BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023214
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
P N + +VLVG+TG GKSATGNSILGR+ F S ++ +T CE + + K+ ++V V+
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGK 134
DTPG+FD + KEI++CI + G HA+L +EE A + FG+
Sbjct: 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALL-LVVPLGRYTEEEHKATEKILKXFGE 142
Query: 135 KIFDYMIVVF 144
+ + I++F
Sbjct: 143 RARSFXILIF 152
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
S E ++LVG+TG GKSA GNSIL ++AF+S+ S +T TC + + ++V +ID
Sbjct: 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
TP +F + E + KE+ +C ++ G H +L Q+++AA ++ +FG+
Sbjct: 78 TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 136
Query: 136 IFDYMIVVF 144
+ IV+F
Sbjct: 137 AMGHTIVLF 145
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
S E ++LVG+TG GKSA GNSIL ++AF+S+ S +T TC + + ++V +ID
Sbjct: 2 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
TP +F + E + KE+ +C ++ G H +L Q+++AA ++ +FG+
Sbjct: 61 TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 119
Query: 136 IFDYMIVVF 144
+ IV+F
Sbjct: 120 AMGHTIVLF 128
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78
E ++LVG+TG GKSA GNSIL ++AF+S+ S +T TC + + ++V +IDTP
Sbjct: 2 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFD 138
+F + E + KE+ +C ++ G H +L Q+++AA ++ +FG+
Sbjct: 61 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGEDAMG 119
Query: 139 YMIVVF 144
+ IV+F
Sbjct: 120 HTIVLF 125
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
S E ++LVG+TG GKSA GNSIL ++AF+S+ S +T TC + + ++V +ID
Sbjct: 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
TP F + E + KE+ +C ++ G H +L Q+++AA ++ +FG+
Sbjct: 78 TPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 136
Query: 136 IFDYMIVVF 144
+ IV+F
Sbjct: 137 AXGHTIVLF 145
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
R ++LVGRTG GKSATGNSILG+R F SR ++ VT C + D V V+DTP +
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDI 80
Query: 80 FDFSAGSEFVG-KEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFD 138
F G +E C ++ G HA+L Q+++ A+ ++ +FG+ +
Sbjct: 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQ-AVRQVRDMFGEDVLK 139
Query: 139 YMIVVF 144
+M++VF
Sbjct: 140 WMVIVF 145
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
TV+++G+ G GKS+T NS++G + + + + RT+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
+ AG +V + ++ I + I +L E ++ + ++ FGK+I+
Sbjct: 96 E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
++V + + + LK + +K+R Q+FE
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDELLKTIRAGSKMRKQEFE 198
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
TV+++G+ G GKS+T NS++G + + + + RT+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
+ AG +V + ++ I + I +L E ++ + ++ FGK+I+
Sbjct: 96 E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
++V + + LK + +K+R Q+FE
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFE 198
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGL 79
V +VG+ GKS N++LG K S +T + R +L +G Q+V +DTPGL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLG---VKVAPISPRPQTTRKRLRGILTEGRRQIV-FVDTPGL 65
Query: 80 F-DFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGK 134
A EF+ +E+ + + ++AV+ E+E +L+ L GK
Sbjct: 66 HKPMDALGEFMDQEVYEALA----DVNAVVWVVDLRHPPTPEDELVARALKPLVGK 117
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
TV+++G+ G GKS+T NS++G + + + + RT+ G +N+IDTPGL
Sbjct: 37 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 94
Query: 81 DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
+ AG +V + ++ I + I +L E ++ + ++ FGK+I+
Sbjct: 95 E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 150
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
++V + + LK + +K+R Q+FE
Sbjct: 151 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFE 197
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
T++++G+ G GKS+T NSI+G R S + R+ + G +N+IDTPGL
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLI 98
Query: 81 D 81
+
Sbjct: 99 E 99
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
TV+++G+ G GKS+T NS++G + + + + RT+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
+ AG +V + ++ I + I +L E ++ + ++ FGK+I+
Sbjct: 96 E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
++V + + LK + +K+R Q+FE
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFE 198
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
T+++ G+ G GKS+T NSI+G R S + R+ + G +N+IDTPGL
Sbjct: 41 TILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRS--RAGFTLNIIDTPGLI 98
Query: 81 D 81
+
Sbjct: 99 E 99
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-------ASSSGVTSTCEMQRTVLKD----- 67
RTV LVG G+GK+ ++L + K R +++ T ++ RT ++
Sbjct: 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL 69
Query: 68 ---GQVVNVIDTPGLFDF 82
G V ++D PG DF
Sbjct: 70 LFRGHRVFLLDAPGYGDF 87
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----DGQVVNVIDT 76
VV+ GR GKS+ N++ GR A + VT R VL+ DG +++IDT
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGMPLHIIDT 62
Query: 77 PGLFDFSAGSEFVGKE 92
GL + S E +G E
Sbjct: 63 AGLREASDEVERIGIE 78
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----DGQVVNVIDT 76
VV+ GR GKS+ N++ GR A + VT R VL+ DG +++IDT
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGMPLHIIDT 59
Query: 77 PGLFDFSAGSEFVGKE 92
GL + S E +G E
Sbjct: 60 AGLREASDEVERIGIE 75
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----DGQVVNVIDT 76
VV+ GR GKS+ N++ GR A + VT R VL+ DG +++IDT
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGXPLHIIDT 59
Query: 77 PGLFDFSAGSEFVGKE 92
GL + S E +G E
Sbjct: 60 AGLREASDEVERIGIE 75
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
P G + L GR+ GKS+ NS++ R+ +S G T T ++ D ++ +
Sbjct: 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IINDE--LHFV 74
Query: 75 DTPG 78
D PG
Sbjct: 75 DVPG 78
>pdb|3I00|A Chain A, Crystal Structure Of The Huntingtin Interacting Protein 1
Coiled Coil Domain
pdb|3I00|B Chain B, Crystal Structure Of The Huntingtin Interacting Protein 1
Coiled Coil Domain
Length = 120
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 192 REISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQLAQMK 251
REIS LK Q+ + +K ++ V +LK + LE LAE+Q R +A + + + +
Sbjct: 22 REISGLKAQL-----ENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAE 76
Query: 252 SNDEIRKLRENLERAQRETEELRKQAE 278
DE+R+ RE+ E+AQR E+ ++A+
Sbjct: 77 L-DELRRQREDTEKAQRSLSEIERKAQ 102
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 184 DSLKGYSKREISELKEQ----------MHKSYEDQLKRITEMVESKLKETTTRLEQQLAE 233
D K +++ +SELKEQ +++ DQ K ITE +E KL E T +LE L +
Sbjct: 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074
Query: 234 EQ 235
E+
Sbjct: 1075 ER 1076
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
V++VG GKS N + G+RA S + G+T +Q L++G V ++DTPG+
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKG--IQWFSLENG--VKILDTPGI 154
>pdb|2QA7|A Chain A, Crystal Structure Of Huntingtin-Interacting Protein 1
(Hip1) Coiled-Coil Domain With A Basic Surface Suitable
For Hip-Protein Interactor (Hippi)
pdb|2QA7|B Chain B, Crystal Structure Of Huntingtin-Interacting Protein 1
(Hip1) Coiled-Coil Domain With A Basic Surface Suitable
For Hip-Protein Interactor (Hippi)
pdb|2QA7|C Chain C, Crystal Structure Of Huntingtin-Interacting Protein 1
(Hip1) Coiled-Coil Domain With A Basic Surface Suitable
For Hip-Protein Interactor (Hippi)
pdb|2QA7|D Chain D, Crystal Structure Of Huntingtin-Interacting Protein 1
(Hip1) Coiled-Coil Domain With A Basic Surface Suitable
For Hip-Protein Interactor (Hippi)
Length = 114
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 192 REISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQLAQMK 251
REIS LK Q+ + +K ++ V +LK + LE LAE+Q R +A + + + +
Sbjct: 15 REISGLKAQL-----ENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAE 69
Query: 252 SNDEIRKLRENLERAQRETEELRKQAE 278
DE+R+ RE+ E+AQR E+ ++A+
Sbjct: 70 L-DELRRQREDTEKAQRSLSEIERKAQ 95
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 10 WELTSPSNG-ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV-LKD 67
+ + P G R +V+ GR GKS+ N+++G+ S S T+T + +++ L
Sbjct: 24 YTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNV--SIVSDYAGTTTDPVYKSMELHP 81
Query: 68 GQVVNVIDTPGLFD 81
V ++DTPGL D
Sbjct: 82 IGPVTLVDTPGLDD 95
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
Length = 1252
Score = 31.6 bits (70), Expect = 0.54, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 173 ATKLRDQQ------FEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTR 226
A K RD++ F V + + ++ KEQM+++ ++Q+ I ++ESK T
Sbjct: 670 ALKERDEKWKEVYSFIVSNWMTKINTQFNKRKEQMYQALQNQVNAIKTIIESKYNSYTLE 729
Query: 227 LEQQLAEEQAARLKAEEVAQLAQMKSNDEIRKLREN 262
+ +L + + E+ Q + N+ R L E+
Sbjct: 730 EKNELTNKYDIKQIENELNQKVSIAMNNIDRFLTES 765
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 19 ERTVVLVGRTGNGKSATGNSI----LGRRAFKSRASSSGVTSTCEMQRTVLKDGQV---V 71
E T+++VG +G GKS NS+ L + + T E + ++K+G V +
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 90
Query: 72 NVIDTPGLFD 81
++DTPG D
Sbjct: 91 TIVDTPGFGD 100
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 16 SNGERTVVLVGRTGNGKSATGNSI----LGRRAFKSRASSSGVTSTCEMQRTVLKDGQV- 70
S E T+++VG +G GKS NS+ L + + T E + ++K+G V
Sbjct: 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQ 64
Query: 71 --VNVIDTPGLFD 81
+ ++DTPG D
Sbjct: 65 LLLTIVDTPGFGD 77
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 20 RTVVLVGRTGNGKSATGNSIL---GR-------------RAFKSRASSSGVTSTCEMQRT 63
R +V+ GK+ T IL GR F + G+T T +
Sbjct: 13 RNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 64 VLKDGQVVNVIDTPGLFDFS 83
KD ++ N+IDTPG DF+
Sbjct: 73 FWKDHRI-NIIDTPGHVDFT 91
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI--DTPG 78
V + G TG+GKS+ N++ G + A+ +GV M+R K + NV+ D PG
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPG 129
Query: 79 L 79
+
Sbjct: 130 I 130
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI--DTPG 78
V + G TG+GKS+ N++ G + A+ +GV M+R K + NV+ D PG
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPG 129
Query: 79 L 79
+
Sbjct: 130 I 130
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI--DTPG 78
V + G TG+GKS+ N++ G + A+ +GV M+R K + NV+ D PG
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPG 129
Query: 79 L 79
+
Sbjct: 130 I 130
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI--DTPG 78
V + G TG+GKS+ N++ G + A+ +GV M+R K + NV+ D PG
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPG 129
Query: 79 L 79
+
Sbjct: 130 I 130
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 12/71 (16%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-----VTSTCEMQRT--VLKDGQV--- 70
+++VG++G GKS N++ + SR +SS + T E++ V+++G V
Sbjct: 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMK 61
Query: 71 VNVIDTPGLFD 81
+ VIDTPG D
Sbjct: 62 LTVIDTPGFGD 72
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 19 ERTVVLVGRTGNGKSATGNSI----LGRRAFKSRASSSGVTSTCEMQRTVLKDGQV---V 71
E T+++VG +G GKS NS+ L + + T E + ++K+G V +
Sbjct: 3 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 62
Query: 72 NVIDTPGLFD 81
++DTPG D
Sbjct: 63 TIVDTPGFGD 72
>pdb|3SYV|A Chain A, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|B Chain B, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|C Chain C, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|D Chain D, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|E Chain E, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|F Chain F, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|G Chain G, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|H Chain H, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
Length = 347
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 181 FEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLK 240
F L G+ RE ++ K+ + LKR+ E+ SK T R +++ A+ + + K
Sbjct: 124 FHRQVLGGF--RESRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAK 181
Query: 241 AEEVAQLAQMKSNDEIRKLRENLERAQRETEELRKQAEK 279
A+ S +++RKL+E + R +E E+++ Q E+
Sbjct: 182 ADSSM------SQEQLRKLQERVGRCTKEAEKMKTQYEQ 214
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC--EMQRTVLKDGQVVNVIDTPGL 79
V +VGR GKS N+IL K RA S + T + V DG+ +DT GL
Sbjct: 183 VAIVGRPNVGKSTLFNAILN----KERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
TV++VGR GKS N ++ ++ K+ + +Q TV G+ ++DT G+F
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKK--KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVF 60
Query: 81 D 81
D
Sbjct: 61 D 61
>pdb|2WUJ|A Chain A, Diviva N-Terminal Domain
pdb|2WUJ|B Chain B, Diviva N-Terminal Domain
Length = 57
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 185 SLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRL 227
S +GY + E++E Q+ K YE L++ TE+ E+K+ E R+
Sbjct: 16 SFRGYDEDEVNEFLAQVRKDYEIVLRKKTEL-EAKVNELDERI 57
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With
The Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of
4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of
4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And
Mld-Loading (30s Subunit)
Length = 691
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+IDTPG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+IDTPG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With
Ef-G, Gdp And Fusidic Acid
Length = 691
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+IDTPG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+IDTPG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|3QE6|A Chain A, Mouse Pacsin 3 F-Bar Domain Structure
pdb|3QE6|B Chain B, Mouse Pacsin 3 F-Bar Domain Structure
Length = 304
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 181 FEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLK 240
F L G+ RE ++ K+ + LKR+ E+ SK T R +++ A+ + + K
Sbjct: 118 FHRPVLGGF--RESRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAK 175
Query: 241 AEEVAQLAQMKSNDEIRKLRENLERAQRETEELRKQAEK 279
A+ S +++RKL+E + R +E E+++ Q E+
Sbjct: 176 ADSSM------SQEQLRKLQERVGRCTKEAEKMKTQYEQ 208
>pdb|3M3W|A Chain A, Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutant
pdb|3M3W|B Chain B, Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutant
Length = 320
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 203 KSYEDQLKRITEMVESKLKETTTRLEQQLAEEQAARLKAEEVAQLAQMKSNDEIRKLREN 262
K+ + LKR+ E+ SK T R +++ A+ + + KA+ S +++RKL+E
Sbjct: 138 KAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSM------SQEQLRKLQER 191
Query: 263 LERAQRETEELRKQAEK 279
+ R +E E+++ Q E+
Sbjct: 192 VGRCTKEAEKMKTQYEQ 208
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In
Complex With Dna
Length = 387
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV 54
PSN +L G TG GK+A +L R ++RASS GV
Sbjct: 44 PSNA----LLYGLTGTGKTAVARLVL--RRLEARASSLGV 77
>pdb|2WUK|A Chain A, Diviva N-Terminal Domain, F17a Mutant
pdb|2WUK|B Chain B, Diviva N-Terminal Domain, F17a Mutant
pdb|2WUK|C Chain C, Diviva N-Terminal Domain, F17a Mutant
pdb|2WUK|D Chain D, Diviva N-Terminal Domain, F17a Mutant
Length = 57
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 185 SLKGYSKREISELKEQMHKSYEDQLKRITEMVESKLKETTTRL 227
S +GY + E++E Q+ K YE L++ TE+ E+K+ E R+
Sbjct: 16 SARGYDEDEVNEFLAQVRKDYEIVLRKKTEL-EAKVNELDERI 57
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Query: 25 VGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84
+G G + T N++L R+ + +G+TS + VN+IDTPG DF A
Sbjct: 32 LGSVDKGTTRTDNTLLERQ--RGITIQTGITS-------FQWENTKVNIIDTPGHMDFLA 82
Query: 85 GSEFVGKEIVKCIGM---------AKDGIHA 106
E+ + + + AKDG+ A
Sbjct: 83 -------EVYRSLSVLDGAILLISAKDGVQA 106
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVV-----N 72
G + V +VG T GKS + + R + + V +T T L + +
Sbjct: 159 GGKDVYVVGCTNVGKS----TFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214
Query: 73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKD 102
+ DTPG+ + + +VGK+ +K I K+
Sbjct: 215 LYDTPGIINHHQXAHYVGKQSLKLITPTKE 244
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
V ++G +GK+ + + R+ + + G+T L G+ + +DTPG
Sbjct: 6 VVTIMGHVDHGKTTLLDKL--RKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHA 63
Query: 81 DFSA----GSEFVGKEIVKCIGMAKDGI 104
FSA G++ +IV + A DG+
Sbjct: 64 AFSAMRARGTQVT--DIVILVVAADDGV 89
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 53 GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
G++ T + + +D +VVN++DTPG DFS
Sbjct: 85 GISVTTSVMQFPYRD-RVVNLLDTPGHQDFS 114
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDT 76
G +T+VL+G +G G+S N++L + K V T R +DG+ + I T
Sbjct: 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYP---VPYTTRPPRKSEEDGKEYHFIST 73
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 67 DGQVVNVIDTPGLFDFS 83
+G VN+IDTPG DF+
Sbjct: 73 EGHRVNIIDTPGHVDFT 89
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 67 DGQVVNVIDTPGLFDFS 83
+G VN+IDTPG DF+
Sbjct: 73 EGHRVNIIDTPGHVDFT 89
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVV------- 71
E T+ +VG +G GKS NS+ + R S +++RTV + V
Sbjct: 18 EFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAE---KIERTVQIEASTVEIEERGV 74
Query: 72 ----NVIDTPGLFD 81
V+DTPG D
Sbjct: 75 KLRLTVVDTPGYGD 88
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
VVL+G G GKS N G S S V +RT++ DG+ +I
Sbjct: 9 VVLIGEQGVGKSTLANIFAG--VHDSMDSDXEVLGEDTYERTLMVDGESATII 59
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
VVL+G G GKS N G S S V +RT++ DG+ +I
Sbjct: 9 VVLIGEQGVGKSTLANIFAG--VHDSMDSDXEVLGEDTYERTLMVDGESATII 59
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVT---STCEMQRTVLKDGQVVNVIDTPG 78
+ L+G GKS N++ G + + GVT E + +G+ V+D PG
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVY--IGNWPGVTVEKKEGEFEY----NGEKFKVVDLPG 63
Query: 79 LFDFSAGS 86
++ +A S
Sbjct: 64 VYSLTANS 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,954,978
Number of Sequences: 62578
Number of extensions: 239488
Number of successful extensions: 882
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 142
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)