIDLETGEA 75 (98)
T ss_pred CCCCCCEEECCCCCC
Confidence 357999999999974
No 69
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=23.11 E-value=40 Score=30.38 Aligned_cols=28 Identities=14% Similarity=-0.026 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCceEEEeccCCccccccc
Q 023213 158 AVEYAVLHLKVSNIVVIGHSACGGIKGL 185 (285)
Q Consensus 158 SLEYAV~~L~Vk~IVV~GHS~CGgVkAa 185 (285)
-|.=.+.+|+.+.++++|||-.|.|...
T Consensus 91 ~l~~~l~~l~~~~~~lvGhS~Gg~va~~ 118 (294)
T PLN02824 91 QLNDFCSDVVGDPAFVICNSVGGVVGLQ 118 (294)
T ss_pred HHHHHHHHhcCCCeEEEEeCHHHHHHHH
Confidence 3444455777888888888888877643
No 70
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=23.05 E-value=52 Score=26.77 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=25.2
Q ss_pred hhHHHHHHHHhcCCceEEEeccCCcccccccc
Q 023213 155 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 186 (285)
Q Consensus 155 ~~aSLEYAV~~L~Vk~IVV~GHS~CGgVkAa~ 186 (285)
....|.-.+..++.+.|+|+|||-=|.+...+
T Consensus 52 ~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~ 83 (228)
T PF12697_consen 52 YAEDLAELLDALGIKKVILVGHSMGGMIALRL 83 (228)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEETHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccc
Confidence 34567778999999999999999877765433
No 71
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=22.70 E-value=58 Score=31.40 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=23.7
Q ss_pred CchhHHHHHHHHhcCCceEEEeccCCccccc
Q 023213 153 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 183 (285)
Q Consensus 153 ~g~~aSLEYAV~~L~Vk~IVV~GHS~CGgVk 183 (285)
.+-..+|--++..++=+-++|+||..--..+
T Consensus 91 f~dD~Aivgglar~~G~pv~vIG~qKG~dtk 121 (317)
T COG0825 91 FADDPAIVGGLARFGGQPVVVIGHQKGRDTK 121 (317)
T ss_pred cCcChhheeeeeeECCeeEEEEeeecCccch
Confidence 3455567777889999999999998655554
No 72
>PRK14446 acylphosphatase; Provisional
Probab=22.67 E-value=84 Score=24.50 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=17.4
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 023213 254 KTLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 254 g~L~I~G~~YDi~tG~v~~l 273 (285)
.++.|.||+.|..+|+|+.+
T Consensus 26 ~~lgl~G~V~N~~dGsVei~ 45 (88)
T PRK14446 26 VALGLVGHARNQADGSVEVV 45 (88)
T ss_pred eeCCeEEEEEECCCCCEEEE
Confidence 46889999999999988764
No 73
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=22.63 E-value=35 Score=26.74 Aligned_cols=15 Identities=13% Similarity=-0.133 Sum_probs=12.7
Q ss_pred eEEEEEEEEccCCeE
Q 023213 256 LALKGGYYDFVNGSF 270 (285)
Q Consensus 256 L~I~G~~YDi~tG~v 270 (285)
-..|||.||++||..
T Consensus 61 CP~Hg~~Fdl~~G~~ 75 (108)
T cd03474 61 CRAHLWQFDADTGEG 75 (108)
T ss_pred eCCcCCEEECCCccc
Confidence 457999999999974
No 74
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=22.62 E-value=52 Score=26.73 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=10.3
Q ss_pred eEEEeccCCcc
Q 023213 170 NIVVIGHSACG 180 (285)
Q Consensus 170 ~IVV~GHS~CG 180 (285)
.|+|+|+.+||
T Consensus 2 ki~viG~~~~G 12 (172)
T cd01862 2 KVIILGDSGVG 12 (172)
T ss_pred EEEEECCCCCC
Confidence 68999999999
No 75
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=22.55 E-value=44 Score=30.44 Aligned_cols=11 Identities=55% Similarity=1.054 Sum_probs=10.2
Q ss_pred eEEEeccCCcc
Q 023213 170 NIVVIGHSACG 180 (285)
Q Consensus 170 ~IVV~GHS~CG 180 (285)
+|+|+||++||
T Consensus 1 ni~ivG~~gsG 11 (268)
T cd04170 1 NIALVGHSGSG 11 (268)
T ss_pred CEEEECCCCCC
Confidence 58999999999
No 76
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=22.55 E-value=45 Score=27.87 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=25.4
Q ss_pred chhHHHHHHHHhcCCceEEEeccCCcccccc
Q 023213 154 GVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 184 (285)
Q Consensus 154 g~~aSLEYAV~~L~Vk~IVV~GHS~CGgVkA 184 (285)
.....+++-..+||++.|.++|||.=|.+..
T Consensus 29 ~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~ 59 (230)
T PF00561_consen 29 DLAADLEALREALGIKKINLVGHSMGGMLAL 59 (230)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCChHHHH
Confidence 3677899999999999999999998554443
No 77
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=22.51 E-value=36 Score=27.28 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=13.1
Q ss_pred eEEEEEEEEccCCeE
Q 023213 256 LALKGGYYDFVNGSF 270 (285)
Q Consensus 256 L~I~G~~YDi~tG~v 270 (285)
-..|||.||+.||+.
T Consensus 66 Cp~H~a~Fdl~tG~~ 80 (106)
T COG2146 66 CPLHGARFDLRTGEC 80 (106)
T ss_pred CCccCCEEEcCCCce
Confidence 468999999999985
No 78
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=22.39 E-value=68 Score=24.57 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=14.2
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|.|+.+
T Consensus 29 ~~gl~G~V~N~~dg~V~i~ 47 (91)
T PF00708_consen 29 KLGLTGWVRNLPDGSVEIE 47 (91)
T ss_dssp HTT-EEEEEE-TTSEEEEE
T ss_pred HhCCceEEEECCCCEEEEE
Confidence 4569999999999988764
No 79
>PRK14443 acylphosphatase; Provisional
Probab=22.31 E-value=75 Score=25.08 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=17.3
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 023213 255 TLALKGGYYDFVNGSFELWG 274 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l~ 274 (285)
++.|.||+-+..+|.|+.+-
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~ 48 (93)
T PRK14443 29 KYDISGTVKNLDDGSVEIHA 48 (93)
T ss_pred HcCCEEEEEECCCCEEEEEE
Confidence 57799999999999998753
No 80
>PRK14444 acylphosphatase; Provisional
Probab=22.28 E-value=68 Score=25.05 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|.|+..
T Consensus 29 ~lgl~G~V~N~~dG~Vei~ 47 (92)
T PRK14444 29 EAGVKGWVRNLSDGRVEAV 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 5779999999999988754
No 81
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=22.05 E-value=46 Score=30.66 Aligned_cols=24 Identities=17% Similarity=-0.050 Sum_probs=20.4
Q ss_pred EEEEEEEccCCeEEEEeccCCCCC
Q 023213 258 LKGGYYDFVNGSFELWGLDFSLSP 281 (285)
Q Consensus 258 I~G~~YDi~tG~v~~l~~~~~~~~ 281 (285)
|+=++||.+||+..++.-|++|-.
T Consensus 171 vIRrVvDpETGRtRLIkGdGEilE 194 (225)
T PF10500_consen 171 VIRRVVDPETGRTRLIKGDGEILE 194 (225)
T ss_pred hheeeecCCCCceeeecccchHHH
Confidence 566899999999999999987743
No 82
>PRK14422 acylphosphatase; Provisional
Probab=22.00 E-value=69 Score=25.11 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|+|+..
T Consensus 31 ~~gl~G~V~N~~dG~Vei~ 49 (93)
T PRK14422 31 ELGLTGYAANLADGRVQVV 49 (93)
T ss_pred HcCCEEEEEECCCCCEEEE
Confidence 5789999999999988754
No 83
>PRK14433 acylphosphatase; Provisional
Probab=22.00 E-value=70 Score=24.76 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.6
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|.|+.+
T Consensus 26 ~~~l~G~V~N~~dG~Vei~ 44 (87)
T PRK14433 26 ELGLSGYAENLSDGRVEVV 44 (87)
T ss_pred HcCCEEEEEECCCCCEEEE
Confidence 5779999999999988764
No 84
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=21.92 E-value=58 Score=29.64 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=10.2
Q ss_pred chhHHHHHHHHhcCCceEEEe
Q 023213 154 GVGAAVEYAVLHLKVSNIVVI 174 (285)
Q Consensus 154 g~~aSLEYAV~~L~Vk~IVV~ 174 (285)
|...++.||...-.|+-+|++
T Consensus 110 Gg~~a~~~a~~~~~v~~lil~ 130 (274)
T TIGR03100 110 AASAALLYAPADLRVAGLVLL 130 (274)
T ss_pred HHHHHHHHhhhCCCccEEEEE
Confidence 334455555444445555555
No 85
>PRK10566 esterase; Provisional
Probab=21.89 E-value=65 Score=28.12 Aligned_cols=15 Identities=27% Similarity=0.135 Sum_probs=9.7
Q ss_pred CCceEEEeccCCccc
Q 023213 167 KVSNIVVIGHSACGG 181 (285)
Q Consensus 167 ~Vk~IVV~GHS~CGg 181 (285)
+.+.|+|+|||-=|.
T Consensus 105 ~~~~i~v~G~S~Gg~ 119 (249)
T PRK10566 105 LDDRLAVGGASMGGM 119 (249)
T ss_pred CccceeEEeecccHH
Confidence 346778888877333
No 86
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=21.82 E-value=34 Score=28.01 Aligned_cols=16 Identities=6% Similarity=-0.081 Sum_probs=13.8
Q ss_pred eEEEEEEEEccCCeEE
Q 023213 256 LALKGGYYDFVNGSFE 271 (285)
Q Consensus 256 L~I~G~~YDi~tG~v~ 271 (285)
-..|||-||+.||+..
T Consensus 70 CP~Hg~~FDLrTG~~~ 85 (107)
T cd03473 70 CTKHNWKLDVSTMKYV 85 (107)
T ss_pred eCCCCCEEEcCCCCCc
Confidence 4579999999999864
No 87
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=21.62 E-value=47 Score=29.31 Aligned_cols=11 Identities=64% Similarity=1.084 Sum_probs=10.2
Q ss_pred eEEEeccCCcc
Q 023213 170 NIVVIGHSACG 180 (285)
Q Consensus 170 ~IVV~GHS~CG 180 (285)
+|.|+||.+||
T Consensus 1 nv~i~Gh~~~G 11 (219)
T cd01883 1 NLVVIGHVDAG 11 (219)
T ss_pred CEEEecCCCCC
Confidence 58999999999
No 88
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=21.27 E-value=36 Score=26.79 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=12.4
Q ss_pred EEEEEEEEccCCeE
Q 023213 257 ALKGGYYDFVNGSF 270 (285)
Q Consensus 257 ~I~G~~YDi~tG~v 270 (285)
..|||.||+.||+.
T Consensus 63 p~Hg~~Fd~~tG~~ 76 (106)
T PRK09965 63 PLHAASFCLRTGKA 76 (106)
T ss_pred CCCCCEEEcCCCCe
Confidence 47999999999985
No 89
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=21.21 E-value=58 Score=26.50 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=11.9
Q ss_pred ceEEEeccCCcccc
Q 023213 169 SNIVVIGHSACGGI 182 (285)
Q Consensus 169 k~IVV~GHS~CGgV 182 (285)
-.|+|+|+++||=-
T Consensus 8 ~~v~v~G~~~~GKS 21 (169)
T cd04114 8 FKIVLIGNAGVGKT 21 (169)
T ss_pred eEEEEECCCCCCHH
Confidence 57999999999943
No 90
>PRK14437 acylphosphatase; Provisional
Probab=20.85 E-value=70 Score=26.00 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.6
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|+|+.+
T Consensus 48 ~lgL~G~V~N~~dG~Vei~ 66 (109)
T PRK14437 48 ELQLTGWVKNLSHGDVELV 66 (109)
T ss_pred HhCCeEEEEECCCCCEEEE
Confidence 5679999999999998775
No 91
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=20.44 E-value=36 Score=26.01 Aligned_cols=16 Identities=19% Similarity=0.384 Sum_probs=13.5
Q ss_pred eEEEEEEEEccCCeEE
Q 023213 256 LALKGGYYDFVNGSFE 271 (285)
Q Consensus 256 L~I~G~~YDi~tG~v~ 271 (285)
-..|||.||++||+..
T Consensus 61 Cp~H~~~f~~~~G~~~ 76 (98)
T cd03467 61 CPCHGSRFDLRTGEVV 76 (98)
T ss_pred eCCCCCEEeCCCccCc
Confidence 4579999999999854
No 92
>PRK14435 acylphosphatase; Provisional
Probab=20.38 E-value=79 Score=24.59 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.6
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023213 255 TLALKGGYYDFVNGSFELW 273 (285)
Q Consensus 255 ~L~I~G~~YDi~tG~v~~l 273 (285)
++.|.||+.+..+|.|+..
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (90)
T PRK14435 27 SLGVKGYVMNMDDGSVFIH 45 (90)
T ss_pred HhCCEEEEEECCCCCEEEE
Confidence 5679999999999998865
Done!