Query 023214
Match_columns 285
No_of_seqs 248 out of 2844
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:22:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 3.2E-29 7E-34 205.9 16.3 140 20-163 1-140 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 99.9 2.1E-26 4.6E-31 187.3 18.2 154 20-188 1-154 (196)
3 TIGR00991 3a0901s02IAP34 GTP-b 99.9 2.1E-20 4.5E-25 158.4 17.1 152 19-175 38-190 (313)
4 TIGR00993 3a0901s04IAP86 chlor 99.8 3E-19 6.4E-24 162.8 18.2 151 20-174 119-277 (763)
5 cd01853 Toc34_like Toc34-like 99.8 7.4E-19 1.6E-23 147.0 15.8 131 19-153 31-165 (249)
6 COG1159 Era GTPase [General fu 99.8 1.6E-18 3.4E-23 144.1 14.6 124 20-153 7-130 (298)
7 COG1160 Predicted GTPases [Gen 99.8 5.4E-18 1.2E-22 148.4 15.3 149 20-178 4-152 (444)
8 COG5019 CDC3 Septin family pro 99.8 1.8E-16 3.8E-21 135.1 21.8 133 13-152 17-177 (373)
9 PF01926 MMR_HSR1: 50S ribosom 99.7 4.6E-17 1E-21 121.1 13.6 116 21-146 1-116 (116)
10 PRK15494 era GTPase Era; Provi 99.7 5.7E-16 1.2E-20 135.9 17.2 147 6-162 34-185 (339)
11 PF02421 FeoB_N: Ferrous iron 99.7 1.5E-16 3.3E-21 122.9 11.0 119 21-152 2-120 (156)
12 TIGR00436 era GTP-binding prot 99.7 5.3E-16 1.1E-20 132.3 15.4 121 21-152 2-122 (270)
13 PRK00089 era GTPase Era; Revie 99.7 6.4E-16 1.4E-20 133.5 15.4 122 20-151 6-127 (292)
14 TIGR03598 GTPase_YsxC ribosome 99.7 3E-15 6.6E-20 119.9 18.0 125 18-152 17-144 (179)
15 COG0218 Predicted GTPase [Gene 99.7 2.4E-15 5.1E-20 118.8 16.1 125 18-152 23-150 (200)
16 COG0488 Uup ATPase components 99.7 2.5E-16 5.5E-21 144.1 12.1 183 2-196 14-242 (530)
17 cd01850 CDC_Septin CDC/Septin. 99.7 2.8E-15 6E-20 127.8 16.8 128 18-152 3-158 (276)
18 cd04163 Era Era subfamily. Er 99.7 4.9E-15 1.1E-19 116.4 15.6 122 20-151 4-125 (168)
19 cd01886 EF-G Elongation factor 99.7 3.2E-16 6.9E-21 133.0 8.9 196 21-235 1-222 (270)
20 cd01894 EngA1 EngA1 subfamily. 99.7 1.7E-15 3.6E-20 118.3 12.4 120 23-152 1-120 (157)
21 cd01895 EngA2 EngA2 subfamily. 99.7 5.4E-15 1.2E-19 117.1 15.4 127 19-152 2-128 (174)
22 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5.2E-15 1.1E-19 115.3 14.8 121 20-152 2-122 (157)
23 KOG2655 Septin family protein 99.7 8.8E-15 1.9E-19 125.8 17.3 147 4-159 5-178 (366)
24 cd01897 NOG NOG1 is a nucleola 99.6 6.2E-15 1.3E-19 116.6 14.6 124 20-152 1-128 (168)
25 PF00735 Septin: Septin; Inte 99.6 3.5E-15 7.6E-20 127.0 13.9 136 19-163 4-166 (281)
26 TIGR03594 GTPase_EngA ribosome 99.6 6.1E-15 1.3E-19 134.1 16.1 122 21-152 1-122 (429)
27 cd01898 Obg Obg subfamily. Th 99.6 5.7E-15 1.2E-19 117.0 13.7 125 21-152 2-129 (170)
28 cd01878 HflX HflX subfamily. 99.6 1.1E-14 2.4E-19 119.1 15.6 126 20-152 42-168 (204)
29 PRK00093 GTP-binding protein D 99.6 1.1E-14 2.4E-19 132.6 16.2 132 20-162 2-133 (435)
30 KOG3859 Septins (P-loop GTPase 99.6 7.8E-14 1.7E-18 114.3 19.2 136 10-152 33-191 (406)
31 PRK03003 GTP-binding protein D 99.6 1.3E-14 2.8E-19 133.1 16.5 124 18-151 37-160 (472)
32 cd04104 p47_IIGP_like p47 (47- 99.6 9.9E-15 2.1E-19 118.7 13.0 118 20-152 2-122 (197)
33 cd04166 CysN_ATPS CysN_ATPS su 99.6 2.3E-14 5E-19 117.6 15.1 116 21-152 1-145 (208)
34 COG1084 Predicted GTPase [Gene 99.6 1.8E-14 3.9E-19 121.1 14.5 124 19-152 168-295 (346)
35 PRK00093 GTP-binding protein D 99.6 2.6E-14 5.7E-19 130.1 16.8 127 19-152 173-299 (435)
36 COG0488 Uup ATPase components 99.6 4.7E-16 1E-20 142.3 5.1 152 4-170 335-491 (530)
37 PRK11147 ABC transporter ATPas 99.6 2.1E-15 4.6E-20 143.0 9.7 157 3-170 331-492 (635)
38 COG1160 Predicted GTPases [Gen 99.6 7.6E-15 1.6E-19 128.8 12.2 136 19-161 178-313 (444)
39 cd04171 SelB SelB subfamily. 99.6 4.4E-14 9.4E-19 111.1 15.3 116 21-152 2-119 (164)
40 PRK00454 engB GTP-binding prot 99.6 9.6E-14 2.1E-18 112.7 17.2 125 18-152 23-150 (196)
41 cd01884 EF_Tu EF-Tu subfamily. 99.6 4.1E-14 8.8E-19 114.6 14.6 117 20-152 3-133 (195)
42 TIGR03594 GTPase_EngA ribosome 99.6 4.4E-14 9.5E-19 128.5 16.3 124 20-150 173-296 (429)
43 TIGR03156 GTP_HflX GTP-binding 99.6 4.7E-14 1E-18 124.0 15.0 126 20-152 190-316 (351)
44 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 7.1E-14 1.5E-18 110.4 14.3 115 20-152 1-117 (168)
45 PRK12298 obgE GTPase CgtA; Rev 99.6 7.3E-14 1.6E-18 124.2 15.5 126 21-152 161-290 (390)
46 PRK10636 putative ABC transpor 99.6 7.4E-15 1.6E-19 139.2 9.2 155 2-170 323-482 (638)
47 cd00881 GTP_translation_factor 99.6 5.9E-14 1.3E-18 112.9 13.2 115 21-152 1-129 (189)
48 cd01881 Obg_like The Obg-like 99.6 3.9E-14 8.5E-19 112.7 11.6 122 24-152 1-135 (176)
49 COG3596 Predicted GTPase [Gene 99.6 2E-14 4.4E-19 118.1 9.6 126 17-152 37-163 (296)
50 PF00009 GTP_EFTU: Elongation 99.6 2.2E-14 4.9E-19 115.8 9.8 115 19-150 3-135 (188)
51 cd01864 Rab19 Rab19 subfamily. 99.6 1.4E-13 3.1E-18 108.6 14.2 117 20-152 4-123 (165)
52 cd01866 Rab2 Rab2 subfamily. 99.6 1.4E-13 2.9E-18 109.1 14.1 117 20-151 5-123 (168)
53 cd04124 RabL2 RabL2 subfamily. 99.6 7.5E-14 1.6E-18 109.8 12.4 115 20-150 1-117 (161)
54 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.5E-13 3.2E-18 124.4 15.7 122 20-152 204-325 (442)
55 cd01888 eIF2_gamma eIF2-gamma 99.6 9E-14 1.9E-18 113.6 13.1 117 21-152 2-152 (203)
56 PRK09518 bifunctional cytidyla 99.5 1.6E-13 3.5E-18 131.6 16.7 123 20-152 276-398 (712)
57 KOG1547 Septin CDC10 and relat 99.5 1.8E-13 3.8E-18 110.0 14.1 131 15-152 42-199 (336)
58 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1E-13 2.2E-18 109.5 12.2 119 21-152 1-122 (167)
59 cd01879 FeoB Ferrous iron tran 99.5 1.5E-13 3.3E-18 107.3 13.0 116 24-152 1-116 (158)
60 PRK12299 obgE GTPase CgtA; Rev 99.5 3.2E-13 7E-18 117.9 16.3 127 20-152 159-286 (335)
61 cd01861 Rab6 Rab6 subfamily. 99.5 2.2E-13 4.8E-18 106.9 13.9 115 21-151 2-119 (161)
62 PRK03003 GTP-binding protein D 99.5 1.9E-13 4.1E-18 125.4 15.3 125 19-152 211-337 (472)
63 cd04113 Rab4 Rab4 subfamily. 99.5 1.5E-13 3.2E-18 107.9 12.7 116 21-151 2-119 (161)
64 PRK11058 GTPase HflX; Provisio 99.5 2.1E-13 4.4E-18 122.8 15.1 126 20-152 198-324 (426)
65 cd04168 TetM_like Tet(M)-like 99.5 1.7E-13 3.6E-18 114.4 13.5 115 21-152 1-131 (237)
66 COG0486 ThdF Predicted GTPase 99.5 1.8E-13 4E-18 120.5 13.8 125 15-152 215-339 (454)
67 cd04169 RF3 RF3 subfamily. Pe 99.5 2.8E-13 6.1E-18 114.9 14.6 116 20-152 3-138 (267)
68 cd04122 Rab14 Rab14 subfamily. 99.5 3.4E-13 7.4E-18 106.5 14.1 115 20-152 3-122 (166)
69 cd04119 RJL RJL (RabJ-Like) su 99.5 2.2E-13 4.7E-18 107.4 13.0 117 21-150 2-123 (168)
70 PRK09866 hypothetical protein; 99.5 1.6E-11 3.4E-16 112.6 26.3 85 69-162 230-317 (741)
71 PRK05291 trmE tRNA modificatio 99.5 2.1E-13 4.5E-18 124.0 14.3 120 20-152 216-336 (449)
72 cd01876 YihA_EngB The YihA (En 99.5 6.6E-13 1.4E-17 104.5 15.3 121 22-152 2-125 (170)
73 cd01867 Rab8_Rab10_Rab13_like 99.5 4.3E-13 9.3E-18 106.1 14.1 117 20-151 4-122 (167)
74 cd01865 Rab3 Rab3 subfamily. 99.5 3.5E-13 7.5E-18 106.4 13.4 118 20-152 2-121 (165)
75 cd00880 Era_like Era (E. coli 99.5 6.6E-13 1.4E-17 103.2 14.9 119 24-152 1-119 (163)
76 cd00154 Rab Rab family. Rab G 99.5 2.4E-13 5.2E-18 105.8 12.3 114 20-150 1-118 (159)
77 cd01860 Rab5_related Rab5-rela 99.5 3.6E-13 7.8E-18 105.9 13.3 117 20-151 2-120 (163)
78 TIGR02729 Obg_CgtA Obg family 99.5 4.7E-13 1E-17 116.7 15.0 127 20-152 158-288 (329)
79 cd04154 Arl2 Arl2 subfamily. 99.5 4.2E-13 9.1E-18 106.8 13.6 115 20-152 15-130 (173)
80 cd04170 EF-G_bact Elongation f 99.5 7.2E-14 1.6E-18 119.1 9.7 115 21-152 1-131 (268)
81 cd04142 RRP22 RRP22 subfamily. 99.5 3.2E-13 6.9E-18 109.9 12.9 125 21-151 2-130 (198)
82 PRK12297 obgE GTPase CgtA; Rev 99.5 6.7E-13 1.4E-17 118.8 16.0 124 21-150 160-287 (424)
83 cd04140 ARHI_like ARHI subfami 99.5 2.7E-13 5.9E-18 107.0 12.1 119 20-151 2-122 (165)
84 cd01891 TypA_BipA TypA (tyrosi 99.5 5E-13 1.1E-17 108.5 13.9 116 20-152 3-132 (194)
85 cd04115 Rab33B_Rab33A Rab33B/R 99.5 5E-13 1.1E-17 106.1 13.6 118 20-151 3-123 (170)
86 PF00350 Dynamin_N: Dynamin fa 99.5 9.1E-14 2E-18 110.1 9.2 115 22-147 1-168 (168)
87 cd04161 Arl2l1_Arl13_like Arl2 99.5 7.9E-13 1.7E-17 104.7 14.6 114 21-152 1-115 (167)
88 KOG0084 GTPase Rab1/YPT1, smal 99.5 3E-13 6.6E-18 105.5 11.6 118 20-152 10-129 (205)
89 cd01889 SelB_euk SelB subfamil 99.5 4.8E-13 1E-17 108.4 13.2 116 21-152 2-135 (192)
90 cd01863 Rab18 Rab18 subfamily. 99.5 4.3E-13 9.2E-18 105.3 12.5 117 21-151 2-120 (161)
91 smart00053 DYNc Dynamin, GTPas 99.5 1.7E-12 3.7E-17 107.7 16.5 137 20-162 27-216 (240)
92 cd04145 M_R_Ras_like M-Ras/R-R 99.5 3.6E-13 7.7E-18 106.0 12.0 118 19-152 2-122 (164)
93 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 5.1E-13 1.1E-17 105.5 12.9 117 20-152 3-122 (166)
94 PRK04213 GTP-binding protein; 99.5 1.4E-12 3.1E-17 106.3 15.9 122 19-152 9-145 (201)
95 cd01868 Rab11_like Rab11-like. 99.5 5.7E-13 1.2E-17 105.1 13.0 116 20-151 4-122 (165)
96 smart00175 RAB Rab subfamily o 99.5 5.3E-13 1.2E-17 104.9 12.7 116 20-151 1-119 (164)
97 cd04155 Arl3 Arl3 subfamily. 99.5 1.2E-12 2.6E-17 104.0 14.5 116 19-152 14-130 (173)
98 PRK09518 bifunctional cytidyla 99.5 9.3E-13 2E-17 126.4 16.2 125 19-152 450-576 (712)
99 cd04106 Rab23_lke Rab23-like s 99.5 1.1E-12 2.3E-17 103.1 13.9 114 21-152 2-121 (162)
100 cd04157 Arl6 Arl6 subfamily. 99.5 8E-13 1.7E-17 103.7 13.1 117 21-152 1-119 (162)
101 cd00877 Ran Ran (Ras-related n 99.5 5.4E-13 1.2E-17 105.5 12.1 113 21-151 2-118 (166)
102 cd04159 Arl10_like Arl10-like 99.5 8.7E-13 1.9E-17 102.7 13.1 114 22-152 2-116 (159)
103 cd04112 Rab26 Rab26 subfamily. 99.5 7.6E-13 1.6E-17 107.1 12.9 117 20-151 1-120 (191)
104 cd04136 Rap_like Rap-like subf 99.5 6.2E-13 1.3E-17 104.5 12.0 116 20-151 2-120 (163)
105 cd04123 Rab21 Rab21 subfamily. 99.5 9.4E-13 2E-17 103.2 13.0 116 21-151 2-119 (162)
106 PRK12296 obgE GTPase CgtA; Rev 99.5 1.5E-12 3.3E-17 118.1 16.0 126 20-152 160-299 (500)
107 CHL00071 tufA elongation facto 99.5 6.7E-13 1.5E-17 119.5 13.7 119 18-152 11-143 (409)
108 cd04158 ARD1 ARD1 subfamily. 99.5 1.1E-12 2.4E-17 104.1 13.3 114 21-152 1-115 (169)
109 cd00879 Sar1 Sar1 subfamily. 99.5 1.4E-12 3E-17 105.4 13.9 114 20-151 20-134 (190)
110 TIGR00487 IF-2 translation ini 99.5 1.6E-12 3.6E-17 121.1 15.9 124 20-161 88-211 (587)
111 cd04138 H_N_K_Ras_like H-Ras/N 99.5 9.2E-13 2E-17 103.2 12.2 116 20-152 2-121 (162)
112 cd00878 Arf_Arl Arf (ADP-ribos 99.5 1.1E-12 2.3E-17 102.7 12.5 114 21-152 1-115 (158)
113 PRK05306 infB translation init 99.5 8.8E-13 1.9E-17 125.8 14.1 114 20-152 291-404 (787)
114 cd04110 Rab35 Rab35 subfamily. 99.5 1.7E-12 3.8E-17 105.7 14.1 118 19-152 6-125 (199)
115 cd04114 Rab30 Rab30 subfamily. 99.5 1.3E-12 2.8E-17 103.4 12.9 117 20-152 8-127 (169)
116 cd04127 Rab27A Rab27a subfamil 99.5 1.9E-12 4.1E-17 103.6 14.0 118 20-151 5-134 (180)
117 cd01890 LepA LepA subfamily. 99.5 1.1E-12 2.4E-17 104.8 12.7 116 20-151 1-133 (179)
118 cd04125 RabA_like RabA-like su 99.5 1.3E-12 2.7E-17 105.5 12.9 117 20-152 1-120 (188)
119 cd00157 Rho Rho (Ras homology) 99.5 7.4E-13 1.6E-17 104.9 11.4 116 20-152 1-119 (171)
120 cd04149 Arf6 Arf6 subfamily. 99.5 1.5E-12 3.3E-17 103.2 13.1 113 20-151 10-124 (168)
121 smart00178 SAR Sar1p-like memb 99.5 1.7E-12 3.6E-17 104.5 13.5 114 20-151 18-132 (184)
122 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 1.3E-12 2.8E-17 106.6 13.0 116 20-150 1-123 (201)
123 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 1.5E-12 3.3E-17 102.7 12.9 112 22-152 2-114 (164)
124 cd04101 RabL4 RabL4 (Rab-like4 99.5 1.9E-12 4.1E-17 101.9 13.5 115 21-152 2-122 (164)
125 PRK12317 elongation factor 1-a 99.5 1.2E-12 2.6E-17 118.7 13.9 117 19-151 6-153 (425)
126 cd01893 Miro1 Miro1 subfamily. 99.5 1.4E-12 3.1E-17 103.1 12.6 114 21-152 2-118 (166)
127 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 1.8E-12 3.9E-17 103.0 13.2 116 21-152 2-121 (170)
128 cd04109 Rab28 Rab28 subfamily. 99.5 1.4E-12 3E-17 107.6 13.0 116 21-151 2-123 (215)
129 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 2.1E-12 4.6E-17 102.9 13.6 114 20-151 16-130 (174)
130 cd01862 Rab7 Rab7 subfamily. 99.5 2E-12 4.3E-17 102.5 13.4 117 21-151 2-123 (172)
131 PLN03071 GTP-binding nuclear p 99.5 1.1E-12 2.4E-17 108.5 12.3 115 19-151 13-131 (219)
132 cd04120 Rab12 Rab12 subfamily. 99.5 2.4E-12 5.3E-17 104.9 14.1 115 21-151 2-119 (202)
133 cd01885 EF2 EF2 (for archaea a 99.5 1.1E-12 2.4E-17 108.1 12.1 115 20-150 1-138 (222)
134 smart00173 RAS Ras subfamily o 99.5 1E-12 2.2E-17 103.4 11.5 115 21-151 2-119 (164)
135 PLN03110 Rab GTPase; Provision 99.4 1.6E-12 3.5E-17 107.3 13.1 117 20-151 13-131 (216)
136 cd04131 Rnd Rnd subfamily. Th 99.4 1.3E-12 2.9E-17 104.4 12.2 114 20-151 2-119 (178)
137 cd04156 ARLTS1 ARLTS1 subfamil 99.4 1.8E-12 3.8E-17 101.6 12.7 114 21-151 1-115 (160)
138 cd04151 Arl1 Arl1 subfamily. 99.4 2E-12 4.3E-17 101.3 12.9 113 21-152 1-115 (158)
139 cd04175 Rap1 Rap1 subgroup. T 99.4 1.3E-12 2.8E-17 103.0 11.6 115 20-151 2-120 (164)
140 cd04134 Rho3 Rho3 subfamily. 99.4 1.2E-12 2.6E-17 105.8 11.7 115 20-152 1-119 (189)
141 cd01896 DRG The developmentall 99.4 3.3E-12 7.1E-17 106.5 14.5 88 21-115 2-89 (233)
142 cd04117 Rab15 Rab15 subfamily. 99.4 2.3E-12 4.9E-17 101.4 12.8 113 21-151 2-119 (161)
143 cd04176 Rap2 Rap2 subgroup. T 99.4 1.9E-12 4.1E-17 101.8 12.4 116 20-151 2-120 (163)
144 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 2.1E-12 4.6E-17 103.6 12.7 115 19-151 5-123 (182)
145 cd04132 Rho4_like Rho4-like su 99.4 1.8E-12 3.8E-17 104.5 12.2 114 20-151 1-119 (187)
146 smart00177 ARF ARF-like small 99.4 3.1E-12 6.6E-17 102.1 13.4 113 20-151 14-128 (175)
147 smart00174 RHO Rho (Ras homolo 99.4 1.1E-12 2.5E-17 104.2 10.9 112 22-152 1-117 (174)
148 PLN03108 Rab family protein; P 99.4 2.6E-12 5.7E-17 105.6 13.3 116 20-151 7-125 (210)
149 PRK12735 elongation factor Tu; 99.4 2.3E-12 4.9E-17 115.7 13.9 118 19-152 12-143 (396)
150 cd04126 Rab20 Rab20 subfamily. 99.4 2.2E-12 4.8E-17 106.3 12.7 113 20-151 1-114 (220)
151 PF08477 Miro: Miro-like prote 99.4 2.6E-13 5.5E-18 101.1 6.6 116 21-148 1-119 (119)
152 cd04150 Arf1_5_like Arf1-Arf5- 99.4 4.5E-12 9.7E-17 99.5 13.9 113 21-152 2-116 (159)
153 cd01874 Cdc42 Cdc42 subfamily. 99.4 4E-12 8.6E-17 101.5 13.8 114 20-152 2-120 (175)
154 PTZ00369 Ras-like protein; Pro 99.4 2E-12 4.2E-17 104.5 12.1 116 20-151 6-124 (189)
155 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 3.2E-12 7E-17 102.7 13.2 117 20-151 4-123 (183)
156 cd04118 Rab24 Rab24 subfamily. 99.4 4.1E-12 9E-17 102.9 14.0 114 20-151 1-119 (193)
157 TIGR01394 TypA_BipA GTP-bindin 99.4 3.5E-12 7.7E-17 119.2 15.2 116 20-152 2-131 (594)
158 cd04121 Rab40 Rab40 subfamily. 99.4 2.9E-12 6.3E-17 103.4 12.8 115 20-151 7-124 (189)
159 cd04116 Rab9 Rab9 subfamily. 99.4 4.3E-12 9.4E-17 100.5 13.5 119 20-151 6-128 (170)
160 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.4 3.8E-12 8.2E-17 101.3 13.1 115 20-151 3-121 (172)
161 KOG1423 Ras-like GTPase ERA [C 99.4 2.1E-12 4.6E-17 107.4 11.8 128 19-152 72-200 (379)
162 cd00876 Ras Ras family. The R 99.4 4.4E-12 9.6E-17 99.1 13.2 115 21-151 1-118 (160)
163 cd04102 RabL3 RabL3 (Rab-like3 99.4 4.2E-12 9E-17 103.3 13.3 116 21-151 2-143 (202)
164 cd04111 Rab39 Rab39 subfamily. 99.4 4.2E-12 9E-17 104.4 13.3 118 20-151 3-123 (211)
165 CHL00189 infB translation init 99.4 4.1E-12 9E-17 120.3 15.0 115 20-152 245-362 (742)
166 cd04135 Tc10 TC10 subfamily. 99.4 3.8E-12 8.3E-17 101.2 12.7 114 20-152 1-119 (174)
167 PLN03118 Rab family protein; P 99.4 2.2E-12 4.8E-17 106.1 11.7 118 20-152 15-135 (211)
168 cd01883 EF1_alpha Eukaryotic e 99.4 4.7E-12 1E-16 104.7 13.7 115 21-151 1-151 (219)
169 cd04144 Ras2 Ras2 subfamily. 99.4 2.2E-12 4.7E-17 104.4 11.4 116 21-151 1-120 (190)
170 COG2262 HflX GTPases [General 99.4 5.8E-12 1.3E-16 109.3 14.4 128 18-152 191-319 (411)
171 cd04148 RGK RGK subfamily. Th 99.4 3.5E-12 7.5E-17 105.6 12.6 117 21-152 2-121 (221)
172 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 4E-12 8.7E-17 104.9 12.8 114 20-151 2-119 (222)
173 cd04146 RERG_RasL11_like RERG/ 99.4 1.9E-12 4.1E-17 102.1 10.4 117 21-151 1-120 (165)
174 PRK10512 selenocysteinyl-tRNA- 99.4 1E-11 2.2E-16 116.6 17.0 117 21-152 2-119 (614)
175 PRK09554 feoB ferrous iron tra 99.4 5.4E-12 1.2E-16 121.0 15.4 122 20-152 4-127 (772)
176 TIGR00475 selB selenocysteine- 99.4 1.2E-11 2.6E-16 115.7 17.3 115 21-152 2-118 (581)
177 cd04177 RSR1 RSR1 subgroup. R 99.4 5.6E-12 1.2E-16 99.8 13.0 118 20-152 2-121 (168)
178 PRK00049 elongation factor Tu; 99.4 5E-12 1.1E-16 113.4 14.1 116 19-151 12-142 (396)
179 PRK00007 elongation factor G; 99.4 4.4E-12 9.6E-17 121.3 14.5 118 18-152 9-142 (693)
180 PLN00223 ADP-ribosylation fact 99.4 6.3E-12 1.4E-16 100.9 13.2 114 20-152 18-133 (181)
181 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 5.1E-12 1.1E-16 104.9 13.0 114 20-151 14-131 (232)
182 PRK12736 elongation factor Tu; 99.4 7.2E-12 1.6E-16 112.4 15.0 118 19-152 12-143 (394)
183 cd04130 Wrch_1 Wrch-1 subfamil 99.4 3.6E-12 7.9E-17 101.4 11.5 115 20-152 1-119 (173)
184 PRK12739 elongation factor G; 99.4 3.6E-12 7.7E-17 122.0 13.4 118 18-152 7-140 (691)
185 PTZ00133 ADP-ribosylation fact 99.4 8E-12 1.7E-16 100.4 13.4 113 20-151 18-132 (182)
186 PLN03127 Elongation factor Tu; 99.4 5.3E-12 1.1E-16 114.5 13.7 118 19-152 61-192 (447)
187 cd04147 Ras_dva Ras-dva subfam 99.4 2.7E-12 5.8E-17 104.5 10.8 115 21-151 1-118 (198)
188 PRK15467 ethanolamine utilizat 99.4 2.2E-12 4.7E-17 101.2 9.8 105 20-152 2-106 (158)
189 TIGR00484 EF-G translation elo 99.4 6.1E-12 1.3E-16 120.4 14.8 118 18-152 9-142 (689)
190 TIGR02528 EutP ethanolamine ut 99.4 2E-12 4.3E-17 99.4 9.1 101 21-151 2-102 (142)
191 cd01870 RhoA_like RhoA-like su 99.4 6.6E-12 1.4E-16 99.9 12.4 114 20-152 2-120 (175)
192 PRK10218 GTP-binding protein; 99.4 6.3E-12 1.4E-16 117.4 13.9 117 19-152 5-135 (607)
193 cd01871 Rac1_like Rac1-like su 99.4 5.5E-12 1.2E-16 100.6 11.6 113 20-151 2-119 (174)
194 cd04167 Snu114p Snu114p subfam 99.4 4E-12 8.7E-17 104.7 11.1 115 20-150 1-136 (213)
195 cd04139 RalA_RalB RalA/RalB su 99.4 8.6E-12 1.9E-16 97.9 12.5 117 20-151 1-119 (164)
196 cd04128 Spg1 Spg1p. Spg1p (se 99.4 7.5E-12 1.6E-16 100.5 12.3 112 20-150 1-117 (182)
197 cd04105 SR_beta Signal recogni 99.4 1.4E-11 2.9E-16 100.7 14.0 116 20-152 1-124 (203)
198 cd04133 Rop_like Rop subfamily 99.4 9.4E-12 2E-16 99.3 12.7 114 20-151 2-119 (176)
199 TIGR00503 prfC peptide chain r 99.4 1E-11 2.2E-16 114.6 14.5 118 19-153 11-148 (527)
200 PF05049 IIGP: Interferon-indu 99.4 1.5E-12 3.2E-17 113.7 8.4 118 19-149 35-153 (376)
201 cd01875 RhoG RhoG subfamily. 99.4 7.6E-12 1.6E-16 101.3 12.1 113 20-151 4-121 (191)
202 cd01892 Miro2 Miro2 subfamily. 99.4 1.9E-11 4E-16 97.0 14.1 117 19-151 4-122 (169)
203 TIGR02034 CysN sulfate adenyly 99.4 1.4E-11 3E-16 110.9 14.4 117 20-152 1-148 (406)
204 cd04165 GTPBP1_like GTPBP1-lik 99.4 1.1E-11 2.3E-16 102.6 12.6 116 21-152 1-153 (224)
205 TIGR00485 EF-Tu translation el 99.4 1.5E-11 3.2E-16 110.5 14.5 118 19-152 12-143 (394)
206 cd04137 RheB Rheb (Ras Homolog 99.4 9.8E-12 2.1E-16 99.5 11.9 117 20-151 2-120 (180)
207 PRK05124 cysN sulfate adenylyl 99.4 1.4E-11 3E-16 112.7 14.2 120 17-152 25-175 (474)
208 PLN03126 Elongation factor Tu; 99.4 1.6E-11 3.5E-16 111.9 14.4 118 19-152 81-212 (478)
209 PRK00741 prfC peptide chain re 99.4 1.4E-11 3.1E-16 113.6 14.1 117 19-152 10-146 (526)
210 cd00882 Ras_like_GTPase Ras-li 99.4 3.8E-12 8.2E-17 97.8 8.6 112 24-152 1-117 (157)
211 COG0480 FusA Translation elong 99.3 8.4E-12 1.8E-16 117.5 12.4 118 19-153 10-144 (697)
212 cd04129 Rho2 Rho2 subfamily. 99.3 1.5E-11 3.2E-16 99.2 12.1 113 20-151 2-119 (187)
213 TIGR00231 small_GTP small GTP- 99.3 3.4E-11 7.5E-16 93.3 13.8 117 20-152 2-123 (161)
214 TIGR00483 EF-1_alpha translati 99.3 2.6E-11 5.7E-16 110.0 14.7 117 19-151 7-155 (426)
215 PRK05506 bifunctional sulfate 99.3 2.7E-11 5.9E-16 115.0 15.1 119 17-151 22-171 (632)
216 COG2229 Predicted GTPase [Gene 99.3 2.2E-11 4.8E-16 94.3 11.6 129 20-163 11-148 (187)
217 cd04143 Rhes_like Rhes_like su 99.3 2.9E-11 6.2E-16 101.6 12.9 116 21-151 2-127 (247)
218 PF00025 Arf: ADP-ribosylation 99.3 5.5E-12 1.2E-16 100.6 8.1 116 18-152 13-130 (175)
219 COG1120 FepC ABC-type cobalami 99.3 8.8E-12 1.9E-16 103.6 9.5 142 2-152 13-174 (258)
220 TIGR00491 aIF-2 translation in 99.3 2.4E-11 5.2E-16 113.2 13.4 114 20-151 5-135 (590)
221 KOG0073 GTP-binding ADP-ribosy 99.3 4.6E-11 1E-15 90.5 12.4 115 19-152 16-132 (185)
222 PLN00023 GTP-binding protein; 99.3 3.1E-11 6.7E-16 103.5 12.8 119 20-151 22-165 (334)
223 KOG0080 GTPase Rab18, small G 99.3 1.9E-11 4.1E-16 92.2 9.8 119 20-151 12-131 (209)
224 PTZ00141 elongation factor 1- 99.3 4.6E-11 1E-15 108.5 14.3 116 19-150 7-158 (446)
225 KOG0087 GTPase Rab11/YPT3, sma 99.3 1.6E-11 3.4E-16 97.0 9.2 116 20-151 15-133 (222)
226 COG0370 FeoB Fe2+ transport sy 99.3 4.1E-11 9E-16 110.1 13.2 120 20-152 4-123 (653)
227 TIGR01393 lepA GTP-binding pro 99.3 6.4E-11 1.4E-15 111.0 14.8 117 19-151 3-136 (595)
228 PTZ00132 GTP-binding nuclear p 99.3 4.4E-11 9.4E-16 98.7 12.2 113 20-151 10-127 (215)
229 PRK13351 elongation factor G; 99.3 3.7E-11 7.9E-16 115.3 13.4 117 19-152 8-140 (687)
230 PF00071 Ras: Ras family; Int 99.3 1.9E-11 4.1E-16 96.0 9.3 116 21-151 1-118 (162)
231 smart00176 RAN Ran (Ras-relate 99.3 3.5E-11 7.6E-16 97.9 11.0 109 25-151 1-113 (200)
232 KOG1489 Predicted GTP-binding 99.3 4.1E-11 8.9E-16 100.4 11.3 124 20-152 197-327 (366)
233 KOG0078 GTP-binding protein SE 99.3 4.2E-11 9E-16 94.9 10.8 117 19-151 12-131 (207)
234 PRK05433 GTP-binding protein L 99.3 9.1E-11 2E-15 110.1 14.6 118 19-152 7-141 (600)
235 cd04103 Centaurin_gamma Centau 99.3 7E-11 1.5E-15 92.7 11.7 108 21-150 2-112 (158)
236 PRK04004 translation initiatio 99.3 8.1E-11 1.8E-15 110.0 13.8 113 20-150 7-136 (586)
237 KOG0095 GTPase Rab30, small G 99.3 1.1E-10 2.3E-15 87.1 11.3 118 20-152 8-127 (213)
238 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 1.4E-10 2.9E-15 95.8 13.2 125 21-152 1-126 (232)
239 PTZ00416 elongation factor 2; 99.3 4E-11 8.6E-16 116.7 11.7 118 17-150 17-157 (836)
240 PLN00116 translation elongatio 99.3 5.8E-11 1.3E-15 115.7 12.9 119 16-150 16-163 (843)
241 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.2 1.7E-10 3.7E-15 90.1 12.4 118 20-152 23-143 (221)
242 KOG1145 Mitochondrial translat 99.2 5E-11 1.1E-15 106.3 10.5 117 19-153 153-269 (683)
243 PF10662 PduV-EutP: Ethanolami 99.2 5E-11 1.1E-15 90.2 9.0 101 20-150 2-102 (143)
244 COG1100 GTPase SAR1 and relate 99.2 2.5E-10 5.3E-15 94.3 14.1 116 20-152 6-126 (219)
245 KOG0098 GTPase Rab2, small G p 99.2 4.9E-10 1.1E-14 86.8 14.3 119 19-152 6-126 (216)
246 PRK04000 translation initiatio 99.2 1.6E-10 3.6E-15 104.0 13.7 120 18-152 8-154 (411)
247 TIGR03680 eif2g_arch translati 99.2 1.1E-10 2.3E-15 105.2 12.5 119 19-152 4-149 (406)
248 cd01882 BMS1 Bms1. Bms1 is an 99.2 2.8E-10 6E-15 94.4 13.9 110 19-152 39-148 (225)
249 KOG0092 GTPase Rab5/YPT51 and 99.2 1.4E-10 3.1E-15 90.3 11.2 115 20-151 6-124 (200)
250 KOG0079 GTP-binding protein H- 99.2 1.6E-10 3.4E-15 86.1 10.4 117 20-152 9-127 (198)
251 KOG0462 Elongation factor-type 99.2 1E-10 2.3E-15 104.3 11.2 131 15-161 56-201 (650)
252 PRK10636 putative ABC transpor 99.2 1.7E-10 3.7E-15 109.6 13.3 157 2-170 12-201 (638)
253 KOG1191 Mitochondrial GTPase [ 99.2 1.3E-10 2.7E-15 102.8 11.1 131 15-152 266-404 (531)
254 cd01873 RhoBTB RhoBTB subfamil 99.2 2.3E-10 5E-15 92.8 12.0 115 20-151 3-134 (195)
255 TIGR02836 spore_IV_A stage IV 99.2 1.9E-10 4.2E-15 100.5 12.0 140 3-152 3-195 (492)
256 KOG0927 Predicted transporter 99.2 1.8E-11 3.8E-16 109.3 5.0 148 5-170 404-561 (614)
257 COG0532 InfB Translation initi 99.2 2.2E-10 4.9E-15 102.6 11.9 125 20-162 6-132 (509)
258 TIGR00490 aEF-2 translation el 99.2 1.6E-10 3.5E-15 111.1 11.5 117 19-152 19-153 (720)
259 PLN00043 elongation factor 1-a 99.2 6E-10 1.3E-14 101.2 14.4 116 19-150 7-158 (447)
260 PF09439 SRPRB: Signal recogni 99.2 7.2E-11 1.5E-15 93.4 7.3 118 20-152 4-127 (181)
261 COG5256 TEF1 Translation elong 99.2 1E-09 2.2E-14 95.4 14.8 127 20-162 8-170 (428)
262 COG1217 TypA Predicted membran 99.2 3.7E-10 8.1E-15 99.1 11.5 117 20-153 6-136 (603)
263 KOG0448 Mitofusin 1 GTPase, in 99.2 7.4E-09 1.6E-13 94.9 20.0 131 20-163 110-287 (749)
264 KOG1532 GTPase XAB1, interacts 99.1 6.2E-10 1.3E-14 91.6 11.7 78 70-152 117-196 (366)
265 TIGR00437 feoB ferrous iron tr 99.1 5.8E-10 1.3E-14 104.6 13.0 113 26-151 1-113 (591)
266 COG4108 PrfC Peptide chain rel 99.1 2.8E-10 6E-15 99.2 9.8 121 14-153 9-149 (528)
267 COG0536 Obg Predicted GTPase [ 99.1 9.9E-10 2.1E-14 93.3 12.0 125 21-152 161-290 (369)
268 PRK11147 ABC transporter ATPas 99.1 1.7E-09 3.7E-14 102.9 15.1 156 2-170 14-208 (635)
269 PRK07560 elongation factor EF- 99.1 3.9E-10 8.5E-15 108.7 10.7 119 17-151 18-153 (731)
270 KOG0074 GTP-binding ADP-ribosy 99.1 1.4E-10 3.1E-15 85.7 5.7 131 12-162 10-142 (185)
271 COG1121 ZnuC ABC-type Mn/Zn tr 99.1 5.2E-11 1.1E-15 98.6 3.6 44 5-50 18-61 (254)
272 cd03223 ABCD_peroxisomal_ALDP 99.1 2E-10 4.4E-15 90.7 6.5 43 4-48 14-56 (166)
273 cd01900 YchF YchF subfamily. 99.1 7.8E-10 1.7E-14 93.7 10.2 86 22-113 1-102 (274)
274 COG1163 DRG Predicted GTPase [ 99.1 6.5E-10 1.4E-14 93.7 9.5 95 12-113 56-150 (365)
275 KOG0086 GTPase Rab4, small G p 99.1 1.9E-09 4.2E-14 80.8 10.9 116 20-152 10-129 (214)
276 cd01851 GBP Guanylate-binding 99.1 5.9E-09 1.3E-13 86.3 14.8 106 19-129 7-115 (224)
277 PTZ00258 GTP-binding protein; 99.1 1.3E-09 2.8E-14 96.4 11.5 88 20-113 22-125 (390)
278 PTZ00327 eukaryotic translatio 99.1 1.9E-09 4E-14 97.9 12.6 121 17-152 32-186 (460)
279 KOG1490 GTP-binding protein CR 99.1 4.7E-10 1E-14 99.3 8.5 126 19-152 168-296 (620)
280 cd03293 ABC_NrtD_SsuB_transpor 99.1 6.9E-10 1.5E-14 91.9 8.8 141 4-162 17-175 (220)
281 COG1116 TauB ABC-type nitrate/ 99.1 5.1E-10 1.1E-14 91.7 7.7 46 2-49 14-59 (248)
282 PRK12740 elongation factor G; 99.1 1.8E-09 3.8E-14 103.5 12.7 111 25-152 1-127 (668)
283 PRK09601 GTP-binding protein Y 99.1 1.6E-09 3.4E-14 94.8 11.2 89 20-114 3-107 (364)
284 KOG0066 eIF2-interacting prote 99.1 4E-10 8.6E-15 98.6 7.3 151 2-170 598-756 (807)
285 cd03259 ABC_Carb_Solutes_like 99.1 7.1E-10 1.5E-14 91.3 8.5 44 3-48 12-55 (213)
286 KOG0394 Ras-related GTPase [Ge 99.1 8.5E-10 1.8E-14 85.4 8.1 121 19-152 9-133 (210)
287 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.0 6.8E-10 1.5E-14 85.6 7.3 43 3-47 12-54 (144)
288 COG1131 CcmA ABC-type multidru 99.0 1.4E-10 2.9E-15 99.9 3.8 145 3-162 17-180 (293)
289 PRK11247 ssuB aliphatic sulfon 99.0 9.9E-10 2.1E-14 92.9 8.9 143 3-162 24-177 (257)
290 KOG0093 GTPase Rab3, small G p 99.0 2.5E-09 5.3E-14 79.7 9.7 119 20-152 22-141 (193)
291 cd03230 ABC_DR_subfamily_A Thi 99.0 2.1E-09 4.5E-14 85.6 10.2 43 4-48 13-55 (173)
292 KOG0447 Dynamin-like GTP bindi 99.0 2.1E-08 4.6E-13 89.7 17.3 149 17-170 306-514 (980)
293 cd03261 ABC_Org_Solvent_Resist 99.0 1.3E-09 2.9E-14 91.1 9.3 44 3-48 12-55 (235)
294 KOG0395 Ras-related GTPase [Ge 99.0 1.5E-09 3.3E-14 87.8 9.3 118 20-151 4-122 (196)
295 cd03229 ABC_Class3 This class 99.0 1.5E-09 3.3E-14 86.8 8.9 44 3-48 12-55 (178)
296 TIGR01188 drrA daunorubicin re 99.0 1.2E-09 2.5E-14 94.8 8.8 147 2-163 4-169 (302)
297 cd03269 ABC_putative_ATPase Th 99.0 9.8E-10 2.1E-14 90.3 7.9 44 3-48 12-55 (210)
298 KOG1954 Endocytosis/signaling 99.0 4.2E-08 9E-13 84.1 17.7 128 20-152 59-226 (532)
299 cd03225 ABC_cobalt_CbiO_domain 99.0 4.5E-10 9.6E-15 92.4 5.8 43 4-48 14-56 (211)
300 TIGR02673 FtsE cell division A 99.0 1.6E-09 3.4E-14 89.3 9.1 44 3-48 14-57 (214)
301 PRK11248 tauB taurine transpor 99.0 1.2E-09 2.7E-14 92.3 8.5 142 3-162 13-172 (255)
302 TIGR00960 3a0501s02 Type II (G 99.0 1.7E-09 3.6E-14 89.3 9.0 42 5-48 17-58 (216)
303 PF03193 DUF258: Protein of un 99.0 2.8E-10 6E-15 88.2 4.0 62 20-85 36-103 (161)
304 cd03265 ABC_DrrA DrrA is the A 99.0 1.4E-09 2.9E-14 90.1 8.5 44 3-48 12-55 (220)
305 PRK15064 ABC transporter ATP-b 99.0 4.3E-10 9.3E-15 105.0 5.7 153 3-168 331-488 (530)
306 PLN03073 ABC transporter F fam 99.0 3E-10 6.4E-15 108.8 4.4 152 4-170 522-679 (718)
307 TIGR01288 nodI ATP-binding ABC 99.0 2E-09 4.2E-14 93.5 9.1 146 3-163 16-180 (303)
308 cd03226 ABC_cobalt_CbiO_domain 99.0 2.1E-09 4.6E-14 87.9 8.9 43 4-48 13-55 (205)
309 cd03219 ABC_Mj1267_LivG_branch 99.0 6.7E-10 1.5E-14 92.9 5.9 44 3-48 12-55 (236)
310 TIGR01166 cbiO cobalt transpor 99.0 3.2E-09 6.8E-14 85.8 9.6 45 2-48 3-47 (190)
311 TIGR03608 L_ocin_972_ABC putat 99.0 2.6E-09 5.7E-14 87.4 9.0 44 3-48 10-53 (206)
312 cd03301 ABC_MalK_N The N-termi 99.0 2E-09 4.4E-14 88.6 8.4 44 3-48 12-55 (213)
313 cd03262 ABC_HisP_GlnQ_permease 99.0 2.4E-09 5.3E-14 88.1 8.9 44 3-48 12-55 (213)
314 PRK11819 putative ABC transpor 99.0 4.6E-10 9.9E-15 105.4 5.0 155 3-169 336-496 (556)
315 cd03213 ABCG_EPDR ABCG transpo 99.0 5E-09 1.1E-13 85.0 10.5 43 4-48 22-66 (194)
316 PRK10908 cell division protein 99.0 3.2E-09 7E-14 88.0 9.4 44 3-48 14-57 (222)
317 PRK13546 teichoic acids export 99.0 3.4E-09 7.4E-14 90.0 9.6 43 4-48 37-79 (264)
318 PRK13543 cytochrome c biogenes 99.0 2.5E-09 5.4E-14 88.1 8.5 44 3-48 23-66 (214)
319 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 6.5E-10 1.4E-14 104.3 5.6 155 3-169 334-494 (552)
320 TIGR02868 CydC thiol reductant 99.0 1.3E-09 2.8E-14 101.9 7.5 151 4-162 348-514 (529)
321 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.0 2.6E-09 5.6E-14 88.7 8.5 45 2-48 33-77 (224)
322 KOG0062 ATPase component of AB 99.0 6E-10 1.3E-14 99.1 4.8 141 2-170 91-250 (582)
323 TIGR02315 ABC_phnC phosphonate 99.0 3.8E-09 8.2E-14 88.8 9.5 44 3-48 14-57 (243)
324 cd03218 ABC_YhbG The ABC trans 99.0 1.1E-09 2.5E-14 91.3 6.3 44 3-48 12-55 (232)
325 cd03235 ABC_Metallic_Cations A 99.0 9.5E-10 2.1E-14 90.5 5.7 44 3-48 11-54 (213)
326 cd03231 ABC_CcmA_heme_exporter 99.0 1.3E-09 2.8E-14 89.0 6.3 44 3-48 12-55 (201)
327 PRK11124 artP arginine transpo 99.0 3.8E-09 8.2E-14 88.7 9.3 44 3-48 14-57 (242)
328 cd03228 ABCC_MRP_Like The MRP 99.0 2.8E-09 6.1E-14 84.7 8.0 42 5-48 16-57 (171)
329 cd03266 ABC_NatA_sodium_export 99.0 2.4E-09 5.2E-14 88.5 7.9 42 5-48 19-60 (218)
330 cd01858 NGP_1 NGP-1. Autoanti 99.0 2E-09 4.3E-14 84.3 7.0 55 20-79 103-157 (157)
331 cd03295 ABC_OpuCA_Osmoprotecti 99.0 1E-09 2.2E-14 92.2 5.8 43 4-48 14-56 (242)
332 cd03268 ABC_BcrA_bacitracin_re 99.0 2.7E-09 5.8E-14 87.5 8.0 44 3-48 12-55 (208)
333 cd03256 ABC_PhnC_transporter A 98.9 4.1E-09 8.8E-14 88.5 9.2 43 4-48 14-56 (241)
334 PRK13537 nodulation ABC transp 98.9 4.2E-09 9E-14 91.4 9.4 146 3-163 19-183 (306)
335 PRK10584 putative ABC transpor 98.9 3.5E-09 7.5E-14 88.1 8.6 42 5-48 24-65 (228)
336 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.9 1.3E-09 2.7E-14 90.1 5.9 43 4-48 17-59 (218)
337 PRK09536 btuD corrinoid ABC tr 98.9 6.9E-10 1.5E-14 99.3 4.6 45 2-48 14-58 (402)
338 cd03258 ABC_MetN_methionine_tr 98.9 5E-09 1.1E-13 87.5 9.5 42 5-48 19-60 (233)
339 TIGR01189 ccmA heme ABC export 98.9 3E-09 6.5E-14 86.6 8.0 44 3-48 12-55 (198)
340 COG4988 CydD ABC-type transpor 98.9 3.3E-09 7.1E-14 96.2 8.9 145 3-152 333-492 (559)
341 cd03294 ABC_Pro_Gly_Bertaine T 98.9 1.8E-09 4E-14 92.0 6.9 148 3-162 36-204 (269)
342 cd03263 ABC_subfamily_A The AB 98.9 3.3E-09 7.2E-14 87.8 8.3 145 4-162 15-177 (220)
343 PRK11819 putative ABC transpor 98.9 4.8E-09 1E-13 98.5 10.2 45 3-49 19-63 (556)
344 TIGR02211 LolD_lipo_ex lipopro 98.9 4.7E-09 1E-13 86.9 9.1 43 4-48 18-60 (221)
345 cd03216 ABC_Carb_Monos_I This 98.9 4.3E-09 9.3E-14 82.9 8.3 44 3-48 12-55 (163)
346 cd03246 ABCC_Protease_Secretio 98.9 3.9E-09 8.5E-14 84.0 8.2 43 4-48 15-57 (173)
347 cd03296 ABC_CysA_sulfate_impor 98.9 4.1E-09 8.8E-14 88.4 8.6 44 3-48 14-57 (239)
348 cd03292 ABC_FtsE_transporter F 98.9 5.8E-09 1.3E-13 85.9 9.4 43 4-48 14-56 (214)
349 TIGR01425 SRP54_euk signal rec 98.9 9.6E-08 2.1E-12 85.5 17.6 130 17-158 98-260 (429)
350 PRK13536 nodulation factor exp 98.9 5.6E-09 1.2E-13 91.8 9.6 147 2-163 52-217 (340)
351 TIGR03411 urea_trans_UrtD urea 98.9 1.4E-09 3.1E-14 91.3 5.6 44 3-48 14-57 (242)
352 COG1134 TagH ABC-type polysacc 98.9 4.8E-09 1E-13 85.6 8.4 43 5-49 41-83 (249)
353 TIGR03719 ABC_ABC_ChvD ATP-bin 98.9 6.4E-09 1.4E-13 97.6 10.4 45 3-49 17-61 (552)
354 cd03217 ABC_FeS_Assembly ABC-t 98.9 1.7E-09 3.6E-14 88.2 5.7 39 3-43 12-50 (200)
355 PRK11264 putative amino-acid A 98.9 8.2E-09 1.8E-13 87.1 10.0 44 3-48 15-58 (250)
356 PRK13638 cbiO cobalt transport 98.9 5.8E-09 1.3E-13 89.1 9.2 44 3-48 13-56 (271)
357 cd03224 ABC_TM1139_LivF_branch 98.9 1E-09 2.2E-14 90.9 4.4 44 3-48 12-55 (222)
358 PRK13538 cytochrome c biogenes 98.9 1.4E-09 3.1E-14 88.9 5.1 44 3-48 13-56 (204)
359 TIGR03864 PQQ_ABC_ATP ABC tran 98.9 5.9E-09 1.3E-13 87.2 8.9 45 3-49 13-57 (236)
360 PRK10575 iron-hydroxamate tran 98.9 1.1E-09 2.3E-14 93.3 4.5 44 3-48 23-66 (265)
361 TIGR02203 MsbA_lipidA lipid A 98.9 3.6E-09 7.7E-14 99.9 8.3 150 4-163 345-514 (571)
362 cd03247 ABCC_cytochrome_bd The 98.9 8E-10 1.7E-14 88.4 3.3 42 5-48 16-57 (178)
363 KOG0075 GTP-binding ADP-ribosy 98.9 3.2E-09 7E-14 79.1 6.2 113 20-152 21-137 (186)
364 PRK11629 lolD lipoprotein tran 98.9 6.9E-09 1.5E-13 86.6 9.1 43 4-48 22-64 (233)
365 PRK14250 phosphate ABC transpo 98.9 3.1E-09 6.7E-14 89.2 6.9 145 3-162 15-175 (241)
366 cd03222 ABC_RNaseL_inhibitor T 98.9 6.8E-09 1.5E-13 82.6 8.5 43 3-48 12-54 (177)
367 PRK15064 ABC transporter ATP-b 98.9 1.4E-09 3.1E-14 101.5 5.4 46 2-49 12-57 (530)
368 PRK11174 cysteine/glutathione 98.9 1.8E-09 3.9E-14 102.2 6.0 152 3-163 362-530 (588)
369 PRK11300 livG leucine/isoleuci 98.9 1.5E-09 3.3E-14 91.9 4.9 44 3-48 17-60 (255)
370 PRK10247 putative ABC transpor 98.9 2.6E-09 5.5E-14 88.8 6.1 44 3-48 19-62 (225)
371 cd03267 ABC_NatA_like Similar 98.9 7.2E-09 1.6E-13 86.7 8.8 44 3-48 33-76 (236)
372 TIGR03796 NHPM_micro_ABC1 NHPM 98.9 5E-09 1.1E-13 101.3 8.9 150 4-163 492-660 (710)
373 PRK11831 putative ABC transpor 98.9 7.7E-09 1.7E-13 88.2 9.1 44 3-48 19-62 (269)
374 cd03215 ABC_Carb_Monos_II This 98.9 4.4E-09 9.6E-14 84.4 7.1 41 6-48 15-55 (182)
375 cd03264 ABC_drug_resistance_li 98.9 1.4E-09 3E-14 89.4 4.3 146 3-163 12-175 (211)
376 PRK10895 lipopolysaccharide AB 98.9 2.1E-09 4.5E-14 90.3 5.4 44 3-48 15-58 (241)
377 PRK11000 maltose/maltodextrin 98.9 8.2E-09 1.8E-13 91.8 9.4 45 3-49 15-59 (369)
378 cd03214 ABC_Iron-Siderophores_ 98.9 7.1E-09 1.5E-13 83.1 8.2 42 4-47 12-53 (180)
379 TIGR01978 sufC FeS assembly AT 98.9 5.6E-09 1.2E-13 87.7 7.9 39 3-43 12-50 (243)
380 cd03233 ABC_PDR_domain1 The pl 98.9 6.7E-09 1.5E-13 84.8 8.1 40 3-44 19-58 (202)
381 PRK13657 cyclic beta-1,2-gluca 98.9 5.5E-09 1.2E-13 98.9 8.7 149 4-162 348-515 (588)
382 cd03245 ABCC_bacteriocin_expor 98.9 1.1E-08 2.3E-13 84.7 9.4 43 4-48 17-59 (220)
383 PRK09544 znuC high-affinity zi 98.9 7.5E-09 1.6E-13 87.3 8.6 137 3-162 16-164 (251)
384 TIGR03797 NHPM_micro_ABC2 NHPM 98.9 4.9E-09 1.1E-13 101.0 8.4 152 4-164 466-634 (686)
385 TIGR01184 ntrCD nitrate transp 98.9 9E-09 2E-13 85.8 8.8 137 7-162 1-158 (230)
386 PRK15056 manganese/iron transp 98.9 1E-08 2.3E-13 87.6 9.4 45 3-49 19-63 (272)
387 TIGR03522 GldA_ABC_ATP gliding 98.9 2.1E-09 4.4E-14 93.2 5.0 146 3-163 14-178 (301)
388 cd03232 ABC_PDR_domain2 The pl 98.9 1.7E-08 3.7E-13 81.7 10.2 38 4-43 20-57 (192)
389 PRK13548 hmuV hemin importer A 98.9 3.1E-09 6.6E-14 90.1 6.0 44 3-48 14-57 (258)
390 PRK09602 translation-associate 98.9 2E-08 4.3E-13 89.8 11.4 89 20-114 2-113 (396)
391 TIGR03005 ectoine_ehuA ectoine 98.9 1E-08 2.2E-13 86.6 9.2 44 3-48 12-55 (252)
392 PRK11153 metN DL-methionine tr 98.9 8.9E-09 1.9E-13 90.8 9.0 148 4-163 18-185 (343)
393 PLN03073 ABC transporter F fam 98.9 3.3E-09 7.1E-14 101.7 6.7 40 2-43 188-227 (718)
394 PRK13540 cytochrome c biogenes 98.9 2.5E-09 5.5E-14 87.1 5.1 44 3-48 13-56 (200)
395 PRK10253 iron-enterobactin tra 98.9 2E-09 4.3E-14 91.7 4.6 44 3-48 19-62 (265)
396 PRK15112 antimicrobial peptide 98.9 7.2E-09 1.6E-13 88.3 7.9 44 4-49 26-69 (267)
397 COG1132 MdlB ABC-type multidru 98.9 5.1E-09 1.1E-13 98.7 7.6 149 3-162 341-509 (567)
398 PRK09493 glnQ glutamine ABC tr 98.9 3.3E-09 7.1E-14 89.0 5.6 44 3-48 13-56 (240)
399 PRK13545 tagH teichoic acids e 98.9 9.4E-09 2E-13 93.8 8.9 42 5-48 38-79 (549)
400 PRK11432 fbpC ferric transport 98.9 1.2E-08 2.6E-13 90.0 9.4 145 3-162 18-180 (351)
401 TIGR00972 3a0107s01c2 phosphat 98.9 1.5E-08 3.1E-13 85.5 9.5 42 3-46 13-54 (247)
402 PRK15439 autoinducer 2 ABC tra 98.9 1.1E-08 2.5E-13 95.0 9.6 148 3-162 23-184 (510)
403 cd04178 Nucleostemin_like Nucl 98.9 6.9E-09 1.5E-13 82.2 7.0 55 20-79 118-172 (172)
404 TIGR03740 galliderm_ABC gallid 98.9 1.9E-08 4.1E-13 83.4 10.0 141 3-162 12-168 (223)
405 PRK11176 lipid transporter ATP 98.9 7.9E-09 1.7E-13 97.8 8.6 146 4-163 356-525 (582)
406 TIGR03410 urea_trans_UrtE urea 98.9 1.9E-09 4E-14 89.9 3.9 44 3-48 12-55 (230)
407 PRK11160 cysteine/glutathione 98.9 4.3E-09 9.2E-14 99.3 6.7 150 4-162 353-519 (574)
408 PRK11231 fecE iron-dicitrate t 98.9 1.9E-09 4.2E-14 91.2 4.0 44 3-48 14-57 (255)
409 cd03254 ABCC_Glucan_exporter_l 98.9 4.6E-09 1E-13 87.4 6.2 44 4-49 16-59 (229)
410 cd03298 ABC_ThiQ_thiamine_tran 98.9 1.4E-08 3.1E-13 83.4 9.0 38 9-48 16-53 (211)
411 KOG0070 GTP-binding ADP-ribosy 98.8 1.9E-08 4.1E-13 78.3 9.0 118 16-152 14-133 (181)
412 cd03257 ABC_NikE_OppD_transpor 98.8 6.9E-09 1.5E-13 86.3 7.1 42 5-48 19-60 (228)
413 PRK10619 histidine/lysine/argi 98.8 1.7E-08 3.8E-13 85.5 9.6 44 3-48 17-60 (257)
414 PRK11650 ugpC glycerol-3-phosp 98.8 1.2E-08 2.6E-13 90.2 8.9 44 3-48 16-59 (356)
415 COG3839 MalK ABC-type sugar tr 98.8 5.1E-09 1.1E-13 90.6 6.3 123 6-134 18-151 (338)
416 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1E-08 2.2E-13 78.8 7.3 56 20-80 84-139 (141)
417 COG2274 SunT ABC-type bacterio 98.8 1.1E-08 2.4E-13 97.4 9.1 148 4-163 486-654 (709)
418 KOG0091 GTPase Rab39, small G 98.8 2.5E-08 5.5E-13 75.7 9.1 120 20-152 9-131 (213)
419 cd03260 ABC_PstB_phosphate_tra 98.8 1.2E-08 2.5E-13 84.9 8.1 39 3-43 12-50 (227)
420 cd03253 ABCC_ATM1_transporter 98.8 5.4E-09 1.2E-13 87.4 6.1 43 4-48 14-56 (236)
421 PRK09984 phosphonate/organopho 98.8 1.6E-08 3.4E-13 86.0 9.0 42 3-46 16-57 (262)
422 PRK13632 cbiO cobalt transport 98.8 3.8E-09 8.3E-14 90.2 5.2 43 4-48 22-64 (271)
423 KOG1707 Predicted Ras related/ 98.8 4.2E-08 9.1E-13 88.6 11.9 119 20-153 10-131 (625)
424 KOG0097 GTPase Rab14, small G 98.8 6.6E-08 1.4E-12 71.6 10.9 125 20-159 12-138 (215)
425 TIGR03873 F420-0_ABC_ATP propo 98.8 3.9E-09 8.5E-14 89.4 5.2 44 3-48 13-56 (256)
426 TIGR01186 proV glycine betaine 98.8 2.1E-08 4.5E-13 88.7 9.8 149 2-162 4-173 (363)
427 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.8 7.5E-09 1.6E-13 86.7 6.7 43 4-48 16-58 (238)
428 cd01899 Ygr210 Ygr210 subfamil 98.8 3.6E-08 7.8E-13 85.6 11.0 87 22-114 1-110 (318)
429 PRK13648 cbiO cobalt transport 98.8 4.5E-09 9.8E-14 89.7 5.3 42 5-48 23-64 (269)
430 PRK10762 D-ribose transporter 98.8 7.8E-09 1.7E-13 96.0 7.3 45 3-49 16-60 (501)
431 KOG0057 Mitochondrial Fe/S clu 98.8 3.5E-09 7.5E-14 95.1 4.7 146 4-161 365-530 (591)
432 PRK13541 cytochrome c biogenes 98.8 1.4E-08 3.1E-13 82.3 8.0 42 4-48 14-55 (195)
433 PRK10790 putative multidrug tr 98.8 9.2E-09 2E-13 97.5 7.8 149 4-163 354-521 (592)
434 TIGR01277 thiQ thiamine ABC tr 98.8 1.9E-08 4.2E-13 82.8 8.7 41 6-48 13-53 (213)
435 PRK12288 GTPase RsgA; Reviewed 98.8 1.6E-08 3.4E-13 88.9 8.5 62 20-85 206-273 (347)
436 cd03300 ABC_PotA_N PotA is an 98.8 1.2E-08 2.6E-13 85.1 7.5 44 3-48 12-55 (232)
437 cd03252 ABCC_Hemolysin The ABC 98.8 1.4E-08 3E-13 85.1 7.8 43 4-48 15-57 (237)
438 COG4619 ABC-type uncharacteriz 98.8 2.3E-08 5.1E-13 76.9 8.2 46 2-49 14-59 (223)
439 COG1162 Predicted GTPases [Gen 98.8 9E-09 1.9E-13 87.0 6.5 61 20-84 165-231 (301)
440 TIGR02204 MsbA_rel ABC transpo 98.8 1.2E-08 2.6E-13 96.3 8.3 149 4-162 353-520 (576)
441 COG1127 Ttg2A ABC-type transpo 98.8 1.6E-08 3.6E-13 82.1 7.7 46 2-49 19-64 (263)
442 TIGR02324 CP_lyasePhnL phospho 98.8 6.7E-09 1.4E-13 86.2 5.8 42 5-48 22-63 (224)
443 PRK13539 cytochrome c biogenes 98.8 3.3E-08 7.1E-13 81.0 9.8 44 3-48 14-57 (207)
444 PRK14241 phosphate transporter 98.8 2.1E-08 4.5E-13 85.1 8.9 41 3-45 16-56 (258)
445 cd03251 ABCC_MsbA MsbA is an e 98.8 1.3E-08 2.8E-13 85.0 7.4 42 5-48 16-57 (234)
446 TIGR01193 bacteriocin_ABC ABC- 98.8 6.9E-09 1.5E-13 100.3 6.5 153 3-163 486-656 (708)
447 PRK14246 phosphate ABC transpo 98.8 1.9E-08 4.1E-13 85.2 8.4 45 2-48 21-65 (257)
448 PRK10522 multidrug transporter 98.8 5.6E-09 1.2E-13 98.0 5.6 140 4-152 336-485 (547)
449 TIGR00954 3a01203 Peroxysomal 98.8 7.9E-09 1.7E-13 98.7 6.7 149 3-163 464-627 (659)
450 KOG0465 Mitochondrial elongati 98.8 7.9E-09 1.7E-13 93.5 6.2 201 18-235 38-262 (721)
451 COG1124 DppF ABC-type dipeptid 98.8 1.1E-08 2.3E-13 83.4 6.4 136 5-148 21-173 (252)
452 PRK13549 xylose transporter AT 98.8 1.2E-08 2.5E-13 94.9 7.6 42 2-45 16-57 (506)
453 PRK13644 cbiO cobalt transport 98.8 6.5E-09 1.4E-13 88.9 5.4 43 4-48 15-57 (274)
454 PRK10982 galactose/methyl gala 98.8 1.1E-08 2.3E-13 94.8 7.3 45 3-49 10-54 (491)
455 PRK13649 cbiO cobalt transport 98.8 4.6E-08 1E-12 84.0 10.7 42 5-48 21-62 (280)
456 PRK14247 phosphate ABC transpo 98.8 1.9E-08 4.1E-13 84.9 8.1 41 3-45 15-55 (250)
457 COG4586 ABC-type uncharacteriz 98.8 1.3E-08 2.7E-13 84.2 6.7 146 7-163 40-201 (325)
458 cd03369 ABCC_NFT1 Domain 2 of 98.8 1.2E-08 2.5E-13 83.7 6.7 43 4-48 21-63 (207)
459 TIGR01069 mutS2 MutS2 family p 98.8 7.9E-07 1.7E-11 86.0 20.1 31 11-42 315-345 (771)
460 COG4152 ABC-type uncharacteriz 98.8 1.3E-09 2.8E-14 88.6 0.9 169 2-181 13-198 (300)
461 KOG0090 Signal recognition par 98.8 5.4E-08 1.2E-12 77.4 10.0 128 20-162 39-171 (238)
462 PRK13647 cbiO cobalt transport 98.8 6E-09 1.3E-13 89.1 5.1 43 4-48 18-60 (274)
463 PRK11614 livF leucine/isoleuci 98.8 4.2E-09 9.1E-14 88.2 4.1 44 3-48 17-60 (237)
464 TIGR01192 chvA glucan exporter 98.8 1.3E-08 2.9E-13 96.1 7.8 148 4-162 348-515 (585)
465 cd01849 YlqF_related_GTPase Yl 98.8 1.5E-08 3.3E-13 79.1 6.9 55 20-79 101-155 (155)
466 PRK13636 cbiO cobalt transport 98.8 3E-08 6.6E-13 85.2 9.4 44 3-48 18-61 (283)
467 PRK11288 araG L-arabinose tran 98.8 9.2E-09 2E-13 95.5 6.6 45 3-49 16-60 (501)
468 cd00267 ABC_ATPase ABC (ATP-bi 98.8 8.4E-09 1.8E-13 80.7 5.4 41 4-46 12-52 (157)
469 cd03250 ABCC_MRP_domain1 Domai 98.8 2E-08 4.4E-13 82.1 7.8 42 5-48 19-60 (204)
470 KOG0071 GTP-binding ADP-ribosy 98.8 2E-07 4.3E-12 69.1 12.0 125 19-162 17-144 (180)
471 PRK13768 GTPase; Provisional 98.8 3.4E-08 7.3E-13 83.4 9.2 81 69-152 97-177 (253)
472 PRK10789 putative multidrug tr 98.8 1.1E-08 2.4E-13 96.4 7.0 151 4-162 328-495 (569)
473 PRK09563 rbgA GTPase YlqF; Rev 98.8 4.1E-08 8.9E-13 84.5 9.9 64 20-88 122-185 (287)
474 TIGR03265 PhnT2 putative 2-ami 98.8 2.7E-08 5.9E-13 87.9 9.0 44 3-48 16-59 (353)
475 PRK13637 cbiO cobalt transport 98.8 3.3E-08 7.1E-13 85.1 9.3 43 4-48 20-62 (287)
476 PRK10070 glycine betaine trans 98.8 2.5E-08 5.4E-13 89.3 8.8 146 5-162 42-208 (400)
477 PRK09700 D-allose transporter 98.8 1.4E-08 3.1E-13 94.5 7.6 44 3-48 17-60 (510)
478 TIGR02769 nickel_nikE nickel i 98.8 1.1E-08 2.4E-13 87.1 6.3 43 4-48 24-66 (265)
479 PRK10851 sulfate/thiosulfate t 98.8 2.7E-08 5.8E-13 87.9 8.9 45 3-49 14-58 (353)
480 PRK13646 cbiO cobalt transport 98.8 3.5E-08 7.6E-13 84.9 9.4 43 4-48 20-62 (286)
481 cd03238 ABC_UvrA The excision 98.8 8.4E-08 1.8E-12 76.3 10.9 36 4-41 8-43 (176)
482 cd03244 ABCC_MRP_domain2 Domai 98.8 1.2E-08 2.6E-13 84.5 6.3 43 4-48 17-59 (221)
483 cd03234 ABCG_White The White s 98.8 5.1E-08 1.1E-12 81.0 10.1 39 4-44 20-58 (226)
484 TIGR03375 type_I_sec_LssB type 98.8 1.1E-08 2.4E-13 98.6 6.9 148 4-162 478-645 (694)
485 cd01855 YqeH YqeH. YqeH is an 98.8 1.3E-08 2.8E-13 82.3 6.2 56 20-79 128-190 (190)
486 PRK13652 cbiO cobalt transport 98.8 1.6E-08 3.5E-13 86.6 7.2 43 4-48 17-59 (277)
487 PRK13634 cbiO cobalt transport 98.8 3.8E-08 8.2E-13 84.9 9.4 43 4-48 20-62 (290)
488 PRK13639 cbiO cobalt transport 98.8 4.1E-08 8.9E-13 84.0 9.5 43 4-48 15-57 (275)
489 PRK14267 phosphate ABC transpo 98.8 2.2E-08 4.7E-13 84.7 7.8 41 3-45 16-56 (253)
490 KOG0468 U5 snRNP-specific prot 98.8 5.3E-08 1.2E-12 89.0 10.5 116 19-150 128-262 (971)
491 COG0050 TufB GTPases - transla 98.8 7E-08 1.5E-12 80.4 10.3 126 20-163 13-152 (394)
492 TIGR00968 3a0106s01 sulfate AB 98.8 1.4E-08 3E-13 85.1 6.3 44 3-48 12-55 (237)
493 TIGR01842 type_I_sec_PrtD type 98.8 2.3E-08 4.9E-13 93.8 8.4 147 4-162 331-498 (544)
494 TIGR00958 3a01208 Conjugate Tr 98.8 2.8E-08 6.1E-13 96.0 9.2 140 4-151 494-652 (711)
495 cd01854 YjeQ_engC YjeQ/EngC. 98.8 3E-08 6.5E-13 85.2 8.4 60 20-83 162-227 (287)
496 COG1119 ModF ABC-type molybden 98.8 7.3E-08 1.6E-12 78.7 10.1 45 2-48 42-86 (257)
497 PRK13641 cbiO cobalt transport 98.8 3.6E-08 7.7E-13 84.9 8.9 42 5-48 21-62 (287)
498 TIGR02982 heterocyst_DevA ABC 98.8 5.2E-08 1.1E-12 80.6 9.6 43 4-48 18-60 (220)
499 PRK00098 GTPase RsgA; Reviewed 98.8 3.5E-08 7.5E-13 85.3 8.8 59 20-82 165-229 (298)
500 PRK10419 nikE nickel transport 98.8 3.9E-08 8.5E-13 83.9 9.1 43 4-48 25-67 (268)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.96 E-value=3.2e-29 Score=205.92 Aligned_cols=140 Identities=46% Similarity=0.798 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|+|++|+||||++|+|+|...|.++.+..++|..+......+ .++.++||||||+.++......+.+++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 4899999999999999999999999988877788898998888877 899999999999999887778888999999998
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhhh
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~ 163 (285)
+.+++|++++|++++ +++..++..++.+...||+..|.+++||+|++|.+.+ ..+++|+..
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~ 140 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKK 140 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHH
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhc
Confidence 999999999999998 9999999999999999999999999999999999988 668888884
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.95 E-value=2.1e-26 Score=187.34 Aligned_cols=154 Identities=51% Similarity=0.812 Sum_probs=133.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|+|++|+|||||+|+|+|...+.++....++|..+..+...+ .+..++||||||+.++......+..++.+++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4899999999999999999999998877766778899888888888 789999999999999876667778889888888
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhhhcCCchhHhhHHhhhhH
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ 179 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~ 179 (285)
+.+++|++++|++++ +++..+...++.++..||+..+.++++|+||+|.+.. ..+++|+.. .+ ..+
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~----------~~l 145 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SC----------EAL 145 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-cc----------HHH
Confidence 889999999999998 4999999999999999999888899999999999987 789999885 22 224
Q ss_pred HHHHHhcCC
Q 023214 180 QFEVDSLKG 188 (285)
Q Consensus 180 ~~~i~~~~g 188 (285)
..+++.+|+
T Consensus 146 ~~l~~~c~~ 154 (196)
T cd01852 146 KRLLEKCGG 154 (196)
T ss_pred HHHHHHhCC
Confidence 556777777
No 3
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.86 E-value=2.1e-20 Score=158.45 Aligned_cols=152 Identities=24% Similarity=0.311 Sum_probs=111.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+++|.+|+|||||+|+|+|...+..... .+.+..+....... .+..++||||||+.+......... .+.+++.
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~-~~ik~~l 114 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAV-NIIKRFL 114 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHH-HHHHHHh
Confidence 47999999999999999999999886433221 12233333344444 688999999999997533233332 2223322
Q ss_pred hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhhhcCCchhHhhHHh
Q 023214 99 MAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATK 175 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (285)
. ..++|+++||.+.+ .+++..+...++.+...||...|.++++++||+|...+++.++++|+. .++..|+..+..
T Consensus 115 ~-~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~-~~~~~lq~~i~~ 190 (313)
T TIGR00991 115 L-GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFS-KRSEALLRVIHS 190 (313)
T ss_pred h-cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHH-hcHHHHHHHHHH
Confidence 2 24799999997653 378999999999999999999999999999999988666689999998 477777754443
No 4
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.83 E-value=3e-19 Score=162.82 Aligned_cols=151 Identities=23% Similarity=0.340 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|+|++|+|||||+|+|+|...+.+.....+ |..+....... .+..+.||||||+.++.... .....+..++..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~-TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq-~~neeILk~Ik~ 195 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMG-TTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQ-SKNEKILSSVKK 195 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCC-ceEEEEEEEEE-CCceEEEEECCCCCccccch-HHHHHHHHHHHH
Confidence 6899999999999999999999987766544334 44443333444 68899999999999875432 233344444422
Q ss_pred c--cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCCh-----hcHHHHhhhcCCchhHh
Q 023214 100 A--KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-----ETLEDYLGRECPKPLKK 171 (285)
Q Consensus 100 ~--~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~-----~~l~~~l~~~~~~~l~~ 171 (285)
+ ..++|++|||+..+ .+.+.++...++.+...||..+|.++|||+||+|.+.+++ .++++|+. .+...++.
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~-~rs~~Lq~ 274 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVA-QRSHIVQQ 274 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHh-hChHHHHH
Confidence 2 23689999999875 2344467899999999999999999999999999997532 58999998 47776774
Q ss_pred hHH
Q 023214 172 GAT 174 (285)
Q Consensus 172 ~~~ 174 (285)
.+.
T Consensus 275 ~Ir 277 (763)
T TIGR00993 275 AIG 277 (763)
T ss_pred HHH
Confidence 444
No 5
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.81 E-value=7.4e-19 Score=147.05 Aligned_cols=131 Identities=28% Similarity=0.351 Sum_probs=99.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC---cHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG---SEFVGKEIVK 95 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~ 95 (285)
..+|+|+|++|+|||||+|+|+|...+..+. ..+.|..+..+...+ .+..++||||||+.+.... ...+...+.+
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 3899999999999999999999988654432 234566666666655 6888999999999976321 1223333433
Q ss_pred HHhhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
++.. .++|+++||..++ .+++..+...++.+...||...|.++++|+||+|...++
T Consensus 109 ~l~~--~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 109 YLKK--KTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHhc--cCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 3322 3578999998764 478888999999999999999999999999999988664
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=144.05 Aligned_cols=124 Identities=23% Similarity=0.339 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
..|++||++++|||||+|.|+|... +-.++...|+......+...++..+.++||||+..+ ....++.+.+.+..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~~ 81 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAARS 81 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHHH
Confidence 3899999999999999999999998 445666666666666666657888999999999965 56678889999999
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
++..+|+++||+|+...+..++...++.++.. . .|+++++||.|...+.
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~---~--~pvil~iNKID~~~~~ 130 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKT---K--TPVILVVNKIDKVKPK 130 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhhc---C--CCeEEEEEccccCCcH
Confidence 99999999999999878999999998888872 1 2999999999988773
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=5.4e-18 Score=148.43 Aligned_cols=149 Identities=25% Similarity=0.254 Sum_probs=120.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
+.|+|||++++|||||+|.|+|+..... ....|+|....|....| .+..+.+|||+|+.+. +.+.+...+......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~--~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDG--DEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCcC--CchHHHHHHHHHHHH
Confidence 6899999999999999999999986433 34568999999999999 7888999999999853 345577888888888
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhhhcCCchhHhhHHhhhh
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRD 178 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (285)
++..+|+++||+|+...+++.|.....+++.. + . |+++|+||+|.... .....+|..-.-+.++.-...+..+
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-~-k---pviLvvNK~D~~~~-e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRS-K-K---PVILVVNKIDNLKA-EELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-C-C---CEEEEEEcccCchh-hhhHHHHHhcCCCCceEeehhhccC
Confidence 88999999999999889999999999988842 2 2 99999999998733 2667777776667666644444433
No 8
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.77 E-value=1.8e-16 Score=135.14 Aligned_cols=133 Identities=25% Similarity=0.341 Sum_probs=92.8
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc----cCC--CCcceeEEEEEEEeeC-C--ceEEEEeCCCCCCCC
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASS--SGVTSTCEMQRTVLKD-G--QVVNVIDTPGLFDFS 83 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~----~~~--~~~t~~~~~~~~~~~~-~--~~~~liDtpG~~~~~ 83 (285)
....|-..+|+++|++|+|||||+|+|++....... ... ...+............ + .+++++|||||+|+-
T Consensus 17 ~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~i 96 (373)
T COG5019 17 LSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFI 96 (373)
T ss_pred HHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccc
Confidence 345566799999999999999999999998542221 111 2244444444444422 2 459999999999874
Q ss_pred CCcHHHHHHHHHHHhhc------------------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEE
Q 023214 84 AGSEFVGKEIVKCIGMA------------------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (285)
Q Consensus 84 ~~~~~~~~~~~~~~~~~------------------~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~ 144 (285)
. ....+..+..++... -..+|++||.+.+ ++.+++-+...+..+...+ |+|.|+
T Consensus 97 d-Ns~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI 169 (373)
T COG5019 97 D-NSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVI 169 (373)
T ss_pred c-ccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------Ceeeee
Confidence 3 344444444443211 1248999999987 6789999988888776643 999999
Q ss_pred eCCCCCCC
Q 023214 145 TGGDELED 152 (285)
Q Consensus 145 nk~D~~~~ 152 (285)
.|.|.++.
T Consensus 170 ~KaD~lT~ 177 (373)
T COG5019 170 AKADTLTD 177 (373)
T ss_pred eccccCCH
Confidence 99999987
No 9
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.75 E-value=4.6e-17 Score=121.07 Aligned_cols=116 Identities=22% Similarity=0.326 Sum_probs=80.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+|+|.+|+|||||+|+|++......+.. .+.|....+....+ .+..+.++||||+.+....... ...+..++...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~-~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDND-GKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHH-HHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHH-HHHHHHHHHHH
Confidence 689999999999999999999654333322 45666665555666 7888899999999875322221 12333344443
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk 146 (285)
..+|+++||+++..+.+..+...+..+. .+ .|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~----~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK--NK----KPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH--TT----SEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh--cC----CCEEEEEcC
Confidence 7789999999986544555566666663 12 299999997
No 10
>PRK15494 era GTPase Era; Provisional
Probab=99.71 E-value=5.7e-16 Score=135.88 Aligned_cols=147 Identities=20% Similarity=0.267 Sum_probs=97.0
Q ss_pred cccCccccCCCCC-----ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 023214 6 IDDDWELTSPSNG-----ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (285)
Q Consensus 6 ~~~~~~~~~~~~~-----~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (285)
.....++.+..|. ..+|+++|++|+|||||+|.|+|...... ....++|.........+ .+..+.++||||+.
T Consensus 34 ~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~iv-s~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~ 111 (339)
T PRK15494 34 STSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV-TPKVQTTRSIITGIITL-KDTQVILYDTPGIF 111 (339)
T ss_pred cccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCceeec-cCCCCCccCcEEEEEEe-CCeEEEEEECCCcC
Confidence 3444556666551 13999999999999999999999875221 11223444433344445 67789999999997
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHH
Q 023214 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDY 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~ 160 (285)
.... .+...+.+....++.++|++++|+|....++..+..++..+... +. |.++|+||+|........+.++
T Consensus 112 ~~~~---~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~~----p~IlViNKiDl~~~~~~~~~~~ 183 (339)
T PRK15494 112 EPKG---SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-NI----VPIFLLNKIDIESKYLNDIKAF 183 (339)
T ss_pred CCcc---cHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-CC----CEEEEEEhhcCccccHHHHHHH
Confidence 5432 23444555555557889999999998767777776666666543 22 6678999999764322334444
Q ss_pred hh
Q 023214 161 LG 162 (285)
Q Consensus 161 l~ 162 (285)
+.
T Consensus 184 l~ 185 (339)
T PRK15494 184 LT 185 (339)
T ss_pred HH
Confidence 43
No 11
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.70 E-value=1.5e-16 Score=122.86 Aligned_cols=119 Identities=24% Similarity=0.320 Sum_probs=82.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+++|.+++|||||+|+|+|..... ...+|+|+........+ .+..+.++|+||.++...... .+.+...+..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v--~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~--ee~v~~~~l~- 75 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKV--GNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSE--EERVARDYLL- 75 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEE--EESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSH--HHHHHHHHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcee--cCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCc--HHHHHHHHHh-
Confidence 79999999999999999999999543 33568888888888888 789999999999887644332 1233222222
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+|++++|+|++ .+.. +...+..+.+. +. |+++++|++|....
T Consensus 76 ~~~~D~ii~VvDa~-~l~r-~l~l~~ql~e~-g~----P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 76 SEKPDLIIVVVDAT-NLER-NLYLTLQLLEL-GI----PVVVVLNKMDEAER 120 (156)
T ss_dssp HTSSSEEEEEEEGG-GHHH-HHHHHHHHHHT-TS----SEEEEEETHHHHHH
T ss_pred hcCCCEEEEECCCC-CHHH-HHHHHHHHHHc-CC----CEEEEEeCHHHHHH
Confidence 46789999999997 4322 23333334433 32 99999999997754
No 12
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.70 E-value=5.3e-16 Score=132.32 Aligned_cols=121 Identities=21% Similarity=0.238 Sum_probs=81.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+++|++|+|||||+|+|+|....... ...++|... ........+..+.++||||+.+.. ......+.+.+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs-~~~~TTr~~-i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITS-PKAQTTRNR-ISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecC-CCCCcccCc-EEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 7999999999999999999998753221 122334332 223333356679999999997642 22344455555566
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+..+|++++|+|++...+.. ...+..+... + .|+++|+||+|....
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~-~----~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQNL-K----RPVVLTRNKLDNKFK 122 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHHHHHHHhc-C----CCEEEEEECeeCCCH
Confidence 78899999999997555443 4444444432 2 289999999998744
No 13
>PRK00089 era GTPase Era; Reviewed
Probab=99.69 E-value=6.4e-16 Score=133.46 Aligned_cols=122 Identities=23% Similarity=0.322 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
..|+|+|++|+|||||+|+|+|...... ++...|............+..++++||||+.++. ......+......
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~v--s~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~ 80 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIV--SPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWS 80 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeec--CCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHH
Confidence 4899999999999999999999875322 2222233322333323245789999999998643 3344555555556
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
++..+|++++|+|+.+.++..+...+..+... . .|+++|+||+|...
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~---~--~pvilVlNKiDl~~ 127 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKV---K--TPVILVLNKIDLVK 127 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc---C--CCEEEEEECCcCCC
Confidence 67889999999999866777776666666531 1 28999999999873
No 14
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.69 E-value=3e-15 Score=119.92 Aligned_cols=125 Identities=19% Similarity=0.306 Sum_probs=82.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH---HHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF---VGKEIV 94 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~---~~~~~~ 94 (285)
...+|+++|++|+|||||+|.|++......-....+.|..+.++.. +..+.++||||+......... +...+.
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV----NDGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe----CCcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 3489999999999999999999987521111122345555544332 246899999998754332211 111222
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++ .....+|++++|+|+..+++..+...+..+... + .|+++++||+|....
T Consensus 93 ~~l-~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-~----~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 93 EYL-EKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-G----IPVLIVLTKADKLKK 144 (179)
T ss_pred HHH-HhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCH
Confidence 222 223456899999999878988888777666542 2 289999999998754
No 15
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2.4e-15 Score=118.79 Aligned_cols=125 Identities=20% Similarity=0.255 Sum_probs=96.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc---HHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EFVGKEIV 94 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~ 94 (285)
..+-|+++|++++|||||+|+|+|+.....-+..+|.|....++.+.. .+.+||.||++-..... +.+...+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~----~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD----ELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC----cEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 348999999999999999999999775434344567888877776533 38899999998655443 23445555
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++... ....++++++|+.+.....|+..++++... +- |+++++||+|.+..
T Consensus 99 ~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~-~i----~~~vv~tK~DKi~~ 150 (200)
T COG0218 99 EYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLEL-GI----PVIVVLTKADKLKK 150 (200)
T ss_pred HHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CeEEEEEccccCCh
Confidence 555433 236788999999989999999999988875 32 89999999999976
No 16
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.68 E-value=2.5e-16 Score=144.10 Aligned_cols=183 Identities=19% Similarity=0.082 Sum_probs=115.7
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
|+.++|+++++.+..| .||+|||+||+|||||++.|+|...+..|......+....+..+....+...++.|..-...
T Consensus 14 g~~~l~~~~~l~~~~G--~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~ 91 (530)
T COG0488 14 GDRPLLENVSLTLNPG--ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGF 91 (530)
T ss_pred CCceeecCCcceeCCC--CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhh
Confidence 6789999999999999 89999999999999999999999988776655444445555555442222223333111100
Q ss_pred CCCCcHHHHHHHHHHHh------------------------------hccC--CccEEEEEEeCCCCCCHHHHHHHHHHH
Q 023214 82 FSAGSEFVGKEIVKCIG------------------------------MAKD--GIHAVLVVFSVRSRFSQEEEAALHSLQ 129 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~------------------------------~~~~--~~~~~l~v~~~~~~~~~~~~~~l~~~~ 129 (285)
.....+..++..... ..+. +.... --+ -..+|++.+.++.+.+
T Consensus 92 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~-~~~LSGG~r~Rv~LA~ 166 (530)
T COG0488 92 --GELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRP-VSSLSGGWRRRVALAR 166 (530)
T ss_pred --HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCc-hhhcCHHHHHHHHHHH
Confidence 000011111111100 0000 01111 111 2479999999999999
Q ss_pred HHhCccccCeEEEE---EeCCCCCCCChhcHHHHhhhcCCchhH---------hhHHhhhhHHH-HHHhcCC-CCHHHHH
Q 023214 130 TLFGKKIFDYMIVV---FTGGDELEDNDETLEDYLGRECPKPLK---------KGATKLRDQQF-EVDSLKG-YSKREIS 195 (285)
Q Consensus 130 ~~~~~~~~~~~iil---~nk~D~~~~~~~~l~~~l~~~~~~~l~---------~~~~~~~~~~~-~i~~~~g-y~~~~~~ 195 (285)
.+|.++ .++++ +||+|...- ..+++||..++++.+. ..+..+-.++. .+..|+| |+.+..+
T Consensus 167 aL~~~p---DlLLLDEPTNHLD~~~i--~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 167 ALLEEP---DLLLLDEPTNHLDLESI--EWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred HHhcCC---CEEEEcCCCcccCHHHH--HHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHH
Confidence 999876 67777 999998887 9999999889995555 22233333333 4666666 8887654
Q ss_pred H
Q 023214 196 E 196 (285)
Q Consensus 196 ~ 196 (285)
+
T Consensus 242 r 242 (530)
T COG0488 242 K 242 (530)
T ss_pred H
Confidence 3
No 17
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.67 E-value=2.8e-15 Score=127.77 Aligned_cols=128 Identities=23% Similarity=0.288 Sum_probs=84.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCCcHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSEF 88 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~~~~ 88 (285)
-..+|+++|++|+|||||+|+|++...+..... ....|........... .+ ..++|+||||+++... ...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-~~~ 81 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-NSD 81 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-chh
Confidence 347999999999999999999999876544221 1233333333322221 33 4699999999998643 233
Q ss_pred HHHHHHHHHhh----------------c--cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCC
Q 023214 89 VGKEIVKCIGM----------------A--KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (285)
Q Consensus 89 ~~~~~~~~~~~----------------~--~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~ 149 (285)
.+..+..++.. . -..+|+++|++++. .+++..+...++.+.. .+ |+++|+||+|.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~v--~vi~VinK~D~ 155 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----RV--NIIPVIAKADT 155 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----cC--CEEEEEECCCc
Confidence 33333322111 1 11479999999985 4677878777777654 22 89999999999
Q ss_pred CCC
Q 023214 150 LED 152 (285)
Q Consensus 150 ~~~ 152 (285)
+..
T Consensus 156 l~~ 158 (276)
T cd01850 156 LTP 158 (276)
T ss_pred CCH
Confidence 865
No 18
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.66 E-value=4.9e-15 Score=116.39 Aligned_cols=122 Identities=23% Similarity=0.269 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||+|.|+|......... ...+...... .....+..+.++||||+.++.... ...+......
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~~ 78 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRG-IYTDDDAQIIFVDTPGIHKPKKKL---GERMVKAAWS 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEE-EEEcCCeEEEEEECCCCCcchHHH---HHHHHHHHHH
Confidence 6999999999999999999999865322211 1222222222 222245779999999998653221 2223334445
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.++.+|++++|+++.+..+......+..+... + .|+++++||+|...
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~ 125 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKS-K----TPVILVLNKIDLVK 125 (168)
T ss_pred HHHhCCEEEEEEECCCccCchHHHHHHHHHHh-C----CCEEEEEEchhccc
Confidence 56788999999999766566565555555443 2 28999999999873
No 19
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.66 E-value=3.2e-16 Score=133.02 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccc----------------ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (285)
+|+++|+.|+|||||+++|+....... .....+.|.........| .+..++++||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFT- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHH-
Confidence 589999999999999999973221100 012346777777888888 78899999999986531
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhc----HHHH
Q 023214 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET----LEDY 160 (285)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~----l~~~ 160 (285)
.+ ...++..+|++++|+|+...+...+...+..+... +. |+++++||+|....+... +.+.
T Consensus 79 ------~~----~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~~----p~ivviNK~D~~~a~~~~~~~~l~~~ 143 (270)
T cd01886 79 ------IE----VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-NV----PRIAFVNKMDRTGADFFRVVEQIREK 143 (270)
T ss_pred ------HH----HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 22 22345667999999999777888887777776553 32 889999999987543222 2222
Q ss_pred hhhcCCchhH---hhHHhhhhHHHHHHhcCC--CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023214 161 LGRECPKPLK---KGATKLRDQQFEVDSLKG--YSKREIS-ELKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAEE 234 (285)
Q Consensus 161 l~~~~~~~l~---~~~~~~~~~~~~i~~~~g--y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 234 (285)
+.. ...+.. .....+.++.+++.. .. |....-. .....++..+.+...+.+.++.+.+.+..++|.++|.+.
T Consensus 144 l~~-~~~~~~~Pisa~~~f~g~vd~~~~-~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~ 221 (270)
T cd01886 144 LGA-NPVPLQLPIGEEDDFRGVVDLIEM-KALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEG 221 (270)
T ss_pred hCC-CceEEEeccccCCCceEEEEcccc-EEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCC
Confidence 221 111111 111112222222211 11 2110000 011234555666667777777777888888888888765
Q ss_pred H
Q 023214 235 Q 235 (285)
Q Consensus 235 ~ 235 (285)
+
T Consensus 222 ~ 222 (270)
T cd01886 222 E 222 (270)
T ss_pred C
Confidence 5
No 20
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.66 E-value=1.7e-15 Score=118.27 Aligned_cols=120 Identities=25% Similarity=0.298 Sum_probs=84.7
Q ss_pred EEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccC
Q 023214 23 VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD 102 (285)
Q Consensus 23 ~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (285)
+++|.+|+|||||+|.|++....... ...+.|.........+ .+..+.++||||+.+... .....+.......+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 58999999999999999987532221 2234455555555555 677899999999986432 334444444444567
Q ss_pred CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 103 GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 103 ~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+|++++|+|+.++.+..+...+..+... + .|+++++||+|....
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~ 120 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE 120 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh
Confidence 78999999999767776666665665543 2 399999999998765
No 21
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.66 E-value=5.4e-15 Score=117.12 Aligned_cols=127 Identities=21% Similarity=0.223 Sum_probs=82.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+++|++|+|||||+|+|++........ ..+.+.......... .+..+.+|||||+.+.................
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 3799999999999999999999876432222 223333333334444 56779999999998653222211111111122
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+..+|++++|+|+.++.+......+..+... + .|+++++||+|....
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE-G----KALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc-C----CCEEEEEeccccCCc
Confidence 345678999999999877776665555444332 2 289999999998754
No 22
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.65 E-value=5.2e-15 Score=115.35 Aligned_cols=121 Identities=26% Similarity=0.285 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||+|+|++....... ...+.+.........+ .+..++++||||+.+...... .........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIE---KIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHH---HHHHHHHHH
Confidence 68999999999999999999987642221 1234454444445555 577899999999986532211 111112223
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+|+..+.+..+...+.. ..+ .|+++++||+|....
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~----~~vi~v~nK~D~~~~ 122 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL---PAD----KPIIVVLNKSDLLPD 122 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh---hcC----CCEEEEEEchhcCCc
Confidence 4567899999999986777766555443 222 289999999998765
No 23
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=8.8e-15 Score=125.81 Aligned_cols=147 Identities=21% Similarity=0.246 Sum_probs=96.7
Q ss_pred CCcccCc-cccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc-----ccCCCCcceeEEEEEEEeeC-C--ceEEEE
Q 023214 4 SAIDDDW-ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSGVTSTCEMQRTVLKD-G--QVVNVI 74 (285)
Q Consensus 4 ~~~~~~~-~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~~~-~--~~~~li 74 (285)
..++..+ ...+..|-.++++++|++|.|||||+|+|++...... .......|............ | -+++|+
T Consensus 5 ~~lP~q~~r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~Ltvi 84 (366)
T KOG2655|consen 5 ANLPNQVHRKSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVI 84 (366)
T ss_pred ccChHHHHHHHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEe
Confidence 3444444 2445667779999999999999999999998854221 11111224444444444422 2 459999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhh---------------ccC--CccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccc
Q 023214 75 DTPGLFDFSAGSEFVGKEIVKCIGM---------------AKD--GIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKI 136 (285)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~---------------~~~--~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~ 136 (285)
||||++|.... ...+..+..++.. .+. .+|++||.+.+ ++++++-|...++.+...+
T Consensus 85 dtPGfGD~vdn-s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v---- 159 (366)
T KOG2655|consen 85 DTPGFGDAVDN-SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV---- 159 (366)
T ss_pred ccCCCcccccc-cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc----
Confidence 99999986433 3223333332211 112 58999999998 6669999988887776543
Q ss_pred cCeEEEEEeCCCCCCCChhcHHH
Q 023214 137 FDYMIVVFTGGDELEDNDETLED 159 (285)
Q Consensus 137 ~~~~iil~nk~D~~~~~~~~l~~ 159 (285)
|+|.|+.|+|.++. ..+..
T Consensus 160 --NiIPVI~KaD~lT~--~El~~ 178 (366)
T KOG2655|consen 160 --NLIPVIAKADTLTK--DELNQ 178 (366)
T ss_pred --cccceeeccccCCH--HHHHH
Confidence 99999999999987 44444
No 24
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.65 E-value=6.2e-15 Score=116.64 Aligned_cols=124 Identities=23% Similarity=0.209 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH-HHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-VGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~-~~~~~~~~~~ 98 (285)
++|+++|++|+|||||+|.|++....... ..+.|..+......+ .+..++++||||+.+....... +... .+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~---~~~ 74 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAP--YPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQ---AIT 74 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCC--CCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHH---HHH
Confidence 48999999999999999999987642221 123344444444444 5678999999998653222111 1111 111
Q ss_pred hccCCccEEEEEEeCCCCCC---HHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFS---QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
......|++++|+|+.++.+ .....++..+...+.. .|+++++||+|....
T Consensus 75 ~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~---~pvilv~NK~Dl~~~ 128 (168)
T cd01897 75 ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKN---KPVIVVLNKIDLLTF 128 (168)
T ss_pred HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCc---CCeEEEEEccccCch
Confidence 11123589999999965433 2234556666554422 399999999998754
No 25
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.64 E-value=3.5e-15 Score=127.05 Aligned_cols=136 Identities=23% Similarity=0.288 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeEEEEEEEee-C--CceEEEEeCCCCCCCCCCcHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGSEFV 89 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~-~--~~~~~liDtpG~~~~~~~~~~~ 89 (285)
..+|+|+|.+|+|||||+|+|++......... ....+........... . ..+++|+||||+++.. +....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i-~n~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI-DNSDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-THCHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-cchhh
Confidence 37999999999999999999999876544310 1112222222222221 2 2459999999999753 33333
Q ss_pred HHHHHHHHhhc-----------------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 90 GKEIVKCIGMA-----------------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 90 ~~~~~~~~~~~-----------------~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
+..+..++... -..+|++||++++ ++++++.+...++.+... + |+|.|+.|+|.++
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~----v--NvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR----V--NVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT----S--EEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc----c--cEEeEEecccccC
Confidence 33343333211 1247999999998 467999888777766443 3 9999999999998
Q ss_pred CChhcHHHHhhh
Q 023214 152 DNDETLEDYLGR 163 (285)
Q Consensus 152 ~~~~~l~~~l~~ 163 (285)
. +.+..+-..
T Consensus 157 ~--~el~~~k~~ 166 (281)
T PF00735_consen 157 P--EELQAFKQR 166 (281)
T ss_dssp H--HHHHHHHHH
T ss_pred H--HHHHHHHHH
Confidence 7 677666554
No 26
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.64 E-value=6.1e-15 Score=134.09 Aligned_cols=122 Identities=25% Similarity=0.313 Sum_probs=94.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+++|++|+|||||+|.|++...... ....++|..+.+....+ .+..+.++||||+... ...+...+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 489999999999999999998764221 22356777777777777 7888999999998642 233445566666666
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+..+|++++|+|+..+++..+.....+++.. + .|+++++||+|....
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-~----~piilVvNK~D~~~~ 122 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-G----KPVILVANKIDGKKE 122 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-C----CCEEEEEECccCCcc
Confidence 7889999999999878999888888877763 3 289999999998754
No 27
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.64 E-value=5.7e-15 Score=117.04 Aligned_cols=125 Identities=20% Similarity=0.178 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc-eEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ-VVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
+|+++|++|+|||||+|+|.+.....+. ..+.|....+....+ .+. .+.++||||+.+.......+...+. .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~--~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~----~ 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD--YPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFL----R 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC--CCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHH----H
Confidence 6899999999999999999986542111 122344444445555 444 8999999998643221111222222 2
Q ss_pred ccCCccEEEEEEeCCCC-CCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSR-FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~-~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+|+.++ -+... ..+...+..........|+++|+||+|....
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 23457999999999744 23222 2344444443211122489999999998655
No 28
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.64 E-value=1.1e-14 Score=119.08 Aligned_cols=126 Identities=25% Similarity=0.207 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|+|++|+|||||+|.|++...+..+. ...|.........+.....+.++||||+.+.. .......+...+ .
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~~~~~~~~~~~-~ 116 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQ--LFATLDPTTRRLRLPDGREVLLTDTVGFIRDL--PHQLVEAFRSTL-E 116 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCc--cceeccceeEEEEecCCceEEEeCCCccccCC--CHHHHHHHHHHH-H
Confidence 799999999999999999999876432221 22333444444555233489999999986432 122222232222 2
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+|+.++.+.... .+...+....... .|+++|+||+|....
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~ 168 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD 168 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh
Confidence 35578999999999766555443 3334444332222 389999999998765
No 29
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=1.1e-14 Score=132.57 Aligned_cols=132 Identities=22% Similarity=0.262 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
++|+|+|.+|+|||||+|.|+|....... ...++|....+....+ .+..+.++||||+.+. .......+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAEW-LGREFILIDTGGIEPD---DDGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEEE-CCcEEEEEECCCCCCc---chhHHHHHHHHHHH
Confidence 58999999999999999999987742222 2345676666777777 6789999999999862 22244455555555
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~ 162 (285)
++..+|++++|+|+.++++..+.....+++.. + .|+++++||+|.... ...+.++..
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~----~piilv~NK~D~~~~-~~~~~~~~~ 133 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-N----KPVILVVNKVDGPDE-EADAYEFYS 133 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCccc-hhhHHHHHh
Confidence 67789999999999878888887777777654 3 289999999996542 144445543
No 30
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=7.8e-14 Score=114.27 Aligned_cols=136 Identities=18% Similarity=0.207 Sum_probs=86.2
Q ss_pred ccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC---CceEEEEeCCCCCCCCCCc
Q 023214 10 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD---GQVVNVIDTPGLFDFSAGS 86 (285)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~ 86 (285)
++-.+..|-..+|+-||.+|.|||||+++|.+...-....+..-+++........... .-.++|+||.||+|.-..+
T Consensus 33 V~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~ 112 (406)
T KOG3859|consen 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKE 112 (406)
T ss_pred HHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcc
Confidence 5667788888999999999999999999999876422222222233333333322211 2458999999999864332
Q ss_pred HHHHHHHHHHH------------------h-hccCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEEeC
Q 023214 87 EFVGKEIVKCI------------------G-MAKDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (285)
Q Consensus 87 ~~~~~~~~~~~------------------~-~~~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk 146 (285)
+ ..+.+..++ . ..-..+|+++|.+.+ ++++...+.-.+..+.. .+ |+|.++.|
T Consensus 113 ~-Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds----kV--NIIPvIAK 185 (406)
T KOG3859|consen 113 D-SYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS----KV--NIIPVIAK 185 (406)
T ss_pred c-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh----hh--hhHHHHHH
Confidence 1 111111111 1 112358999999988 55666666555554433 33 89999999
Q ss_pred CCCCCC
Q 023214 147 GDELED 152 (285)
Q Consensus 147 ~D~~~~ 152 (285)
.|..+.
T Consensus 186 aDtisK 191 (406)
T KOG3859|consen 186 ADTISK 191 (406)
T ss_pred hhhhhH
Confidence 998876
No 31
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=1.3e-14 Score=133.07 Aligned_cols=124 Identities=26% Similarity=0.255 Sum_probs=93.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..++|+|||.+|+|||||+|.|++...... ....++|....+....+ .+..+.|+||||+... ...+...+....
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v-~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~~ 111 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVV-EDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQA 111 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccc-cCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHHH
Confidence 347999999999999999999998764322 23456777777777777 7788999999998632 222444555555
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|+.++.+..+..++..+... + .|+++|+||+|...
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-~----~piilV~NK~Dl~~ 160 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATDEAVARVLRRS-G----KPVILAANKVDDER 160 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccCCc
Confidence 5667788999999999878888777777666542 2 29999999999764
No 32
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.61 E-value=9.9e-15 Score=118.72 Aligned_cols=118 Identities=21% Similarity=0.209 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC---cceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+++|++|+|||||+|+|+|...+..+....+ +|.....+ .......++++||||+.+....... +...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~l~l~DtpG~~~~~~~~~~----~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPY--PHPKFPNVTLWDLPGIGSTAFPPDD----YLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceee--ecCCCCCceEEeCCCCCcccCCHHH----HHHH
Confidence 6899999999999999999999765443333322 12222221 1112457899999999865433222 2222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+...|++++|.+ .+++..+..++..+... +. |+++|+||+|....
T Consensus 76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~ilV~nK~D~~~~ 122 (197)
T cd04104 76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KFYFVRTKVDRDLS 122 (197)
T ss_pred --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CEEEEEecccchhh
Confidence 23567788888754 47899999999988875 43 89999999998654
No 33
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.61 E-value=2.3e-14 Score=117.58 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=80.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------cCCCCcceeEEEEEEEeeCCceE
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLKDGQVV 71 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (285)
||+++|+.|+|||||++.|++....... ....+.|.........+ .+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 6899999999999999999865432110 00146677776776767 78899
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.|+||||+.++ ... +..++..+|++++|+|+..+....+...+.++.. ++.+ ++++++||+|...
T Consensus 80 ~liDTpG~~~~-------~~~----~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~~---~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQY-------TRN----MVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGIR---HVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHHH-------HHH----HHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCCC---cEEEEEEchhccc
Confidence 99999997432 111 2233567899999999976776666555555443 2422 6788999999864
Q ss_pred C
Q 023214 152 D 152 (285)
Q Consensus 152 ~ 152 (285)
.
T Consensus 145 ~ 145 (208)
T cd04166 145 Y 145 (208)
T ss_pred C
Confidence 3
No 34
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.8e-14 Score=121.14 Aligned_cols=124 Identities=24% Similarity=0.242 Sum_probs=91.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.++|++.|.+++|||||+++|++..+- -.+.+.+|.....++... ++..+.+|||||+.|..... .+.+....-
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpE--vA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~E---rN~IE~qAi 241 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPE--VAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEE---RNEIERQAI 241 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCc--cCCCCccccceeEeeeec-CCceEEEecCCcccCCChHH---hcHHHHHHH
Confidence 379999999999999999999998862 233345677777788877 77899999999999853221 233333222
Q ss_pred hccC-CccEEEEEEeCC--CCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKD-GIHAVLVVFSVR--SRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~-~~~~~l~v~~~~--~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++. -.++++|++|++ +.++-++ ...+..++..|. . |+++|+||+|....
T Consensus 242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~---p~v~V~nK~D~~~~ 295 (346)
T COG1084 242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-A---PIVVVINKIDIADE 295 (346)
T ss_pred HHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-C---CeEEEEecccccch
Confidence 2222 247899999984 5577655 567888888887 3 89999999998755
No 35
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.61 E-value=2.6e-14 Score=130.15 Aligned_cols=127 Identities=22% Similarity=0.229 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+++|++|+|||||+|+|+|......+. ..+.|.........+ .+..+.++||||+.........+.........
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 3899999999999999999999887533322 235555554455555 67889999999987654333222211112222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|+..+++..+...+..+... +. |+++++||+|....
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~~----~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLRIAGLALEA-GR----ALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-CC----cEEEEEECccCCCH
Confidence 345678999999999888998888777766553 32 89999999998743
No 36
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.61 E-value=4.7e-16 Score=142.34 Aligned_cols=152 Identities=18% Similarity=0.085 Sum_probs=113.4
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCC
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDF 82 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~ 82 (285)
..++.++++.+.+| .||+|+|+||+|||||++.|+|...+.+|....+.++...|+.+.+.. ....+++|...-..+
T Consensus 335 ~~l~~~~s~~i~~g--~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~ 412 (530)
T COG0488 335 RLLLKDLSFRIDRG--DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFP 412 (530)
T ss_pred ceeecCceEEecCC--CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCc
Confidence 47899999999999 899999999999999999999999888887777888999999887722 122233332211111
Q ss_pred CCCcHHHHHHHHHHHhh-ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhcHH
Q 023214 83 SAGSEFVGKEIVKCIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDETLE 158 (285)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~l~ 158 (285)
... ...++.++.. -+++.++.--| ..+|++++.++.+.+.++.++ |++|+ +||+|..+. +.++
T Consensus 413 ~~~----e~~~r~~L~~f~F~~~~~~~~v----~~LSGGEk~Rl~La~ll~~~p---NvLiLDEPTNhLDi~s~--~aLe 479 (530)
T COG0488 413 DGD----EQEVRAYLGRFGFTGEDQEKPV----GVLSGGEKARLLLAKLLLQPP---NLLLLDEPTNHLDIESL--EALE 479 (530)
T ss_pred ccc----HHHHHHHHHHcCCChHHHhCch----hhcCHhHHHHHHHHHHhccCC---CEEEEcCCCccCCHHHH--HHHH
Confidence 111 2333333332 24444443333 579999999999999988766 89999 999999988 9999
Q ss_pred HHhhhcCCchhH
Q 023214 159 DYLGRECPKPLK 170 (285)
Q Consensus 159 ~~l~~~~~~~l~ 170 (285)
+++..|.|+.+.
T Consensus 480 ~aL~~f~Gtvl~ 491 (530)
T COG0488 480 EALLDFEGTVLL 491 (530)
T ss_pred HHHHhCCCeEEE
Confidence 999999999888
No 37
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.61 E-value=2.1e-15 Score=143.04 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=93.6
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFD 81 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~ 81 (285)
+.++++++|+.+.+| .+++|+|+||+|||||+++|+|...+.+|....+....+.|..+... -....++.|...+..
T Consensus 331 ~~~il~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~ 408 (635)
T PRK11147 331 GKQLVKDFSAQVQRG--DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGK 408 (635)
T ss_pred CeEEEcCcEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhc
Confidence 456899999999999 89999999999999999999998876665443333333333332210 011112222111100
Q ss_pred CCCCcHHHHHHHHHHHhhc-cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhcH
Q 023214 82 FSAGSEFVGKEIVKCIGMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDETL 157 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~l 157 (285)
...........+...+... +...+.-- .+ ..+|++++.++.+++.++..+ +++|+ +|++|.... ..+
T Consensus 409 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~-~~LSgGekqRl~la~al~~~p---~lLlLDEPt~~LD~~~~--~~l 479 (635)
T PRK11147 409 QEVMVNGRPRHVLGYLQDFLFHPKRAMT---PV-KALSGGERNRLLLARLFLKPS---NLLILDEPTNDLDVETL--ELL 479 (635)
T ss_pred ccccccchHHHHHHHHHhcCCCHHHHhC---hh-hhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHH
Confidence 0000000011222222111 11101101 11 479999999999999887665 78888 999998877 888
Q ss_pred HHHhhhcCCchhH
Q 023214 158 EDYLGRECPKPLK 170 (285)
Q Consensus 158 ~~~l~~~~~~~l~ 170 (285)
.+++..+.++.+.
T Consensus 480 ~~~l~~~~~tvi~ 492 (635)
T PRK11147 480 EELLDSYQGTVLL 492 (635)
T ss_pred HHHHHhCCCeEEE
Confidence 8998876665444
No 38
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.61 E-value=7.6e-15 Score=128.80 Aligned_cols=136 Identities=24% Similarity=0.279 Sum_probs=99.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|++||.+++|||||+|.|+|+.....+ ...|+|...-....++ +++.+.++||.|+-....-.+.+...-.....
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 489999999999999999999999864432 2356777777777777 89999999999997433222211000001111
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHh
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL 161 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l 161 (285)
.+...+|++++|+|+..+++..+...+.++.+. |. +++|++||||....+...++++-
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~k 313 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEFK 313 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHHH
Confidence 334567999999999989999999999988876 43 89999999998875434444443
No 39
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.60 E-value=4.4e-14 Score=111.07 Aligned_cols=116 Identities=23% Similarity=0.350 Sum_probs=77.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcc--cccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRA--FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.|+++|++|+|||||+|.|+|... ++. ....++|....+....+..+..+.+|||||...+ ...+.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~-----------~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPE-EKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF-----------IKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchh-hhccCceEEeeeEEEEecCCcEEEEEECCChHHH-----------HHHHH
Confidence 689999999999999999997532 111 1123455555555555522678999999996421 11222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+.++|++++|+|+.+.+.......+..+... +. .|+++++||+|....
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~---~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GI---KRGLVVLTKADLVDE 119 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CC---CcEEEEEECccccCH
Confidence 346688999999999755545555544444332 32 289999999998653
No 40
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.60 E-value=9.6e-14 Score=112.69 Aligned_cols=125 Identities=17% Similarity=0.301 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH---H
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI---V 94 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~---~ 94 (285)
..++|+++|++|+|||||+|+|++...........+.|..+..+. .+..+.|+||||+........ ....+ .
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~-~~~~~~~~~ 97 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKE-EKEKWQKLI 97 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCch-HHHHHHHHH
Confidence 347999999999999999999998652111122234454443332 246799999999875332221 12222 2
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+.......+++++|+|.+.+.+..+...+..+.. .+ .|++++.||+|....
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~----~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YG----IPVLIVLTKADKLKK 150 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cC----CcEEEEEECcccCCH
Confidence 222222345678888899876777766555555533 22 288999999998765
No 41
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.59 E-value=4.1e-14 Score=114.59 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=84.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (285)
.+|+++|+.++|||||+++|++...... .....+.|.........+ .+..++++||||+.+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD---- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH----
Confidence 6899999999999999999986421000 001346676666665655 678899999999742
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+..........+|++++|+|+.......+...+..+... +.+ ++++++||+|....
T Consensus 78 -------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~~---~iIvviNK~D~~~~ 133 (195)
T cd01884 78 -------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GVP---YIVVFLNKADMVDD 133 (195)
T ss_pred -------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---cEEEEEeCCCCCCc
Confidence 222233445678999999999877888888888877654 432 47889999998643
No 42
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.59 E-value=4.4e-14 Score=128.50 Aligned_cols=124 Identities=21% Similarity=0.208 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|.+|+|||||+|+|+|....... ...+.|.........+ .+..+.++||||+.........+..........
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 69999999999999999999987643222 2234555544455555 677899999999976543332222111112223
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
++..+|++++|+|+.++++..+...+..+... + .|+++++||+|..
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLRIAGLILEA-G----KALVIVVNKWDLV 296 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-C----CcEEEEEECcccC
Confidence 46778999999999888998888777766543 2 2899999999987
No 43
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.58 E-value=4.7e-14 Score=124.04 Aligned_cols=126 Identities=24% Similarity=0.187 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|.+++|||||+|.|+|...+... ..+.|.......+.+..+..+.++||||+... .+......+...+ .
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~--~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tl-e 264 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAAD--QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATL-E 264 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeecc--CCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHH-H
Confidence 79999999999999999999998743222 23345444555566645678999999998431 1222233343332 2
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+|++++.+...... ...+... +. ...|+++|+||+|....
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh
Confidence 3567899999999976665544333 3334333 31 12389999999998654
No 44
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.58 E-value=7.1e-14 Score=110.42 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
+.|+++|++|+|||||+|.|++..... ....+.|........... .+..++++||||...+ ....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-----------TNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc--ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-----------HHHH
Confidence 369999999999999999999766422 122344554444444442 3678999999997532 1112
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+..+|++++|+|+.+.........+..+.. .+ .|+++++||+|....
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-AN----VPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEEceecccc
Confidence 233567899999999976665555555555543 22 289999999997643
No 45
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=7.3e-14 Score=124.24 Aligned_cols=126 Identities=18% Similarity=0.177 Sum_probs=81.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
-|+|||.++||||||+|+|++..... .....+|.......+.+..+..++++||||+.........+...+.+ .
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~v--s~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~----~ 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKV--ADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK----H 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccc--cCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----H
Confidence 79999999999999999999876421 22345666666776666335679999999998643222223444443 3
Q ss_pred cCCccEEEEEEeCCC---CCC-HHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVRS---RFS-QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~---~~~-~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+..++++++|+|+.. .-. .....++..+......-...|.++|+||+|....
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 566799999999851 111 1123344444432110012389999999998754
No 46
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=7.4e-15 Score=139.19 Aligned_cols=155 Identities=16% Similarity=0.069 Sum_probs=93.3
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC--CceEEEEeCCCC
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGL 79 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~ 79 (285)
++..+++++|+.+.+| .+++|+|+||+|||||+++|+|...+.+|....+....+.|..+.... ....++.+...
T Consensus 323 ~~~~il~~isl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~- 399 (638)
T PRK10636 323 GDRIILDSIKLNLVPG--SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLA- 399 (638)
T ss_pred CCeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHH-
Confidence 3456899999999999 899999999999999999999998776654332222233333321100 00001111000
Q ss_pred CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhc
Q 023214 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDET 156 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~ 156 (285)
.. ........+..++....-..+ .+...-..+|++++.++.+++.+..++ +++|+ +|++|.... ..
T Consensus 400 -~~--~~~~~~~~~~~~L~~~~l~~~---~~~~~~~~LSgGekqRl~La~~l~~~p---~lLlLDEPt~~LD~~~~--~~ 468 (638)
T PRK10636 400 -RL--APQELEQKLRDYLGGFGFQGD---KVTEETRRFSGGEKARLVLALIVWQRP---NLLLLDEPTNHLDLDMR--QA 468 (638)
T ss_pred -Hh--CchhhHHHHHHHHHHcCCChh---HhcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HH
Confidence 00 000011122222221110000 011111479999999999999887765 78888 999998877 88
Q ss_pred HHHHhhhcCCchhH
Q 023214 157 LEDYLGRECPKPLK 170 (285)
Q Consensus 157 l~~~l~~~~~~~l~ 170 (285)
+.+++..+.++.+.
T Consensus 469 l~~~L~~~~gtvi~ 482 (638)
T PRK10636 469 LTEALIDFEGALVV 482 (638)
T ss_pred HHHHHHHcCCeEEE
Confidence 89988877665444
No 47
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.57 E-value=5.9e-14 Score=112.93 Aligned_cols=115 Identities=20% Similarity=0.222 Sum_probs=79.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccC--------------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 86 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 86 (285)
+|+++|.+|+|||||+|.|++......... ..+.+.........+ .+..+.++||||+.++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence 589999999999999999998765432210 123444444445555 5678999999997642
Q ss_pred HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.. ....++..+|++++|+|+.+..+......+..+.. .+ .|+++++||+|....
T Consensus 76 ---~~----~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~~i~iv~nK~D~~~~ 129 (189)
T cd00881 76 ---SS----EVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-GG----LPIIVAINKIDRVGE 129 (189)
T ss_pred ---HH----HHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-CC----CCeEEEEECCCCcch
Confidence 11 12233457899999999976777666666665554 12 299999999998763
No 48
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.56 E-value=3.9e-14 Score=112.74 Aligned_cols=122 Identities=19% Similarity=0.134 Sum_probs=74.0
Q ss_pred EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccC
Q 023214 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD 102 (285)
Q Consensus 24 lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (285)
++|++|+|||||+|+|++...... ...++|..+......+ . +..+.++||||+.+...........+. ..+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~----~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA--NYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFL----AHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcccc--CCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHH----HHHh
Confidence 589999999999999999864211 1233455555555555 5 788999999998642221111222222 2245
Q ss_pred CccEEEEEEeCCCCC------CHHHH-HHHHHHHHHhCc-----cccCeEEEEEeCCCCCCC
Q 023214 103 GIHAVLVVFSVRSRF------SQEEE-AALHSLQTLFGK-----KIFDYMIVVFTGGDELED 152 (285)
Q Consensus 103 ~~~~~l~v~~~~~~~------~~~~~-~~l~~~~~~~~~-----~~~~~~iil~nk~D~~~~ 152 (285)
++|++++|+|+.+.. +..+. .+...+...... ....|+++|+||+|....
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 689999999996442 22222 222233222110 012499999999998765
No 49
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=2e-14 Score=118.14 Aligned_cols=126 Identities=25% Similarity=0.245 Sum_probs=86.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
.++.+|.++|.+|+|||||+|+|++....+. ...+++.....+ ...+ ++..++|+||||+++....+....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~---- 109 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQ---- 109 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHH----
Confidence 3447889999999999999999995443222 111222222222 2223 5688999999999985444433333
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+...++..|.++.+++++++.-.-+..++.-+.-...+. ++++++|..|...+
T Consensus 110 ~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~---~~i~~VtQ~D~a~p 163 (296)
T COG3596 110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDK---RVLFVVTQADRAEP 163 (296)
T ss_pred HHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCc---eeEEEEehhhhhcc
Confidence 4444567779999999998786666767777666554433 89999999998866
No 50
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.55 E-value=2.2e-14 Score=115.81 Aligned_cols=115 Identities=23% Similarity=0.374 Sum_probs=85.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeEEEEEEE--eeCCceEEEEeCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLF 80 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~----------------~~~~~~t~~~~~~~~~--~~~~~~~~liDtpG~~ 80 (285)
..+|+++|+.++|||||++.|++....... ....+.|......... . .+..++++||||+.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeeccccccc
Confidence 379999999999999999999965532111 0113556666666666 5 78899999999975
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
++ ...+. .....+|++++|+|+...+.......+..+... +- |+++++||+|..
T Consensus 82 ~f-------~~~~~----~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-~~----p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DF-------IKEMI----RGLRQADIAILVVDANDGIQPQTEEHLKILREL-GI----PIIVVLNKMDLI 135 (188)
T ss_dssp HH-------HHHHH----HHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-T-----SEEEEEETCTSS
T ss_pred ce-------eeccc----ceecccccceeeeeccccccccccccccccccc-cc----ceEEeeeeccch
Confidence 32 22222 335677999999999878999888888888664 32 899999999988
No 51
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.55 E-value=1.4e-13 Score=108.58 Aligned_cols=117 Identities=12% Similarity=0.163 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+.+........ .............+ .+ ..+.++||||... +....
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~~ 69 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCC--CccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 799999999999999999998655322211 11222222333334 33 4689999999532 11222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+..+|++++|+|+.++.+... ..++..+....... .|+++|.||+|....
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQ 123 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccc
Confidence 334677899999999975544333 34555555432222 389999999997644
No 52
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.55 E-value=1.4e-13 Score=109.12 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=73.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|++|+|||||++.+++...........+.+... ...... ....+.++||||... +.....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 71 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMITIDGKQIKLQIWDTAGQES-----------FRSITR 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEE--EEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 699999999999999999999876433322222222222 222221 134689999999532 122223
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.++..+|++++|+|+.++-+-.. ..++..++....+. .|++++.||.|...
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~ 123 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLES 123 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence 44678899999999874433332 23444444432222 38999999999864
No 53
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.55 E-value=7.5e-14 Score=109.84 Aligned_cols=115 Identities=20% Similarity=0.163 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|.+|+|||||++.+++....+......+.+. ........ ....+.++||||...+. ....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTL--YKHNAKFEGKTILVDFWDTAGQERFQ-----------TMHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEE--EEEEEEECCEEEEEEEEeCCCchhhh-----------hhhH
Confidence 3799999999999999999987654222111111111 11122221 13457899999965321 1223
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
.++..+|++++|+|++++.+..+ ..++..++.... . .|++++.||.|..
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~p~ivv~nK~Dl~ 117 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-E--IPCIVVANKIDLD 117 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEECccCc
Confidence 44678899999999975555443 345555554422 2 3999999999974
No 54
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.55 E-value=1.5e-13 Score=124.36 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||+|.|++....... ...+.|.......+.+ .+..+.++||||+.++....+.. .+. ....
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs-~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~~--gi~-~~~~ 278 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVS-DIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVERL--GIE-KSFK 278 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHHH--HHH-HHHH
Confidence 89999999999999999999987532221 2245566655566666 68889999999997542111111 111 1223
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++..+|++++|+|++++.+..+. ++..+.. .. .|+++|+||.|....
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLKIN 325 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCCCc
Confidence 46788999999999877776554 4433322 12 289999999997643
No 55
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.55 E-value=9e-14 Score=113.64 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=77.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeEEEEEEEee--------------------------CC-----
Q 023214 21 TVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVLK--------------------------DG----- 68 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~--------------------------~~----- 68 (285)
+|+++|++|+|||||+.+|++.. ....+....+.+..+.+....+. .+
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 79999999999999999998873 22223334455555555444431 02
Q ss_pred -ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhCccccCeEEEEEeC
Q 023214 69 -QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (285)
Q Consensus 69 -~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~iil~nk 146 (285)
..+++|||||..+ +...+......+|++++|+|+..+ ........+..+.. .+. .|+++++||
T Consensus 82 ~~~i~~iDtPG~~~-----------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvNK 146 (203)
T cd01888 82 VRHVSFVDCPGHEI-----------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQNK 146 (203)
T ss_pred ccEEEEEECCChHH-----------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEEc
Confidence 6799999999532 223333445678999999999743 33444445554433 232 278999999
Q ss_pred CCCCCC
Q 023214 147 GDELED 152 (285)
Q Consensus 147 ~D~~~~ 152 (285)
+|....
T Consensus 147 ~Dl~~~ 152 (203)
T cd01888 147 IDLVKE 152 (203)
T ss_pred hhccCH
Confidence 998754
No 56
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.55 E-value=1.6e-13 Score=131.58 Aligned_cols=123 Identities=24% Similarity=0.270 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++++|||||+|.|+|...... ....++|....+....+ .+..+.+|||||+.... ..+...+......
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 350 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQAQI 350 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHHHH
Confidence 6899999999999999999998753222 22356777776766667 67889999999987421 2234455555556
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++..+|++++|+|+..+++..+..++..++.. + .|+++|+||+|....
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-~----~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-G----KPVVLAVNKIDDQAS 398 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEECcccccc
Confidence 67889999999999878888887777776542 2 299999999997643
No 57
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.55 E-value=1.8e-13 Score=109.99 Aligned_cols=131 Identities=22% Similarity=0.260 Sum_probs=88.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC-----CCCcceeEEEEEEEe-eCC--ceEEEEeCCCCCCCCCCc
Q 023214 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-----SSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGS 86 (285)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~-~~~--~~~~liDtpG~~~~~~~~ 86 (285)
..|-.++|++||.+|.|||||+|++.......++.. +.+.|.......... .++ -+++++|||||+|+-. .
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn-N 120 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN-N 120 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccC-c
Confidence 345568999999999999999999986655332211 122233332222222 123 3489999999998743 3
Q ss_pred HHHHHHHHHHHhhc----------------cC--CccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCC
Q 023214 87 EFVGKEIVKCIGMA----------------KD--GIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (285)
Q Consensus 87 ~~~~~~~~~~~~~~----------------~~--~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~ 147 (285)
+..|+.+.+++... .+ .+|+++|.+.+ ++.+.+.+..+++.+.+.. |++.|+.|.
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIaka 194 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKA 194 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeec
Confidence 33344333333211 11 47999999988 6789999999988887763 899999999
Q ss_pred CCCCC
Q 023214 148 DELED 152 (285)
Q Consensus 148 D~~~~ 152 (285)
|.+.-
T Consensus 195 DtlTl 199 (336)
T KOG1547|consen 195 DTLTL 199 (336)
T ss_pred ccccH
Confidence 98865
No 58
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.54 E-value=1e-13 Score=109.53 Aligned_cols=119 Identities=14% Similarity=0.057 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccc--CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRA--SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
+|+++|++|+|||||++.|++......+. ....+|.........+ .+..+.++||||..+.. ....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESLR-----------SLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhhH-----------HHHH
Confidence 58999999999999999998754321111 1223444445555666 67889999999976421 1222
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+.++|++++|+|+.+.-+... ...+..+..... ....|+++++||+|....
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPDA 122 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccccC
Confidence 34678899999999863322111 122222221100 112499999999997654
No 59
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.54 E-value=1.5e-13 Score=107.33 Aligned_cols=116 Identities=23% Similarity=0.301 Sum_probs=75.2
Q ss_pred EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCC
Q 023214 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG 103 (285)
Q Consensus 24 lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (285)
|+|++|+|||||+|.|+|...+.. ...++|..+......+ .+..+.++||||+.++..... ...+...+... +.
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 589999999999999999863322 1234555555566666 567899999999976544321 12222222222 68
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 104 ~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+|++++|+|+.+. .. ....+..+.. .+ .|+++++||+|....
T Consensus 75 ~d~vi~v~d~~~~-~~-~~~~~~~~~~-~~----~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 75 PDLIVNVVDATNL-ER-NLYLTLQLLE-LG----LPVVVALNMIDEAEK 116 (158)
T ss_pred CcEEEEEeeCCcc-hh-HHHHHHHHHH-cC----CCEEEEEehhhhccc
Confidence 8999999999632 22 2233333332 12 389999999998654
No 60
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=3.2e-13 Score=117.87 Aligned_cols=127 Identities=18% Similarity=0.157 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
..|+|||.++||||||+|+|++..+- . .....+|..+....+.+..+..++++||||+.+.......+...+.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~-v-a~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flr---- 232 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPK-I-ADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLK---- 232 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCc-c-CCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHH----
Confidence 47899999999999999999986532 1 22234566666666666456789999999997533222223333333
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..++++++|+|+++.-+..+. .+...+......-...|+++|+||+|....
T Consensus 233 hie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 233 HIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred HhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 34567999999999744333333 333444432111112489999999998654
No 61
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.54 E-value=2.2e-13 Score=106.85 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
+|+++|++|+|||||++.+++...... ...+.+.........+ .+ ..+.++||||...+ .....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~-----------~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERF-----------RSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HHHHH
Confidence 799999999999999999998875332 1222233322333333 33 35899999995421 11222
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+..+|++++|+|++++-+... ..++..+....+. ..|++++.||.|...
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~ 119 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSD 119 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccc
Confidence 33577899999999975544333 2444444443332 239999999999854
No 62
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.54 E-value=1.9e-13 Score=125.40 Aligned_cols=125 Identities=22% Similarity=0.295 Sum_probs=85.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH-
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI- 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~- 97 (285)
..+|+++|++|+|||||+|.|++...... ....+.|.........+ .+..+.++||||+....... ...+....+
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~-s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~~ 286 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVV-DDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASLR 286 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHHH
Confidence 48999999999999999999998864222 12334555444444555 67788999999985321111 111111111
Q ss_pred -hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 -GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 -~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|++++.+..+...+..+... + .|+++|+||+|+...
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~-~----~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA-G----RALVLAFNKWDLVDE 337 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCh
Confidence 2346788999999999888888887766665542 2 289999999998753
No 63
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.53 E-value=1.5e-13 Score=107.94 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=72.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
+|+++|++|+|||||++.+++.......... .+............ ...+.++||||...+. .....
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-----------~~~~~ 68 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHT--IGVEFGSKIIRVGGKRVKLQIWDTAGQERFR-----------SVTRS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCc--eeeeEEEEEEEECCEEEEEEEEECcchHHHH-----------HhHHH
Confidence 7999999999999999999977643221111 11111122223311 2457899999964321 11223
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.+..+|++++|+|+.++.+... ..++..++....+.. |++++.||+|...
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~ 119 (161)
T cd04113 69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNI--VVILVGNKSDLAD 119 (161)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEEchhcch
Confidence 3567899999999975544443 344444444433333 8999999999864
No 64
>PRK11058 GTPase HflX; Provisional
Probab=99.53 E-value=2.1e-13 Score=122.75 Aligned_cols=126 Identities=22% Similarity=0.156 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
++|+|+|.+++|||||+|.|++...+.. ...+.|.......+.+.....+.++||||+... .+......+...+ .
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl-~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATL-Q 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHH-H
Confidence 6899999999999999999999875422 223445555555565633458899999998532 1233334444433 3
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+|++++.+...... ...+....... .|+++|+||+|....
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE--IPTLLVMNKIDMLDD 324 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC--CCEEEEEEcccCCCc
Confidence 4578899999999976655444433 23344332222 389999999998643
No 65
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.53 E-value=1.7e-13 Score=114.42 Aligned_cols=115 Identities=19% Similarity=0.248 Sum_probs=82.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccc--c--------------cCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKS--R--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (285)
+|+++|+.|+|||||+++|+....... + ....+.|.........+ .+..++++||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFI- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchH-
Confidence 589999999999999999986432110 0 01234555666667777 78899999999997642
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
... ..++..+|++++|+|+.+.........+..+... +. |+++++||+|....
T Consensus 79 ------~~~----~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~~----P~iivvNK~D~~~a 131 (237)
T cd04168 79 ------AEV----ERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-NI----PTIIFVNKIDRAGA 131 (237)
T ss_pred ------HHH----HHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECccccCC
Confidence 122 2234567999999999877877777777766543 32 88999999998753
No 66
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.53 E-value=1.8e-13 Score=120.49 Aligned_cols=125 Identities=28% Similarity=0.363 Sum_probs=93.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (285)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (285)
..| .+++++|++++|||||+|+|+++..... +.-.|+|...-...+.. +|.++.++||.|+-++...-+.++ +.
T Consensus 215 r~G--~kvvIiG~PNvGKSSLLNaL~~~d~AIV-TdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iG--Ie 288 (454)
T COG0486 215 REG--LKVVIIGRPNVGKSSLLNALLGRDRAIV-TDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIG--IE 288 (454)
T ss_pred hcC--ceEEEECCCCCcHHHHHHHHhcCCceEe-cCCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHH--HH
Confidence 445 8999999999999999999999986433 23357787777777777 899999999999986543333322 23
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+.. .....+|.++||+|++..++..+...+..+ ... .|+++|.||.|+...
T Consensus 289 Rs~-~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~----~~~--~~~i~v~NK~DL~~~ 339 (454)
T COG0486 289 RAK-KAIEEADLVLFVLDASQPLDKEDLALIELL----PKK--KPIIVVLNKADLVSK 339 (454)
T ss_pred HHH-HHHHhCCEEEEEEeCCCCCchhhHHHHHhc----ccC--CCEEEEEechhcccc
Confidence 332 335678999999999877788887776611 222 289999999998876
No 67
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.53 E-value=2.8e-13 Score=114.92 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccc--cc------------------CCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKS--RA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~--~~------------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (285)
++|+|+|+.|+|||||++.|+....... +. ...+.+.........+ .+..++++||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 6899999999999999999985322111 00 0124555556667777 7889999999998
Q ss_pred CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++. ... ..++..+|++++|+|+..++.......+..+... + .|+++++||+|....
T Consensus 82 ~df~-------~~~----~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~-~----~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDFS-------EDT----YRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR-G----IPIITFINKLDREGR 138 (267)
T ss_pred hHHH-------HHH----HHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc-C----CCEEEEEECCccCCC
Confidence 7542 111 2234567999999999767776666666554432 2 289999999997655
No 68
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.53 E-value=3.4e-13 Score=106.54 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
.+|+++|+.|+|||||++.+++...... . ..|....+ ..... .+ ..+.++||||...+ ..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~-~---~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD-C---PHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQERF-----------RA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-C---CcccceeEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HH
Confidence 6899999999999999999997753221 1 11222221 22223 22 35789999995421 12
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.....+.++|++++|+|++++-+... ..++..+.....+. .|++++.||.|....
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQ 122 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc
Confidence 22334678999999999975544333 23444443332222 489999999997643
No 69
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.52 E-value=2.2e-13 Score=107.43 Aligned_cols=117 Identities=19% Similarity=0.178 Sum_probs=73.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
+|+++|++|+|||||++.+++...... . ...+............ ....+.++||||...+ . .....
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~---~~~~~ 68 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSK-Y-LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY--------L---EVRNE 68 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-C-CCccceeEEEEEEEECCeEEEEEEEECCccHHH--------H---HHHHH
Confidence 799999999999999999998875332 1 1112222212222221 2356889999997431 1 12233
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc---cccCeEEEEEeCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK---KIFDYMIVVFTGGDEL 150 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~---~~~~~~iil~nk~D~~ 150 (285)
.+.++|++++|+|++++-+... ..++..+.....+ ....|++++.||.|..
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 4678899999999975543322 3455555554432 1235899999999986
No 70
>PRK09866 hypothetical protein; Provisional
Probab=99.52 E-value=1.6e-11 Score=112.64 Aligned_cols=85 Identities=18% Similarity=0.265 Sum_probs=58.6
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCC
Q 023214 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (285)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D 148 (285)
..++++||||+..+.. ..+...+.. .+..+|+++||+|+...++..+...+..++.. +... |+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~~--PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQSV--PLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCCC--CEEEEEEccc
Confidence 5689999999985432 113333333 36678999999999867888888888777664 3212 8999999999
Q ss_pred CCCCC---hhcHHHHhh
Q 023214 149 ELEDN---DETLEDYLG 162 (285)
Q Consensus 149 ~~~~~---~~~l~~~l~ 162 (285)
..... .+.+..++.
T Consensus 301 l~dreeddkE~Lle~V~ 317 (741)
T PRK09866 301 QQDRNSDDADQVRALIS 317 (741)
T ss_pred CCCcccchHHHHHHHHH
Confidence 86421 244555543
No 71
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.52 E-value=2.1e-13 Score=123.97 Aligned_cols=120 Identities=27% Similarity=0.350 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH-HHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE-IVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~-~~~~~~ 98 (285)
.+|+++|++|+|||||+|.|++....... ...+.|.........+ .+..+.++||||+.++. ..+... +.. ..
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi~~-~~ 289 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGIER-SR 289 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHHHH-HH
Confidence 79999999999999999999987642121 2234555554555556 67889999999987532 111111 222 22
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+..+|++++|+|++++.+..+...+.. .. . .|+++|+||+|....
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~~-~--~piiiV~NK~DL~~~ 336 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILEE----LK-D--KPVIVVLNKADLTGE 336 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHHh----cC-C--CCcEEEEEhhhcccc
Confidence 34677899999999987777665444332 12 2 289999999998754
No 72
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.52 E-value=6.6e-13 Score=104.51 Aligned_cols=121 Identities=21% Similarity=0.280 Sum_probs=75.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH---Hh
Q 023214 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC---IG 98 (285)
Q Consensus 22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~---~~ 98 (285)
|+++|++|+|||||+|.|++...........+.|...... . .+..++++||||+...... ......+... +.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--N--VNDKFRLVDLPGYGYAKVS-KEVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--E--ccCeEEEecCCCccccccC-HHHHHHHHHHHHHHH
Confidence 7999999999999999999533222212222334333222 2 2338999999998765332 1111222222 11
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
......+.+++++|.....+......+.++... + .|++++.||+|....
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~ 125 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK 125 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh
Confidence 223456788899998756666666666666543 3 289999999998754
No 73
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.52 E-value=4.3e-13 Score=106.13 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|++|+|||||++.+++...........+ .......+.... ...+.++||||...+ . ....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~D~~g~~~~--------~---~~~~ 70 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIG--IDFKIRTIELDGKKIKLQIWDTAGQERF--------R---TITT 70 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCcc--ceEEEEEEEECCEEEEEEEEeCCchHHH--------H---HHHH
Confidence 7999999999999999999997763222111112 222222333311 245889999995432 1 1122
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+..+|++++|+|+.++.+-.. ..++..+....... .|++++.||.|...
T Consensus 71 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~ 122 (167)
T cd01867 71 AYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEE 122 (167)
T ss_pred HHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence 34578899999999975544333 23444444432222 38999999999874
No 74
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.52 E-value=3.5e-13 Score=106.43 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|++|+|||||++.+++......-.+..+ ........... ....+.++||||...+ .....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~l~Dt~g~~~~-----------~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG--IDFKVKTVFRNDKRVKLQIWDTAGQERY-----------RTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEECCEEEEEEEEECCChHHH-----------HHHHH
Confidence 5899999999999999999998764222111111 11111222221 1246899999996431 11223
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+.++|++++|+|..++-+... ..++..+...... ..|++++.||+|....
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~ 121 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDE 121 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcc
Confidence 44788999999999864433322 2344444433222 2389999999997643
No 75
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.52 E-value=6.6e-13 Score=103.15 Aligned_cols=119 Identities=25% Similarity=0.237 Sum_probs=77.1
Q ss_pred EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCC
Q 023214 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG 103 (285)
Q Consensus 24 lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (285)
++|+.|+|||||+|.|++....... ...+.+............+..+.++||||+.++........... ...+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~----~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA----RRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHH----HHHHHh
Confidence 5899999999999999987654322 22233444434444442367899999999987654433221222 223466
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 104 ~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+|++++|+++....+............ .. .|+++++||.|....
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~---~~--~~~ivv~nK~D~~~~ 119 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE---RG--KPVLLVLNKIDLLPE 119 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh---cC--CeEEEEEEccccCCh
Confidence 799999999976666555542222221 12 289999999998765
No 76
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.52 E-value=2.4e-13 Score=105.79 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEE--Eee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT--VLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+++|++|+|||||+|.+++........ .|....+... ... ....+.++|+||... +...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~ 65 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYK----STIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSI 65 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccC----CceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHH
Confidence 379999999999999999999877643311 1222222222 221 235688999999642 1112
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
....+..+|++++|+|+.++-+... ..++..+....... .|++++.||.|..
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~ 118 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPEN--IPIILVGNKIDLE 118 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEccccc
Confidence 3344677899999999974322222 23444444432122 3999999999986
No 77
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.51 E-value=3.6e-13 Score=105.89 Aligned_cols=117 Identities=21% Similarity=0.181 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|++|+|||||+|++++...........+.+.. .....+. .+..+.++||||...+ .....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~v~~~~~~~~~~i~D~~G~~~~-----------~~~~~ 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFL--TQTVNLDDTTVKFEIWDTAGQERY-----------RSLAP 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCchHHH-----------HHHHH
Confidence 68999999999999999999988753322212221111 1222231 2346889999995321 11122
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+.++|++++|+|+.+.-+... ..++..+....... .|++++.||.|...
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~ 120 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPN--IIIALVGNKADLES 120 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence 34567899999999864433222 34445555543233 38999999999763
No 78
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.51 E-value=4.7e-13 Score=116.74 Aligned_cols=127 Identities=19% Similarity=0.183 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
..|+|||.+++|||||+|+|++.....+ ....+|.........+..+..++|+||||+.+.......+...+.+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va--~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrh--- 232 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIA--DYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKH--- 232 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcccc--CCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHH---
Confidence 5789999999999999999998753211 12234555566666663347899999999975332222233343333
Q ss_pred ccCCccEEEEEEeCCCC---CCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSR---FSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~---~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+..++++++|+|+.+. -...+. .+...+......-...|++||+||+|....
T Consensus 233 -ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 233 -IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred -HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 3456999999998633 122222 233333332111122489999999998654
No 79
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.51 E-value=4.2e-13 Score=106.84 Aligned_cols=115 Identities=14% Similarity=0.181 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||++.|++... .. . ..|.........+ .+..+.++||||...+ ......
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~-~~-~---~~t~g~~~~~~~~-~~~~l~l~D~~G~~~~-----------~~~~~~ 77 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDI-DT-I---SPTLGFQIKTLEY-EGYKLNIWDVGGQKTL-----------RPYWRN 77 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC-CC-c---CCccccceEEEEE-CCEEEEEEECCCCHHH-----------HHHHHH
Confidence 6999999999999999999998743 11 1 1222223334444 5678999999996532 112233
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++..+|++++|+|+.++-+... ..++..+... ......|++++.||.|....
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 78 YFESTDALIWVVDSSDRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccC
Confidence 4678899999999975433222 1222222211 00112499999999997643
No 80
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.51 E-value=7.2e-14 Score=119.13 Aligned_cols=115 Identities=24% Similarity=0.292 Sum_probs=78.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccc--ccC--------------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKS--RAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (285)
+|+|+|++|+|||||++.|++...... +.. ..+.+.........+ .+..++++||||..++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence 589999999999999999985432111 100 113344444555666 6788999999997642
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..... .++..+|++++|+++...........+..+... + .|.++++||+|....
T Consensus 78 -----~~~~~----~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-~----~p~iivvNK~D~~~~ 131 (268)
T cd04170 78 -----VGETR----AALRAADAALVVVSAQSGVEVGTEKLWEFADEA-G----IPRIIFINKMDRERA 131 (268)
T ss_pred -----HHHHH----HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCccCCC
Confidence 12222 234567999999999767777666666655432 3 289999999998765
No 81
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.51 E-value=3.2e-13 Score=109.90 Aligned_cols=125 Identities=17% Similarity=0.156 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
+|+|+|.+|+|||||++.+++... +.... ...+.........+ .+ ..+.++||||...+.... ..+......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~-pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~---~~e~~~~~~ 75 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYI-PTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTA---GQEWMDPRF 75 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccC-CccccccceeEEEE-CCEEEEEEEEeCCCcccCCccc---hhHHHHHHH
Confidence 799999999999999999997653 22221 11111111122333 44 457899999987543221 222222222
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-ccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~~iil~nk~D~~~ 151 (285)
.++..+|++++|+|++++-+... ..++..+..... .....|++++.||+|...
T Consensus 76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 34678999999999975544443 233444444321 112349999999999854
No 82
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.51 E-value=6.7e-13 Score=118.84 Aligned_cols=124 Identities=19% Similarity=0.150 Sum_probs=80.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
.|+|||.++||||||+|+|++..+- . .....+|..+....+.+..+..++|+||||+.........+...+.+.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k-I-a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrh---- 233 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK-I-ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRH---- 233 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc-c-ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHH----
Confidence 8999999999999999999987632 1 223445667777767663378899999999975322222233343333
Q ss_pred cCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 101 KDGIHAVLVVFSVRSR---FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~---~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
...++++++|+|+++. -...+ ..+...+......-...|.+||+||+|+.
T Consensus 234 ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 234 IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 3456999999999532 11122 23334444331111234999999999964
No 83
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.51 E-value=2.7e-13 Score=107.02 Aligned_cols=119 Identities=22% Similarity=0.185 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||++.+++...... ..+.............. ....+.++||||...+.. + ...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~--------~---~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCSK-NICTLQITDTTGSHQFPA--------M---QRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCcchheEEEEEEECC-EEEEEEEEECCCCCcchH--------H---HHH
Confidence 6899999999999999999997663222 11111111111111111 234588999999865321 1 122
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcc-ccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~-~~~~~iil~nk~D~~~ 151 (285)
++..+|++++|+|++++-+... ..++..+....+.. ...|+++|.||.|...
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 3567899999999976655543 44556666554321 2349999999999764
No 84
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.51 E-value=5e-13 Score=108.46 Aligned_cols=116 Identities=18% Similarity=0.280 Sum_probs=76.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc-cccccc-------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR-AFKSRA-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~-~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (285)
++|+++|++|+|||||++.+++.. .+.... ...+.+.........+ .+..+.++||||..++.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~-- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADFG-- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHHH--
Confidence 699999999999999999999631 221111 1134444444455555 67889999999976431
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.....++..+|++++|+|+.++........+..+.. .. .|+++++||+|....
T Consensus 80 ---------~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 80 ---------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA 132 (194)
T ss_pred ---------HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence 122234667899999999975554444444443322 12 289999999998643
No 85
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.50 E-value=5e-13 Score=106.07 Aligned_cols=118 Identities=19% Similarity=0.158 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++...... .. .............+ .+ ..+.++||||..++. .. ..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~-~~-~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-------~~---~~ 69 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPER-TE-ATIGVDFRERTVEI-DGERIKVQLWDTAGQERFR-------KS---MV 69 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCc-cc-cceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHH-------Hh---hH
Confidence 6899999999999999999987653221 11 11111122223333 33 568999999965321 11 12
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|++++-+.... .++..+.... .....|++++.||.|...
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS-LPNEVPRILVGNKCDLRE 123 (170)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc-CCCCCCEEEEEECccchh
Confidence 3346788999999999756554443 3344444432 112349999999999754
No 86
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.50 E-value=9.1e-14 Score=110.07 Aligned_cols=115 Identities=18% Similarity=0.191 Sum_probs=72.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-cee-------------------------------------------
Q 023214 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-TST------------------------------------------- 57 (285)
Q Consensus 22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~-t~~------------------------------------------- 57 (285)
|+++|..++|||||+|+|+|....+.+..+... ...
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999999866655433210 000
Q ss_pred ---------EEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHH
Q 023214 58 ---------CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSL 128 (285)
Q Consensus 58 ---------~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~ 128 (285)
.............+.|+||||+.+....... .+..+++.+|++++|+++...++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~-------~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE-------ITEEYLPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH-------HHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHH-------HHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence 0111111112445899999999764333322 222334678999999999867777766666555
Q ss_pred HHHhCccccCeEEEEEeCC
Q 023214 129 QTLFGKKIFDYMIVVFTGG 147 (285)
Q Consensus 129 ~~~~~~~~~~~~iil~nk~ 147 (285)
..... .++++|+||+
T Consensus 154 ~~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDK----SRTIFVLNKA 168 (168)
T ss_dssp HTTTC----SSEEEEEE-G
T ss_pred hcCCC----CeEEEEEcCC
Confidence 54322 2688889984
No 87
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.50 E-value=7.9e-13 Score=104.68 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=72.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+++|++|+|||||++.+.+. +..... +|.......... .+..+.++||||...+ ......+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~~~~---~t~g~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPKKVA---PTVGFTPTKLRL-DKYEVCIFDLGGGANF-----------RGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCcccc---CcccceEEEEEE-CCEEEEEEECCCcHHH-----------HHHHHHH
Confidence 4899999999999999999987 222221 222222333444 5778999999996421 1223345
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+..+|+++||+|+.++-+..+ ..++..+.... .....|++||.||.|....
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKNA 115 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcCC
Confidence 678899999999974433322 22333332211 1123499999999998654
No 88
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=3e-13 Score=105.54 Aligned_cols=118 Identities=17% Similarity=0.210 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+|+|.+|+|||.|+..+.+...+.+-.+..|+... ...+++. ....+.||||.|.. +++..+.
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~--~rt~e~~gk~iKlQIWDTAGQE-----------RFrtit~ 76 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFK--IRTVELDGKTIKLQIWDTAGQE-----------RFRTITS 76 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEE--EEEeeecceEEEEEeeeccccH-----------HHhhhhH
Confidence 79999999999999999999987764443444444433 4444441 23469999999964 3445666
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+|+++|++|+|+|++..-|-.. ..|+..+.......+ |.++|.||+|..+.
T Consensus 77 syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 77 SYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK 129 (205)
T ss_pred hhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh
Confidence 78999999999999986666555 466777777666655 89999999998754
No 89
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.50 E-value=4.8e-13 Score=108.37 Aligned_cols=116 Identities=17% Similarity=0.263 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc---ccccc--cCCCCcceeEEEEEEEee-------------CCceEEEEeCCCCCCC
Q 023214 21 TVVLVGRTGNGKSATGNSILGRR---AFKSR--ASSSGVTSTCEMQRTVLK-------------DGQVVNVIDTPGLFDF 82 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~---~~~~~--~~~~~~t~~~~~~~~~~~-------------~~~~~~liDtpG~~~~ 82 (285)
+|+++|+.|+|||||++.+++.. .+... ....+.|.........+. .+..++++||||+.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 79999999999999999999731 11110 112244555554444441 256799999999732
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
... .+......+|++++|+|+....+..+...+.... ..+ .|+++++||+|....
T Consensus 81 ------~~~----~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~~~----~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 81 ------LIR----TIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-ILC----KKLIVVLNKIDLIPE 135 (192)
T ss_pred ------HHH----HHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-HcC----CCEEEEEECcccCCH
Confidence 112 2223345679999999997666665554444332 223 289999999998754
No 90
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.50 E-value=4.3e-13 Score=105.30 Aligned_cols=117 Identities=20% Similarity=0.171 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
+|+++|++|+|||||++.+++...........+.+.. .....+. ....+.++||||...+. .....
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~ 68 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFK--VKTLTVDGKKVKLAIWDTAGQERFR-----------TLTSS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEE--EEEEEECCEEEEEEEEECCCchhhh-----------hhhHH
Confidence 7999999999999999999987643221212222221 2222231 13468999999965321 11123
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.+..+|++++|+|+.++-+.... .++..+..... ....|++++.||.|...
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKEN 120 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccc
Confidence 35678999999998755443332 33444444422 22348999999999873
No 91
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.50 E-value=1.7e-12 Score=107.70 Aligned_cols=137 Identities=17% Similarity=0.198 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccC--CC---------------------------------------------
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS--SS--------------------------------------------- 52 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~--~~--------------------------------------------- 52 (285)
+.|+++|++|+||||++++|+|...++.+.. ..
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~ 106 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT 106 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999853332211 10
Q ss_pred --CcceeEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhccCC-ccEEEEEEeCCCCCCHHH-HHHHH
Q 023214 53 --GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDG-IHAVLVVFSVRSRFSQEE-EAALH 126 (285)
Q Consensus 53 --~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~~~~~~~~-~~~l~ 126 (285)
+.+..+-...+..+....++||||||+..... ........+...+..++.. .+.+++|+++...++..+ ....+
T Consensus 107 ~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~ 186 (240)
T smart00053 107 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAK 186 (240)
T ss_pred CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHH
Confidence 00000001111112236799999999974321 1233445555555555553 458889999876677655 34444
Q ss_pred HHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214 127 SLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 127 ~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~ 162 (285)
.+... ..++++|+||.|..... ..+.+.+.
T Consensus 187 ~ld~~-----~~rti~ViTK~D~~~~~-~~~~~~~~ 216 (240)
T smart00053 187 EVDPQ-----GERTIGVITKLDLMDEG-TDARDILE 216 (240)
T ss_pred HHHHc-----CCcEEEEEECCCCCCcc-HHHHHHHh
Confidence 44332 23899999999988653 22444444
No 92
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.50 E-value=3.6e-13 Score=105.97 Aligned_cols=118 Identities=25% Similarity=0.243 Sum_probs=71.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||++.+++.... ....+. .. ......... .+ ..+.++||||..++.. .
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t-~~-~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV-TDYDPT-IE-DSYTKQCEI-DGQWAILDILDTAGQEEFSA-----------M 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-cccCCC-cc-ceEEEEEEE-CCEEEEEEEEECCCCcchhH-----------H
Confidence 369999999999999999999976532 222111 11 111112223 33 4588999999764321 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
....+.++|++++|+|+.+.-+... ..++..+..... ....|++++.||+|....
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQ 122 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCcccccc
Confidence 2233567899999999975443333 233333333322 122389999999997643
No 93
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.50 E-value=5.1e-13 Score=105.49 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++...... ...+.+.......... .+ ..+.++||||...+ ....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-----------~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERF-----------RTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HHHH
Confidence 6899999999999999999997654221 1112222222233333 33 35889999995432 1112
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+..+|++++|+|++++-+... ..++..+....... .|++++.||.|....
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDK 122 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccc
Confidence 234678899999999975433332 23444444432222 389999999997543
No 94
>PRK04213 GTP-binding protein; Provisional
Probab=99.49 E-value=1.4e-12 Score=106.33 Aligned_cols=122 Identities=23% Similarity=0.245 Sum_probs=73.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH---
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK--- 95 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~--- 95 (285)
..+|+++|++|+|||||+|.|+|... ..+. ..++|.... ...+ + .+.++||||++............+..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~-~~~~t~~~~--~~~~--~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKV-RVGK-RPGVTRKPN--HYDW--G-DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-ccCC-CCceeeCce--EEee--c-ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 37999999999999999999998763 3322 224444322 2222 2 68999999986544433222233332
Q ss_pred -HHhhccCCccEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 96 -CIGMAKDGIHAVLVVFSVRSRFS-----------QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 -~~~~~~~~~~~~l~v~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++......++++++|+|...... ..+...+..+.. .. .|+++|+||+|....
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LG--IPPIVAVNKMDKIKN 145 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cC--CCeEEEEECccccCc
Confidence 22223455788999999853211 122233333332 12 289999999997654
No 95
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.49 E-value=5.7e-13 Score=105.07 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++...... . ....+.......... .+ ..+.++||||... +....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD-S-KSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-C-CCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence 6899999999999999999997764211 1 122222222333333 33 3588999999542 11112
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...+..++++++|+|+.++.+... ..++..+....... .|++++.||.|...
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~ 122 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence 233567899999999975444433 23444454443222 38999999999754
No 96
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.49 E-value=5.3e-13 Score=104.90 Aligned_cols=116 Identities=20% Similarity=0.229 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++...... .....+.......... .+ ..+.++||||...+ ....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERF-----------RSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHH-----------HHHH
Confidence 3799999999999999999998764222 1112222222233333 33 46889999995421 1122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...+..+|++++|+|+.++.+.... .++..+.....+. .|++++.||.|...
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~ 119 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLED 119 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhccc
Confidence 2335678999999999754444332 3344444332222 39999999999764
No 97
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.49 E-value=1.2e-12 Score=104.01 Aligned_cols=116 Identities=17% Similarity=0.098 Sum_probs=72.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+++|++|+|||||++.|.+...... ..|....+....+ .+..+.++||||... +...+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~~~ 76 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPYWR 76 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence 48999999999999999999998753211 1122222334445 577899999999642 112233
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|+.+..+... ...+..+..... ....|+++++||.|....
T Consensus 77 ~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 77 NYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC
Confidence 34577899999999864322211 122222211100 112389999999998654
No 98
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.48 E-value=9.3e-13 Score=126.39 Aligned_cols=125 Identities=22% Similarity=0.261 Sum_probs=86.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH-
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI- 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~- 97 (285)
..+|+++|++|+|||||+|+|++....... ...++|.........+ .+..+.++||||+....... ...+....+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~--~~~e~~~~~r 525 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKL--TGAEYYSSLR 525 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccc--hhHHHHHHHH
Confidence 379999999999999999999988642111 1234455444444555 67789999999986432221 111221111
Q ss_pred -hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 -GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 -~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|++++.+..+...+..+... + .|+++|+||+|+...
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-~----~piIiV~NK~DL~~~ 576 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-G----RALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEEchhcCCh
Confidence 2346788999999999888888887776665442 2 289999999998754
No 99
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.48 E-value=1.1e-12 Score=103.08 Aligned_cols=114 Identities=24% Similarity=0.234 Sum_probs=71.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
+|+++|++|+|||||++.+++.... ... ..|....+ ....+. ....+.++||||...+ ..
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~-~~~---~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----------~~ 66 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT-KDY---KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF-----------DA 66 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCC---CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH-----------HH
Confidence 7999999999999999999976532 211 12222222 222221 2356899999995421 11
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
....++..+|++++|+++.++-+... ..++..+..... . .|++++.||.|....
T Consensus 67 ~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 67 ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-D--IPMVLVQTKIDLLDQ 121 (162)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhcccc
Confidence 22334678899999999874433333 233334433322 2 399999999998653
No 100
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.48 E-value=8e-13 Score=103.74 Aligned_cols=117 Identities=14% Similarity=0.084 Sum_probs=72.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+++|++|+|||||++.+++...+..... +|.......... .+..+.++||||...+. .....+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMSGQGKYR-----------GLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECCCCHhhH-----------HHHHHH
Confidence 589999999999999999998653222211 122222222333 56789999999975321 122234
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-ccccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~~iil~nk~D~~~~ 152 (285)
+.++|++++|+|+.++.+... ...+..+..... .....|+++++||.|....
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 678899999999975543322 223333322110 0112499999999998654
No 101
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.48 E-value=5.4e-13 Score=105.54 Aligned_cols=113 Identities=21% Similarity=0.164 Sum_probs=72.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
+|+++|++|+|||||++.++..... .. ..+|....+....+. ....+.++||||...+....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~-~~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------- 66 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE-KK---YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR----------- 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CC---CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc-----------
Confidence 7999999999999999999855421 11 122333333332221 23468899999986542211
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...+..+|++++|+|++++-+... ..++..+....+ ..|++++.||+|...
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~ 118 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKD 118 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhccc
Confidence 123568899999999975544433 234555555433 239999999999763
No 102
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.48 E-value=8.7e-13 Score=102.71 Aligned_cols=114 Identities=21% Similarity=0.167 Sum_probs=69.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 023214 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (285)
Q Consensus 22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (285)
|+++|++|+|||||+|.|++...... . .+|.......... ++..+.++||||...+ ......++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~-~---~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----------~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED-T---IPTVGFNMRKVTK-GNVTLKVWDLGGQPRF-----------RSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC-c---cCCCCcceEEEEE-CCEEEEEEECCCCHhH-----------HHHHHHHH
Confidence 78999999999999999998764222 1 1232333333444 4577999999996431 11222345
Q ss_pred CCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+|++++|+|+.+..+... ...+..+..... ....|+++++||.|....
T Consensus 66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC
Confidence 67899999999863322111 112222211100 112389999999997654
No 103
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.48 E-value=7.6e-13 Score=107.13 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++........ ..+............ . ...+.|+||||...+ ....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNF-IATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERF-----------RSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCc-CCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHhh
Confidence 379999999999999999998766422111 111111111111222 2 245889999995321 1122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...+..+|++++|+|+.++-+... ..++..+....... .|++++.||.|+..
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~ 120 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSG 120 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchh
Confidence 234678899999999975544332 34555555543323 38999999999753
No 104
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.48 E-value=6.2e-13 Score=104.49 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++.... ....+. +.......+.. .+ ..+.++||||...+.. ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t--~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPT--IEDSYRKQIEV-DGQQCMLEILDTAGTEQFTA-----------MR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCc--hhhhEEEEEEE-CCEEEEEEEEECCCccccch-----------HH
Confidence 68999999999999999999976532 211111 11111122223 33 4577899999765321 11
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++.++|++++|+|++++-+... ..++..+..... ....|++++.||.|...
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLED 120 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 233677899999999975544333 233444444322 12348999999999754
No 105
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.48 E-value=9.4e-13 Score=103.16 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=71.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
+|+++|++|+|||||+|.+++....... ....+.........+. ....+.++||||...+ .. ....
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~---~~~~ 68 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY--------HA---LGPI 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchHHH--------HH---hhHH
Confidence 7999999999999999999977643221 1111112222223221 1235889999995422 11 1222
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.+..+|++++|+|+.++-+.... .++..+...... ..|+++++||.|...
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~ 119 (162)
T cd04123 69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER 119 (162)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 35678999999998644433332 333444444333 238999999999774
No 106
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.48 E-value=1.5e-12 Score=118.07 Aligned_cols=126 Identities=16% Similarity=0.085 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
-.|+|||.++||||||+|.|++..... ....++|.......+.+ .+..++|+||||+.........+...+.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkI--adypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLr---- 232 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKI--ADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLR---- 232 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccc--cccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHH----
Confidence 579999999999999999999876422 22245566666666666 67789999999997532222223333333
Q ss_pred ccCCccEEEEEEeCCCCC----CHHHHH-HHHHHHHHhC---------ccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRF----SQEEEA-ALHSLQTLFG---------KKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~----~~~~~~-~l~~~~~~~~---------~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+|+++.- ...+.. +...+..... .-...|+|||+||+|....
T Consensus 233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da 299 (500)
T PRK12296 233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA 299 (500)
T ss_pred HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence 345679999999986311 111222 1222222211 1112499999999998644
No 107
>CHL00071 tufA elongation factor Tu
Probab=99.48 E-value=6.7e-13 Score=119.55 Aligned_cols=119 Identities=17% Similarity=0.229 Sum_probs=84.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (285)
+..+|+++|+.++|||||+++|++......+ ....+.|.........+ .+..++++||||+.+
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~-- 87 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD-- 87 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHH--
Confidence 3489999999999999999999975321110 01246666665555555 577899999999642
Q ss_pred CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+...+......+|++++|+|+...+...+...+..+... +.+ ++++++||+|....
T Consensus 88 ---------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~~---~iIvvvNK~D~~~~ 143 (409)
T CHL00071 88 ---------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GVP---NIVVFLNKEDQVDD 143 (409)
T ss_pred ---------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEccCCCCH
Confidence 122222334577999999999877888888888776654 432 47788999998754
No 108
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.47 E-value=1.1e-12 Score=104.07 Aligned_cols=114 Identities=16% Similarity=0.064 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+++|..|+|||||++.+.+... .. ..+|....+....+ .+..+.++||||...+.. ....+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~~----~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~~~-----------~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-MQ----PIPTIGFNVETVEY-KNLKFTIWDVGGKHKLRP-----------LWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-CC----cCCcCceeEEEEEE-CCEEEEEEECCCChhcch-----------HHHHH
Confidence 589999999999999999998642 21 22343333444445 577899999999764311 12233
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+.++|++++|+|.+++-+..+ ..++..+..... ....|++|+.||.|....
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGA 115 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccC
Confidence 677899999999974433222 222332322111 111389999999997543
No 109
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.47 E-value=1.4e-12 Score=105.38 Aligned_cols=114 Identities=10% Similarity=0.005 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||++.+.+..... . .+|.......+.+ .+..+.++||||...+ ......
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~~--~---~~T~~~~~~~i~~-~~~~~~l~D~~G~~~~-----------~~~~~~ 82 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLAQ--H---VPTLHPTSEELTI-GNIKFKTFDLGGHEQA-----------RRLWKD 82 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc--c---CCccCcceEEEEE-CCEEEEEEECCCCHHH-----------HHHHHH
Confidence 699999999999999999999865421 1 1122223344555 5778999999996431 112233
Q ss_pred ccCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
+++++|++++|+|+.+.-+.. ....+..+... ......|++++.||.|...
T Consensus 83 ~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 83 YFPEVDGIVFLVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPG 134 (190)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCC
Confidence 467889999999986432221 12222222221 1112249999999999763
No 110
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.47 E-value=1.6e-12 Score=121.09 Aligned_cols=124 Identities=19% Similarity=0.298 Sum_probs=87.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
++|+++|+.++|||||++.|.+...... ...+.|.....+...+..+..++++||||+.++.. ....
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~-----------~r~r 154 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS-----------MRAR 154 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcchhh-----------HHHh
Confidence 7999999999999999999998764322 22456767666666663344899999999876521 1123
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHh
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL 161 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l 161 (285)
.+..+|++++|+++.+...+.....+..+... + . |+++++||+|....+.+.+...+
T Consensus 155 ga~~aDiaILVVda~dgv~~qT~e~i~~~~~~-~--v--PiIVviNKiDl~~~~~e~v~~~L 211 (587)
T TIGR00487 155 GAKVTDIVVLVVAADDGVMPQTIEAISHAKAA-N--V--PIIVAINKIDKPEANPDRVKQEL 211 (587)
T ss_pred hhccCCEEEEEEECCCCCCHhHHHHHHHHHHc-C--C--CEEEEEECcccccCCHHHHHHHH
Confidence 45678999999999767777776666554432 2 2 89999999998654323344443
No 111
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.46 E-value=9.2e-13 Score=103.22 Aligned_cols=116 Identities=22% Similarity=0.226 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEE-EEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+++|++|+|||||+|.+++.... ....+ |.... ...... .+ ..+.++||||...+. . .
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~---t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~--------~---l 65 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDP---TIEDSYRKQVVI-DGETCLLDILDTAGQEEYS--------A---M 65 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCC---cchheEEEEEEE-CCEEEEEEEEECCCCcchH--------H---H
Confidence 58999999999999999999976532 22211 11111 112222 33 347789999975421 1 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++.++|++++|++..++-+..+. .++..+..... ....|++++.||.|....
T Consensus 66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence 12235678999999998744333332 33344443321 122389999999997653
No 112
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.46 E-value=1.1e-12 Score=102.73 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+++|+.|+|||||++.+++... .. ...|.........+ .+..+.++||||.... .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~----~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VT----TIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CC----CCCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence 589999999999999999998862 22 12233333344444 5678999999997642 1122234
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+..+|++++|+|+.++-+... ...+..+..... ....|++++.||+|....
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA 115 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc
Confidence 567899999999974322221 222222222111 112399999999998764
No 113
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.46 E-value=8.8e-13 Score=125.84 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
++|+++|+.++|||||++.|.+...... ...+.|.....+.+.+ .+..++||||||+.++.. ....
T Consensus 291 pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~~-----------m~~r 356 (787)
T PRK05306 291 PVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVET-NGGKITFLDTPGHEAFTA-----------MRAR 356 (787)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEE-CCEEEEEEECCCCccchh-----------HHHh
Confidence 7999999999999999999987654322 2345677777777777 678899999999886521 1112
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+++.++........+..+... + + |+||++||+|....
T Consensus 357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~~-~--v--PiIVviNKiDl~~a 404 (787)
T PRK05306 357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKAA-G--V--PIIVAINKIDKPGA 404 (787)
T ss_pred hhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc-C--C--cEEEEEECcccccc
Confidence 34567999999999877777777776655442 2 2 89999999998653
No 114
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.46 E-value=1.7e-12 Score=105.72 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=72.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..+|+++|++|+|||||++.+++...... .. .+.........+.+.+ ...+.|+||||...+. ...
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-----------~~~ 72 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGS-YI-TTIGVDFKIRTVEINGERVKLQIWDTAGQERFR-----------TIT 72 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC-cC-ccccceeEEEEEEECCEEEEEEEEeCCCchhHH-----------HHH
Confidence 37999999999999999999997653211 11 1111111122222311 2457899999964321 112
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|++++-+... ..++..+..... ..|++|+.||.|....
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~ 125 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPER 125 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccc
Confidence 334677899999999975544333 234444444322 2389999999997643
No 115
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.46 E-value=1.3e-12 Score=103.39 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++....+... .+.+.........+ .+ ..+.++||||...+ ....
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~~~ 73 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQG--ATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERF-----------RSIT 73 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeEEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HHHH
Confidence 799999999999999999998655422211 11122222233334 33 45788999996432 1122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|+++.-+... ..++..+........ |++++.||.|....
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~--~~i~v~NK~D~~~~ 127 (169)
T cd04114 74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKV--ITILVGNKIDLAER 127 (169)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEECcccccc
Confidence 234677899999999864433322 234444454433333 88999999997643
No 116
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.46 E-value=1.9e-12 Score=103.58 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-----------CCceEEEEeCCCCCCCCCCcHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------DGQVVNVIDTPGLFDFSAGSEF 88 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~liDtpG~~~~~~~~~~ 88 (285)
.+|+++|++|+|||||++.+++.... .... .++..........+. ....+.|+||||...
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------- 75 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFN-PKFI-TTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER------- 75 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-ccCC-CccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------
Confidence 69999999999999999999876542 2111 111111111112110 124588999999432
Q ss_pred HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
+.......+..+|++++|+|+.++-+... ..++..+..... ....|+++|.||.|...
T Consensus 76 ----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 76 ----FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLED 134 (180)
T ss_pred ----HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchh
Confidence 22233345678999999999975444333 234444443211 11238999999999764
No 117
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.46 E-value=1.1e-12 Score=104.77 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccc------ccccC-------CCCcceeEEEEEEEe----eCCceEEEEeCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAF------KSRAS-------SSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~------~~~~~-------~~~~t~~~~~~~~~~----~~~~~~~liDtpG~~~~ 82 (285)
++|+++|++|+|||||++.+++.... ..... ..+++.........+ ..+..+.++||||+.++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 37999999999999999999874311 00000 112333322222222 13456889999998753
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
. . ....++.++|++++|+|+.++.+..+...+..+.. .. .|+++++||+|...
T Consensus 81 ~-------~----~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~ 133 (179)
T cd01890 81 S-------Y----EVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPS 133 (179)
T ss_pred H-------H----HHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCc
Confidence 1 1 12233567899999999976666666554443332 12 28999999999754
No 118
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.46 E-value=1.3e-12 Score=105.54 Aligned_cols=117 Identities=19% Similarity=0.214 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++........ .............. .+ ..+.++||||...+ ....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~-----------~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STIGVDFKIKTVYI-ENKIIKLQIWDTNGQERF-----------RSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HhhH
Confidence 379999999999999999999776422111 11111222223333 22 35789999996432 1122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+.++|++++|+|+.++-+.... .++..+....+.. .|++++.||.|....
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~ 120 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN 120 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc
Confidence 3346789999999999755443332 3444444433322 389999999997643
No 119
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.46 E-value=7.4e-13 Score=104.87 Aligned_cols=116 Identities=18% Similarity=0.103 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|++|+|||||++.+++...... ..+... .......... ....+.++||||...+.... .
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~-----------~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTE-YVPTVF--DNYSATVTVDGKQVNLGLWDTAGQEEYDRLR-----------P 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCcee--eeeEEEEEECCEEEEEEEEeCCCcccccccc-----------h
Confidence 3799999999999999999998764221 111111 1111112221 23468999999987542211 1
Q ss_pred hccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+..+|++++|+|++++.+... ..++..+..... ..|+++++||.|....
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD 119 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc
Confidence 23567899999999975433332 234444444333 2399999999998765
No 120
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.46 E-value=1.5e-12 Score=103.16 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||++.+...... . . .+|....+..... .+..+.++||||...+ ......
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~~-~-~---~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~~ 72 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSV-T-T---IPTVGFNVETVTY-KNVKFNVWDVGGQDKI-----------RPLWRH 72 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCCc-c-c---cCCcccceEEEEE-CCEEEEEEECCCCHHH-----------HHHHHH
Confidence 79999999999999999999865432 1 1 1122222333334 5678999999997531 112234
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~ 151 (285)
++.++|++++|+|+.++.+..+. ...+...+... ...|++++.||+|...
T Consensus 73 ~~~~a~~ii~v~D~t~~~s~~~~--~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 73 YYTGTQGLIFVVDSADRDRIDEA--RQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HhccCCEEEEEEeCCchhhHHHH--HHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 57789999999999754333221 22222222211 1238999999999754
No 121
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.46 E-value=1.7e-12 Score=104.49 Aligned_cols=114 Identities=10% Similarity=0.021 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|.+|+|||||++.+++.... . . .+|.......... .+..+.++||||...+ ......
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~-~-~---~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~-----------~~~~~~ 80 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLA-Q-H---QPTQHPTSEELAI-GNIKFTTFDLGGHQQA-----------RRLWKD 80 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-c-c---CCccccceEEEEE-CCEEEEEEECCCCHHH-----------HHHHHH
Confidence 79999999999999999999986531 1 1 1122222333444 5778999999997531 112234
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
++..+|++++|+|+.++-+-.. ...+..+.... .....|++++.||.|...
T Consensus 81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 81 YFPEVNGIVYLVDAYDKERFAESKRELDALLSDE-ELATVPFLILGNKIDAPY 132 (184)
T ss_pred HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccC
Confidence 5678999999999864321111 11222221110 001238999999999753
No 122
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.46 E-value=1.3e-12 Score=106.60 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEE--EEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
.+|+++|++|+|||||++.+++...... . .+|.... ...+.+. ....+.++||||...+. .
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~-~---~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~-----------~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH-Y---KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG-----------G 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC-C---CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh-----------h
Confidence 3799999999999999999997653221 1 2233222 2223331 13458899999974321 1
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC--ccccCeEEEEEeCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFG--KKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~--~~~~~~~iil~nk~D~~ 150 (285)
.....+.++|++++|+|++++-+-... .++..+...+. .....|+++|.||.|..
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 223347789999999999755444432 23334433221 11234899999999986
No 123
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.46 E-value=1.5e-12 Score=102.75 Aligned_cols=112 Identities=14% Similarity=0.161 Sum_probs=70.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 023214 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (285)
Q Consensus 22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (285)
|+++|++|+|||||++.+++.... .... +|.......... .+..+.++||||...+. .....++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-~~~~---pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~~-----------~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-ESVV---PTTGFNSVAIPT-QDAIMELLEIGGSQNLR-----------KYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-cccc---ccCCcceEEEee-CCeEEEEEECCCCcchh-----------HHHHHHH
Confidence 789999999999999999977532 2211 122122233333 56789999999976431 1122346
Q ss_pred CCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++|++++|+|..++.+... +.++..+.. .....|++++.||.|....
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~---~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPLARQELHQLLQ---HPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHh---CCCCCcEEEEEeCcCCcCC
Confidence 78899999999875443222 222332322 1123499999999997654
No 124
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.46 E-value=1.9e-12 Score=101.92 Aligned_cols=115 Identities=16% Similarity=0.186 Sum_probs=70.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeEEE--EEEEe--eCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 21 TVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEM--QRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~-~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
+|+++|++|+|||||++.+.+.. .++... .+|..+.+ ..... .....+.++||||...+ . .
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~---~ 67 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNY---LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY--------S---D 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccC---CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH--------H---H
Confidence 79999999999999999998542 232221 12222111 12222 12356899999995321 1 1
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.....+..+|++++|+|++++-+... ..++..+.... . ..|+++|.||.|....
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~--~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-K--HMPGVLVGNKMDLADK 122 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECcccccc
Confidence 22234578899999999975543332 23444444432 1 2389999999997643
No 125
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.46 E-value=1.2e-12 Score=118.74 Aligned_cols=117 Identities=19% Similarity=0.262 Sum_probs=83.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc--------------cc---------------CCCCcceeEEEEEEEeeCCc
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RA---------------SSSGVTSTCEMQRTVLKDGQ 69 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~---------------~~~~~t~~~~~~~~~~~~~~ 69 (285)
..+|+++|+.++|||||++.|++...... +. ...|+|.........+ .+.
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~~ 84 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DKY 84 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CCe
Confidence 37999999999999999999985432211 10 1357888888877777 788
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCccccCeEEEEEeCC
Q 023214 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (285)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~ 147 (285)
.++++||||+.++. ..+ ......+|++++|+|+.+ .+.......+.++.. ++.+ ++++++||+
T Consensus 85 ~i~liDtpG~~~~~-------~~~----~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~---~iivviNK~ 149 (425)
T PRK12317 85 YFTIVDCPGHRDFV-------KNM----ITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGIN---QLIVAINKM 149 (425)
T ss_pred EEEEEECCCcccch-------hhH----hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCC---eEEEEEEcc
Confidence 99999999975432 111 122457899999999986 566666666655543 3432 789999999
Q ss_pred CCCC
Q 023214 148 DELE 151 (285)
Q Consensus 148 D~~~ 151 (285)
|...
T Consensus 150 Dl~~ 153 (425)
T PRK12317 150 DAVN 153 (425)
T ss_pred cccc
Confidence 9865
No 126
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.45 E-value=1.4e-12 Score=103.06 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
+|+++|.+|+|||||++.+++...+ .......... ...... .....+.++||||..... . .+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~-------~----~~~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEI---TIPADVTPERVPTTIVDTSSRPQDR-------A----NLAA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCcccce---EeeeeecCCeEEEEEEeCCCchhhh-------H----HHhh
Confidence 7999999999999999999976642 2221111111 111111 134568899999976421 1 1122
Q ss_pred ccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+|+.++-+... ..++..+..... . .|++++.||+|....
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~ 118 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDG 118 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccc
Confidence 3467899999999875555444 235555655432 3 399999999998654
No 127
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.45 E-value=1.8e-12 Score=102.98 Aligned_cols=116 Identities=19% Similarity=0.121 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE--EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
+|+++|++|+|||||++.+++... .... .+|....+. ..... ....+.++||||...+ ....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNY---KATIGVDFEMERFEILGVPFSLQLWDTAGQERF-----------KCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCC---CCceeeEEEEEEEEECCEEEEEEEEeCCChHHH-----------HhhH
Confidence 799999999999999999998763 2222 223322222 22221 1346899999996532 1122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+.++|++++|+|+.++-+... ..++..+.....+ ...|+++|.||.|+...
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSSP 121 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCcc
Confidence 344778999999999974433222 3444444332221 12378999999997543
No 128
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.45 E-value=1.4e-12 Score=107.63 Aligned_cols=116 Identities=18% Similarity=0.166 Sum_probs=73.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
+|+++|++|+|||||++.+++... .... .+|....+ ....... ...+.|+||||...+ .. .
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~---~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~--------~~---l 66 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSY---KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG--------GK---M 66 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCC---CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH--------HH---H
Confidence 799999999999999999997653 2211 22333222 2233322 346889999995421 11 2
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~iil~nk~D~~~ 151 (285)
....+..+|++++|+|++++-+... ..++..+...... ....|+++|.||.|+..
T Consensus 67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 2233678999999999975544433 2455556555432 12237889999999863
No 129
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.45 E-value=2.1e-12 Score=102.92 Aligned_cols=114 Identities=15% Similarity=0.080 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||++.+++..... . .+|....+....+ .+..+.++||||...+ ......
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~--~---~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~-----------~~~~~~ 78 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH--T---SPTIGSNVEEIVY-KNIRFLMWDIGGQESL-----------RSSWNT 78 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC--c---CCccccceEEEEE-CCeEEEEEECCCCHHH-----------HHHHHH
Confidence 799999999999999999998655322 1 2233333444555 5778999999997532 112234
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
++.++|++++|+|++++-+... ...+..+....+ ....|++++.||.|...
T Consensus 79 ~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 79 YYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKG 130 (174)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCC
Confidence 4678899999999874422211 122222211111 01249999999999764
No 130
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.45 E-value=2e-12 Score=102.53 Aligned_cols=117 Identities=16% Similarity=0.133 Sum_probs=69.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
+|+++|++|+|||||+|++++........ .............+ .+ ..+.++||||...+. ....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~-----------~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVTV-DDKLVTLQIWDTAGQERFQ-----------SLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcC--CccceEEEEEEEEE-CCEEEEEEEEeCCChHHHH-----------hHHH
Confidence 79999999999999999999876422211 11111111222333 23 346799999964321 1122
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc--cccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~--~~~~~~iil~nk~D~~~ 151 (285)
..+..+|++++|+|+.++.+.... .+...+...+.. ....|++++.||.|...
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 346778999999999755443332 222223332221 11248999999999873
No 131
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.45 E-value=1.1e-12 Score=108.46 Aligned_cols=115 Identities=16% Similarity=0.109 Sum_probs=74.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEE--Eee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT--VLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
..+|+++|.+|+|||||++.++.... .... ..|..+.+... ... ....+.++||||...+..
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~~~f-~~~~---~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------- 77 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLTGEF-EKKY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------- 77 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCC-CCcc---CCccceeEEEEEEEECCeEEEEEEEECCCchhhhh-----------
Confidence 37999999999999999999875542 2211 12222222222 221 235789999999765321
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
....++.++|++|+|+|++++.+... ..++..+..... . .|+++|.||+|...
T Consensus 78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~ 131 (219)
T PLN03071 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-N--IPIVLCGNKVDVKN 131 (219)
T ss_pred hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEEchhhhh
Confidence 11234678899999999976655443 345555555432 3 39999999999753
No 132
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.45 E-value=2.4e-12 Score=104.85 Aligned_cols=115 Identities=15% Similarity=0.213 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.|+++|..|+|||||++.++.... .... ..+++.......+.+ ++ ..+.++||+|...+ .....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~-~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~-----------~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEAC-KSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-----------NSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcC-CCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhh-----------HHHHH
Confidence 589999999999999999986553 2211 112222222223344 33 56889999997532 12223
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.++.++|++++|+|++++-+.... .++..+....... .|+++|.||.|+..
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~ 119 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCET 119 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence 457889999999999866655553 3444454443333 38999999999753
No 133
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.45 E-value=1.1e-12 Score=108.13 Aligned_cols=115 Identities=22% Similarity=0.331 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCCcceeEEEEEEEee---------CCceEEEEeC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK---------DGQVVNVIDT 76 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------~~~~~~liDt 76 (285)
++|+++|+.++|||||+.+|+......... ...+.|......+..+. .+..++++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 379999999999999999998554211100 11244544443333341 1566899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
||+.++. . ....++..+|++++|+|+..+.+......+..+... + . |+++++||+|..
T Consensus 81 PG~~~f~-------~----~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~--~--p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFS-------S----EVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-R--V--KPVLVINKIDRL 138 (222)
T ss_pred CCccccH-------H----HHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-C--C--CEEEEEECCCcc
Confidence 9988642 1 222345677999999999878888777666665542 2 2 899999999976
No 134
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.45 E-value=1e-12 Score=103.43 Aligned_cols=115 Identities=21% Similarity=0.211 Sum_probs=69.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
+|+++|++|+|||||++++++.... ....+.. . ......... .+ ..+.++||||...+.. + ..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~-~~~~~t~-~-~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~--------~---~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV-DDYDPTI-E-DSYRKQIEI-DGEVCLLDILDTAGQEEFSA--------M---RD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-cccCCch-h-hhEEEEEEE-CCEEEEEEEEECCCcccchH--------H---HH
Confidence 7999999999999999999976632 2221111 1 111122222 23 4578999999765321 1 11
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+..+|++++|+|+.++-+... ..+...+...... ...|++++.||+|...
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLES 119 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 23566799999999975443333 2233334333221 1238999999999764
No 135
>PLN03110 Rab GTPase; Provisional
Probab=99.45 E-value=1.6e-12 Score=107.28 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|++|+|||||++.+++........ .++........+... ....+.|+||||... +.....
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~--~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-----------~~~~~~ 79 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQVEGKTVKAQIWDTAGQER-----------YRAITS 79 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 799999999999999999999876432211 111122222223331 124688999999542 112223
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+..++++++|+|+.+.-+... ..++..+........ |++++.||+|+..
T Consensus 80 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--piiiv~nK~Dl~~ 131 (216)
T PLN03110 80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNI--VIMMAGNKSDLNH 131 (216)
T ss_pred HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC--eEEEEEEChhccc
Confidence 44678899999999975544433 345555555433333 8999999999753
No 136
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.45 E-value=1.3e-12 Score=104.44 Aligned_cols=114 Identities=15% Similarity=0.090 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++... +.... +|....+. ..... ....+.++||||...+.. ..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~---~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~-----------~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYV---PTVFENYTASFEIDEQRIELSLWDTSGSPYYDN-----------VR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CCCcC---CceEEEEEEEEEECCEEEEEEEEECCCchhhhh-----------cc
Confidence 5899999999999999999997653 32221 22222221 22231 124588999999653321 12
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+++++|++++|+|++++-|-.. ..|+..+....+ . .|+++|.||.|+..
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~--~~iilVgnK~DL~~ 119 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-N--TKVLLVGCKTDLRT 119 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-C--CCEEEEEEChhhhc
Confidence 235788999999999986766655 356666666543 3 38999999999743
No 137
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.45 E-value=1.8e-12 Score=101.65 Aligned_cols=114 Identities=13% Similarity=0.043 Sum_probs=69.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+++|++|+|||||++.+++...... .+|....+..........+.++||||.... .......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~-----------~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----IPTVGFNVEMLQLEKHLSLTVWDVGGQEKM-----------RTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-----cCccCcceEEEEeCCceEEEEEECCCCHhH-----------HHHHHHH
Confidence 589999999999999999998764321 112222233333323567999999997531 1122234
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
+..+|++++|+|+.++.+... ...+..+..... ....|++++.||.|...
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLPG 115 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECccccc
Confidence 667899999999864432222 122222211100 01239999999999754
No 138
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.45 E-value=2e-12 Score=101.28 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=70.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+++|++|+|||||++.+....... . .+|.........+ .+..+.++||||...+ ......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--T---IPTIGFNVETVTY-KNLKFQVWDLGGQTSI-----------RPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--c---CCccCcCeEEEEE-CCEEEEEEECCCCHHH-----------HHHHHHH
Confidence 58999999999999999997655321 1 1232223334444 5678999999997532 1122344
Q ss_pred cCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+..+|++++|+|+.++.+.. ...+...+....- ...|++++.||+|....
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPGA 115 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCCC
Confidence 67899999999987442222 1222222222110 12399999999997643
No 139
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.44 E-value=1.3e-12 Score=102.98 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEE-EEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+++|.+|+|||||++.++.... ..... +|.... ...... . ...+.++||||...+.. .
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~ 65 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYD---PTIEDSYRKQVEV-DGQQCMLEILDTAGTEQFTA-----------M 65 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccC---CcchheEEEEEEE-CCEEEEEEEEECCCcccchh-----------H
Confidence 5899999999999999999985542 22111 111111 112333 3 33467999999764321 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++.++|++++|+|..++-+..+ ..++..+..... ....|++++.||.|...
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 120 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence 1224667899999999864544333 234444443321 12239999999999764
No 140
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.44 E-value=1.2e-12 Score=105.77 Aligned_cols=115 Identities=19% Similarity=0.120 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++...+.. . .+|....+. ..... ....+.++||||...+.. ..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~-~---~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~-----------l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQV-Y---EPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR-----------LR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCc-c---CCcceeeeEEEEEECCEEEEEEEEECCCChhccc-----------cc
Confidence 3799999999999999999997664221 1 122222222 12221 124689999999764321 11
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|++++++-+.... .++..+..... . .|+++|.||.|+...
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~--~piilvgNK~Dl~~~ 119 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-G--VKLVLVALKCDLREA 119 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccC
Confidence 2346788999999999766544432 35666655432 2 399999999998654
No 141
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.44 E-value=3.3e-12 Score=106.45 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=60.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+|+|++|+|||||+|.|+|...... ...+.|..+......+ .+..+.++||||+.+...........+ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~--~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA--AYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc--CCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 789999999999999999999864322 1234455555555556 678899999999875432222222222 334
Q ss_pred cCCccEEEEEEeCCC
Q 023214 101 KDGIHAVLVVFSVRS 115 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~ 115 (285)
++.+|++++|+|+.+
T Consensus 75 ~~~ad~il~V~D~t~ 89 (233)
T cd01896 75 ARTADLILMVLDATK 89 (233)
T ss_pred hccCCEEEEEecCCc
Confidence 678899999999853
No 142
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.44 E-value=2.3e-12 Score=101.38 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
+|+++|++|+|||||++.+++....+.. ..|....+ ..... .+ ..+.++||||...+. ..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----------~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH----ISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQ-----------TI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHH-----------hh
Confidence 7999999999999999999876643221 22222222 23333 23 457899999965321 11
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++..+|++++|+|++++-+-... .++..+...... ..|++++.||.|...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~ 119 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPE--GVQKILIGNKADEEQ 119 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 22346788999999999755444332 344444433222 248999999999754
No 143
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.44 E-value=1.9e-12 Score=101.82 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|.+|+|||||++.+++...... ..+. ........... .+ ..+.|+||||...+... .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~~~t--~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-----------~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-YDPT--IEDFYRKEIEV-DSSPSVLEILDTAGTEQFASM-----------R 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCc--hhheEEEEEEE-CCEEEEEEEEECCCcccccch-----------H
Confidence 6899999999999999999987654322 1111 11111222333 33 34778999997654221 1
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++.++|++++|+|..++-+-.+ ..++..+..... ....|++++.||.|...
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLES 120 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 123567899999999975544333 334444444322 12348999999999754
No 144
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.44 E-value=2.1e-12 Score=103.59 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=76.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|.+|+|||||++.+++... .... .+|....+. ..... ....+.|+||+|...+. ..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f-~~~~---~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~-----------~~ 69 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF-PENY---VPTVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------NV 69 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCcc---CCceeeeeEEEEEECCEEEEEEEEECCCchhhH-----------hh
Confidence 37999999999999999999987653 2222 122222221 22221 13458899999964321 12
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++.++|++++|+|++++-+-.. ..++..+....+ . .|+++|.||.|+..
T Consensus 70 ~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~ 123 (182)
T cd04172 70 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRT 123 (182)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhhc
Confidence 2345789999999999987766555 356666666533 3 39999999999743
No 145
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.44 E-value=1.8e-12 Score=104.51 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+++|++|+|||||++.+++.... ... ..|....+. .+... ....+.++||||...+. . .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~---~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~--------~---~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEY---VPTVFENYVTNIQGPNGKIIELALWDTAGQEEYD--------R---L 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-CCC---CCeeeeeeEEEEEecCCcEEEEEEEECCCchhHH--------H---H
Confidence 37999999999999999999977642 211 122222222 22221 12358899999965321 1 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
....+.++|++++|+|++++-+.... .++..+... ... .|++++.||.|...
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~~ 119 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLRK 119 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhhh
Confidence 22346789999999999755554443 244444432 223 39999999999764
No 146
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.44 E-value=3.1e-12 Score=102.11 Aligned_cols=113 Identities=13% Similarity=0.074 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|+.|+|||||++.+..... .. ..+|....+..... ....+.++||||...+ ......
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~-~~----~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~~-----------~~~~~~ 76 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES-VT----TIPTIGFNVETVTY-KNISFTVWDVGGQDKI-----------RPLWRH 76 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CC----cCCccccceEEEEE-CCEEEEEEECCCChhh-----------HHHHHH
Confidence 7999999999999999999963332 11 11233333334444 5678999999997532 112234
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHH-HHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQ-TLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~iil~nk~D~~~ 151 (285)
++.++|++++|+|++++-+..+ ...+..+. ..... ..|++|+.||.|...
T Consensus 77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~ 128 (175)
T smart00177 77 YYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELR--DAVILVFANKQDLPD 128 (175)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhc--CCcEEEEEeCcCccc
Confidence 4788999999999975433222 22222221 11111 238999999999754
No 147
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.43 E-value=1.1e-12 Score=104.24 Aligned_cols=112 Identities=23% Similarity=0.176 Sum_probs=71.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
|+++|+.|+|||||++.+++... +....+ +....+. .... .+ ..+.++||||...... ...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~---~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVP---TVFENYSADVEV-DGKPVELGLWDTAGQEDYDR-----------LRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CCCCCC---cEEeeeeEEEEE-CCEEEEEEEEECCCCcccch-----------hch
Confidence 58999999999999999998664 222211 2222221 2222 33 3588999999764321 112
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+.++|++++|+|++++-+.... .++..+..... . .|++++.||.|....
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~ 117 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-N--TPIILVGTKLDLRED 117 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEecChhhhhC
Confidence 346789999999999755444332 35555555433 2 399999999997653
No 148
>PLN03108 Rab family protein; Provisional
Probab=99.43 E-value=2.6e-12 Score=105.56 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+|+|++|+|||||++.+++...........+. ........+ .+ ..+.++||||...+ ....
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~--~~~~~~i~~-~~~~i~l~l~Dt~G~~~~-----------~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV--EFGARMITI-DNKPIKLQIWDTAGQESF-----------RSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccc--eEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHHH
Confidence 69999999999999999999976543221111121 111122233 23 35789999996431 1112
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...+..+|++++|+|+.++-+.... .++..+....... .|++++.||.|...
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~--~piiiv~nK~Dl~~ 125 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN--MTIMLIGNKCDLAH 125 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCcc
Confidence 2335678999999999754443332 3444444433322 38999999999764
No 149
>PRK12735 elongation factor Tu; Reviewed
Probab=99.43 E-value=2.3e-12 Score=115.69 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (285)
..+|+++|+.++|||||++.|++...-. ......+.|.........+ .+..++++||||+.+
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~--- 87 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHAD--- 87 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHH---
Confidence 3799999999999999999999631100 0011346777766555555 567899999999642
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+...+......+|++++|+|+.......+...+..+... +.+ .+++++||+|....
T Consensus 88 --------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~-gi~---~iivvvNK~Dl~~~ 143 (396)
T PRK12735 88 --------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GVP---YIVVFLNKCDMVDD 143 (396)
T ss_pred --------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---eEEEEEEecCCcch
Confidence 222333445678999999999766777777777665543 431 34567999998643
No 150
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.43 E-value=2.2e-12 Score=106.33 Aligned_cols=113 Identities=23% Similarity=0.172 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|.+|+|||||++.+++.... . . ..|....+....+ ....+.||||||...+.. + ...
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~-~-~---~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~~~--------l---~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK-D-T---VSTVGGAFYLKQW-GPYNISIWDTAGREQFHG--------L---GSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-C-C---CCccceEEEEEEe-eEEEEEEEeCCCcccchh--------h---HHH
Confidence 37999999999999999999977642 2 1 1233333333333 456789999999764321 1 122
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
++..+|++++|+|++++-+.... .++..+....... .|++||.||.|+..
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence 36789999999999866555443 3444444432333 38999999999764
No 151
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.43 E-value=2.6e-13 Score=101.15 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=65.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc--cccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFK--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
||+|+|+.|+|||||++.|++..... ......+.+.......... ....+.++|++|.......... +
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~-------~-- 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQF-------F-- 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSHH-------H--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceecccccc-------h--
Confidence 68999999999999999999877541 1111122333322222211 2334889999997543221111 1
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGD 148 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D 148 (285)
...+|++++|+|..++-+.... ..+.++...-+.....|++++.||.|
T Consensus 71 --~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 --LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp --HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred --hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 3456999999998744433331 22333333321112249999999998
No 152
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.43 E-value=4.5e-12 Score=99.53 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=69.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+++|.+|+|||||++.+..... .. . .+|....+..... ....+.++||||...+ ......+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~-~~-~---~pt~g~~~~~~~~-~~~~~~l~D~~G~~~~-----------~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEI-VT-T---IPTIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-cc-c---CCCCCcceEEEEE-CCEEEEEEECCCCHhH-----------HHHHHHH
Confidence 799999999999999999964432 22 1 1122222233344 5677999999997431 1122345
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~~ 152 (285)
+.++|++++|+|+.++-+.... ...+...+... ...|++++.||.|....
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGEA--REELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHHH--HHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 7889999999999744322221 12222222111 11389999999997543
No 153
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.43 E-value=4e-12 Score=101.46 Aligned_cols=114 Identities=23% Similarity=0.159 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+++|.+|+|||||++.+++... +... .+|....+. .... .+ ..+.|+||||...+.. .
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~---~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEY---VPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDR-----------L 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCC---CCceeeeeEEEEEE-CCEEEEEEEEECCCccchhh-----------h
Confidence 5899999999999999999997653 2222 223222222 2233 33 4578999999865321 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++.++|++++|+|++++-+.... .++..+....+ . .|++++.||.|+...
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~ 120 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-K--TPFLLVGTQIDLRDD 120 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhC
Confidence 12346788999999999766555443 35555554322 3 399999999997544
No 154
>PTZ00369 Ras-like protein; Provisional
Probab=99.43 E-value=2e-12 Score=104.54 Aligned_cols=116 Identities=24% Similarity=0.226 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|.+|+|||||++.+++...... ..+ |....+ ...... ....+.++||||..++.. + .
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~~-~~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------l---~ 70 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFIDE-YDP---TIEDSYRKQCVIDEETCLLDILDTAGQEEYSA--------M---R 70 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcC-cCC---chhhEEEEEEEECCEEEEEEEEeCCCCccchh--------h---H
Confidence 7999999999999999999997653221 111 111111 112221 134577899999875421 1 1
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++.++|++++|+|++++-+... ..++..+..... ....|++++.||.|...
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDS 124 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 223668899999999975544333 234444444322 11338999999999753
No 155
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.43 E-value=3.2e-12 Score=102.75 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe--eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++.... ......+.+ ........ ..+..+.++||||...+ ....
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~--~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----------~~~~ 69 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFN--TEKIKVSLGNSKGITFHFWDVGGQEKL-----------RPLW 69 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccc--eeEEEeeccCCCceEEEEEECCCcHhH-----------HHHH
Confidence 68999999999999999999876532 211111111 11122221 13467999999996422 1122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|+.+.-+... ..++..+..... ....|+++++||+|...
T Consensus 70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccc
Confidence 234678899999999864322222 122333333221 12249999999999764
No 156
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.43 E-value=4.1e-12 Score=102.90 Aligned_cols=114 Identities=21% Similarity=0.253 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
.+|+++|++|+|||||++.+++........ ..|....+ ..... .+ ..+.++||||...+.. +
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~---~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~--------~-- 66 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPY---QNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEA--------M-- 66 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCc---ccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhh--------h--
Confidence 379999999999999999999765322111 12222222 12333 33 3466999999754311 1
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
....+.++|++++|+|+++.-+... ..++..+... ... .|+++|.||+|...
T Consensus 67 -~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~--~piilv~nK~Dl~~ 119 (193)
T cd04118 67 -SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-EEH--CKIYLCGTKSDLIE 119 (193)
T ss_pred -hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-CCC--CCEEEEEEcccccc
Confidence 1223668899999999975533332 2345544443 222 38999999999754
No 157
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.43 E-value=3.5e-12 Score=119.16 Aligned_cols=116 Identities=22% Similarity=0.377 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc-cccc-------------cCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRA-FKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (285)
++|+++|+.++|||||++.|+.... +... ....+.|+......+.| .+..++||||||+.++.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~-- 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFG-- 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHH--
Confidence 5899999999999999999985321 1110 01246788887788888 78999999999987642
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++.. ++..+|++++|+|+........+.++..+... + . |+++++||+|....
T Consensus 79 -----~ev~~----~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~--i--p~IVviNKiD~~~a 131 (594)
T TIGR01394 79 -----GEVER----VLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-G--L--KPIVVINKIDRPSA 131 (594)
T ss_pred -----HHHHH----HHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-C--C--CEEEEEECCCCCCc
Confidence 22222 34567999999999767777777777777653 3 2 78999999997643
No 158
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.43 E-value=2.9e-12 Score=103.36 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|..|+|||||+..+.+... ..... ..++.......+.. ++ ..+.++||||...+ ....
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~-~~~~~-~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~-----------~~l~ 72 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGST-ESPYG-YNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRF-----------CTIF 72 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCC-CcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHHH
Confidence 7999999999999999999987542 22111 11222222222333 33 45889999997532 1122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++.++|++++|+|++++.+... ..++..+.... +. .|++||.||.|+..
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~~--~piilVGNK~DL~~ 124 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PG--VPKILVGNRLHLAF 124 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CC--CCEEEEEECccchh
Confidence 344678999999999986766555 34566665543 23 39999999999753
No 159
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.42 E-value=4.3e-12 Score=100.54 Aligned_cols=119 Identities=17% Similarity=0.057 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|++|+|||||++.+++......... .............. ....+.++||||...+ .....
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----------~~~~~ 72 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLEVDGHFVTLQIWDTAGQERF-----------RSLRT 72 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCC--ceeeEEEEEEEEECCeEEEEEEEeCCChHHH-----------HHhHH
Confidence 7999999999999999999997654322111 11111112223331 1245788999995421 12223
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc--cccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~--~~~~~~iil~nk~D~~~ 151 (285)
.++..+|++++|++++++-+.... .+...+...... ....|++++.||.|...
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (170)
T cd04116 73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE 128 (170)
T ss_pred HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence 346788999999998755433332 233333332211 12348999999999763
No 160
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.42 E-value=3.8e-12 Score=101.28 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+++|..|+|||||++.+++...+ ... .+|....+. .... .+ ..+.|+||||...+. ..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~-~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~l 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP-DYH---DPTIEDAYKQQARI-DNEPALLDILDTAGQAEFT-----------AM 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCc---CCcccceEEEEEEE-CCEEEEEEEEeCCCchhhH-----------HH
Confidence 68999999999999999999876532 211 112211111 2233 33 458899999975431 12
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++.++|++++|+|++++.+..... ++..+..... ....|+++|.||.|...
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLES 121 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhh
Confidence 223467889999999998776666543 3344444321 12249999999999754
No 161
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.42 E-value=2.1e-12 Score=107.42 Aligned_cols=128 Identities=20% Similarity=0.210 Sum_probs=88.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE-FVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~~~ 97 (285)
..+|++||.+++|||||.|.+.|..+++. +....|+.+....+...+...+.++||||+.....-.. .....+....
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~v--S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAV--SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccc--cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 47999999999999999999999998543 44555666666666665778899999999986533211 1122222333
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+...+|.+++|+|+.+.-....-..+..+..... .|.++++||.|....
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQ 200 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcchh
Confidence 455677899999999864333333455555555422 289999999998754
No 162
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.42 E-value=4.4e-12 Score=99.09 Aligned_cols=115 Identities=20% Similarity=0.188 Sum_probs=70.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
+|+++|+.|+|||||++.+++.. +.....+... ......... . ...+.++|+||.... .....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~--~~~~~~~~~-~~~~~~~~l~D~~g~~~~-----------~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIE--DSYRKTIVV-DGETYTLDILDTAGQEEF-----------SAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChh--HeEEEEEEE-CCEEEEEEEEECCChHHH-----------HHHHH
Confidence 58999999999999999999776 3332222111 111222223 2 345889999996531 11122
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+...|++++|+|+.++-+..+ ..++..+..... ....|++++.||.|...
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccc
Confidence 33556799999999864433333 334444444433 12349999999999875
No 163
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.42 E-value=4.2e-12 Score=103.33 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEee------CCceEEEEeCCCCCCCCCCcHHHHHH
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK------DGQVVNVIDTPGLFDFSAGSEFVGKE 92 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~------~~~~~~liDtpG~~~~~~~~~~~~~~ 92 (285)
+|+++|.+|+|||||++.+++...... . ..|+.+.+ ....+. ....+.|+||+|...+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~-~---~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~---------- 67 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGR-P---SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV---------- 67 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC-C---CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH----------
Confidence 799999999999999999998764322 1 12222211 122221 1235889999997532
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC-----------------ccccCeEEEEEeCCCCCC
Q 023214 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFG-----------------KKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~-----------------~~~~~~~iil~nk~D~~~ 151 (285)
......++.++|++++|+|++++-|.... .|+..+....+ .....|++||.||.|+..
T Consensus 68 -~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 68 -KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred -HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 12223457889999999999867665543 45555544210 112349999999999754
No 164
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.42 E-value=4.2e-12 Score=104.41 Aligned_cols=118 Identities=19% Similarity=0.128 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++...... ...++........+....+ ..+.++||||...+ ....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~-----------~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF-----------RSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH-----------HHHH
Confidence 6999999999999999999997664222 1111111211222222122 45889999996432 1112
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|++++-+... ..++..+...... ...+++|+.||.|...
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLES 123 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccc
Confidence 234678899999999975544333 2344444443322 2237888999999764
No 165
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.42 E-value=4.1e-12 Score=120.29 Aligned_cols=115 Identities=16% Similarity=0.255 Sum_probs=81.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
++|+|+|+.++|||||+++|++...... ...+.|.....+...+. .+..++||||||+.++ ...
T Consensus 245 p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F-----------~~m 311 (742)
T CHL00189 245 PIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF-----------SSM 311 (742)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHHHH-----------HHH
Confidence 7999999999999999999997654322 12345555444544442 2478999999997532 112
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
....+..+|++++|+++.++........+..+... + . |+++++||+|....
T Consensus 312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~-~--i--PiIVViNKiDl~~~ 362 (742)
T CHL00189 312 RSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA-N--V--PIIVAINKIDKANA 362 (742)
T ss_pred HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc-C--c--eEEEEEECCCcccc
Confidence 22335677999999999777777777666665432 2 2 89999999998754
No 166
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.42 E-value=3.8e-12 Score=101.22 Aligned_cols=114 Identities=19% Similarity=0.125 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+++|++|+|||||++.+++...... ..+ |....+ ..... .+ ..+.++||||...+....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~-~~~---t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~---------- 65 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE-YVP---TVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLR---------- 65 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCC---ceeeeeEEEEEE-CCEEEEEEEEeCCCcccccccc----------
Confidence 3799999999999999999997664222 111 211111 12223 33 347799999987543211
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+..+|++++|++..++-+.... .++..+... ... .|++++.||+|....
T Consensus 66 -~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~--~piivv~nK~Dl~~~ 119 (174)
T cd04135 66 -PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN--VPYLLVGTQIDLRDD 119 (174)
T ss_pred -cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCC--CCEEEEeEchhhhcC
Confidence 1346788999999998755443332 345555443 233 389999999997543
No 167
>PLN03118 Rab family protein; Provisional
Probab=99.42 E-value=2.2e-12 Score=106.08 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|++|+|||||++.+++... .. .. ................ ...+.|+||||...+.. + ..
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~-~~-~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~--------~---~~ 80 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV-ED-LA-PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT--------L---TS 80 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC-CC-cC-CCceeEEEEEEEEECCEEEEEEEEECCCchhhHH--------H---HH
Confidence 7999999999999999999998653 11 11 1111222222233311 24689999999764311 1 12
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHH--HHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEA--ALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|++++-+..... +...+.. +......|+++|.||.|....
T Consensus 81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~ 135 (211)
T PLN03118 81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESE 135 (211)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECcccccc
Confidence 3366789999999997554444332 2222322 222222378999999997643
No 168
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.42 E-value=4.7e-12 Score=104.68 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeEEEEEEEeeCCceE
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKDGQVV 71 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 71 (285)
+|+++|+.|+|||||+..|+....... .....+.|.........+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 589999999999999999863321100 011246777777777777 78899
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccCeEEEEE
Q 023214 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (285)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~iil~ 144 (285)
+++||||+.++ ...+ ......+|++++|+|+.+. ........+..+. .++. +|+++++
T Consensus 80 ~liDtpG~~~~-------~~~~----~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv 144 (219)
T cd01883 80 TILDAPGHRDF-------VPNM----ITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV 144 (219)
T ss_pred EEEECCChHHH-------HHHH----HHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 99999997432 1112 2234568999999999752 2333444444443 2342 2899999
Q ss_pred eCCCCCC
Q 023214 145 TGGDELE 151 (285)
Q Consensus 145 nk~D~~~ 151 (285)
||+|...
T Consensus 145 NK~Dl~~ 151 (219)
T cd01883 145 NKMDDVT 151 (219)
T ss_pred Ecccccc
Confidence 9999873
No 169
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.42 E-value=2.2e-12 Score=104.37 Aligned_cols=116 Identities=20% Similarity=0.240 Sum_probs=70.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
+|+++|.+|+|||||++.+++... .....+ ...... ...... .+. .+.++||||...+. ....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f-~~~~~~-t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF-VETYDP-TIEDSY-RKQVVV-DGQPCMLEVLDTAGQEEYT-----------ALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CccCCC-chHhhE-EEEEEE-CCEEEEEEEEECCCchhhH-----------HHHH
Confidence 589999999999999999986543 221111 111111 112223 333 47899999965321 1122
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~iil~nk~D~~~ 151 (285)
.++.++|++++|+|+++.-+... ..++..+...... ....|++++.||+|...
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 34677899999999975544433 3445555544321 12348999999999754
No 170
>COG2262 HflX GTPases [General function prediction only]
Probab=99.41 E-value=5.8e-12 Score=109.27 Aligned_cols=128 Identities=25% Similarity=0.199 Sum_probs=87.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..+.|+++|-+++|||||+|.|+|...+..+. ...|-.+....+.+.++..+.+-||.||.+. -+..+..-+..-+
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~--LFATLdpttR~~~l~~g~~vlLtDTVGFI~~--LP~~LV~AFksTL 266 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQ--LFATLDPTTRRIELGDGRKVLLTDTVGFIRD--LPHPLVEAFKSTL 266 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeecccc--ccccccCceeEEEeCCCceEEEecCccCccc--CChHHHHHHHHHH
Confidence 34899999999999999999999988764432 2334444456666656889999999999852 3444444444443
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.. ...+|.++.|+|++++.-... ......+.++-... .|+|+++||+|.+.+
T Consensus 267 EE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~ 319 (411)
T COG2262 267 EE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED 319 (411)
T ss_pred HH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc
Confidence 32 246899999999986633332 23344444431122 499999999998876
No 171
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.41 E-value=3.5e-12 Score=105.62 Aligned_cols=117 Identities=21% Similarity=0.133 Sum_probs=69.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
+|+++|++|+|||||++.+++.........+.+. .......+.+. ....+.++||||... . +.. .
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~-~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~----~~~---~ 67 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD-DDTYERTVSVDGEESTLVVIDHWEQEM------W----TED---S 67 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc-ccceEEEEEECCEEEEEEEEeCCCcch------H----HHh---H
Confidence 7999999999999999999765432111111111 01111222221 245689999999761 0 111 1
Q ss_pred ccC-CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKD-GIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~-~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++. ++|++++|+|++++-+... ..++..+... ......|+++|.||.|....
T Consensus 68 ~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 68 CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLARS 121 (221)
T ss_pred HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhcccc
Confidence 234 7899999999975544332 2344444443 21123499999999997643
No 172
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.41 E-value=4e-12 Score=104.91 Aligned_cols=114 Identities=17% Similarity=0.091 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+|||.+|+|||||++.+++... +....+ |+...+. .+... ....+.||||+|...+. ...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~p---Ti~~~~~~~~~~~~~~v~L~iwDt~G~e~~~-----------~l~ 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVP---TVFENYTASFEIDKRRIELNMWDTSGSSYYD-----------NVR 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCccCC---ccccceEEEEEECCEEEEEEEEeCCCcHHHH-----------HHh
Confidence 5899999999999999999997653 322222 2221221 22231 13458899999965321 122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+++++|++++|+|++++-+-... .+...+... .+.. |++||.||.|+..
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~-~~~~--piiLVgnK~DL~~ 119 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF-CPNA--KVVLVGCKLDMRT 119 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCC--CEEEEEECccccc
Confidence 2458899999999999766444432 233333333 2333 9999999999754
No 173
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.41 E-value=1.9e-12 Score=102.13 Aligned_cols=117 Identities=19% Similarity=0.224 Sum_probs=68.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
+|+++|++|+|||||++.+++... .....+...+.. ...... .+ ..+.++||||....... . ..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~--~~~~~~-~~~~~~~~i~D~~g~~~~~~~------~----~~ 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLY--SRQVTI-DGEQVSLEILDTAGQQQADTE------Q----LE 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhc--eEEEEE-CCEEEEEEEEECCCCcccccc------h----HH
Confidence 589999999999999999886442 221111111111 122223 33 34789999998741110 0 11
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.++..+|++++|+|++++-+... ..++..+..........|+++|.||+|...
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 22456799999999975544433 234444544321011238999999999653
No 174
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.41 E-value=1e-11 Score=116.63 Aligned_cols=117 Identities=22% Similarity=0.310 Sum_probs=84.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.|+++|+.++|||||+++|+|...-.. .....+.|+...+.......+..+++|||||+.+ +......
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence 689999999999999999998542111 1123477877776665554567899999999742 2222333
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+.++|++++|+|+++.+.+.++..+..+... +.+ ++++++||+|....
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-gi~---~iIVVlNKiDlv~~ 119 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQLT-GNP---MLTVALTKADRVDE 119 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEECCccCCH
Confidence 45678999999999878888888887766543 432 56899999998754
No 175
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.41 E-value=5.4e-12 Score=120.98 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||+|.|+|.....+ ...++|+........+ .+..+.++||||..+...... ...+.+....
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vg--n~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 6899999999999999999999875322 2367787776666666 678899999999987643211 1222222222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.....+|++++|+|+++ +.. ....+..+.+. + .|+++++||+|....
T Consensus 81 -l~~~~aD~vI~VvDat~-ler-~l~l~~ql~e~-g----iPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 81 -ILSGDADLLINVVDASN-LER-NLYLTLQLLEL-G----IPCIVALNMLDIAEK 127 (772)
T ss_pred -HhccCCCEEEEEecCCc-chh-hHHHHHHHHHc-C----CCEEEEEEchhhhhc
Confidence 12357899999999963 322 22333333332 3 299999999998643
No 176
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.41 E-value=1.2e-11 Score=115.73 Aligned_cols=115 Identities=22% Similarity=0.288 Sum_probs=83.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcc--cccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRA--FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
+|+++|+.++|||||++.|+|... ++. ....++|..+.+....+ .+..+++|||||+.+ +...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~e-E~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~-----------f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPE-EKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEK-----------FISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChh-HhcCCceEEeEEEEEEe-CCEEEEEEECCCHHH-----------HHHHHH
Confidence 689999999999999999998542 111 12346777777776766 568899999999642 222233
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+.++|++++|+|+.++..+.....+..+.. ++-+ ++++++||+|....
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi~---~iIVVlNK~Dlv~~ 118 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGIP---HTIVVITKADRVNE 118 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCCCCCH
Confidence 44567899999999987777777777665544 3432 59999999998754
No 177
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.41 E-value=5.6e-12 Score=99.80 Aligned_cols=118 Identities=20% Similarity=0.164 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|.+|+|||||++.+++.... ....+..... ......+. ....+.++||||...+... ..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI-ESYDPTIEDS--YRKQVEIDGRQCDLEILDTAGTEQFTAM-----------RE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcchhe--EEEEEEECCEEEEEEEEeCCCcccchhh-----------hH
Confidence 68999999999999999999976632 2111111111 11222231 1246789999998754321 11
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+.+++++++|++..++-+... ..+...+..... ....|++++.||.|....
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDD 121 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhcccc
Confidence 23567799999999875433333 233444444332 123489999999997643
No 178
>PRK00049 elongation factor Tu; Reviewed
Probab=99.40 E-value=5e-12 Score=113.40 Aligned_cols=116 Identities=18% Similarity=0.201 Sum_probs=82.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (285)
..+|+++|+.++|||||++.|++...... .....+.|.........+ .+..++++||||+.+
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~--- 87 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHAD--- 87 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHH---
Confidence 37999999999999999999997421100 001346677766555554 577899999999642
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEE-EEEeCCCCCC
Q 023214 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI-VVFTGGDELE 151 (285)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i-il~nk~D~~~ 151 (285)
+..........+|++++|+|+.......++..+.++... +. |.+ +++||+|...
T Consensus 88 --------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~ 142 (396)
T PRK00049 88 --------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVD 142 (396)
T ss_pred --------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcc
Confidence 222333445678999999999777888888888777654 43 554 6899999874
No 179
>PRK00007 elongation factor G; Reviewed
Probab=99.40 E-value=4.4e-12 Score=121.30 Aligned_cols=118 Identities=20% Similarity=0.269 Sum_probs=87.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh---CCccccccc-------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 18 GERTVVLVGRTGNGKSATGNSIL---GRRAFKSRA-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
..++|+|+|+.++|||||++.|+ |........ ...+.|.........| .+..++++||||+.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~ 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGHVD 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCcHH
Confidence 45799999999999999999997 322111000 1346777777777888 788999999999764
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+ ..++. .++..+|++++|+|+...+...+...+..+... +. |.++++||+|....
T Consensus 88 f-------~~ev~----~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~~----p~iv~vNK~D~~~~ 142 (693)
T PRK00007 88 F-------TIEVE----RSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-KV----PRIAFVNKMDRTGA 142 (693)
T ss_pred H-------HHHHH----HHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 3 12233 334556999999999878899888888877764 32 78899999998865
No 180
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.40 E-value=6.3e-12 Score=100.85 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|..|+|||||++.+...... . . .+|....+..... .+..+.++||||... +......
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~-~-~---~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~~~ 80 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIV-T-T---IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 80 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCc-c-c---cCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHHHHH
Confidence 79999999999999999999854422 1 1 2233333334444 577899999999642 1122334
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~~ 152 (285)
++.++|++++|+|++++-+-.+ ....+...+... ...|++|+.||.|....
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 4788999999999974433222 122333332211 12389999999997644
No 181
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.40 E-value=5.1e-12 Score=104.85 Aligned_cols=114 Identities=14% Similarity=0.079 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|++||..|+|||||++.+++... +.... +|+...+. .+... ....+.||||+|...+. ...
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~---pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~-----------~~~ 78 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCY-PETYV---PTVFENYTAGLETEEQRVELSLWDTSGSPYYD-----------NVR 78 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCC-CCCcC---CceeeeeEEEEEECCEEEEEEEEeCCCchhhH-----------HHH
Confidence 6999999999999999999987653 22221 22222221 12221 13558999999965321 122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++.++|++++|+|++++-+... ..|+..+....+ .. |+++|.||.|+..
T Consensus 79 ~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~--piilVgNK~DL~~ 131 (232)
T cd04174 79 PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-ST--RILLIGCKTDLRT 131 (232)
T ss_pred HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CC--CEEEEEECccccc
Confidence 345789999999999986666554 356666666533 33 8999999999643
No 182
>PRK12736 elongation factor Tu; Reviewed
Probab=99.40 E-value=7.2e-12 Score=112.35 Aligned_cols=118 Identities=15% Similarity=0.229 Sum_probs=82.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (285)
..+|+++|+.++|||||++.|++...... .....+.|.......... .+..++++||||+.++
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~f-- 88 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHADY-- 88 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHHH--
Confidence 37999999999999999999997421100 001346777765555544 5678999999996421
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.. ........+|++++|+|+.......+...+.++... +.+ ++++++||+|....
T Consensus 89 -----~~----~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~~---~~IvviNK~D~~~~ 143 (394)
T PRK12736 89 -----VK----NMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GVP---YLVVFLNKVDLVDD 143 (394)
T ss_pred -----HH----HHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---EEEEEEEecCCcch
Confidence 12 222334577999999999877888888888777654 432 47788999998643
No 183
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.40 E-value=3.6e-12 Score=101.40 Aligned_cols=115 Identities=22% Similarity=0.153 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|+.|+|||||++.+++... .....+.. .......... .+ ..+.++||||...+... .
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~--~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTEYVPTA--FDNFSVVVLV-DGKPVRLQLCDTAGQDEFDKL-----------R 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCce--eeeeeEEEEE-CCEEEEEEEEECCCChhhccc-----------c
Confidence 3789999999999999999987553 23222211 1111112222 22 45789999998543211 1
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++.++|++++|+|+.++-+... ..++..+..... . .|++++.||.|....
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~ 119 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-K--APIILVGTQADLRTD 119 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhhccC
Confidence 234678999999999975544433 245555554322 2 389999999997643
No 184
>PRK12739 elongation factor G; Reviewed
Probab=99.40 E-value=3.6e-12 Score=122.00 Aligned_cols=118 Identities=23% Similarity=0.319 Sum_probs=87.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccc--c-c-------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--R-A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~--~-~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
..++|+++|+.++|||||++.|+....... + . ...+.|.........+ .+..++++||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~ 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHVD 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHHH
Confidence 347999999999999999999975321100 0 0 1346788877788888 789999999999754
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+ ..+ +..++..+|++++|+|+...+...+...+..+... +. |.++++||+|....
T Consensus 86 f-------~~e----~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~~----p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 F-------TIE----VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-GV----PRIVFVNKMDRIGA 140 (691)
T ss_pred H-------HHH----HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 2 122 23334566999999999878888888887776653 32 78999999998864
No 185
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.40 E-value=8e-12 Score=100.36 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||++.+..... .. . .+|....+..... .+..+.++||||... +......
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~-~~-~---~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~ 80 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEV-VT-T---IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLWRH 80 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-cc-c---CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHH
Confidence 7999999999999999999964432 11 1 1233333334444 567899999999642 1122334
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~ 151 (285)
++.++|++++|+|++++-+-.+ ....+...+... ...|++|+.||.|...
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 5788999999999964422222 112222222211 1238999999999754
No 186
>PLN03127 Elongation factor Tu; Provisional
Probab=99.40 E-value=5.3e-12 Score=114.46 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc----------cc----ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAF----------KS----RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~----------~~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (285)
..+|+++|+.++|||||++.|++.... .. .....+.|.........+ .+..++++||||+.++
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~f-- 137 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHADY-- 137 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccch--
Confidence 478999999999999999999743110 00 011257777776666665 5778999999998642
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+.. ....+|++++|+|+.....+.++..+..+... +.+ .+++++||+|....
T Consensus 138 -----~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gip---~iIvviNKiDlv~~ 192 (447)
T PLN03127 138 -----VKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GVP---SLVVFLNKVDVVDD 192 (447)
T ss_pred -----HHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---eEEEEEEeeccCCH
Confidence 122222 22358999999999777888888888777654 431 36788999998753
No 187
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.40 E-value=2.7e-12 Score=104.52 Aligned_cols=115 Identities=22% Similarity=0.265 Sum_probs=71.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
+|+++|++|+|||||++.+++.... ....+... ........+ .+ ..+.++||||...+.. + ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~--~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~--------~---~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVE--EMHRKEYEV-GGVSLTLDILDTSGSYSFPA--------M---RK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchh--hheeEEEEE-CCEEEEEEEEECCCchhhhH--------H---HH
Confidence 5899999999999999999976642 22211111 111223333 33 4688999999764311 1 12
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.++..+|++++|+|+.+..+.... .++..+..... ....|++++.||+|...
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE 118 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence 246788999999998754443332 23333444322 12349999999999765
No 188
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.39 E-value=2.2e-12 Score=101.18 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||+|.|+|..... ..+ ....+ ... .+|||||+... .....+.+. .
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~-----~~v~~-~~~--~~iDtpG~~~~---~~~~~~~~~----~ 60 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKT-----QAVEF-NDK--GDIDTPGEYFS---HPRWYHALI----T 60 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCccC------ccc-----eEEEE-CCC--CcccCCccccC---CHHHHHHHH----H
Confidence 479999999999999999999865321 112 22223 222 26999998643 122222222 2
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+.++|++++|+|++...+.... .+... +.. .|+++++||.|....
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~~--~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA----GLLDI-GVS--KRQIAVISKTDMPDA 106 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH----HHHhc-cCC--CCeEEEEEccccCcc
Confidence 35788999999999745433221 12221 212 289999999997543
No 189
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.39 E-value=6.1e-12 Score=120.43 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=87.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccc---c-------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
..++|+|+|+.++|||||+|.|++....... . ...+.|.........+ .+..++++||||+.+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGHVD 87 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCCcc
Confidence 4579999999999999999999743321100 0 1246788888888888 788999999999986
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+.. .. ..++..+|++++|+|+.+.....+...+..+... + .|+++++||+|....
T Consensus 88 ~~~-------~~----~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 88 FTV-------EV----ERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-E----VPRIAFVNKMDKTGA 142 (689)
T ss_pred hhH-------HH----HHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 421 12 2334566999999999877888777777766543 3 288999999998764
No 190
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.39 E-value=2e-12 Score=99.42 Aligned_cols=101 Identities=20% Similarity=0.245 Sum_probs=64.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+++|++|+|||||+|.+++.... ...|.. ..+ .+ .++||||... ..... +. .+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~-----~~~-~~---~~iDt~G~~~---~~~~~---~~-~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA-----VEY-ND---GAIDTPGEYV---ENRRL---YS-ALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------ccccee-----EEE-cC---eeecCchhhh---hhHHH---HH-HHHHH
Confidence 7999999999999999999987531 111221 222 12 6899999731 11111 22 22234
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
+.++|++++|+|+.++.+.....++. .++ . |+++++||+|...
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~-~---p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFV-K---PVIGLVTKIDLAE 102 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hcc-C---CeEEEEEeeccCC
Confidence 78899999999997666544433222 222 2 8999999999764
No 191
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.39 E-value=6.6e-12 Score=99.92 Aligned_cols=114 Identities=20% Similarity=0.164 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+++|++|+|||||++.+++.... ....+ |....+ ..... .+ ..+.++||||...... .
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVP---TVFENYVADIEV-DGKQVELALWDTAGQEDYDR-----------L 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCC---ccccceEEEEEE-CCEEEEEEEEeCCCchhhhh-----------c
Confidence 58999999999999999999976532 21211 111111 22233 22 3578999999754321 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
....+..+|++++|++++++-+... ..++..+..... . .|++++.||.|....
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~ 120 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRND 120 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhcccC
Confidence 1124678899999999874433222 234444444322 2 399999999997644
No 192
>PRK10218 GTP-binding protein; Provisional
Probab=99.39 E-value=6.3e-12 Score=117.41 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=85.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc-cccc-------------cCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (285)
..+|+++|+.++|||||++.|++... +... ....+.|.......+.+ .+..+++|||||+.++..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFGG 83 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhHH
Confidence 37999999999999999999996322 1111 11246677777777777 788999999999887532
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.. ..++..+|++++|+|+.++.....+..+..+... +- |.++++||+|....
T Consensus 84 -------~v----~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-gi----p~IVviNKiD~~~a 135 (607)
T PRK10218 84 -------EV----ERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-GL----KPIVVINKVDRPGA 135 (607)
T ss_pred -------HH----HHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-CC----CEEEEEECcCCCCC
Confidence 11 2235678999999999767777777777766543 32 78999999997643
No 193
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.38 E-value=5.5e-12 Score=100.56 Aligned_cols=113 Identities=20% Similarity=0.135 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+++|.+|+|||||+..+++... .....+ |....+ ..... .+ ..+.++||||...+.. .
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~ 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIP---TVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR-----------L 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCC---cceeeeEEEEEE-CCEEEEEEEEECCCchhhhh-----------h
Confidence 5899999999999999999986543 222211 211111 11222 23 4588999999754321 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++.++|++++|+|++++-+.... .++..+.... +. .|+++|.||.|+..
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~--~piilvgnK~Dl~~ 119 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PN--TPIILVGTKLDLRD 119 (174)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEeeChhhcc
Confidence 12346789999999999765554443 3555555432 22 39999999999753
No 194
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.38 E-value=4e-12 Score=104.69 Aligned_cols=115 Identities=22% Similarity=0.302 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccc-----------------cCCCCcceeEEEEEEEee----CCceEEEEeCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPG 78 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtpG 78 (285)
++|+++|+.|+|||||++.|++....... ....+.+.........+. ....++++||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 37999999999999999999865432110 011234443333333331 135689999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
..++. .. ...++..+|++++|+|+.+..+......+..+... + .|+++++||+|..
T Consensus 81 ~~~f~-------~~----~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFM-------DE----VAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE-G----LPIVLVINKIDRL 136 (213)
T ss_pred CcchH-------HH----HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccC
Confidence 87641 11 22334577999999999767766655555544321 2 3899999999986
No 195
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.38 E-value=8.6e-12 Score=97.93 Aligned_cols=117 Identities=19% Similarity=0.170 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|++|+|||||++.+++.... ....+. +........... ....+.++||||..++. . ...
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~---~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPT--KADSYRKKVVLDGEDVQLNILDTAGQEDYA--------A---IRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCc--chhhEEEEEEECCEEEEEEEEECCChhhhh--------H---HHH
Confidence 37999999999999999999976532 221111 111111112221 13458999999976431 1 122
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+...|++++|+++.++-+... ..++..+..... ....|+++++||+|...
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 33567799999999864332222 233344443311 12349999999999865
No 196
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.38 E-value=7.5e-12 Score=100.50 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
.+|+++|.+|+|||||++.+++... .... .+|....+ ..+.. .+ ..+.++||+|...+. .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~---~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~-----------~ 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-DEDY---IQTLGVNFMEKTISI-RGTEITFSIWDLGGQREFI-----------N 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCC---CCccceEEEEEEEEE-CCEEEEEEEEeCCCchhHH-----------H
Confidence 3799999999999999999987653 2221 12222222 22333 33 458899999965321 1
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
....++.++|++++|+|++++-+..+. .++..+....... .| ++|.||.|+.
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~ 117 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLF 117 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhcc
Confidence 223457889999999999766555443 4555554432222 25 6789999975
No 197
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.38 E-value=1.4e-11 Score=100.71 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe---eCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
++|+++|++|+|||||++.|.+.....+..+ .......... ..+..+.|+||||...+ .. .
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-----~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-------~~----~ 64 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTS-----IEPNVATFILNSEGKGKKFRLVDVPGHPKL-------RD----K 64 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCc-----EeecceEEEeecCCCCceEEEEECCCCHHH-------HH----H
Confidence 3799999999999999999997754322111 1111222222 13567999999997632 11 2
Q ss_pred HhhccCCc-cEEEEEEeCCCCCCHHHHHHHHHHHHHh----CccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGI-HAVLVVFSVRSRFSQEEEAALHSLQTLF----GKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~-~~~l~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~iil~nk~D~~~~ 152 (285)
+..++... ++++||+|+.+..+ .-.....++...+ ......|++|+.||.|....
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~~~-~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATFQK-NLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHHhccCCEEEEEEECccchh-HHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 22334555 99999999963321 1122222222211 11122399999999998754
No 198
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.38 E-value=9.4e-12 Score=99.27 Aligned_cols=114 Identities=19% Similarity=0.163 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|..|+|||||+..++... |.....+ |....+ ...... ....+.++||+|...+....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~~~~~~---Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~----------- 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIP---TVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLR----------- 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CCCCCCC---cceeeeEEEEEECCEEEEEEEEECCCCccccccc-----------
Confidence 489999999999999999999665 3322221 222111 122221 13558999999987543222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++.++|++++|+|.+++-|-... .++..+.... +. .|+++|.||.|+..
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgnK~Dl~~ 119 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-PN--VPIVLVGTKLDLRD 119 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEEeChhhcc
Confidence 2347789999999999877776653 4666666543 23 39999999999754
No 199
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.38 E-value=1e-11 Score=114.64 Aligned_cols=118 Identities=17% Similarity=0.232 Sum_probs=82.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc--cccc------------------CCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAF--KSRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~--~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG 78 (285)
..+|+|+|+.|+|||||++.|+..... ..+. ...+.+.........+ .+..++++||||
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDTPG 89 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDTPG 89 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEECCC
Confidence 379999999999999999998632211 0010 0125566666666777 788999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
+.++. .. ...++..+|++++|+|+...+.......+..+... + .|+++++||+|....+
T Consensus 90 ~~df~-------~~----~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-~----~PiivviNKiD~~~~~ 148 (527)
T TIGR00503 90 HEDFS-------ED----TYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR-D----TPIFTFMNKLDRDIRD 148 (527)
T ss_pred hhhHH-------HH----HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEECccccCCC
Confidence 86542 11 22335677999999999767777777666655432 2 2899999999986543
No 200
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.38 E-value=1.5e-12 Score=113.74 Aligned_cols=118 Identities=23% Similarity=0.238 Sum_probs=69.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
+.+|||+|.+|+|||||+|+|.|-..-..+..+.|++. ......+.++.-.++++||.||.+.+...... +...+
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~----Yl~~~ 110 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEE----YLKEV 110 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHH----HHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHH----HHHHc
Confidence 37999999999999999999988654434444444321 11223333445578999999999865443332 22222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~ 149 (285)
.+...|.|+++.+ .+++..+...+..+..+ |. ++++|-||.|.
T Consensus 111 --~~~~yD~fiii~s--~rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~ 153 (376)
T PF05049_consen 111 --KFYRYDFFIIISS--ERFTENDVQLAKEIQRM-GK----KFYFVRTKVDS 153 (376)
T ss_dssp --TGGG-SEEEEEES--SS--HHHHHHHHHHHHT-T-----EEEEEE--HHH
T ss_pred --cccccCEEEEEeC--CCCchhhHHHHHHHHHc-CC----cEEEEEecccc
Confidence 2345577766555 59999998888888876 54 89999999994
No 201
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.37 E-value=7.6e-12 Score=101.28 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=73.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+++|.+|+|||||+..++.... +... .+|....+. .... .+ ..+.++||||...+. ..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~-----------~l 67 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY---IPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEEYD-----------RL 67 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC---CCceEeeeEEEEEE-CCEEEEEEEEECCCchhhh-----------hh
Confidence 6999999999999999999986543 2211 223222221 1222 23 458899999975431 12
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++.++|++++|+|++++-+-... .++..+.... +. .|++||.||.|+..
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgNK~DL~~ 121 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PN--VPILLVGTKKDLRN 121 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEeChhhhc
Confidence 22447889999999999766555443 2444444432 23 39999999999753
No 202
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.37 E-value=1.9e-11 Score=97.00 Aligned_cols=117 Identities=14% Similarity=-0.006 Sum_probs=70.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|.+|+|||||++.+++....+....+ ............+ .+ ..+.++|++|...+....
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~-T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~---------- 71 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP-TIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLN---------- 71 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC-ccCcceEEEEEEE-CCeEEEEEEEecCCcccccccc----------
Confidence 379999999999999999999987642022211 1111122222333 33 457889999976542211
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|++++-+... ...++... ......|+++|.||.|...
T Consensus 72 -~~~~~~~d~~llv~d~~~~~s~~~--~~~~~~~~-~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 72 -DAELAACDVACLVYDSSDPKSFSY--CAEVYKKY-FMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred -hhhhhcCCEEEEEEeCCCHHHHHH--HHHHHHHh-ccCCCCeEEEEEEcccccc
Confidence 123578899999999864422221 12222222 1112349999999999754
No 203
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.37 E-value=1.4e-11 Score=110.89 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccc--------------cc-----------------CCCCcceeEEEEEEEeeCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMQRTVLKDG 68 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~~~~~ 68 (285)
.+|+++|+.++|||||++.|+....... +. ...+.|....+....+ .+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 4899999999999999999974432111 10 1236677777777777 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCC
Q 023214 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (285)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D 148 (285)
..++++||||+.++ ...+. .....+|++++|+|+...+...++..+..+... +.+ ++++++||+|
T Consensus 80 ~~~~liDtPGh~~f-------~~~~~----~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~---~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQY-------TRNMA----TGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIR---HVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHHH-------HHHHH----HHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCC---cEEEEEEecc
Confidence 88999999996532 12222 234578999999999777777776666655543 432 7889999999
Q ss_pred CCCC
Q 023214 149 ELED 152 (285)
Q Consensus 149 ~~~~ 152 (285)
....
T Consensus 145 ~~~~ 148 (406)
T TIGR02034 145 LVDY 148 (406)
T ss_pred cccc
Confidence 8753
No 204
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.36 E-value=1.1e-11 Score=102.61 Aligned_cols=116 Identities=19% Similarity=0.142 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCC-------------CCcceeEE------------------------EEEE
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASS-------------SGVTSTCE------------------------MQRT 63 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~-------------~~~t~~~~------------------------~~~~ 63 (285)
+|+++|++|+|||||++.+..... ..+... .|.|.... ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 589999999999999999985322 111100 11111000 0111
Q ss_pred EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE
Q 023214 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 143 (285)
Q Consensus 64 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil 143 (285)
.. .+..++++||||+.++ .......+.. ..+|++++|+++..+++..+...+.++... +. |++++
T Consensus 80 ~~-~~~~i~liDtpG~~~~-------~~~~~~~~~~--~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~i----p~ivv 144 (224)
T cd04165 80 EK-SSKLVTFIDLAGHERY-------LKTTLFGLTG--YAPDYAMLVVAANAGIIGMTKEHLGLALAL-NI----PVFVV 144 (224)
T ss_pred ee-CCcEEEEEECCCcHHH-------HHHHHHhhcc--cCCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEE
Confidence 22 4678999999997532 2222222211 357999999999878888888888887764 42 88999
Q ss_pred EeCCCCCCC
Q 023214 144 FTGGDELED 152 (285)
Q Consensus 144 ~nk~D~~~~ 152 (285)
+||+|....
T Consensus 145 vNK~D~~~~ 153 (224)
T cd04165 145 VTKIDLAPA 153 (224)
T ss_pred EECccccCH
Confidence 999998754
No 205
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.36 E-value=1.5e-11 Score=110.46 Aligned_cols=118 Identities=16% Similarity=0.248 Sum_probs=81.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc------cc----cc----cCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRA------FK----SR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~------~~----~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (285)
..+|+++|+.++|||||++.|++... +. .. ....+.|.......... .+..++++||||+.++
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~f-- 88 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY-- 88 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHHH--
Confidence 38999999999999999999985411 00 00 01246777765555544 5678999999997532
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+ ......+|++++|+|+.......++..+..+... +-+ ++++++||+|....
T Consensus 89 -----~~~~----~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi~---~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 89 -----VKNM----ITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GVP---YIVVFLNKCDMVDD 143 (394)
T ss_pred -----HHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEecccCCH
Confidence 1122 2233567999999999877778777777776544 432 45578999998753
No 206
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.36 E-value=9.8e-12 Score=99.47 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+|+|++|+|||||++.+++...... ..+. +........... .+..+.++||||..++. ....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVES-YYPT--IENTFSKIIRYKGQDYHLEIVDTAGQDEYS-----------ILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccc-cCcc--hhhhEEEEEEECCEEEEEEEEECCChHhhH-----------HHHH
Confidence 6899999999999999999997653221 1111 111111222221 12457899999975421 1112
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+..+|++++|+|.+++.+... ..++..+....+ ....|++++.||+|...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHT 120 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhh
Confidence 23557899999999875433332 233344443322 12348999999999764
No 207
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.36 E-value=1.4e-11 Score=112.74 Aligned_cols=120 Identities=14% Similarity=0.179 Sum_probs=82.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccc--------------cc-----------------CCCCcceeEEEEEEEe
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMQRTVL 65 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~~ 65 (285)
.+..+|+++|+.++|||||++.|+....... +. ...++|....+....+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 3458999999999999999999985543211 10 0135677777666666
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe
Q 023214 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (285)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n 145 (285)
.+..++++||||+.++ ...+ ......+|++++|+|+...+...++..+..+... +.+ ++++++|
T Consensus 105 -~~~~i~~iDTPGh~~f-------~~~~----~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~---~iIvvvN 168 (474)
T PRK05124 105 -EKRKFIIADTPGHEQY-------TRNM----ATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIK---HLVVAVN 168 (474)
T ss_pred -CCcEEEEEECCCcHHH-------HHHH----HHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCC---ceEEEEE
Confidence 6788999999996431 1222 2234678999999999767766555555544433 432 7899999
Q ss_pred CCCCCCC
Q 023214 146 GGDELED 152 (285)
Q Consensus 146 k~D~~~~ 152 (285)
|+|....
T Consensus 169 KiD~~~~ 175 (474)
T PRK05124 169 KMDLVDY 175 (474)
T ss_pred eeccccc
Confidence 9998743
No 208
>PLN03126 Elongation factor Tu; Provisional
Probab=99.36 E-value=1.6e-11 Score=111.93 Aligned_cols=118 Identities=15% Similarity=0.222 Sum_probs=84.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (285)
..+|+++|+.++|||||++.|++..... ......+.|.........+ .+..++++||||+.++
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~f-- 157 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADY-- 157 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHHH--
Confidence 4789999999999999999999632110 0112246677666666666 6788999999997532
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+ ......+|++++|+|+.....+..+..+..+... +.+ ++++++||+|....
T Consensus 158 -----~~~~----~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi~---~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 158 -----VKNM----ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GVP---NMVVFLNKQDQVDD 212 (478)
T ss_pred -----HHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEecccccCH
Confidence 2222 2334567999999999878888888777776554 432 47889999998753
No 209
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.35 E-value=1.4e-11 Score=113.65 Aligned_cols=117 Identities=15% Similarity=0.241 Sum_probs=81.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc--cccc------------------CCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAF--KSRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~--~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG 78 (285)
..+|+|+|+.|+|||||.+.|+..... ..+. ...+.+.........+ .+..++++||||
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTPG 88 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTPG 88 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECCC
Confidence 379999999999999999999731110 0000 0124555555666777 788899999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+.++. .... .++..+|++++|+|+.+++.......+..+... + .|+++++||+|....
T Consensus 89 ~~df~-------~~~~----~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-~----iPiiv~iNK~D~~~a 146 (526)
T PRK00741 89 HEDFS-------EDTY----RTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR-D----TPIFTFINKLDRDGR 146 (526)
T ss_pred chhhH-------HHHH----HHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc-C----CCEEEEEECCccccc
Confidence 87642 1122 234567999999999777777776666655442 2 289999999998764
No 210
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.35 E-value=3.8e-12 Score=97.76 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=69.5
Q ss_pred EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 24 lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
++|++|+|||||+|.|++.........+ |. ..+...... .+..+.++|+||..+... .....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~---t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYET---TI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRS-----------LRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccccc---ch-hheeeEEEEECCEEEEEEEEecCChHHHHh-----------HHHHH
Confidence 5899999999999999987753222211 21 222222221 256799999999764321 11234
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHH--HHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEEEAAL--HSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++.+|++++|+|+....+......+ ....... ....|+++++||.|....
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKE--GENIPIILVGNKIDLPEE 117 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhc--cCCCcEEEEEeccccccc
Confidence 6778999999999755444443332 1222221 223499999999998755
No 211
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=8.4e-12 Score=117.50 Aligned_cols=118 Identities=22% Similarity=0.309 Sum_probs=91.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccc--cC--------------CCCcceeEEEEEEEeeCC-ceEEEEeCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR--AS--------------SSGVTSTCEMQRTVLKDG-QVVNVIDTPGLFD 81 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~--~~--------------~~~~t~~~~~~~~~~~~~-~~~~liDtpG~~~ 81 (285)
.++|+++||..+|||||..+|+-.....+. .. ..|.|+.....+..| .+ ..+++|||||+.|
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPGHVD 88 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPGHVD 88 (697)
T ss_pred ceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCCccc
Confidence 379999999999999999998833322111 11 137888888888888 64 9999999999999
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
|.. ++.+. +.-.|+++.|+|+...+.+.....|+.+... .+ |.++++||+|....+
T Consensus 89 Ft~-------EV~rs----lrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~v--p~i~fiNKmDR~~a~ 144 (697)
T COG0480 89 FTI-------EVERS----LRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GV--PRILFVNKMDRLGAD 144 (697)
T ss_pred cHH-------HHHHH----HHhhcceEEEEECCCCeeecHHHHHHHHhhc---CC--CeEEEEECccccccC
Confidence 742 33333 4455999999999889999998888888765 33 899999999998664
No 212
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.35 E-value=1.5e-11 Score=99.22 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+|+|++|+|||||++.++...... ... .|....+. .... .+ ..+.++||||...+.....
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~--------- 67 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EYH---PTVFENYVTDCRV-DGKPVQLALWDTAGQEEYERLRP--------- 67 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccC---CcccceEEEEEEE-CCEEEEEEEEECCCChhccccch---------
Confidence 589999999999999999998544322 111 12211111 2222 22 4478999999764321111
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+..+|++++++++++.-+... ..++..+..... . .|+++|.||.|...
T Consensus 68 --~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~--~piilvgnK~Dl~~ 119 (187)
T cd04129 68 --LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-N--VPVILVGLKKDLRQ 119 (187)
T ss_pred --hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhhh
Confidence 13567899999999864433333 245666665433 2 39999999999743
No 213
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.35 E-value=3.4e-11 Score=93.30 Aligned_cols=117 Identities=23% Similarity=0.262 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.|++.. ++.... .+.+.......... .+ ..+.++||||..+... ...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~----~~~------ 68 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYK-PGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRA----IRR------ 68 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCC-CCceeeeeEEEEEE-CCEEEEEEEEECCCcccchH----HHH------
Confidence 689999999999999999999887 433222 23333333333444 45 6688999999654311 111
Q ss_pred hhccCCccEEEEEEeCCCC-CC--HHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSR-FS--QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~-~~--~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.....++.+++++|.... .+ .........+...... ..|+++++||.|....
T Consensus 69 -~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 69 -LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA 123 (161)
T ss_pred -HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc
Confidence 112334566666665322 11 1122333334433221 2389999999998764
No 214
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.34 E-value=2.6e-11 Score=110.05 Aligned_cols=117 Identities=21% Similarity=0.275 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc--------------c---------------cCCCCcceeEEEEEEEeeCCc
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMQRTVLKDGQ 69 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~~ 69 (285)
..+|+++|+.++|||||++.|+....... + ....+.|.........+ .+.
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~~~ 85 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-DKY 85 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-CCe
Confidence 37999999999999999999984321100 0 01236777777777766 678
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC---CCHHHHHHHHHHHHHhCccccCeEEEEEeC
Q 023214 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR---FSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (285)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~iil~nk 146 (285)
.++|+||||+.++ ...+...+..+|++++|+|+.++ ........+..+ ..++. .++++++||
T Consensus 86 ~i~iiDtpGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVviNK 150 (426)
T TIGR00483 86 EVTIVDCPGHRDF-----------IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVAINK 150 (426)
T ss_pred EEEEEECCCHHHH-----------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEEEEC
Confidence 8999999996431 11222335678999999999755 333333333333 33343 279999999
Q ss_pred CCCCC
Q 023214 147 GDELE 151 (285)
Q Consensus 147 ~D~~~ 151 (285)
+|...
T Consensus 151 ~Dl~~ 155 (426)
T TIGR00483 151 MDSVN 155 (426)
T ss_pred hhccC
Confidence 99864
No 215
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.33 E-value=2.7e-11 Score=115.00 Aligned_cols=119 Identities=14% Similarity=0.188 Sum_probs=82.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccc--------------cc-----------------CCCCcceeEEEEEEEe
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMQRTVL 65 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~~ 65 (285)
.+..+|+++|+.++|||||++.|+....... +. ...+.|....+....+
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 3447999999999999999999996543211 10 0135666666666766
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe
Q 023214 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (285)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n 145 (285)
.+..++|+||||+.++ ...+. .....+|++++|+|+...+...+...+..+... +.+ ++++++|
T Consensus 102 -~~~~~~liDtPG~~~f-------~~~~~----~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~---~iivvvN 165 (632)
T PRK05506 102 -PKRKFIVADTPGHEQY-------TRNMV----TGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIR---HVVLAVN 165 (632)
T ss_pred -CCceEEEEECCChHHH-------HHHHH----HHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCC---eEEEEEE
Confidence 6788999999996421 12222 234578999999999767766666555555443 433 7889999
Q ss_pred CCCCCC
Q 023214 146 GGDELE 151 (285)
Q Consensus 146 k~D~~~ 151 (285)
|+|...
T Consensus 166 K~D~~~ 171 (632)
T PRK05506 166 KMDLVD 171 (632)
T ss_pred eccccc
Confidence 999874
No 216
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=2.2e-11 Score=94.34 Aligned_cols=129 Identities=17% Similarity=0.239 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccc-----ccCCCC---cceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK 91 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 91 (285)
.+|+++|+.|+||||+++.+........ ..+..+ .|+...+.+..+..+..+++++|||+..+..
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f------- 83 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF------- 83 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHH-------
Confidence 6999999999999999999997764222 122233 7788888888884558899999999875421
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC-hhcHHHHhhh
Q 023214 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGR 163 (285)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~-~~~l~~~l~~ 163 (285)
.+.....++.++++++|.+.+.+......+..+..... .|++|..||.|+.... .+.+.+++..
T Consensus 84 ----m~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~ppe~i~e~l~~ 148 (187)
T COG2229 84 ----MWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDALPPEKIREALKL 148 (187)
T ss_pred ----HHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCCCHHHHHHHHHh
Confidence 22233667899999999876666666777777766532 3999999999987542 3567777763
No 217
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.32 E-value=2.9e-11 Score=101.61 Aligned_cols=116 Identities=19% Similarity=0.174 Sum_probs=70.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
+|+++|..|+|||||++.+++.... ....+....... ..+.. .+ ..+.|+||+|..++. .+ ..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~-~~y~pTi~d~~~--k~~~i-~~~~~~l~I~Dt~G~~~~~--------~~---~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE-EQYTPTIEDFHR--KLYSI-RGEVYQLDILDTSGNHPFP--------AM---RR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC-CCCCCChhHhEE--EEEEE-CCEEEEEEEEECCCChhhh--------HH---HH
Confidence 7999999999999999999876532 222111111111 12222 33 457899999976432 11 11
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHh-------CccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLF-------GKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~-------~~~~~~~~iil~nk~D~~~ 151 (285)
.++..+|++++|+|++++-+.... .++..+.... ......|++++.||+|...
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 235678999999999755443332 3334443321 0112349999999999864
No 218
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.32 E-value=5.5e-12 Score=100.62 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=78.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
...+|+++|+.||||||+++.|....... ..+|.......+.+ .+..++++|.+|..... ..+
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~~~-----------~~w 75 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQESFR-----------PLW 75 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGGGG-----------GGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEecccccccc-----------ccc
Confidence 44899999999999999999998654322 23344555566666 78899999999964321 133
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~~ 152 (285)
..++..+|+++||+|..+.-.-. .....+...+... ...|++|+.||.|....
T Consensus 76 ~~y~~~~~~iIfVvDssd~~~l~--e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 76 KSYFQNADGIIFVVDSSDPERLQ--EAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp GGGHTTESEEEEEEETTGGGGHH--HHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred eeeccccceeEEEEecccceeec--ccccchhhhcchhhcccceEEEEeccccccCc
Confidence 45678899999999986332211 1222333333321 13599999999997754
No 219
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.32 E-value=8.8e-12 Score=103.57 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=90.8
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC-----------CCcceeEEEEEEEeeCCce
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-----------SGVTSTCEMQRTVLKDGQV 70 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~-----------~~~t~~~~~~~~~~~~~~~ 70 (285)
++.++.+++||.++.| ..++|+||||||||||+++|+|-..+..|... ........+.++....+..
T Consensus 13 ~~~~il~~ls~~i~~G--~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 13 GGKPILDDLSFSIPKG--EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CCeeEEecceEEecCC--cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 4678899999999999 89999999999999999999998877665321 1123355566666545667
Q ss_pred EEEEeCCCCCCC------CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE-
Q 023214 71 VNVIDTPGLFDF------SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV- 143 (285)
Q Consensus 71 ~~liDtpG~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil- 143 (285)
+++.|..-++.+ ......-...+..++... +..-+....-+.+|+++++++-..+.+...+ +++++
T Consensus 91 ~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~----~~~~la~r~~~~LSGGerQrv~iArALaQ~~---~iLLLD 163 (258)
T COG1120 91 LTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELL----GLEHLADRPVDELSGGERQRVLIARALAQET---PILLLD 163 (258)
T ss_pred cEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHh----CcHHHhcCcccccChhHHHHHHHHHHHhcCC---CEEEeC
Confidence 888885443321 111111111232233222 1111121222578999999888888776655 77877
Q ss_pred --EeCCCCCCC
Q 023214 144 --FTGGDELED 152 (285)
Q Consensus 144 --~nk~D~~~~ 152 (285)
+|++|....
T Consensus 164 EPTs~LDi~~Q 174 (258)
T COG1120 164 EPTSHLDIAHQ 174 (258)
T ss_pred CCccccCHHHH
Confidence 899996543
No 220
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.32 E-value=2.4e-11 Score=113.19 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFDF 82 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtpG~~~~ 82 (285)
+.|+++|+.++|||||+|.|++...... .+.+.|.........+. ....++++||||+..+
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 6899999999999999999998764221 12233333222222110 0123889999997643
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
. ......+..+|++++|+|+.+.+...+...+..+... + . |+++++||+|...
T Consensus 83 ~-----------~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-~--v--piIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 T-----------NLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-K--T--PFVVAANKIDRIP 135 (590)
T ss_pred H-----------HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-C--C--CEEEEEECCCccc
Confidence 1 1112345678999999999877777777777666542 2 2 8999999999764
No 221
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.32 E-value=4.6e-11 Score=90.50 Aligned_cols=115 Identities=16% Similarity=0.199 Sum_probs=83.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..||.++|.++|||||+++.++|... . ...+|...+.....+ .+..++++|..|.- .++.++.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~--~---~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~-----------~lr~~W~ 78 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDT--D---TISPTLGFQIKTLEY-KGYTLNIWDVGGQK-----------TLRSYWK 78 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCc--c---ccCCccceeeEEEEe-cceEEEEEEcCCcc-----------hhHHHHH
Confidence 48999999999999999999998773 2 234577777778888 88999999998853 4566777
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC-cc-ccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG-KK-IFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~-~~-~~~~~iil~nk~D~~~~ 152 (285)
++|...|++++|+|..++..-.+- ...++..+. .. ...|++++.||.|....
T Consensus 79 nYfestdglIwvvDssD~~r~~e~--~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 79 NYFESTDGLIWVVDSSDRMRMQEC--KQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred HhhhccCeEEEEEECchHHHHHHH--HHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 889999999999998755443331 112222221 11 12389999999997743
No 222
>PLN00023 GTP-binding protein; Provisional
Probab=99.31 E-value=3.1e-11 Score=103.47 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee--------------CCceEEEEeCCCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------DGQVVNVIDTPGLFDFSAG 85 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~liDtpG~~~~~~~ 85 (285)
.+|+|+|.+|+|||||++.+++...........+.+... ..+.+. ....+.|+||+|...+.
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~i--k~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr-- 97 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGV--KHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK-- 97 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEE--EEEEECCcccccccccccCCceEEEEEEECCCChhhh--
Confidence 799999999999999999999765322111112222211 222221 12348899999975432
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc----------cccCeEEEEEeCCCCCC
Q 023214 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK----------KIFDYMIVVFTGGDELE 151 (285)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~----------~~~~~~iil~nk~D~~~ 151 (285)
.+...++.+++++|+|+|++++-+... ..++..+...... ....+++||.||+|+..
T Consensus 98 ---------sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 98 ---------DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ---------hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 233345889999999999976555443 3455556554210 01248999999999754
No 223
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.31 E-value=1.9e-11 Score=92.22 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|||.+|+|||||+-.+.....-+-.+...|+.....+..+.- ...++.||||.|...|+. ...+
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqErFRt-----------LTpS 79 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDG-KRLKLAIWDTAGQERFRT-----------LTPS 79 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcC-ceEEEEEEeccchHhhhc-----------cCHh
Confidence 7999999999999999999886553222222234443333333322 345699999999765432 3345
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
+|+++.++++|+|++.+-+.... .|+..+..... ....-.++|.||+|..+
T Consensus 80 yyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Yst-n~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 80 YYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYST-NPDIIKMLVGNKIDKES 131 (209)
T ss_pred HhccCceeEEEEEccchhhHHhHHHHHHHHHhhcC-CccHhHhhhcccccchh
Confidence 68999999999999756444333 34445544433 22223456799999763
No 224
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.31 E-value=4.6e-11 Score=108.50 Aligned_cols=116 Identities=21% Similarity=0.236 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeEEEEEEEeeCCc
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKDGQ 69 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~ 69 (285)
..+|+++|+.++|||||+..|+....... .....+.|....+....+ .+.
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~~ 85 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKY 85 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CCe
Confidence 37899999999999999998874221100 001246777777777777 788
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCccccCeEEE
Q 023214 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYMIV 142 (285)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~ii 142 (285)
.++|+||||+.++ ...+ ......+|++++|+|+.... .+..+..+..+..+ |-+ ++|+
T Consensus 86 ~i~lIDtPGh~~f-------~~~~----~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi~---~iiv 150 (446)
T PTZ00141 86 YFTIIDAPGHRDF-------IKNM----ITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GVK---QMIV 150 (446)
T ss_pred EEEEEECCChHHH-------HHHH----HHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CCC---eEEE
Confidence 9999999996542 2222 23345779999999996554 35666666665553 543 6789
Q ss_pred EEeCCCCC
Q 023214 143 VFTGGDEL 150 (285)
Q Consensus 143 l~nk~D~~ 150 (285)
++||+|..
T Consensus 151 ~vNKmD~~ 158 (446)
T PTZ00141 151 CINKMDDK 158 (446)
T ss_pred EEEccccc
Confidence 99999953
No 225
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.6e-11 Score=97.02 Aligned_cols=116 Identities=21% Similarity=0.201 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
++|+++|.+|+|||-|+..++-...-.. +..++.+......... ++ .+..||||.|... ++...
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~--SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQER-----------yrAit 80 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLE--SKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQER-----------YRAIT 80 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcc--cccceeEEEEeeceee-cCcEEEEeeecccchhh-----------hcccc
Confidence 7899999999999999999885553222 2222333333444444 33 4578999999653 33455
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
+.+|+++.+.++|+|++.+.+-.. ..||..++....+.+ ++++|.||.|+..
T Consensus 81 SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~ 133 (222)
T KOG0087|consen 81 SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNH 133 (222)
T ss_pred chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhh
Confidence 677999999999999976766554 467777777655544 8888899999764
No 226
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.29 E-value=4.1e-11 Score=110.15 Aligned_cols=120 Identities=23% Similarity=0.306 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|.+++|||||+|.|+|.....+ ...|+|+........+ .+..+.++|.||..+...-.. .+.+.+-+..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~Vg--NwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~--DE~Var~~ll 78 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVG--NWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSE--DEKVARDFLL 78 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceec--CCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCc--hHHHHHHHHh
Confidence 5799999999999999999999987443 4578999988888888 788899999999987543221 2233332222
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
-..+|+++-|+|++ .+...-.-.++++.. |. |+++++|.+|....
T Consensus 79 -~~~~D~ivnVvDAt-nLeRnLyltlQLlE~--g~----p~ilaLNm~D~A~~ 123 (653)
T COG0370 79 -EGKPDLIVNVVDAT-NLERNLYLTLQLLEL--GI----PMILALNMIDEAKK 123 (653)
T ss_pred -cCCCCEEEEEcccc-hHHHHHHHHHHHHHc--CC----CeEEEeccHhhHHh
Confidence 35689999999996 433333333333221 32 89999999998755
No 227
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.29 E-value=6.4e-11 Score=111.04 Aligned_cols=117 Identities=22% Similarity=0.274 Sum_probs=79.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccc------ccc-------CCCCcceeEEEEEEEee--C--CceEEEEeCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFK------SRA-------SSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD 81 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~------~~~-------~~~~~t~~~~~~~~~~~--~--~~~~~liDtpG~~~ 81 (285)
.++|+++|+.++|||||++.|+...... ... ...++|.........|. + ...++||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4799999999999999999998643111 101 12366666555555552 2 25689999999876
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
+. .... .++..+|++++|+|+.++.+..+...+..+... .. |+++++||+|...
T Consensus 83 F~-------~~v~----~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~---~i--piIiViNKiDl~~ 136 (595)
T TIGR01393 83 FS-------YEVS----RSLAACEGALLLVDAAQGIEAQTLANVYLALEN---DL--EIIPVINKIDLPS 136 (595)
T ss_pred HH-------HHHH----HHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc---CC--CEEEEEECcCCCc
Confidence 42 2222 235567999999999877777766555444331 22 8999999999754
No 228
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.29 E-value=4.4e-11 Score=98.67 Aligned_cols=113 Identities=19% Similarity=0.159 Sum_probs=68.4
Q ss_pred eEEEEEcCCCCCHHHHHHH-HhCCcccccccCCCCcceeEEEEEEEe---eCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNS-ILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~-l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
.+|+++|++|+|||||++. +.|... .. . ..|....+....+ .....+.++||||...+. .+.
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~-~~-~---~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~--------~~~- 75 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFE-KK-Y---IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFG--------GLR- 75 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCC-CC-C---CCccceEEEEEEEEECCeEEEEEEEECCCchhhh--------hhh-
Confidence 7999999999999999965 544432 11 1 1122222222211 124568899999965431 111
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++...+++++|+|+.++.+... ..++..+..... . .|++++.||+|...
T Consensus 76 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 76 --DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-N--IPIVLVGNKVDVKD 127 (215)
T ss_pred --HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccCcc
Confidence 223557799999999975655443 234444444332 2 38889999999753
No 229
>PRK13351 elongation factor G; Reviewed
Probab=99.29 E-value=3.7e-11 Score=115.30 Aligned_cols=117 Identities=20% Similarity=0.282 Sum_probs=84.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc-------cc---------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-------RA---------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~-------~~---------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (285)
..+|+++|+.|+|||||++.|+....... +. ...+.|.........+ .+..+++|||||+.++
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~df 86 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHIDF 86 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHHH
Confidence 47999999999999999999985321100 00 0245666666777777 7889999999998653
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
. .. ...++..+|++++|+|+..+........+..+... + .|+++++||+|....
T Consensus 87 ~-------~~----~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 T-------GE----VERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-G----IPRLIFINKMDRVGA 140 (687)
T ss_pred H-------HH----HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-C----CCEEEEEECCCCCCC
Confidence 2 11 22335667999999999877777777777665443 2 289999999998764
No 230
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.29 E-value=1.9e-11 Score=96.00 Aligned_cols=116 Identities=22% Similarity=0.283 Sum_probs=73.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
+|+++|+.|+|||||++.+.+...........+. .......... ....+.++|+||...+ ..+. ..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~~~~---~~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGI--DSYSKEVSIDGKPVNLEIWDTSGQERF--------DSLR---DI 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSE--EEEEEEEEETTEEEEEEEEEETTSGGG--------HHHH---HH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccc--ccccccccccccccccccccccccccc--------cccc---cc
Confidence 6899999999999999999976632221111112 2222233331 1345899999996432 1122 22
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.+..+|++++|+|.+++-+-.. ..++..+....+... |++++.||.|...
T Consensus 68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~--~iivvg~K~D~~~ 118 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDI--PIIVVGNKSDLSD 118 (162)
T ss_dssp HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTS--EEEEEEETTTGGG
T ss_pred cccccccccccccccccccccccccccccccccccccc--cceeeeccccccc
Confidence 3677899999999975544333 355666666654223 9999999999765
No 231
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.28 E-value=3.5e-11 Score=97.90 Aligned_cols=109 Identities=18% Similarity=0.138 Sum_probs=70.2
Q ss_pred EcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEE--EEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 023214 25 VGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR--TVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (285)
Q Consensus 25 vG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (285)
+|..|+|||||++.++... +.... .+|....+.. +.+. ....+.|+||||...+. .....++
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~~~~---~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~-----------~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEKKY---VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFG-----------GLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CCCCC---CCceeEEEEEEEEEECCEEEEEEEEECCCchhhh-----------hhhHHHh
Confidence 6999999999999998544 22211 2233333322 2221 24568999999975432 1222357
Q ss_pred CCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 102 DGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.++|++++|+|++++.+.... .++..+.... .. .|+++|.||+|+..
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~--~piilvgNK~Dl~~ 113 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-EN--IPIVLCGNKVDVKD 113 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CC--CCEEEEEECccccc
Confidence 889999999999866555443 4555565543 23 39999999999753
No 232
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.28 E-value=4.1e-11 Score=100.37 Aligned_cols=124 Identities=19% Similarity=0.149 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
-.|+|||-+++|||||+|+|....+-. .....+|..+....+.+.+...++|-|.||+......+.-++..+.+.+..
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkV--a~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKV--AHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcc--cccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 578999999999999999999777522 223345666667777774556699999999987666666677777777655
Q ss_pred ccCCccEEEEEEeCCCCC--CHHH-HHH----HHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRF--SQEE-EAA----LHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~--~~~~-~~~----l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
| ..++||+|.+... ++-+ ... +++..+.+.. +|.+||.||+|..+.
T Consensus 275 ~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~---rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 275 C----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLAD---RPALIVANKIDLPEA 327 (366)
T ss_pred h----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhcc---CceEEEEeccCchhH
Confidence 5 7999999996441 3222 222 2223333333 489999999998644
No 233
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=4.2e-11 Score=94.93 Aligned_cols=117 Identities=19% Similarity=0.190 Sum_probs=82.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|.+|+|||+++-.+.....-++-.+. ..+......+.. ++ ..+.+|||.|... +...
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sT--iGIDFk~kti~l-~g~~i~lQiWDtaGQer-----------f~ti 77 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFIST--IGIDFKIKTIEL-DGKKIKLQIWDTAGQER-----------FRTI 77 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCCccce--EEEEEEEEEEEe-CCeEEEEEEEEcccchh-----------HHHH
Confidence 379999999999999999999866542222222 222333334444 33 3488999999653 3334
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
+..++++++++++|+|+.+..|-.. ..|++.+.+.-.+.+ +.++|.||+|...
T Consensus 78 ~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 78 TTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEE 131 (207)
T ss_pred HHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeeccccccc
Confidence 4556889999999999976655444 568888888755555 9999999999765
No 234
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.27 E-value=9.1e-11 Score=110.10 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=79.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceeEEEEEEEee----CCceEEEEeCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPGLFD 81 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtpG~~~ 81 (285)
.++|+++|+.++|||||+..|+........ ....+.|.........|. .+..++||||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 379999999999999999999854211000 012355665555555442 145689999999876
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+. ..+.+ ++..+|++++|+|+.++....+...+..+... .. |+++++||+|....
T Consensus 87 F~-------~~v~~----sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~---~l--piIvViNKiDl~~a 141 (600)
T PRK05433 87 FS-------YEVSR----SLAACEGALLVVDASQGVEAQTLANVYLALEN---DL--EIIPVLNKIDLPAA 141 (600)
T ss_pred HH-------HHHHH----HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CC--CEEEEEECCCCCcc
Confidence 42 22222 34567999999999877777766555554331 22 89999999997643
No 235
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.27 E-value=7e-11 Score=92.65 Aligned_cols=108 Identities=23% Similarity=0.177 Sum_probs=70.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
+|+++|++|+|||||++.++.... .....+.+.. ....+.. .+ ..+.++||+|....
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f-~~~~~~~~~~---~~~~i~~-~~~~~~l~i~D~~g~~~~---------------- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY-VQLESPEGGR---FKKEVLV-DGQSHLLLIRDEGGAPDA---------------- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCCCCCccc---eEEEEEE-CCEEEEEEEEECCCCCch----------------
Confidence 799999999999999998775542 2222121111 1122333 44 44889999997531
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
.++..+|++++|+|.+++-+-.. ..++..+..... ....|++++.||.|..
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~ 112 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS 112 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence 12356799999999987766665 456666655422 1234899999998864
No 236
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.26 E-value=8.1e-11 Score=110.05 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFDF 82 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtpG~~~~ 82 (285)
+.|+++|+.++|||||+|.|.|..... ....+.|.........+. .-..++++||||+.++
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~--~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAA--KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccc--CCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 799999999999999999999875422 122233333222211110 0012789999998754
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
.. .....+..+|++++|+|+.+++.......+..+... + .|+++++||+|..
T Consensus 85 ~~-----------~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-~----vpiIvviNK~D~~ 136 (586)
T PRK04004 85 TN-----------LRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-K----TPFVVAANKIDRI 136 (586)
T ss_pred HH-----------HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-C----CCEEEEEECcCCc
Confidence 21 111234568999999999877777777777766542 2 2899999999975
No 237
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.1e-10 Score=87.08 Aligned_cols=118 Identities=18% Similarity=0.197 Sum_probs=83.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|++||..|+|||.|++.++....|+......|+..- +..++.. ...++.+|||.|.. .++....
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfm--iktvev~gekiklqiwdtagqe-----------rfrsitq 74 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFM--IKTVEVNGEKIKLQIWDTAGQE-----------RFRSITQ 74 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEE--EEEEEECCeEEEEEEeeccchH-----------HHHHHHH
Confidence 68999999999999999999977766554433343333 3334441 23458999999954 3444555
Q ss_pred hccCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++++.+|++++|+|++..-+.. --.|+..+.......+ -.|+|.||.|..+.
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr 127 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR 127 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh
Confidence 6788999999999986554432 3477888887765554 56788999997654
No 238
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.26 E-value=1.4e-10 Score=95.79 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+|+|+.|+||||..+.|.+...| ......++|.......+.......+.+||.||..++...-. .......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~------~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYF------NSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G-GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTH------TCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccc------cccHHHH
Confidence 6899999999999999999987743 44555677887777777664567899999999986532210 0001123
Q ss_pred cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+..+++++||+|+. ..+...-......+..........++.+++.|+|.+..
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 67789999999996 34443333333333332221223389999999998764
No 239
>PTZ00416 elongation factor 2; Provisional
Probab=99.26 E-value=4e-11 Score=116.68 Aligned_cols=118 Identities=20% Similarity=0.276 Sum_probs=82.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCCcceeEEEEEEEee---------CCceEEE
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK---------DGQVVNV 73 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------~~~~~~l 73 (285)
...++|+++|+.++|||||++.|++........ ...+.|.........+. .+..+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 345799999999999999999999643321100 11244444433344442 1456999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
+||||+.++ ..+ +..++..+|++++|+|+...+...+...++.+... + . |+++++||+|..
T Consensus 97 iDtPG~~~f-------~~~----~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-~--~--p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDF-------SSE----VTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-R--I--RPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhH-------HHH----HHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-C--C--CEEEEEEChhhh
Confidence 999998763 122 23445678999999999878888888888777653 2 2 899999999987
No 240
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.26 E-value=5.8e-11 Score=115.74 Aligned_cols=119 Identities=19% Similarity=0.288 Sum_probs=82.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCCcceeEEEEEEEee---------------
Q 023214 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK--------------- 66 (285)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~--------------- 66 (285)
....++|+|+|+.++|||||++.|+......... ...+.|......+..|.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 4456899999999999999999998544321110 01245555444444442
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeC
Q 023214 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (285)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk 146 (285)
.+..++++||||+.++ ..++. .++..+|++++|+|+..++...+...++.+... .. |+++++||
T Consensus 96 ~~~~inliDtPGh~dF-------~~e~~----~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~---~~--p~i~~iNK 159 (843)
T PLN00116 96 NEYLINLIDSPGHVDF-------SSEVT----AALRITDGALVVVDCIEGVCVQTETVLRQALGE---RI--RPVLTVNK 159 (843)
T ss_pred CceEEEEECCCCHHHH-------HHHHH----HHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC---CC--CEEEEEEC
Confidence 1456899999998764 22232 234567999999999888888888877776553 22 89999999
Q ss_pred CCCC
Q 023214 147 GDEL 150 (285)
Q Consensus 147 ~D~~ 150 (285)
+|..
T Consensus 160 ~D~~ 163 (843)
T PLN00116 160 MDRC 163 (843)
T ss_pred Cccc
Confidence 9987
No 241
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.7e-10 Score=90.08 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|..++|||||++..+-... .. .....+.+........+. ....+.||||.|.. .++..+.
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~f-d~-~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE-----------RFrslip 89 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKF-DN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----------RFRSLIP 89 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhh-cc-cccceeeeEEEEEEEEEcCcEEEEEEEecccHH-----------HHhhhhh
Confidence 6899999999999999999984442 21 111112222222223331 23458899999964 3445566
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcc-ccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~-~~~~~iil~nk~D~~~~ 152 (285)
.+++++.++++|+|+.++-|-+. .+|++-+...-|.. + .+++|.||.|+.+.
T Consensus 90 sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~v--iI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 90 SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDV--IIFLVGNKTDLSDK 143 (221)
T ss_pred hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCce--EEEEEcccccccch
Confidence 77899999999999987777654 67888777766653 3 67778999998876
No 242
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=5e-11 Score=106.32 Aligned_cols=117 Identities=18% Similarity=0.275 Sum_probs=94.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
++.|-++|+...|||||+..|-+..+.. .-.+|+|.+.+.+.+..+.|..++++||||+..|.. .-.
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VAA--~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~a-----------MRa 219 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSVAA--GEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSA-----------MRA 219 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCceeh--hhcCCccceeceEEEecCCCCEEEEecCCcHHHHHH-----------HHh
Confidence 3899999999999999999998877633 334789999999999998899999999999875421 111
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
.-....|.+++|+.+.+++-+.....+..++.. .+ |+++.+||+|....+
T Consensus 220 RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~V--piVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 220 RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NV--PIVVAINKIDKPGAN 269 (683)
T ss_pred ccCccccEEEEEEEccCCccHhHHHHHHHHHhc---CC--CEEEEEeccCCCCCC
Confidence 223446899999999889999998888888775 33 999999999987654
No 243
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.24 E-value=5e-11 Score=90.24 Aligned_cols=101 Identities=22% Similarity=0.260 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.||+|||++|+|||||+++|.|..... .-|.. +.+ .+ .+|||||-+- ....... .+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~------~KTq~-----i~~-~~---~~IDTPGEyi---E~~~~y~----aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY------KKTQA-----IEY-YD---NTIDTPGEYI---ENPRFYH----ALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc------Cccce-----eEe-cc---cEEECChhhe---eCHHHHH----HHHH
Confidence 589999999999999999999876422 12222 222 11 4599999652 2222222 2223
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
....+|.+++|.|++.+.+.--- .+...|.. |+|=|+||.|..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP----~fa~~f~~----pvIGVITK~Dl~ 102 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPP----GFASMFNK----PVIGVITKIDLP 102 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCc----hhhcccCC----CEEEEEECccCc
Confidence 33467999999999644222111 12233432 899999999988
No 244
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.24 E-value=2.5e-10 Score=94.30 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-C--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+++|+.|+|||||++.+.+........ +|....+...... . ...+.++||+|..+ +...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~-----------~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP----PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE-----------YRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCC----CceeeeeEEEEEEeCCCEEEEEeecCCCHHH-----------HHHH
Confidence 799999999999999999999877533211 1222222222221 1 34588999999653 3334
Q ss_pred HhhccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++.++++++++++... +.......+...+....+... |++++.||.|....
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~--~iilv~nK~Dl~~~ 126 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDV--PILLVGNKIDLFDE 126 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCc--eEEEEecccccccc
Confidence 4456889999999999863 233333455555565543223 89999999998865
No 245
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.9e-10 Score=86.84 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..++.++|.+|+|||.|+...+.....+.-....| +......+... ..-++.||||.|...+ ....
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiG--vefg~r~~~id~k~IKlqiwDtaGqe~f-----------rsv~ 72 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIG--VEFGARMVTIDGKQIKLQIWDTAGQESF-----------RSVT 72 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceee--eeeceeEEEEcCceEEEEEEecCCcHHH-----------HHHH
Confidence 37899999999999999999998775333222222 22223333331 2355899999997643 3334
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+|.++-+.|+|+|++.+-|... ..||.-++....+. .-++++.||+|+...
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEAR 126 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhcc
Confidence 456889999999999986655444 35666666653332 256666999997754
No 246
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.23 E-value=1.6e-10 Score=104.03 Aligned_cols=120 Identities=17% Similarity=0.240 Sum_probs=75.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeEEEEEEEee--------------------C-----CceE
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLK--------------------D-----GQVV 71 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~--------------------~-----~~~~ 71 (285)
+..+|+++|+.|+|||||+..|.+..... ......+.|....+....+. . ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 44899999999999999999997742110 01112345555443221110 0 2578
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
+|+||||..++ .. .+......+|++++|+|+.++. .......+..+.. .+.+ ++++++||+|..
T Consensus 88 ~liDtPG~~~f-------~~----~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i~---~iiVVlNK~Dl~ 152 (411)
T PRK04000 88 SFVDAPGHETL-------MA----TMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGIK---NIVIVQNKIDLV 152 (411)
T ss_pred EEEECCCHHHH-------HH----HHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCC---cEEEEEEeeccc
Confidence 99999995421 11 2222334679999999997665 5665666655543 2322 789999999987
Q ss_pred CC
Q 023214 151 ED 152 (285)
Q Consensus 151 ~~ 152 (285)
..
T Consensus 153 ~~ 154 (411)
T PRK04000 153 SK 154 (411)
T ss_pred cc
Confidence 54
No 247
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.23 E-value=1.1e-10 Score=105.22 Aligned_cols=119 Identities=16% Similarity=0.211 Sum_probs=74.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeEEEEEEE--------------e-----------eCCceEE
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTV--------------L-----------KDGQVVN 72 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~-~~~~~~~t~~~~~~~~~--------------~-----------~~~~~~~ 72 (285)
..+|+++|+.++|||||++.|.+...... .....+.|....+.... . ..+..++
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 37999999999999999999987532110 01122344443322111 0 0145799
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
++||||+.++ ...+ ......+|++++|+|+.+.. .......+..+.. ++.. ++++++||+|...
T Consensus 84 liDtPGh~~f-------~~~~----~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi~---~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 84 FVDAPGHETL-------MATM----LSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGIK---NIVIVQNKIDLVS 148 (406)
T ss_pred EEECCCHHHH-------HHHH----HHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCCC---eEEEEEEccccCC
Confidence 9999996432 2222 22234679999999997665 5555555655533 3432 7899999999875
Q ss_pred C
Q 023214 152 D 152 (285)
Q Consensus 152 ~ 152 (285)
.
T Consensus 149 ~ 149 (406)
T TIGR03680 149 K 149 (406)
T ss_pred H
Confidence 4
No 248
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.23 E-value=2.8e-10 Score=94.43 Aligned_cols=110 Identities=20% Similarity=0.218 Sum_probs=72.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
...|+++|++|+|||||+|.|++...........+. .......+..++++||||.. ..+...
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~------i~i~~~~~~~i~~vDtPg~~----------~~~l~~-- 100 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP------ITVVTGKKRRLTFIECPNDI----------NAMIDI-- 100 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc------EEEEecCCceEEEEeCCchH----------HHHHHH--
Confidence 378999999999999999999976432111111111 11112257789999999742 122222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+|.+++|+|+...+...+...+..+... +.+ .+++++||+|....
T Consensus 101 --ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~p---~vi~VvnK~D~~~~ 148 (225)
T cd01882 101 --AKVADLVLLLIDASFGFEMETFEFLNILQVH-GFP---RVMGVLTHLDLFKK 148 (225)
T ss_pred --HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CCC---eEEEEEeccccCCc
Confidence 3456999999999777887777777766553 321 35569999998743
No 249
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.4e-10 Score=90.34 Aligned_cols=115 Identities=24% Similarity=0.278 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+|+|.+|+|||||+-...-.. |... ...|+...+...... .+ ..+.||||.|...+.. .
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~---~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~s-----------l 70 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQ-FHEN---IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHS-----------L 70 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCc-cccc---cccccccEEEEEEEEeCCcEEEEEEEEcCCcccccc-----------c
Confidence 799999999999999987765333 2221 122333333333221 23 4577999999875432 3
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...+|++++++|+|+|+++.-|-.. +.|+..++...++.. .+.++.||+|+..
T Consensus 71 apMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~ 124 (200)
T KOG0092|consen 71 APMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLE 124 (200)
T ss_pred ccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhh
Confidence 3467999999999999985544333 567777777644322 4445799999886
No 250
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.22 E-value=1.6e-10 Score=86.09 Aligned_cols=117 Identities=18% Similarity=0.236 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+..|+|.+|+|||+|+-.+.... |.... ...+.+...+.....+ ....+.|+||.|.. .++...+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddt-Fs~sY-itTiGvDfkirTv~i~G~~VkLqIwDtAGqE-----------rFrtits 75 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDT-FSGSY-ITTIGVDFKIRTVDINGDRVKLQIWDTAGQE-----------RFRTITS 75 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcc-cccce-EEEeeeeEEEEEeecCCcEEEEEEeecccHH-----------HHHHHHH
Confidence 467899999999999998887553 33221 1222233333444442 23568999999943 3444555
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+++++|++++|+|+++.-|... +.||+.+..-+.. + |-++|.||.|....
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds-v--~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS-V--PKVLVGNKNDDPER 127 (198)
T ss_pred HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc-c--cceecccCCCCccc
Confidence 66899999999999975655444 6788888887653 3 88999999998765
No 251
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1e-10 Score=104.32 Aligned_cols=131 Identities=22% Similarity=0.333 Sum_probs=95.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc-------------CCCCcceeEEEEEEEeeC--CceEEEEeCCCC
Q 023214 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA-------------SSSGVTSTCEMQRTVLKD--GQVVNVIDTPGL 79 (285)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~ 79 (285)
+....++++||.+-..|||||...|+....+.... ...|+|+..+..++.|.. ...+++|||||+
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 33456899999999999999999988554421111 224889998888887732 267999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHH
Q 023214 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED 159 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~ 159 (285)
.||.... .+.+. ..+++++|+|++.+.-......+.+..+. + . .+|.|+||+|+...+.+.+..
T Consensus 136 vDFs~EV-------sRsla----ac~G~lLvVDA~qGvqAQT~anf~lAfe~-~--L--~iIpVlNKIDlp~adpe~V~~ 199 (650)
T KOG0462|consen 136 VDFSGEV-------SRSLA----ACDGALLVVDASQGVQAQTVANFYLAFEA-G--L--AIIPVLNKIDLPSADPERVEN 199 (650)
T ss_pred cccccee-------hehhh----hcCceEEEEEcCcCchHHHHHHHHHHHHc-C--C--eEEEeeeccCCCCCCHHHHHH
Confidence 9986433 23333 44899999999888888887776666554 3 2 788999999998776454444
Q ss_pred Hh
Q 023214 160 YL 161 (285)
Q Consensus 160 ~l 161 (285)
-+
T Consensus 200 q~ 201 (650)
T KOG0462|consen 200 QL 201 (650)
T ss_pred HH
Confidence 33
No 252
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.7e-10 Score=109.63 Aligned_cols=157 Identities=14% Similarity=0.040 Sum_probs=88.4
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEe----CC
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID----TP 77 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liD----tp 77 (285)
|+..+++++||.+.+| .+++|+|+||+|||||+++|+|...+.+|...........+..+.. .....+.++ .+
T Consensus 12 g~~~~l~~vs~~i~~G--e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~-~~~~~~~~~~v~~~~ 88 (638)
T PRK10636 12 GVRVLLDNATATINPG--QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQET-PALPQPALEYVIDGD 88 (638)
T ss_pred CCceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCC-CCCCCCHHHHHHHhh
Confidence 5677999999999999 8999999999999999999999876655432111111111111100 000000000 00
Q ss_pred CCCC-C---------CCC---------------cHHHHHHHHHHHhhccCCccEEEEEEe-CCCCCCHHHHHHHHHHHHH
Q 023214 78 GLFD-F---------SAG---------------SEFVGKEIVKCIGMAKDGIHAVLVVFS-VRSRFSQEEEAALHSLQTL 131 (285)
Q Consensus 78 G~~~-~---------~~~---------------~~~~~~~~~~~~~~~~~~~~~~l~v~~-~~~~~~~~~~~~l~~~~~~ 131 (285)
.... . ... .......+...+... +... ...+ .-..+|++.++++.+++.+
T Consensus 89 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~--~~~~~~~~~LSgGerqRv~LA~aL 164 (638)
T PRK10636 89 REYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSN--EQLERPVSDFSGGWRMRLNLAQAL 164 (638)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCc--hhhcCchhhcCHHHHHHHHHHHHH
Confidence 0000 0 000 000000011111000 1100 0111 1247999999999999998
Q ss_pred hCccccCeEEEE---EeCCCCCCCChhcHHHHhhhcCCchhH
Q 023214 132 FGKKIFDYMIVV---FTGGDELEDNDETLEDYLGRECPKPLK 170 (285)
Q Consensus 132 ~~~~~~~~~iil---~nk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (285)
+..+ .++++ +||+|.... ..+.+++..+.++.+.
T Consensus 165 ~~~P---~lLLLDEPtn~LD~~~~--~~L~~~L~~~~~tvii 201 (638)
T PRK10636 165 ICRS---DLLLLDEPTNHLDLDAV--IWLEKWLKSYQGTLIL 201 (638)
T ss_pred ccCC---CEEEEcCCCCcCCHHHH--HHHHHHHHhCCCeEEE
Confidence 8765 67777 999998877 8899999876555444
No 253
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.3e-10 Score=102.75 Aligned_cols=131 Identities=20% Similarity=0.208 Sum_probs=85.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC-CCCCcHHHHHHH
Q 023214 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD-FSAGSEFVGKEI 93 (285)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~-~~~~~~~~~~~~ 93 (285)
..| ..|+|+|++++|||||+|+|+........+ ..|.|...--..+.. +|.++.|+||.|+-. .....+.++ +
T Consensus 266 q~g--l~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~~~iE~~g--I 339 (531)
T KOG1191|consen 266 QSG--LQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESNDGIEALG--I 339 (531)
T ss_pred hcC--CeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEeec-CCeEEEEEeccccccccCChhHHHh--H
Confidence 445 899999999999999999999887633322 235555544455555 899999999999986 211222211 2
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH---hCcc----ccCeEEEEEeCCCCCCC
Q 023214 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL---FGKK----IFDYMIVVFTGGDELED 152 (285)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~---~~~~----~~~~~iil~nk~D~~~~ 152 (285)
. ........+|++++|+|+....+..+....+.+... +... ...+++++.||.|..++
T Consensus 340 ~-rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 340 E-RARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred H-HHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 2 222335678999999999545555554433333332 1111 11478899999998765
No 254
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.21 E-value=2.3e-10 Score=92.79 Aligned_cols=115 Identities=18% Similarity=0.068 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCCHHHHHH-HHhCCcccccc--cCCCCcceeE--EEEE---------EEe-eCCceEEEEeCCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGN-SILGRRAFKSR--ASSSGVTSTC--EMQR---------TVL-KDGQVVNVIDTPGLFDFSA 84 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln-~l~g~~~~~~~--~~~~~~t~~~--~~~~---------~~~-~~~~~~~liDtpG~~~~~~ 84 (285)
.+|+++|..|+|||||+. .+.+.. +..+ .....+|+.. .+.. ... .....+.|+||+|....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~-~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKT-LTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC-cccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 689999999999999995 554432 1111 0111122210 0110 012 11346889999997531
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
+ ...+++++|++++|+|++++-+-... .|+..+..... . .|+++|.||.|+..
T Consensus 80 --------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~~ 134 (195)
T cd01873 80 --------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-R--VPVILVGCKLDLRY 134 (195)
T ss_pred --------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhccc
Confidence 1 12357899999999999867666554 35666655432 3 38999999999753
No 255
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.20 E-value=1.9e-10 Score=100.52 Aligned_cols=140 Identities=18% Similarity=0.198 Sum_probs=86.7
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCC---cceeEEE---EE
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSG---VTSTCEM---QR 62 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~--------------~~~~---~t~~~~~---~~ 62 (285)
.-.++.++.-.- |....|+++|+..+|||||+|.+++..+.|.-. +..| .|+.+.+ ..
T Consensus 3 ~~~iykDIa~RT--~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kA 80 (492)
T TIGR02836 3 KVDIYKDIAERT--QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEA 80 (492)
T ss_pred chhHHHHHHHHh--CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcc
Confidence 334555543332 333899999999999999999999994432211 2233 4555555 33
Q ss_pred EEeeCC----ceEEEEeCCCCCCCCCCcHHHHHH----------------------HHHHHhhccCCccEEEEEE-eCC-
Q 023214 63 TVLKDG----QVVNVIDTPGLFDFSAGSEFVGKE----------------------IVKCIGMAKDGIHAVLVVF-SVR- 114 (285)
Q Consensus 63 ~~~~~~----~~~~liDtpG~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~v~-~~~- 114 (285)
.+.... .++.++||+|+.+.......-... -.+.+ ...++..++|. |++
T Consensus 81 vEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI---~dhstIgivVtTDgsi 157 (492)
T TIGR02836 81 VEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVI---QEHSTIGVVVTTDGTI 157 (492)
T ss_pred eEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHH---HhcCcEEEEEEcCCCc
Confidence 333223 679999999998654321111111 11122 22567778787 553
Q ss_pred -----CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 115 -----SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 115 -----~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+...+..++..++.. +. |+++|+|+.|-...
T Consensus 158 ~dI~Re~y~~aEe~~i~eLk~~-~k----PfiivlN~~dp~~~ 195 (492)
T TIGR02836 158 TDIPREDYVEAEERVIEELKEL-NK----PFIILLNSTHPYHP 195 (492)
T ss_pred cccccccchHHHHHHHHHHHhc-CC----CEEEEEECcCCCCc
Confidence 35667778888888876 33 99999999995433
No 256
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.19 E-value=1.8e-11 Score=109.28 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=97.0
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeC-------C
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDT-------P 77 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDt-------p 77 (285)
.++.+++|-+..+ -||++|||||+|||||++.++|...|..|.+..+......++.+.... ..-.|- |
T Consensus 404 ~iy~~l~fgid~~--srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e---~ldl~~s~le~~~~ 478 (614)
T KOG0927|consen 404 MIYKKLNFGIDLD--SRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE---QLDLDKSSLEFMMP 478 (614)
T ss_pred hhhhhhhcccCcc--cceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHh---hcCcchhHHHHHHH
Confidence 4677777888888 799999999999999999999999888776555444333334433311 011111 1
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCCh
Q 023214 78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDND 154 (285)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~ 154 (285)
-+.+ ... ...++..+..+ +..+-.-+.... .+|.+++.++-++..+...+ +++++ +||+|...-
T Consensus 479 ~~~~--~~~---~e~~r~ilgrf--gLtgd~q~~p~~-~LS~Gqr~rVlFa~l~~kqP---~lLlLDEPtnhLDi~ti-- 545 (614)
T KOG0927|consen 479 KFPD--EKE---LEEMRSILGRF--GLTGDAQVVPMS-QLSDGQRRRVLFARLAVKQP---HLLLLDEPTNHLDIETI-- 545 (614)
T ss_pred hccc--cch---HHHHHHHHHHh--CCCccccccchh-hcccccchhHHHHHHHhcCC---cEEEecCCCcCCCchhH--
Confidence 1111 111 23344444333 223333444444 88899999999998887664 56666 999999888
Q ss_pred hcHHHHhhhcCCchhH
Q 023214 155 ETLEDYLGRECPKPLK 170 (285)
Q Consensus 155 ~~l~~~l~~~~~~~l~ 170 (285)
+.+.+++..+++..+.
T Consensus 546 d~laeaiNe~~Ggvv~ 561 (614)
T KOG0927|consen 546 DALAEAINEFPGGVVL 561 (614)
T ss_pred HHHHHHHhccCCceee
Confidence 8999999988884443
No 257
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.2e-10 Score=102.58 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
+.|.++|+--.|||||+..|-+...... -..+.|.+...+.+.+. ....++++||||+..|....
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mR----------- 72 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMR----------- 72 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHH-----------
Confidence 7999999999999999999998876333 34688999999998885 34789999999987653111
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~ 162 (285)
..-..-.|.+++|+++.+.+-+.+...+..++.. + + |+++..||+|....+...+..-+.
T Consensus 73 aRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-~--v--P~iVAiNKiDk~~~np~~v~~el~ 132 (509)
T COG0532 73 ARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-G--V--PIVVAINKIDKPEANPDKVKQELQ 132 (509)
T ss_pred hcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-C--C--CEEEEEecccCCCCCHHHHHHHHH
Confidence 1122336899999999999999999998888875 3 3 999999999999765444444333
No 258
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.18 E-value=1.6e-10 Score=111.06 Aligned_cols=117 Identities=19% Similarity=0.308 Sum_probs=77.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeEEEEE----EEeeCCceEEEEeCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQR----TVLKDGQVVNVIDTPGLF 80 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~--------------~~~~~~~~~t~~~~~~~----~~~~~~~~~~liDtpG~~ 80 (285)
.++|+++|+.|+|||||++.|+..... .......+.|....... ..+ .+..++++||||+.
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG~~ 97 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPGHV 97 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCCcc
Confidence 479999999999999999998743110 00001123444433222 333 56789999999998
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++. ... ..++..+|++++|+|+...+...+...+..+... + . |.++++||+|....
T Consensus 98 ~f~-------~~~----~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-~--~--p~ivviNKiD~~~~ 153 (720)
T TIGR00490 98 DFG-------GDV----TRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-N--V--KPVLFINKVDRLIN 153 (720)
T ss_pred ccH-------HHH----HHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-C--C--CEEEEEEChhcccc
Confidence 753 112 2345677999999999767777776666655432 2 1 67899999998743
No 259
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.17 E-value=6e-10 Score=101.22 Aligned_cols=116 Identities=20% Similarity=0.238 Sum_probs=78.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeEEEEEEEeeCCc
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKDGQ 69 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~ 69 (285)
..+|+++|+.++|||||+-.|+....... .....++|....+....+ .+.
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~~~ 85 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TKY 85 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-CCE
Confidence 37899999999999999988773221000 001247788877777777 688
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-CC------HHHHHHHHHHHHHhCccccCeEEE
Q 023214 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FS------QEEEAALHSLQTLFGKKIFDYMIV 142 (285)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~------~~~~~~l~~~~~~~~~~~~~~~ii 142 (285)
.++++||||+.++ .. .....+..+|++++|+|+... +. +..+..+..+.. ++-+ ++++
T Consensus 86 ~i~liDtPGh~df-------~~----~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi~---~iIV 150 (447)
T PLN00043 86 YCTVIDAPGHRDF-------IK----NMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGVK---QMIC 150 (447)
T ss_pred EEEEEECCCHHHH-------HH----HHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCCC---cEEE
Confidence 9999999997543 12 222335678999999999643 22 344455554443 3433 6788
Q ss_pred EEeCCCCC
Q 023214 143 VFTGGDEL 150 (285)
Q Consensus 143 l~nk~D~~ 150 (285)
++||+|..
T Consensus 151 ~vNKmD~~ 158 (447)
T PLN00043 151 CCNKMDAT 158 (447)
T ss_pred EEEcccCC
Confidence 99999965
No 260
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.17 E-value=7.2e-11 Score=93.38 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEE--eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..|+|+|++|+|||+|+..|.......+-.+. ... .... ...+..+.|||+||+...+ ..+...+
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-----e~n-~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~ 70 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-----ENN-IAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL 70 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-----SEE-EECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-----cCC-ceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence 68999999999999999999866443332221 111 1111 1135679999999987532 2222221
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC----ccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~iil~nk~D~~~~ 152 (285)
. +.+.+.+++||+|.. .+...-+...+.+-..+. .....|++|+.||.|....
T Consensus 71 ~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 71 K-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp H-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred h-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 1 244578999999975 333333444444444332 1223599999999998764
No 261
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1e-09 Score=95.40 Aligned_cols=127 Identities=21% Similarity=0.268 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccc--------------cc---------------CCCCcceeEEEEEEEeeCCce
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKS--------------RA---------------SSSGVTSTCEMQRTVLKDGQV 70 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~~---------------~~~~~t~~~~~~~~~~~~~~~ 70 (285)
.+++++|+..+|||||+-.|+-...... +. ...|+|....+...+. +-..
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k~~ 86 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DKYN 86 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CCce
Confidence 7999999999999999987773322100 00 0127888887777777 6678
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccCeEEEE
Q 023214 71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIVV 143 (285)
Q Consensus 71 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~iil 143 (285)
++|+|+||+-|| ...+ + .....+|+.++|+++... ..+..+..+-++ ..+|-. ..|++
T Consensus 87 ~tIiDaPGHrdF-------vknm---I-tGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La-~tlGi~---~lIVa 151 (428)
T COG5256 87 FTIIDAPGHRDF-------VKNM---I-TGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLA-RTLGIK---QLIVA 151 (428)
T ss_pred EEEeeCCchHHH-------HHHh---h-cchhhccEEEEEEECCCCccccccccCCchhHHHHHH-HhcCCc---eEEEE
Confidence 999999996543 1111 1 223457999999999655 455555554444 444644 88999
Q ss_pred EeCCCCCCCChhcHHHHhh
Q 023214 144 FTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~ 162 (285)
+||+|..+-+...+++...
T Consensus 152 vNKMD~v~wde~rf~ei~~ 170 (428)
T COG5256 152 VNKMDLVSWDEERFEEIVS 170 (428)
T ss_pred EEcccccccCHHHHHHHHH
Confidence 9999988654455555444
No 262
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.16 E-value=3.7e-10 Score=99.06 Aligned_cols=117 Identities=23% Similarity=0.370 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc-cccc-----------c--CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRA-FKSR-----------A--SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~-~~~~-----------~--~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (285)
.+|++|.+...|||||+..|+.+.. |... . -..|+|+-.....+.| ++..++|+||||+.||.+.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGGE 84 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccch
Confidence 6999999999999999999997653 1111 0 1247888877788888 8999999999999999765
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
.+.+ +.-+|++++++|+.+..-+..+-.+...... |- +.|+|+||+|.....
T Consensus 85 VERv-----------l~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~-gL----~PIVVvNKiDrp~Ar 136 (603)
T COG1217 85 VERV-----------LSMVDGVLLLVDASEGPMPQTRFVLKKALAL-GL----KPIVVINKIDRPDAR 136 (603)
T ss_pred hhhh-----------hhhcceEEEEEEcccCCCCchhhhHHHHHHc-CC----CcEEEEeCCCCCCCC
Confidence 5432 4567999999999777777787776666553 32 678999999988654
No 263
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.4e-09 Score=94.89 Aligned_cols=131 Identities=21% Similarity=0.262 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-----------------------------------------CcceeE
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----------------------------------------GVTSTC 58 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-----------------------------------------~~t~~~ 58 (285)
.+|++.|.+.+||||++|+++-....|++..+. ...-..
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~ 189 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG 189 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcc
Confidence 699999999999999999999888777665432 000001
Q ss_pred EEEEEEeeCC------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 023214 59 EMQRTVLKDG------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF 132 (285)
Q Consensus 59 ~~~~~~~~~~------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~ 132 (285)
....+.|+.+ ..+.++|.||+.-. .+...++..+...+|+++||+.+.+.++..++.++..+...
T Consensus 190 sLlrV~~p~~~csLLrnDivliDsPGld~~--------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~- 260 (749)
T KOG0448|consen 190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE- 260 (749)
T ss_pred eEEEEEecCccchhhhccceeccCCCCCCc--------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-
Confidence 1112333222 35889999998732 22233444556688999999999888999998888877664
Q ss_pred CccccCeEEEEEeCCCCCCCChhcHHHHhhh
Q 023214 133 GKKIFDYMIVVFTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 133 ~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~ 163 (285)
+ ++++|+.||||......+-.++.+++
T Consensus 261 -K---pniFIlnnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 261 -K---PNIFILNNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred -C---CcEEEEechhhhhcccHHHHHHHHHH
Confidence 2 38999999999876644444444443
No 264
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.15 E-value=6.2e-10 Score=91.58 Aligned_cols=78 Identities=23% Similarity=0.225 Sum_probs=46.8
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHH-HhCccccCeEEEEEeCC
Q 023214 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQT-LFGKKIFDYMIVVFTGG 147 (285)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~~~iil~nk~ 147 (285)
.+.||||||..+...+.. .+.-|...+... .+-+++||+|....-++... ..+-..+. ++.-.. |+|+++||.
T Consensus 117 ~~~liDTPGQIE~FtWSA-sGsIIte~lass--~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktkl--p~ivvfNK~ 191 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSA-SGSIITETLASS--FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKL--PFIVVFNKT 191 (366)
T ss_pred CEEEEcCCCceEEEEecC-CccchHhhHhhc--CCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccC--CeEEEEecc
Confidence 488999999976543322 234444445444 34788999997423333331 22223333 233333 999999999
Q ss_pred CCCCC
Q 023214 148 DELED 152 (285)
Q Consensus 148 D~~~~ 152 (285)
|....
T Consensus 192 Dv~d~ 196 (366)
T KOG1532|consen 192 DVSDS 196 (366)
T ss_pred ccccc
Confidence 98766
No 265
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.14 E-value=5.8e-10 Score=104.64 Aligned_cols=113 Identities=21% Similarity=0.241 Sum_probs=73.5
Q ss_pred cCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCcc
Q 023214 26 GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIH 105 (285)
Q Consensus 26 G~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (285)
|.+|+|||||+|.++|.... .+ ...++|+........+ ++..+.++||||..+......+ +.+.+.+. ....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-v~-n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~l-~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-VG-NWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLE--EEVARDYL-LNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-ec-CCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchH--HHHHHHHH-hhcCCC
Confidence 88999999999999998642 22 3456777766666666 6778999999999875432211 12222211 134689
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 106 AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 106 ~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
++++|+|++ .+.. . +....+..... .|+++++||+|...
T Consensus 75 vvI~VvDat-~ler-~---l~l~~ql~~~~--~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 75 LVVNVVDAS-NLER-N---LYLTLQLLELG--IPMILALNLVDEAE 113 (591)
T ss_pred EEEEEecCC-cchh-h---HHHHHHHHhcC--CCEEEEEehhHHHH
Confidence 999999986 3322 1 22222222222 39999999999764
No 266
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2.8e-10 Score=99.21 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=90.3
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHh--CCcccccccCC------------------CCcceeEEEEEEEeeCCceEEE
Q 023214 14 SPSNGERTVVLVGRTGNGKSATGNSIL--GRRAFKSRASS------------------SGVTSTCEMQRTVLKDGQVVNV 73 (285)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlln~l~--g~~~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~l 73 (285)
+.+. ++.+||.++.+|||||-..|+ |......|... .|+++..+.....| .+..++|
T Consensus 9 v~rR--RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNL 85 (528)
T COG4108 9 VARR--RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNL 85 (528)
T ss_pred Hhhh--cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEec
Confidence 4455 799999999999999987655 32222222111 27777777777888 7899999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
+||||+.|++.+... .+..+|.++.|+|+..++.+..++.++.++.. + . |++-++||+|....+
T Consensus 86 LDTPGHeDFSEDTYR-----------tLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR-~--i--PI~TFiNKlDR~~rd 149 (528)
T COG4108 86 LDTPGHEDFSEDTYR-----------TLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR-D--I--PIFTFINKLDREGRD 149 (528)
T ss_pred cCCCCccccchhHHH-----------HHHhhheeeEEEecccCccHHHHHHHHHHhhc-C--C--ceEEEeeccccccCC
Confidence 999999998543321 13456899999999778999998888877664 3 2 899999999998775
No 267
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.12 E-value=9.9e-10 Score=93.27 Aligned_cols=125 Identities=19% Similarity=0.171 Sum_probs=82.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
-|++||-+++|||||++.+....+-... ...+|..+....+....+..+++-|.||+........-++.++++.+..|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIad--YpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIAD--YPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccC--CccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 4789999999999999999987753222 23345555555555545677999999999876555555677777777666
Q ss_pred cCCccEEEEEEeCCCCCC---HH-HHHHHHHHHHHhCcc-ccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFS---QE-EEAALHSLQTLFGKK-IFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~---~~-~~~~l~~~~~~~~~~-~~~~~iil~nk~D~~~~ 152 (285)
.++++|+|++ +.. +. +...+..-...+... ..+|.+|++||+|...+
T Consensus 239 ----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 239 ----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred ----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 6889999985 333 22 222222222222221 12489999999995544
No 268
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.11 E-value=1.7e-09 Score=102.95 Aligned_cols=156 Identities=19% Similarity=0.088 Sum_probs=88.1
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCC--CC
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTP--GL 79 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtp--G~ 79 (285)
|+.++++++||.+.+| .+++|+|+||+|||||+++|+|...+.+|...........+..+........++++.+ ++
T Consensus 14 ~~~~il~~is~~i~~G--e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~ 91 (635)
T PRK11147 14 SDAPLLDNAELHIEDN--ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGI 91 (635)
T ss_pred CCceeEeCcEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhh
Confidence 4567899999999999 8999999999999999999999877655432111111111111100000000111100 00
Q ss_pred CC---------------CCCCcHH-------------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHH
Q 023214 80 FD---------------FSAGSEF-------------------VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 125 (285)
Q Consensus 80 ~~---------------~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l 125 (285)
.. ....... ....+...+.. + +.. . -..-..+|+++++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l-gl~---~-~~~~~~LSgGekqRv 165 (635)
T PRK11147 92 EEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ-L-GLD---P-DAALSSLSGGWLRKA 165 (635)
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh-C-CCC---C-CCchhhcCHHHHHHH
Confidence 00 0000000 00001111100 0 010 0 011247999999999
Q ss_pred HHHHHHhCccccCeEEEE---EeCCCCCCCChhcHHHHhhhcCCchhH
Q 023214 126 HSLQTLFGKKIFDYMIVV---FTGGDELEDNDETLEDYLGRECPKPLK 170 (285)
Q Consensus 126 ~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (285)
.+++.++..+ +++|+ +|++|.... ..+.+++....++.+.
T Consensus 166 ~LAraL~~~P---~lLLLDEPt~~LD~~~~--~~L~~~L~~~~~tvli 208 (635)
T PRK11147 166 ALGRALVSNP---DVLLLDEPTNHLDIETI--EWLEGFLKTFQGSIIF 208 (635)
T ss_pred HHHHHHhcCC---CEEEEcCCCCccCHHHH--HHHHHHHHhCCCEEEE
Confidence 9999988765 67777 999998877 8899999876655444
No 269
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.11 E-value=3.9e-10 Score=108.67 Aligned_cols=119 Identities=19% Similarity=0.299 Sum_probs=79.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCCcceeEEEEEEEe--e-CCceEEEEeCCCC
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVL--K-DGQVVNVIDTPGL 79 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~--~-~~~~~~liDtpG~ 79 (285)
...++|+++|+.++|||||+..|+......... ...+.|......+..| . .+..++|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 345799999999999999999998533211100 0113444444333333 1 2566899999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.++. ..+ ..++..+|++++|+|+...+...+...+..+... +. |.++++||+|...
T Consensus 98 ~df~-------~~~----~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~~----~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFG-------GDV----TRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-RV----KPVLFINKVDRLI 153 (731)
T ss_pred cChH-------HHH----HHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-CC----CeEEEEECchhhc
Confidence 8742 222 2334567999999999778888888777765443 32 6789999999764
No 270
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.11 E-value=1.4e-10 Score=85.67 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=86.8
Q ss_pred ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 023214 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK 91 (285)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 91 (285)
+.++++...||+++|-.++|||||++.|.++.+-. ..+|.........+.....++++|..|.-.
T Consensus 10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~h-----ltpT~GFn~k~v~~~g~f~LnvwDiGGqr~---------- 74 (185)
T KOG0074|consen 10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRH-----LTPTNGFNTKKVEYDGTFHLNVWDIGGQRG---------- 74 (185)
T ss_pred hcCCCcceEEEEEEecCCCcchhHHHHHccCChhh-----ccccCCcceEEEeecCcEEEEEEecCCccc----------
Confidence 45666777999999999999999999999887522 222333344455553457899999888543
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214 92 EIVKCIGMAKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~ 162 (285)
++-+++++|..+|+++||+|..+. +........+++...--.. .|++|..||.|++.. ...++.-.
T Consensus 75 -IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~--vpvlIfankQdllta--a~~eeia~ 142 (185)
T KOG0074|consen 75 -IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAE--VPVLIFANKQDLLTA--AKVEEIAL 142 (185)
T ss_pred -cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhc--cceeehhhhhHHHhh--cchHHHHH
Confidence 344667789999999999997533 2211122222222211112 388999999999876 55555443
No 271
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.10 E-value=5.2e-11 Score=98.56 Aligned_cols=44 Identities=27% Similarity=0.331 Sum_probs=39.7
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS 50 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~ 50 (285)
++..|+|+.+++| ..++|+||||+|||||+++|+|-..|..|..
T Consensus 18 ~vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i 61 (254)
T COG1121 18 PVLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLKPSSGEI 61 (254)
T ss_pred eeeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCcCCcceE
Confidence 6899999999999 8999999999999999999999877766543
No 272
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.09 E-value=2e-10 Score=90.73 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=38.7
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+++++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 14 ~~~l~~i~l~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (166)
T cd03223 14 RVLLKDLSFEIKPG--DRLLITGPSGTGKSSLFRALAGLWPWGSG 56 (166)
T ss_pred CeeeecCeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 46899999999999 89999999999999999999998766554
No 273
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.09 E-value=7.8e-10 Score=93.67 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=58.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC----------------ceEEEEeCCCCCCCCCC
Q 023214 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFSAG 85 (285)
Q Consensus 22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtpG~~~~~~~ 85 (285)
|+|||.+++|||||+|+|++.....+ ...++|.........+... ..+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~--n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAA--NYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccc--cccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 58999999999999999999876322 2244555555555555222 14899999999854332
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeC
Q 023214 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSV 113 (285)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 113 (285)
...++..+. .....+|++++|+++
T Consensus 79 ~~glg~~fL----~~i~~~D~li~VV~~ 102 (274)
T cd01900 79 GEGLGNKFL----SHIREVDAIAHVVRC 102 (274)
T ss_pred hhHHHHHHH----HHHHhCCEEEEEEeC
Confidence 333333333 345677999999987
No 274
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.08 E-value=6.5e-10 Score=93.67 Aligned_cols=95 Identities=19% Similarity=0.274 Sum_probs=63.6
Q ss_pred ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 023214 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK 91 (285)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 91 (285)
|.+.....-+++|||.+++|||||+|.|+|...-... ...+|..+...-.++ .|..+.++|+||+..........++
T Consensus 56 f~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~--y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~ 132 (365)
T COG1163 56 FAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVAD--YPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGR 132 (365)
T ss_pred ceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccc--cCceecccccceEee-cCceEEEEcCcccccCcccCCCCcc
Confidence 3333333379999999999999999999988753222 233455555566777 8999999999999754333322223
Q ss_pred HHHHHHhhccCCccEEEEEEeC
Q 023214 92 EIVKCIGMAKDGIHAVLVVFSV 113 (285)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~ 113 (285)
++. ...+.+|.+++|+|+
T Consensus 133 ~vl----sv~R~ADlIiiVld~ 150 (365)
T COG1163 133 QVL----SVARNADLIIIVLDV 150 (365)
T ss_pred eee----eeeccCCEEEEEEec
Confidence 333 234566888888874
No 275
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.9e-09 Score=80.76 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE--EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+++++|+.|+|||.|+..+..... .... ++|+.+.+. .+... ...++.||||.|.. .++..
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kf-kDds---sHTiGveFgSrIinVGgK~vKLQIWDTAGQE-----------rFRSV 74 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKF-KDDS---SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQE-----------RFRSV 74 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhh-cccc---cceeeeeecceeeeecCcEEEEEEeecccHH-----------HHHHH
Confidence 6899999999999999999886553 2222 223333332 33331 13458899999954 45556
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+|+++-+.++|+|++++-+.... .|+.-++.+..+.+ -++++.||.|+...
T Consensus 75 tRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 75 TRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPE 129 (214)
T ss_pred HHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChh
Confidence 66779999999999999867665554 44555555433321 34444899997644
No 276
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.07 E-value=5.9e-09 Score=86.32 Aligned_cols=106 Identities=20% Similarity=0.120 Sum_probs=66.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC-cccccccCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGR-RAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
...|+++|+.++|||||+|.|+|. ..|..+.....+|.....+..... .+..+.++||||+.+...........+..
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 468999999999999999999998 356665555566665555544442 25779999999999875543111111111
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHH
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQ 129 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~ 129 (285)
.. . . -.+.++|.++. .....+...+..+.
T Consensus 87 l~-~-l-lss~~i~n~~~--~~~~~~~~~l~~~~ 115 (224)
T cd01851 87 LA-T-L-LSSVLIYNSWE--TILGDDLAALMGLL 115 (224)
T ss_pred HH-H-H-HhCEEEEeccC--cccHHHHHHHHHHH
Confidence 11 1 1 24677777664 34445554444443
No 277
>PTZ00258 GTP-binding protein; Provisional
Probab=99.07 E-value=1.3e-09 Score=96.41 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=61.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC----------------CceEEEEeCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS 83 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~~~~ 83 (285)
.+|+|||.+++|||||+|+|++.....+. .+++|..+......+.+ +..+.++||||+....
T Consensus 22 ~kvgIVG~PNvGKSTLfnaLt~~~~~v~n--~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 22 LKMGIVGLPNVGKSTTFNALCKQQVPAEN--FPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred cEEEEECCCCCChHHHHHHHhcCcccccC--CCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 79999999999999999999987753222 24556666666555522 2248999999998543
Q ss_pred CCcHHHHHHHHHHHhhccCCccEEEEEEeC
Q 023214 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSV 113 (285)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 113 (285)
.....++..+. .....+|++++|+++
T Consensus 100 ~~g~gLg~~fL----~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 100 SEGEGLGNAFL----SHIRAVDGIYHVVRA 125 (390)
T ss_pred cchhHHHHHHH----HHHHHCCEEEEEEeC
Confidence 32233333333 345667999999997
No 278
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.07 E-value=1.9e-09 Score=97.92 Aligned_cols=121 Identities=13% Similarity=0.194 Sum_probs=76.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeEEEEEEE---------------eeC-------------
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTV---------------LKD------------- 67 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~-~~~~~~t~~~~~~~~~---------------~~~------------- 67 (285)
.+..+|+++|+-..|||||+.+|+|....... ....|.|....+.... +..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 34489999999999999999999987542111 1122344333332110 000
Q ss_pred ----CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhCccccCeEEE
Q 023214 68 ----GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIV 142 (285)
Q Consensus 68 ----~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ii 142 (285)
...++++||||+.+ ....+ ......+|++++|+++..+ ..+..+..+..+. .++-+ ++++
T Consensus 112 ~~~~~~~i~~IDtPGH~~-------fi~~m----~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi~---~iIV 176 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDI-------LMATM----LNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKLK---HIII 176 (460)
T ss_pred cccccceEeeeeCCCHHH-------HHHHH----HHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCCC---cEEE
Confidence 24689999999632 22222 2334577999999999754 4555555555443 34543 7899
Q ss_pred EEeCCCCCCC
Q 023214 143 VFTGGDELED 152 (285)
Q Consensus 143 l~nk~D~~~~ 152 (285)
++||+|....
T Consensus 177 vlNKiDlv~~ 186 (460)
T PTZ00327 177 LQNKIDLVKE 186 (460)
T ss_pred EEecccccCH
Confidence 9999998754
No 279
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.07 E-value=4.7e-10 Score=99.25 Aligned_cols=126 Identities=23% Similarity=0.243 Sum_probs=82.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+++|+|-+++|||||+|.++-..+-.. ....+|...-.++..+ .-..+.++||||+.|....+..+ -++.....
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevq--pYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdrN~-IEmqsITA 243 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQ--PYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDRNI-IEMQIITA 243 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccC--Ccccccchhhhhhhhh-heeeeeecCCccccCcchhhhhH-HHHHHHHH
Confidence 37999999999999999999886554211 1122333333344444 45668999999999864333222 22222221
Q ss_pred hccCCccEEEEEEeCC--CCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVR--SRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~--~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+ .-..++||++|.+ ++.|..+ ......++-+|... ++|+|+||+|....
T Consensus 244 LA-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 244 LA-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP 296 (620)
T ss_pred HH-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc
Confidence 11 1124789999985 4566555 46777888888766 89999999998866
No 280
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=6.9e-10 Score=91.86 Aligned_cols=141 Identities=19% Similarity=0.160 Sum_probs=79.6
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|.... +.... .. ...-..+.+.|.+...
T Consensus 17 ~~il~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~------~~-~~~i~~v~q~~~~~~~ 87 (220)
T cd03293 17 VTALEDISLSVEEG--EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT------GP-GPDRGYVFQQDALLPW 87 (220)
T ss_pred eEEEeceeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc------cc-cCcEEEEecccccccC
Confidence 46899999999999 899999999999999999999987655543211 10000 00 1111233444444321
Q ss_pred CCCcHHH--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---Ee
Q 023214 83 SAGSEFV--------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FT 145 (285)
Q Consensus 83 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~n 145 (285)
....+.+ ...+...+.. + +... +.-.....+|+++++++.+++.+...+ +++++ ++
T Consensus 88 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~--~~~~~~~~LSgG~~qrl~la~al~~~p---~lllLDEPt~ 160 (220)
T cd03293 88 LTVLDNVALGLELQGVPKAEARERAEELLEL-V-GLSG--FENAYPHQLSGGMRQRVALARALAVDP---DVLLLDEPFS 160 (220)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-c-CChh--hhhCCcccCCHHHHHHHHHHHHHHcCC---CEEEECCCCC
Confidence 1111110 0111111111 1 1111 111112479999999999999987765 67777 77
Q ss_pred CCCCCCCChhcHHHHhh
Q 023214 146 GGDELEDNDETLEDYLG 162 (285)
Q Consensus 146 k~D~~~~~~~~l~~~l~ 162 (285)
.+|.... ..+.+++.
T Consensus 161 ~LD~~~~--~~~~~~l~ 175 (220)
T cd03293 161 ALDALTR--EQLQEELL 175 (220)
T ss_pred CCCHHHH--HHHHHHHH
Confidence 7775544 44444443
No 281
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.06 E-value=5.1e-10 Score=91.66 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=41.3
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
++..+++++|+.+..| ..|+|+||+|+|||||+|.|+|-..+..|.
T Consensus 14 ~~~~vl~~i~L~v~~G--EfvsilGpSGcGKSTLLriiAGL~~p~~G~ 59 (248)
T COG1116 14 GGVEVLEDINLSVEKG--EFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59 (248)
T ss_pred CceEEeccceeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 3457889999999999 899999999999999999999999877763
No 282
>PRK12740 elongation factor G; Reviewed
Probab=99.06 E-value=1.8e-09 Score=103.54 Aligned_cols=111 Identities=24% Similarity=0.329 Sum_probs=78.1
Q ss_pred EcCCCCCHHHHHHHHhCCcccccc---c-------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 023214 25 VGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (285)
Q Consensus 25 vG~~g~GKSTlln~l~g~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 88 (285)
+|+.++|||||++.|+........ . ...++|+........+ .+..+++|||||..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 699999999999999644321110 0 1246677777777777 7889999999998642
Q ss_pred HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..... .++..+|++++|+|+...........+..+... + .|+++++||+|....
T Consensus 74 -~~~~~----~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-~----~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -TGEVE----RALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-G----VPRIIFVNKMDRAGA 127 (668)
T ss_pred -HHHHH----HHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 12222 234467999999999777777776666665542 2 289999999998754
No 283
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.06 E-value=1.6e-09 Score=94.84 Aligned_cols=89 Identities=18% Similarity=0.136 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS 83 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtpG~~~~~ 83 (285)
.+|+|||.+++|||||+|+|++.....+ ..+++|..+......+... ..+.++|+||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~--nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAA--NYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeec--ccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 6899999999999999999999874222 2234555555544444221 258999999998543
Q ss_pred CCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 023214 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (285)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (285)
.....++.. +......+|++++|+++.
T Consensus 81 ~~g~glg~~----fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQ----FLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHH----HHHHHHhCCEEEEEEeCC
Confidence 222233333 333456779999999973
No 284
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=4e-10 Score=98.56 Aligned_cols=151 Identities=14% Similarity=0.145 Sum_probs=99.8
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC-
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF- 80 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~- 80 (285)
|-.++|.+++|-+.-. -||+||||||+|||||+..|+|...|..|......+..+..+.+.. +..++.-.||--+
T Consensus 598 gqkpLFkkldFGiDmd--SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~--~E~L~~Eetp~EyL 673 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMD--SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHA--NEALNGEETPVEYL 673 (807)
T ss_pred CCCchhhccccccccc--ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhh--HHhhccccCHHHHH
Confidence 3468899999888887 7999999999999999999999998877665555555555554433 2334444444211
Q ss_pred --CCCCCcHHHHHHHHHHHhhccC--CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCC
Q 023214 81 --DFSAGSEFVGKEIVKCIGMAKD--GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDN 153 (285)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~ 153 (285)
.|.... +.-+.++-...- .+|.+-+. .+|++.+.++.+....++.+ .++|+ +|.+|+.+-
T Consensus 674 qr~FNlpy----q~ARK~LG~fGL~sHAHTikik-----dLSGGQKaRValaeLal~~P---DvlILDEPTNNLDIESI- 740 (807)
T KOG0066|consen 674 QRKFNLPY----QEARKQLGTFGLASHAHTIKIK-----DLSGGQKARVALAELALGGP---DVLILDEPTNNLDIESI- 740 (807)
T ss_pred HHhcCCCh----HHHHHHhhhhhhhhccceEeee-----ecCCcchHHHHHHHHhcCCC---CEEEecCCCCCcchhhH-
Confidence 000011 122223222111 23443332 67778888888888888765 67777 899998776
Q ss_pred hhcHHHHhhhcCCchhH
Q 023214 154 DETLEDYLGRECPKPLK 170 (285)
Q Consensus 154 ~~~l~~~l~~~~~~~l~ 170 (285)
..+.+++..+.+.++.
T Consensus 741 -DALaEAIney~GgVi~ 756 (807)
T KOG0066|consen 741 -DALAEAINEYNGGVIM 756 (807)
T ss_pred -HHHHHHHHhccCcEEE
Confidence 7788888878777666
No 285
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.05 E-value=7.1e-10 Score=91.30 Aligned_cols=44 Identities=27% Similarity=0.274 Sum_probs=39.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G 55 (213)
T cd03259 12 SVRALDDLSLTVEPG--EFLALLGPSGCGKTTLLRLIAGLERPDSG 55 (213)
T ss_pred CeeeecceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 356899999999999 89999999999999999999998766554
No 286
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.05 E-value=8.5e-10 Score=85.37 Aligned_cols=121 Identities=14% Similarity=0.102 Sum_probs=76.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.++|.++|.+|+|||||+|.......... ....+........+... .-..+.||||.|...|. +.-
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~q--ykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFq-----------sLg 75 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQ--YKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQ-----------SLG 75 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHH--hccccchhheeeEEEEcCeEEEEEEEecccHHHhh-----------hcc
Confidence 48999999999999999999987664211 11111111111222221 12347899999976442 122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHH--HHHHHh-CccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALH--SLQTLF-GKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~--~~~~~~-~~~~~~~~iil~nk~D~~~~ 152 (285)
...|+++|.+++|+|+..+-+.+....|+ ++...- ..+...|+||+.||.|....
T Consensus 76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence 35589999999999997665555443333 333332 22345799999999997653
No 287
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.04 E-value=6.8e-10 Score=85.60 Aligned_cols=43 Identities=33% Similarity=0.369 Sum_probs=38.2
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~ 47 (285)
+.+++.++++.+.+| ..++|+|+||+|||||+++|+|...+..
T Consensus 12 ~~~~l~~~~~~~~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~ 54 (144)
T cd03221 12 GKLLLKDISLTINPG--DRIGLVGRNGAGKSTLLKLIAGELEPDE 54 (144)
T ss_pred CceEEEeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCc
Confidence 346889999999999 8999999999999999999999876544
No 288
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.04 E-value=1.4e-10 Score=99.91 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=87.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
+..+.+++|+.+.+| ..++|+|+||||||||+++|+|...+.+|.... +...... ...+ ...--++.+.|.+..
T Consensus 17 ~~~~l~~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~-~~~igy~~~~~~~~~ 91 (293)
T COG1131 17 DKTALDGVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKV-RRRIGYVPQEPSLYP 91 (293)
T ss_pred CCEEEeceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHH-HhheEEEccCCCCCc
Confidence 367899999999999 899999999999999999999998775543210 0000000 0000 122356777787654
Q ss_pred CCCCcHHHHHHHHHHHhhccCCc--------cEEEEEE------e-CCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214 82 FSAGSEFVGKEIVKCIGMAKDGI--------HAVLVVF------S-VRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--- 143 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~v~------~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--- 143 (285)
. .+.. +...++...+... +-++-.+ + .-..+|.+.++++..+..+++.+ .++|+
T Consensus 92 ~-lT~~----e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P---~lliLDEP 163 (293)
T COG1131 92 E-LTVR----ENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDP---ELLILDEP 163 (293)
T ss_pred c-ccHH----HHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCC---CEEEECCC
Confidence 2 2322 2222322222211 0011001 1 11369999999999999988876 67777
Q ss_pred EeCCCCCCCChhcHHHHhh
Q 023214 144 FTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~ 162 (285)
+|-+|-... ..+.+.+.
T Consensus 164 t~GLDp~~~--~~~~~~l~ 180 (293)
T COG1131 164 TSGLDPESR--REIWELLR 180 (293)
T ss_pred CcCCCHHHH--HHHHHHHH
Confidence 788886554 44545444
No 289
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.04 E-value=9.9e-10 Score=92.95 Aligned_cols=143 Identities=13% Similarity=0.193 Sum_probs=81.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (285)
+..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|....+... . ..+ ...-.++.+.|.+...
T Consensus 24 ~~~il~~isl~i~~G--e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~-~----~~~-~~~i~~v~q~~~l~~~ 95 (257)
T PRK11247 24 ERTVLNQLDLHIPAG--QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP-L----AEA-REDTRLMFQDARLLPW 95 (257)
T ss_pred CcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE-H----HHh-hCceEEEecCccCCCC
Confidence 456899999999999 8999999999999999999999886655432110000 0 000 0111233334433321
Q ss_pred CCCcHH--------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCC
Q 023214 83 SAGSEF--------VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELE 151 (285)
Q Consensus 83 ~~~~~~--------~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~ 151 (285)
....+. ....+...+... +... +.-.....+|+++++++..++.+...+ +++++ ++.+|...
T Consensus 96 ~tv~enl~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGqkqrl~laraL~~~p---~lllLDEPt~~LD~~~ 168 (257)
T PRK11247 96 KKVIDNVGLGLKGQWRDAALQALAAV--GLAD--RANEWPAALSGGQKQRVALARALIHRP---GLLLLDEPLGALDALT 168 (257)
T ss_pred CcHHHHHHhcccchHHHHHHHHHHHc--CChh--HhcCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHH
Confidence 000000 011122222111 1111 111112479999999999999887765 67777 88888665
Q ss_pred CChhcHHHHhh
Q 023214 152 DNDETLEDYLG 162 (285)
Q Consensus 152 ~~~~~l~~~l~ 162 (285)
. ..+.+.+.
T Consensus 169 ~--~~l~~~L~ 177 (257)
T PRK11247 169 R--IEMQDLIE 177 (257)
T ss_pred H--HHHHHHHH
Confidence 4 45555553
No 290
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.5e-09 Score=79.72 Aligned_cols=119 Identities=12% Similarity=0.085 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.++.++|.+.+|||||+..-++....+.-.+..|+..+.... ........+.++||.|... ++.....
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTv-yr~~kRiklQiwDTagqEr-----------yrtiTTa 89 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-YRSDKRIKLQIWDTAGQER-----------YRTITTA 89 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEe-eecccEEEEEEEecccchh-----------hhHHHHH
Confidence 589999999999999999999877543333333443332211 1111245689999999752 2333445
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++++++++++++|..+.-+-.. ..+...++...-.. .++|++.||+|+.+.
T Consensus 90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDSE 141 (193)
T ss_pred HhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCccc
Confidence 6899999999999864433333 23333444332223 389999999997764
No 291
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=2.1e-09 Score=85.56 Aligned_cols=43 Identities=30% Similarity=0.278 Sum_probs=38.4
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++++++.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 13 ~~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G 55 (173)
T cd03230 13 KTALDDISLTVEKG--EIYGLLGPNGAGKTTLIKIILGLLKPDSG 55 (173)
T ss_pred eeeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 46889999999999 89999999999999999999998765544
No 292
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.03 E-value=2.1e-08 Score=89.75 Aligned_cols=149 Identities=19% Similarity=0.200 Sum_probs=106.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC--------------------------------------------
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-------------------------------------------- 52 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-------------------------------------------- 52 (285)
.+.+||++||.-.+||||.+.+|+....||.|+...
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 344899999999999999999999888888765432
Q ss_pred --------CcceeEEEEEEEeeCC---ceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCH
Q 023214 53 --------GVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ 119 (285)
Q Consensus 53 --------~~t~~~~~~~~~~~~~---~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~ 119 (285)
|.|++....+... .| ..++++|.||...+.. ...+....|......++..|+++++++.-+ +++.
T Consensus 386 RMr~sVr~GkTVSnEvIsltV-KGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDA 463 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNV-KGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDA 463 (980)
T ss_pred HHHhcccCCcccccceEEEee-cCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccch
Confidence 7777777776666 33 5699999999986532 234455666666667788999999999876 6666
Q ss_pred HHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC---hhcHHHHhhhcCCchhH
Q 023214 120 EEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (285)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~---~~~l~~~l~~~~~~~l~ 170 (285)
+....-.++..+ . +....+|+|+||.|+...+ ...+..++. ..-.+..
T Consensus 464 ERSnVTDLVsq~-D-P~GrRTIfVLTKVDlAEknlA~PdRI~kIle-GKLFPMK 514 (980)
T KOG0447|consen 464 ERSIVTDLVSQM-D-PHGRRTIFVLTKVDLAEKNVASPSRIQQIIE-GKLFPMK 514 (980)
T ss_pred hhhhHHHHHHhc-C-CCCCeeEEEEeecchhhhccCCHHHHHHHHh-cCccchh
Confidence 555555555543 2 3445899999999987543 355666665 3444443
No 293
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=1.3e-09 Score=91.06 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=39.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G 55 (235)
T cd03261 12 GRTVLKGVDLDVRRG--EILAIIGPSGSGKSTLLRLIVGLLRPDSG 55 (235)
T ss_pred CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 356899999999999 89999999999999999999998876554
No 294
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.03 E-value=1.5e-09 Score=87.76 Aligned_cols=118 Identities=24% Similarity=0.173 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|.+|+|||+|...+++... .....+...+.......+. .....+.|+||+|...+... ...
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f-~~~y~ptied~y~k~~~v~-~~~~~l~ilDt~g~~~~~~~-----------~~~ 70 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRF-VEDYDPTIEDSYRKELTVD-GEVCMLEILDTAGQEEFSAM-----------RDL 70 (196)
T ss_pred eEEEEECCCCCCcchheeeeccccc-ccccCCCccccceEEEEEC-CEEEEEEEEcCCCcccChHH-----------HHH
Confidence 7999999999999999988886663 3332222222221112221 12345779999995543221 123
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
+....|+|++|++++++-|..+...+ ..+... ......|+++|.||.|...
T Consensus 71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~-~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRV-KGRDDVPIILVGNKCDLER 122 (196)
T ss_pred hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHh-hCcCCCCEEEEEEcccchh
Confidence 46677999999999878777765443 344232 2223359999999999875
No 295
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=1.5e-09 Score=86.77 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=38.9
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++++.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 12 ~~~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (178)
T cd03229 12 QKTVLNDVSLNIEAG--EIVALLGPSGSGKSTLLRCIAGLEEPDSG 55 (178)
T ss_pred CeEEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 346889999999999 89999999999999999999998765544
No 296
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.02 E-value=1.2e-09 Score=94.82 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=83.1
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCC
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (285)
++.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|.... +..... ..... ...-.++.+.|.+.
T Consensus 4 ~~~~~l~~vs~~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~-~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 4 GDFKAVDGVNFKVREG--EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR--EPRKV-RRSIGIVPQYASVD 78 (302)
T ss_pred CCeeEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc--CHHHH-HhhcEEecCCCCCC
Confidence 3467899999999999 899999999999999999999988766543211 100000 00000 00112344555544
Q ss_pred CCCCCcHHHH---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214 81 DFSAGSEFVG---------------KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV-- 143 (285)
Q Consensus 81 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil-- 143 (285)
.. .+..+.. ..+...+.. + +... +.-.....+|.++++++.+++.++..+ +++++
T Consensus 79 ~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p---~lllLDE 150 (302)
T TIGR01188 79 ED-LTGRENLEMMGRLYGLPKDEAEERAEELLEL-F-ELGE--AADRPVGTYSGGMRRRLDIAASLIHQP---DVLFLDE 150 (302)
T ss_pred CC-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-c-CChh--HhCCchhhCCHHHHHHHHHHHHHhcCC---CEEEEeC
Confidence 22 1111100 011111111 1 1100 001111469999999999999888765 67777
Q ss_pred -EeCCCCCCCChhcHHHHhhh
Q 023214 144 -FTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 144 -~nk~D~~~~~~~~l~~~l~~ 163 (285)
++.+|-... ..+.+++..
T Consensus 151 Pt~gLD~~~~--~~l~~~l~~ 169 (302)
T TIGR01188 151 PTTGLDPRTR--RAIWDYIRA 169 (302)
T ss_pred CCcCCCHHHH--HHHHHHHHH
Confidence 788886555 555555543
No 297
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=9.8e-10 Score=90.27 Aligned_cols=44 Identities=27% Similarity=0.262 Sum_probs=39.0
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~l~~v~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (210)
T cd03269 12 RVTALDDISFSVEKG--EIFGLLGPNGAGKTTTIRMILGIILPDSG 55 (210)
T ss_pred CEEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 356889999999999 89999999999999999999998765554
No 298
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=4.2e-08 Score=84.12 Aligned_cols=128 Identities=18% Similarity=0.272 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEE------------Eee---------------------
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT------------VLK--------------------- 66 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~------------~~~--------------------- 66 (285)
+-|+++|..+.|||||+|.|++...+.....+.++|-.....-. ...
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 79999999999999999999999876443333332222111100 000
Q ss_pred ---C---CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCe
Q 023214 67 ---D---GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDY 139 (285)
Q Consensus 67 ---~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (285)
. =..++||||||+.+...-.-...-.+...+......+|.|++++|+. -.++.+-...+..++ |... .
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~Ed--k 213 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHED--K 213 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCcc--e
Confidence 0 01388999999986432211111222233333356779999999983 234555555555554 3333 7
Q ss_pred EEEEEeCCCCCCC
Q 023214 140 MIVVFTGGDELED 152 (285)
Q Consensus 140 ~iil~nk~D~~~~ 152 (285)
+-||+||+|....
T Consensus 214 iRVVLNKADqVdt 226 (532)
T KOG1954|consen 214 IRVVLNKADQVDT 226 (532)
T ss_pred eEEEeccccccCH
Confidence 8899999998876
No 299
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.02 E-value=4.5e-10 Score=92.36 Aligned_cols=43 Identities=30% Similarity=0.281 Sum_probs=38.9
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
..+++++++++.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 14 ~~il~~vs~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G 56 (211)
T cd03225 14 RPALDDISLTIKKG--EFVLIVGPNGSGKSTLLRLLNGLLGPTSG 56 (211)
T ss_pred eeeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 56899999999999 89999999999999999999998766554
No 300
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.02 E-value=1.6e-09 Score=89.31 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=39.2
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 14 ~~~il~~is~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 57 (214)
T TIGR02673 14 GVAALHDVSLHIRKG--EFLFLTGPSGAGKTTLLKLLYGALTPSRG 57 (214)
T ss_pred CceeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 356899999999999 89999999999999999999998765554
No 301
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=1.2e-09 Score=92.33 Aligned_cols=142 Identities=17% Similarity=0.181 Sum_probs=80.7
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|.... +.... .. .....++.+.|.+..
T Consensus 13 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~------~~-~~~~~~v~q~~~~~~ 83 (255)
T PRK11248 13 GKPALEDINLTLESG--ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE------GP-GAERGVVFQNEGLLP 83 (255)
T ss_pred CeeeEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC------CC-CCcEEEEeCCCccCC
Confidence 356889999999999 899999999999999999999988765543211 00000 00 001122333343332
Q ss_pred CCCCc--------------HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214 82 FSAGS--------------EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F 144 (285)
Q Consensus 82 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~ 144 (285)
..... ......+...+... +... +.-.....+|+++++++.+++.+...+ +++++ +
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGq~qrl~laral~~~p---~lllLDEPt 156 (255)
T PRK11248 84 WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKV--GLEG--AEKRYIWQLSGGQRQRVGIARALAANP---QLLLLDEPF 156 (255)
T ss_pred CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc--CChh--HhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCC
Confidence 10000 00111111122111 1111 011112479999999999999887765 67777 7
Q ss_pred eCCCCCCCChhcHHHHhh
Q 023214 145 TGGDELEDNDETLEDYLG 162 (285)
Q Consensus 145 nk~D~~~~~~~~l~~~l~ 162 (285)
+.+|.... ..+.+.+.
T Consensus 157 ~~LD~~~~--~~l~~~L~ 172 (255)
T PRK11248 157 GALDAFTR--EQMQTLLL 172 (255)
T ss_pred ccCCHHHH--HHHHHHHH
Confidence 88886555 55555554
No 302
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.01 E-value=1.7e-09 Score=89.30 Aligned_cols=42 Identities=29% Similarity=0.325 Sum_probs=38.2
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 17 ~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 58 (216)
T TIGR00960 17 PALDNLNFHITKG--EMVFLVGHSGAGKSTFLKLILGIEKPTRG 58 (216)
T ss_pred eEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 5899999999999 89999999999999999999998766554
No 303
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.01 E-value=2.8e-10 Score=88.25 Aligned_cols=62 Identities=31% Similarity=0.362 Sum_probs=38.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (285)
..++|+|++|+|||||+|.|++.....++.. ...+|+....+.. +....||||||+.++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l----~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL----PDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE----TTSEEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec----CCCcEEEECCCCCccccc
Confidence 6999999999999999999999865544321 1123334333332 335689999999887654
No 304
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=1.4e-09 Score=90.08 Aligned_cols=44 Identities=16% Similarity=0.066 Sum_probs=39.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++++..| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G 55 (220)
T cd03265 12 DFEAVRGVSFRVRRG--EIFGLLGPNGAGKTTTIKMLTTLLKPTSG 55 (220)
T ss_pred CEEeeeceeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 456899999999999 89999999999999999999998766554
No 305
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=4.3e-10 Score=105.04 Aligned_cols=153 Identities=11% Similarity=0.047 Sum_probs=85.6
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee--CCceEEEEeCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLF 80 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~ 80 (285)
+..+++++|+.+..| ..++|+|+||+|||||+++|+|...+.+|.........+.+..+... -....++.|...+.
T Consensus 331 ~~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~ 408 (530)
T PRK15064 331 NGPLFKNLNLLLEAG--ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQW 408 (530)
T ss_pred CceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHh
Confidence 356889999999999 89999999999999999999998766554322111111222211110 00001111110000
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhcH
Q 023214 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDETL 157 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~l 157 (285)
...... ...+...+... +... -+.-.....+|+++++++.+++.+...+ +++++ ++.+|.... ..+
T Consensus 409 ~~~~~~---~~~~~~~l~~~--~l~~-~~~~~~~~~LSgGq~qrv~la~al~~~p---~lllLDEPt~~LD~~~~--~~l 477 (530)
T PRK15064 409 RQEGDD---EQAVRGTLGRL--LFSQ-DDIKKSVKVLSGGEKGRMLFGKLMMQKP---NVLVMDEPTNHMDMESI--ESL 477 (530)
T ss_pred ccCCcc---HHHHHHHHHHc--CCCh-hHhcCcccccCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHH
Confidence 000000 11111222111 0000 0011112479999999999999887655 77777 899997766 777
Q ss_pred HHHhhhcCCch
Q 023214 158 EDYLGRECPKP 168 (285)
Q Consensus 158 ~~~l~~~~~~~ 168 (285)
.+.+....++.
T Consensus 478 ~~~l~~~~~tv 488 (530)
T PRK15064 478 NMALEKYEGTL 488 (530)
T ss_pred HHHHHHCCCEE
Confidence 77777654433
No 306
>PLN03073 ABC transporter F family; Provisional
Probab=98.99 E-value=3e-10 Score=108.77 Aligned_cols=152 Identities=15% Similarity=0.107 Sum_probs=87.0
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC---
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF--- 80 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~--- 80 (285)
..+++++|+.+..| .+++|+|+||+|||||+++|+|...+..|...........+..+... ..+.+.+++-+.
T Consensus 522 ~~il~~vsl~i~~G--e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~--~~l~~~~~~~~~~~~ 597 (718)
T PLN03073 522 PLLFKNLNFGIDLD--SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV--DGLDLSSNPLLYMMR 597 (718)
T ss_pred CeeEeccEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc--ccCCcchhHHHHHHH
Confidence 45899999999999 89999999999999999999998876665432221122223222110 001111110000
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhcH
Q 023214 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDETL 157 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~l 157 (285)
...... ...+...+... +...-..--.+ ..+|+++++++.+++.++..+ +++|+ +|++|.... ..+
T Consensus 598 ~~~~~~---~~~i~~~L~~~--gl~~~~~~~~~-~~LSgGqkqRvaLAraL~~~p---~lLLLDEPT~~LD~~s~--~~l 666 (718)
T PLN03073 598 CFPGVP---EQKLRAHLGSF--GVTGNLALQPM-YTLSGGQKSRVAFAKITFKKP---HILLLDEPSNHLDLDAV--EAL 666 (718)
T ss_pred hcCCCC---HHHHHHHHHHC--CCChHHhcCCc-cccCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHH
Confidence 000000 11222222211 11100001112 479999999999999887765 78888 999997765 666
Q ss_pred HHHhhhcCCchhH
Q 023214 158 EDYLGRECPKPLK 170 (285)
Q Consensus 158 ~~~l~~~~~~~l~ 170 (285)
.+.+..+.++.+.
T Consensus 667 ~~~L~~~~gtvIi 679 (718)
T PLN03073 667 IQGLVLFQGGVLM 679 (718)
T ss_pred HHHHHHcCCEEEE
Confidence 6766654444333
No 307
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.99 E-value=2e-09 Score=93.47 Aligned_cols=146 Identities=14% Similarity=0.073 Sum_probs=82.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
+..+++++|+++.+| ..++|+|+||+|||||+++|+|...+.+|.... +..... ..... ...-.++.+.|.+..
T Consensus 16 ~~~~l~~vsl~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~-~~~i~~v~q~~~~~~ 90 (303)
T TIGR01288 16 DKVVVNDLSFTIARG--ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS--RARLA-RVAIGVVPQFDNLDP 90 (303)
T ss_pred CeEEEcceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc--cHHHH-hhcEEEEeccccCCc
Confidence 456899999999999 899999999999999999999988665543211 100000 00000 011123344444432
Q ss_pred CCCCcHHHH---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214 82 FSAGSEFVG---------------KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--- 143 (285)
Q Consensus 82 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--- 143 (285)
. .+..+.. ..+...+. .+ +... ..-.....+|+++++++.+++.+...+ +++++
T Consensus 91 ~-~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~-~~-~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p---~lllLDEP 162 (303)
T TIGR01288 91 E-FTVRENLLVFGRYFGMSTREIEAVIPSLLE-FA-RLES--KADVRVALLSGGMKRRLTLARALINDP---QLLILDEP 162 (303)
T ss_pred C-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HC-CChh--HhcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEeCC
Confidence 1 1111100 01111111 01 1100 001112479999999999999887765 67777
Q ss_pred EeCCCCCCCChhcHHHHhhh
Q 023214 144 FTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~ 163 (285)
++.+|.... ..+.+.+..
T Consensus 163 t~gLD~~~~--~~l~~~l~~ 180 (303)
T TIGR01288 163 TTGLDPHAR--HLIWERLRS 180 (303)
T ss_pred CcCCCHHHH--HHHHHHHHH
Confidence 888886655 556565543
No 308
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.99 E-value=2.1e-09 Score=87.92 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=39.1
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++++.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 13 ~~~l~~v~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 55 (205)
T cd03226 13 TEILDDLSLDLYAG--EIIALTGKNGAGKTTLAKILAGLIKESSG 55 (205)
T ss_pred CceeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 56899999999999 89999999999999999999998876554
No 309
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.99 E-value=6.7e-10 Score=92.91 Aligned_cols=44 Identities=27% Similarity=0.232 Sum_probs=39.0
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 55 (236)
T cd03219 12 GLVALDDVSFSVRPG--EIHGLIGPNGAGKTTLFNLISGFLRPTSG 55 (236)
T ss_pred CEEEecCceEEecCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 345889999999999 89999999999999999999998766554
No 310
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.99 E-value=3.2e-09 Score=85.85 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=40.0
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++..+++++|+++..| ..++|+|+||+|||||+++|+|...+..|
T Consensus 3 ~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G 47 (190)
T TIGR01166 3 GGPEVLKGLNFAAERG--EVLALLGANGAGKSTLLLHLNGLLRPQSG 47 (190)
T ss_pred CccceecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3467899999999999 89999999999999999999998766554
No 311
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.98 E-value=2.6e-09 Score=87.41 Aligned_cols=44 Identities=32% Similarity=0.360 Sum_probs=39.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 10 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (206)
T TIGR03608 10 DKIILDDLNLTIEKG--KMYAIIGESGSGKSTLLNIIGLLEKFDSG 53 (206)
T ss_pred CEEEEeceEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 456899999999999 89999999999999999999998766554
No 312
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.98 E-value=2e-09 Score=88.55 Aligned_cols=44 Identities=32% Similarity=0.342 Sum_probs=39.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03301 12 NVTALDDLNLDIADG--EFVVLLGPSGCGKTTTLRMIAGLEEPTSG 55 (213)
T ss_pred CeeeeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 457899999999999 89999999999999999999998766554
No 313
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.98 E-value=2.4e-09 Score=88.07 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=39.1
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 12 ~~~~l~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03262 12 DFHVLKGIDLTVKKG--EVVVIIGPSGSGKSTLLRCINLLEEPDSG 55 (213)
T ss_pred CeEeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 356889999999999 89999999999999999999998766554
No 314
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.98 E-value=4.6e-10 Score=105.36 Aligned_cols=155 Identities=17% Similarity=0.051 Sum_probs=88.1
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe-eCCceEEEEeCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFD 81 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~ 81 (285)
+..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|....+....+.+..+.. .-...+++.+...+..
T Consensus 336 ~~~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~ 413 (556)
T PRK11819 336 DRLLIDDLSFSLPPG--GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGL 413 (556)
T ss_pred CeeeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhc
Confidence 346899999999999 8999999999999999999999887665543222111222222211 0001111111110000
Q ss_pred -CC-CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhc
Q 023214 82 -FS-AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDET 156 (285)
Q Consensus 82 -~~-~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~ 156 (285)
.. ..... ......+.. + +.... ..-..-..+|+++++++.+++.+...+ +++++ ++++|.... ..
T Consensus 414 ~~~~~~~~~--~~~~~~l~~-~-~l~~~-~~~~~~~~LSgG~~qrv~la~al~~~p---~lllLDEPt~~LD~~~~--~~ 483 (556)
T PRK11819 414 DIIKVGNRE--IPSRAYVGR-F-NFKGG-DQQKKVGVLSGGERNRLHLAKTLKQGG---NVLLLDEPTNDLDVETL--RA 483 (556)
T ss_pred ccccccccH--HHHHHHHHh-C-CCChh-HhcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HH
Confidence 00 00000 011111111 1 11000 011111479999999999999887765 78887 999998777 78
Q ss_pred HHHHhhhcCCchh
Q 023214 157 LEDYLGRECPKPL 169 (285)
Q Consensus 157 l~~~l~~~~~~~l 169 (285)
+.+++....++.+
T Consensus 484 l~~~l~~~~~tvi 496 (556)
T PRK11819 484 LEEALLEFPGCAV 496 (556)
T ss_pred HHHHHHhCCCeEE
Confidence 8888876655433
No 315
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.98 E-value=5e-09 Score=84.95 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=38.7
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--ccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR--AFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~--~~~~~ 48 (285)
.++++++++.+.+| ..++|+|+||+|||||+++|+|.. .+..|
T Consensus 22 ~~~l~~~~~~i~~G--e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G 66 (194)
T cd03213 22 KQLLKNVSGKAKPG--ELTAIMGPSGAGKSTLLNALAGRRTGLGVSG 66 (194)
T ss_pred ccceecceEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCce
Confidence 57899999999999 899999999999999999999987 55443
No 316
>PRK10908 cell division protein FtsE; Provisional
Probab=98.97 E-value=3.2e-09 Score=87.96 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=39.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (222)
T PRK10908 14 GRQALQGVTFHMRPG--EMAFLTGHSGAGKSTLLKLICGIERPSAG 57 (222)
T ss_pred CCeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 356899999999999 89999999999999999999998876554
No 317
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.97 E-value=3.4e-09 Score=90.01 Aligned_cols=43 Identities=30% Similarity=0.254 Sum_probs=38.6
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 37 ~~il~~is~~i~~G--e~~~liG~NGsGKSTLlk~L~Gl~~p~~G 79 (264)
T PRK13546 37 FFALDDISLKAYEG--DVIGLVGINGSGKSTLSNIIGGSLSPTVG 79 (264)
T ss_pred eEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 45788999999999 89999999999999999999998876554
No 318
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.97 E-value=2.5e-09 Score=88.11 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=39.5
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+..| ..++|+|+||+|||||+++|+|...+..|
T Consensus 23 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G 66 (214)
T PRK13543 23 EEPVFGPLDFHVDAG--EALLVQGDNGAGKTTLLRVLAGLLHVESG 66 (214)
T ss_pred CceeeecceEEECCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence 456899999999999 89999999999999999999998776554
No 319
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.97 E-value=6.5e-10 Score=104.27 Aligned_cols=155 Identities=17% Similarity=0.066 Sum_probs=88.8
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFD 81 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~ 81 (285)
+..+++++|+.+..| ..++|+|+||+|||||+++|+|...+.+|....+....+.+..+... .....++.|..-+..
T Consensus 334 ~~~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~ 411 (552)
T TIGR03719 334 DKLLIDDLSFKLPPG--GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGL 411 (552)
T ss_pred CeeeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhc
Confidence 346889999999999 89999999999999999999998876655432221112222222110 001111211110000
Q ss_pred --CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhc
Q 023214 82 --FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDET 156 (285)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~ 156 (285)
....... ......+.. + +.... ..-..-..+|+++++++.+++.+...+ +++++ ++++|.... ..
T Consensus 412 ~~~~~~~~~--~~~~~~l~~-~-~l~~~-~~~~~~~~LSgGe~qrv~la~al~~~p---~lllLDEPt~~LD~~~~--~~ 481 (552)
T TIGR03719 412 DIIQLGKRE--VPSRAYVGR-F-NFKGS-DQQKKVGQLSGGERNRVHLAKTLKSGG---NVLLLDEPTNDLDVETL--RA 481 (552)
T ss_pred cccccCcch--HHHHHHHHh-C-CCChh-HhcCchhhCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHH--HH
Confidence 0000000 011111111 1 11100 011111479999999999999887765 78888 999997776 78
Q ss_pred HHHHhhhcCCchh
Q 023214 157 LEDYLGRECPKPL 169 (285)
Q Consensus 157 l~~~l~~~~~~~l 169 (285)
+.+.+....++.+
T Consensus 482 l~~~l~~~~~~vi 494 (552)
T TIGR03719 482 LEEALLEFAGCAV 494 (552)
T ss_pred HHHHHHHCCCeEE
Confidence 8888876555433
No 320
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.97 E-value=1.3e-09 Score=101.92 Aligned_cols=151 Identities=17% Similarity=0.089 Sum_probs=82.9
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccce---------eEEEEEEEeeCCceEEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTS---------TCEMQRTVLKDGQVVNV 73 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~---------~~~~~~~~~~~~~~~~l 73 (285)
+++++|+|+++++| .+++++|++|+|||||++.|+|...+..|.... +... .+.+.++.. .=-+-++
T Consensus 348 ~~vL~~isl~i~~G--~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~-~lF~~TI 424 (529)
T TIGR02868 348 PPVLDGVSLDLPPG--ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDA-HLFDTTV 424 (529)
T ss_pred CceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCc-ccccccH
Confidence 45899999999999 899999999999999999999988776654321 1100 111111110 0000011
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHH--hhccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCC
Q 023214 74 IDTPGLFDFSAGSEFVGKEIVKCI--GMAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGG 147 (285)
Q Consensus 74 iDtpG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~ 147 (285)
-|.--++.+..+++++.+-+..+- .....-+++.--.+ +.+..+|+++++++...+..+.++ +++++ ++..
T Consensus 425 ~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~---~iliLDE~TSaL 501 (529)
T TIGR02868 425 RDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA---PILLLDEPTEHL 501 (529)
T ss_pred HHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccC
Confidence 111111112222333322222110 00001123322222 334579999999999999998766 78877 6777
Q ss_pred CCCCCChhcHHHHhh
Q 023214 148 DELEDNDETLEDYLG 162 (285)
Q Consensus 148 D~~~~~~~~l~~~l~ 162 (285)
|.... ..+.+.+.
T Consensus 502 D~~te--~~I~~~l~ 514 (529)
T TIGR02868 502 DAGTE--SELLEDLL 514 (529)
T ss_pred CHHHH--HHHHHHHH
Confidence 75443 44444443
No 321
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.96 E-value=2.6e-09 Score=88.66 Aligned_cols=45 Identities=27% Similarity=0.288 Sum_probs=39.9
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
|+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 33 ~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G 77 (224)
T cd03220 33 GEFWALKDVSFEVPRG--ERIGLIGRNGAGKSTLLRLLAGIYPPDSG 77 (224)
T ss_pred CCeEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4567899999999999 89999999999999999999998765543
No 322
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=6e-10 Score=99.09 Aligned_cols=141 Identities=23% Similarity=0.163 Sum_probs=86.5
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
|++.+..+-++....| +|.+|||+||+|||||+++|....+ + ..++-.. +.=.|||-..+
T Consensus 91 G~k~LL~~a~L~L~~G--rRYGLvGrNG~GKsTLLRaia~~~v--~---~f~veqE-------------~~g~~t~~~~~ 150 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRG--RRYGLVGRNGIGKSTLLRAIANGQV--S---GFHVEQE-------------VRGDDTEALQS 150 (582)
T ss_pred cchhhhcCCceeeecc--cccceeCCCCCcHHHHHHHHHhcCc--C---ccCchhh-------------eeccchHHHhh
Confidence 6677888889999999 9999999999999999999986222 1 1111111 11122222211
Q ss_pred CCCCcHH---------------HHHHHHH-HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214 82 FSAGSEF---------------VGKEIVK-CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV-- 143 (285)
Q Consensus 82 ~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil-- 143 (285)
...++.. ...++.. .+.-..-.++ .-.. +...+|++=+.++.+.+.+|..+ -++++
T Consensus 151 ~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~e--mq~~-pt~slSGGWrMrlaLARAlf~~p---DlLLLDE 224 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPE--MQLQ-PTKSLSGGWRMRLALARALFAKP---DLLLLDE 224 (582)
T ss_pred hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHH--HHhc-cccccCcchhhHHHHHHHHhcCC---CEEeecC
Confidence 1111100 0111111 1110000111 1122 23479999999999999999875 56666
Q ss_pred -EeCCCCCCCChhcHHHHhhhcCCchhH
Q 023214 144 -FTGGDELEDNDETLEDYLGRECPKPLK 170 (285)
Q Consensus 144 -~nk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (285)
+||+|...- ..+++||...+.+.|.
T Consensus 225 PTNhLDv~av--~WLe~yL~t~~~T~li 250 (582)
T KOG0062|consen 225 PTNHLDVVAV--AWLENYLQTWKITSLI 250 (582)
T ss_pred CcccchhHHH--HHHHHHHhhCCceEEE
Confidence 999998776 8999999977766666
No 323
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.96 E-value=3.8e-09 Score=88.78 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=39.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 57 (243)
T TIGR02315 14 GKQALKNINLNINPG--EFVAIIGPSGAGKSTLLRCINRLVEPSSG 57 (243)
T ss_pred CcceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence 456899999999999 89999999999999999999998866554
No 324
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.96 E-value=1.1e-09 Score=91.29 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=39.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 55 (232)
T cd03218 12 KRKVVNGVSLSVKQG--EIVGLLGPNGAGKTTTFYMIVGLVKPDSG 55 (232)
T ss_pred CEEeeccceeEecCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 346889999999999 89999999999999999999998876554
No 325
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.96 E-value=9.5e-10 Score=90.55 Aligned_cols=44 Identities=27% Similarity=0.356 Sum_probs=39.2
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 11 ~~~~l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G 54 (213)
T cd03235 11 GHPVLEDVSFEVKPG--EFLAIVGPNGAGKSTLLKAILGLLKPTSG 54 (213)
T ss_pred CEEeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 346889999999999 89999999999999999999998876554
No 326
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.96 E-value=1.3e-09 Score=88.97 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=39.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+..+++++++.+.+| .+++|+|+||+|||||++.|+|...+.+|
T Consensus 12 ~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (201)
T cd03231 12 GRALFSGLSFTLAAG--EALQVTGPNGSGKTTLLRILAGLSPPLAG 55 (201)
T ss_pred CceeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 456789999999999 89999999999999999999998866554
No 327
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=3.8e-09 Score=88.74 Aligned_cols=44 Identities=27% Similarity=0.252 Sum_probs=39.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (242)
T PRK11124 14 AHQALFDITLDCPQG--ETLVLLGPSGAGKSSLLRVLNLLEMPRSG 57 (242)
T ss_pred CeeeEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 456899999999999 89999999999999999999998766554
No 328
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=2.8e-09 Score=84.66 Aligned_cols=42 Identities=29% Similarity=0.292 Sum_probs=38.4
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.+++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 16 ~~l~~i~~~i~~G--~~~~l~G~nGsGKstLl~~i~G~~~~~~G 57 (171)
T cd03228 16 PVLKDVSLTIKPG--EKVAIVGPSGSGKSTLLKLLLRLYDPTSG 57 (171)
T ss_pred ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence 6899999999999 89999999999999999999998876554
No 329
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.95 E-value=2.4e-09 Score=88.48 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=38.5
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++++++++++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 19 ~il~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 60 (218)
T cd03266 19 QAVDGVSFTVKPG--EVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60 (218)
T ss_pred eeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 6899999999999 89999999999999999999998766554
No 330
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.95 E-value=2e-09 Score=84.30 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=40.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (285)
.+|+++|.+|+|||||+|+|+|......+.. .+.|....... .+..+.++||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~~~----~~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQYIT----LMKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEEEE----cCCCEEEEECcCC
Confidence 7899999999999999999999876555443 34455443322 2455899999995
No 331
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=1e-09 Score=92.15 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=38.8
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (242)
T cd03295 14 KKAVNNLNLEIAKG--EFLVLIGPSGSGKTTTMKMINRLIEPTSG 56 (242)
T ss_pred ceEeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 46889999999999 89999999999999999999998766554
No 332
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.95 E-value=2.7e-09 Score=87.53 Aligned_cols=44 Identities=27% Similarity=0.282 Sum_probs=39.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~l~~~~~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (208)
T cd03268 12 KKRVLDDISLHVKKG--EIYGFLGPNGAGKTTTMKIILGLIKPDSG 55 (208)
T ss_pred CeEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 456899999999999 89999999999999999999998766554
No 333
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=4.1e-09 Score=88.46 Aligned_cols=43 Identities=26% Similarity=0.239 Sum_probs=38.9
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 14 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 56 (241)
T cd03256 14 KKALKDVSLSINPG--EFVALIGPSGAGKSTLLRCLNGLVEPTSG 56 (241)
T ss_pred cEEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 56899999999999 89999999999999999999998765554
No 334
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.95 E-value=4.2e-09 Score=91.45 Aligned_cols=146 Identities=15% Similarity=0.057 Sum_probs=83.7
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
+..+++++|+.+..| ..++|+|+||+|||||+++|+|...+.+|.... +.... ...... ...-.++.+.|++..
T Consensus 19 ~~~~l~~vsl~i~~G--ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~--~~~~~~-~~~ig~v~q~~~~~~ 93 (306)
T PRK13537 19 DKLVVDGLSFHVQRG--ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP--SRARHA-RQRVGVVPQFDNLDP 93 (306)
T ss_pred CeEEEecceEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecc--cchHHH-HhcEEEEeccCcCCC
Confidence 456889999999999 899999999999999999999988766543211 10000 000000 112244555666543
Q ss_pred CCCCcHHHHHH---------------HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214 82 FSAGSEFVGKE---------------IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--- 143 (285)
Q Consensus 82 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--- 143 (285)
. .+..+.... +...+.. + +... ..-..-..+|.+.++++..++.+...+ +++++
T Consensus 94 ~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~--~~~~~~~~LS~G~~qrl~la~aL~~~P---~lllLDEP 165 (306)
T PRK13537 94 D-FTVRENLLVFGRYFGLSAAAARALVPPLLEF-A-KLEN--KADAKVGELSGGMKRRLTLARALVNDP---DVLVLDEP 165 (306)
T ss_pred C-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-c-CCch--HhcCchhhCCHHHHHHHHHHHHHhCCC---CEEEEeCC
Confidence 2 111111111 1011110 0 0000 000111379999999999999888765 67777
Q ss_pred EeCCCCCCCChhcHHHHhhh
Q 023214 144 FTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~ 163 (285)
++.+|-... ..+.+.+..
T Consensus 166 t~gLD~~~~--~~l~~~l~~ 183 (306)
T PRK13537 166 TTGLDPQAR--HLMWERLRS 183 (306)
T ss_pred CcCCCHHHH--HHHHHHHHH
Confidence 888886655 555555543
No 335
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.95 E-value=3.5e-09 Score=88.14 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=38.4
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++++++|+++.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 24 ~~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G 65 (228)
T PRK10584 24 SILTGVELVVKRG--ETIALIGESGSGKSTLLAILAGLDDGSSG 65 (228)
T ss_pred EEEeccEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 4899999999999 89999999999999999999998866554
No 336
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.94 E-value=1.3e-09 Score=90.14 Aligned_cols=43 Identities=26% Similarity=0.210 Sum_probs=39.1
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+++| ..++|+|+||+|||||+++|+|...+..|
T Consensus 17 ~~il~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 59 (218)
T cd03255 17 VQALKGVSLSIEKG--EFVAIVGPSGSGKSTLLNILGGLDRPTSG 59 (218)
T ss_pred eeEEeeeEEEEcCC--CEEEEEcCCCCCHHHHHHHHhCCcCCCce
Confidence 46899999999999 89999999999999999999998876554
No 337
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.94 E-value=6.9e-10 Score=99.27 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=40.1
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++..+++++||.+..| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~~vL~~vs~~i~~G--eiv~liGpNGaGKSTLLk~LaGll~p~sG 58 (402)
T PRK09536 14 GDTTVLDGVDLSVREG--SLVGLVGPNGAGKTTLLRAINGTLTPTAG 58 (402)
T ss_pred CCEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 3467899999999999 89999999999999999999998876654
No 338
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=5e-09 Score=87.48 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=38.7
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++++++++++.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 19 ~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 60 (233)
T cd03258 19 TALKDVSLSVPKG--EIFGIIGRSGAGKSTLIRCINGLERPTSG 60 (233)
T ss_pred eeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 7899999999999 89999999999999999999999876554
No 339
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.94 E-value=3e-09 Score=86.57 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=39.2
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 12 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (198)
T TIGR01189 12 ERMLFEGLSFTLNAG--EALQVTGPNGIGKTTLLRILAGLLRPDSG 55 (198)
T ss_pred CEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 456889999999999 89999999999999999999998765554
No 340
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3.3e-09 Score=96.21 Aligned_cols=145 Identities=16% Similarity=0.064 Sum_probs=85.8
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-ccee-----EEEEEEEeeCCceEEEE--
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VTST-----CEMQRTVLKDGQVVNVI-- 74 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~-~t~~-----~~~~~~~~~~~~~~~li-- 74 (285)
|++...++|+++++| .++++||++|+|||||++.|+|...+..|..... ++.. .....+.|-....+.+-
T Consensus 333 g~~~l~~l~~t~~~g--~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gT 410 (559)
T COG4988 333 GKPALSDLNLTIKAG--QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGT 410 (559)
T ss_pred CCcccCCceeEecCC--cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcccccc
Confidence 347889999999999 8999999999999999999999987655432211 1000 00011112111122222
Q ss_pred --eCCCCCCCCCCcHHHHHHHHHHH-hhccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCC
Q 023214 75 --DTPGLFDFSAGSEFVGKEIVKCI-GMAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGG 147 (285)
Q Consensus 75 --DtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~ 147 (285)
|...+..+..+++++.+-+...- ....+.+++.=.++ +.+..+|+++.+++.+.+..+.+. +++++ +.|.
T Consensus 411 ireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~---~l~llDEpTA~L 487 (559)
T COG4988 411 IRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA---SLLLLDEPTAHL 487 (559)
T ss_pred HHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC---CEEEecCCccCC
Confidence 11222222223333322222221 11122244444444 446679999999999999987764 78887 8999
Q ss_pred CCCCC
Q 023214 148 DELED 152 (285)
Q Consensus 148 D~~~~ 152 (285)
|..+.
T Consensus 488 D~etE 492 (559)
T COG4988 488 DAETE 492 (559)
T ss_pred CHhHH
Confidence 97654
No 341
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=1.8e-09 Score=92.05 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=81.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEE---eeCCceEEEEeCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTV---LKDGQVVNVIDTPG 78 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~---~~~~~~~~liDtpG 78 (285)
+..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|.... +.... ...... .....-.++.+.|.
T Consensus 36 ~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~-~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 36 QTVGVNDVSLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIA-AMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CceEeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc-ccChhhhhhhhcCcEEEEecCcc
Confidence 455789999999999 899999999999999999999988765543211 10000 000000 00011223444454
Q ss_pred CCCCCCCcHHH--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE-
Q 023214 79 LFDFSAGSEFV--------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV- 143 (285)
Q Consensus 79 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil- 143 (285)
+.......+.+ ...+...+.. + +... ++-..-..+|.++++++.+++.+...+ +++++
T Consensus 113 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~--~~~~~~~~LS~Gq~qrv~lAral~~~p---~illLD 185 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQGVPRAEREERAAEALEL-V-GLEG--WEHKYPDELSGGMQQRVGLARALAVDP---DILLMD 185 (269)
T ss_pred cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-c-CCHh--HhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEc
Confidence 43211101100 0111111111 1 1111 111111479999999999999987765 67777
Q ss_pred --EeCCCCCCCChhcHHHHhh
Q 023214 144 --FTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 144 --~nk~D~~~~~~~~l~~~l~ 162 (285)
++.+|.... ..+.+.+.
T Consensus 186 EPt~~LD~~~~--~~l~~~l~ 204 (269)
T cd03294 186 EAFSALDPLIR--REMQDELL 204 (269)
T ss_pred CCCccCCHHHH--HHHHHHHH
Confidence 777776554 45555443
No 342
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.94 E-value=3.3e-09 Score=87.75 Aligned_cols=145 Identities=18% Similarity=0.173 Sum_probs=80.1
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|.... +..... ....+ ...-.++.+.|.+...
T Consensus 15 ~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~--~~~~~-~~~i~~v~q~~~~~~~ 89 (220)
T cd03263 15 KPAVDDLSLNVYKG--EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT--DRKAA-RQSLGYCPQFDALFDE 89 (220)
T ss_pred ceeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc--chHHH-hhhEEEecCcCCcccc
Confidence 57899999999999 899999999999999999999988765543211 110000 00000 0111233444444321
Q ss_pred CCCcHH--------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---Ee
Q 023214 83 SAGSEF--------------VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FT 145 (285)
Q Consensus 83 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~n 145 (285)
....+. ....+...+.. + +... +.-.....+|.++++++..++.+..++ +++++ ++
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~--~~~~~~~~LS~G~~qrv~la~al~~~p---~llllDEP~~ 162 (220)
T cd03263 90 LTVREHLRFYARLKGLPKSEIKEEVELLLRV-L-GLTD--KANKRARTLSGGMKRKLSLAIALIGGP---SVLLLDEPTS 162 (220)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-c-CCHH--HHhChhhhCCHHHHHHHHHHHHHhcCC---CEEEECCCCC
Confidence 111110 00111111111 1 1110 001112469999999999998887765 67776 77
Q ss_pred CCCCCCCChhcHHHHhh
Q 023214 146 GGDELEDNDETLEDYLG 162 (285)
Q Consensus 146 k~D~~~~~~~~l~~~l~ 162 (285)
.+|.... ..+.+.+.
T Consensus 163 ~LD~~~~--~~l~~~l~ 177 (220)
T cd03263 163 GLDPASR--RAIWDLIL 177 (220)
T ss_pred CCCHHHH--HHHHHHHH
Confidence 7775544 45555554
No 343
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.94 E-value=4.8e-09 Score=98.51 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=40.2
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+.++++++||.+..| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 19 ~~~il~~vs~~i~~G--e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~ 63 (556)
T PRK11819 19 KKQILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDKEFEGE 63 (556)
T ss_pred CCeeeeCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 467999999999999 899999999999999999999988765543
No 344
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.94 E-value=4.7e-09 Score=86.88 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=38.8
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 18 ~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~~~G 60 (221)
T TIGR02211 18 TRVLKGVSLSIGKG--EIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60 (221)
T ss_pred eEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 35899999999999 89999999999999999999999876554
No 345
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.93 E-value=4.3e-09 Score=82.91 Aligned_cols=44 Identities=25% Similarity=0.246 Sum_probs=39.0
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 12 ~~~vl~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G 55 (163)
T cd03216 12 GVKALDGVSLSVRRG--EVHALLGENGAGKSTLMKILSGLYKPDSG 55 (163)
T ss_pred CeEEEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 456899999999999 89999999999999999999998765443
No 346
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.93 E-value=3.9e-09 Score=84.00 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=38.5
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 15 ~~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G 57 (173)
T cd03246 15 PPVLRNVSFSIEPG--ESLAIIGPSGSGKSTLARLILGLLRPTSG 57 (173)
T ss_pred CcceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 35899999999999 89999999999999999999998766554
No 347
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=4.1e-09 Score=88.38 Aligned_cols=44 Identities=32% Similarity=0.338 Sum_probs=39.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (239)
T cd03296 14 DFVALDDVSLDIPSG--ELVALLGPSGSGKTTLLRLIAGLERPDSG 57 (239)
T ss_pred CEEeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 356899999999999 89999999999999999999998766554
No 348
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.93 E-value=5.8e-09 Score=85.91 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=38.7
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 14 ~~~l~~~sl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (214)
T cd03292 14 TAALDGINISISAG--EFVFLVGPSGAGKSTLLKLIYKEELPTSG 56 (214)
T ss_pred ceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 46899999999999 89999999999999999999998765554
No 349
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.93 E-value=9.6e-08 Score=85.52 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=75.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh------CCcccccccCCC-----------CcceeEEEEEEEee-------------
Q 023214 17 NGERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSS-----------GVTSTCEMQRTVLK------------- 66 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~------g~~~~~~~~~~~-----------~~t~~~~~~~~~~~------------- 66 (285)
+++..|+++|++|+||||++..|+ |..+......+. +......++.....
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 334689999999999999999887 433221111110 00000111111100
Q ss_pred ---CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE
Q 023214 67 ---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 143 (285)
Q Consensus 67 ---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil 143 (285)
.+..++||||||... .+.....++....... .+|.+++|+|+..+.. .......+...++ +.-++
T Consensus 178 ~~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~~--~p~e~lLVlda~~Gq~--a~~~a~~F~~~~~-----~~g~I 245 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEAI--QPDNIIFVMDGSIGQA--AEAQAKAFKDSVD-----VGSVI 245 (429)
T ss_pred HHhCCCCEEEEECCCCCc---chHHHHHHHHHHhhhc--CCcEEEEEeccccChh--HHHHHHHHHhccC-----CcEEE
Confidence 145799999999763 3455667777766433 5688899999753322 2223333333222 67889
Q ss_pred EeCCCCCCCChhcHH
Q 023214 144 FTGGDELEDNDETLE 158 (285)
Q Consensus 144 ~nk~D~~~~~~~~l~ 158 (285)
+||+|.....+..+.
T Consensus 246 lTKlD~~argG~aLs 260 (429)
T TIGR01425 246 ITKLDGHAKGGGALS 260 (429)
T ss_pred EECccCCCCccHHhh
Confidence 999998765434443
No 350
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.93 E-value=5.6e-09 Score=91.75 Aligned_cols=147 Identities=18% Similarity=0.123 Sum_probs=83.0
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC-CCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-SGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (285)
|+..+++++||.+..| ..++|+|+||+|||||+++|+|...+.+|... .|..... ..... ...-.++.+.|.+.
T Consensus 52 ~~~~~l~~is~~i~~G--ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~--~~~~~-~~~ig~v~q~~~~~ 126 (340)
T PRK13536 52 GDKAVVNGLSFTVASG--ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA--RARLA-RARIGVVPQFDNLD 126 (340)
T ss_pred CCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCc--chHHH-hccEEEEeCCccCC
Confidence 3456889999999999 89999999999999999999998876654321 0100000 00000 11123445555554
Q ss_pred CCCCCcHHHHHH---------------HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214 81 DFSAGSEFVGKE---------------IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV-- 143 (285)
Q Consensus 81 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil-- 143 (285)
.. .+..+.... +...+. .+ +... ..-..-..+|.+.++.+..+..+...+ +++|+
T Consensus 127 ~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~-~~-~L~~--~~~~~~~~LS~G~kqrv~lA~aL~~~P---~lLiLDE 198 (340)
T PRK13536 127 LE-FTVRENLLVFGRYFGMSTREIEAVIPSLLE-FA-RLES--KADARVSDLSGGMKRRLTLARALINDP---QLLILDE 198 (340)
T ss_pred CC-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHH-Hc-CCch--hhCCChhhCCHHHHHHHHHHHHHhcCC---CEEEEEC
Confidence 22 111111110 001110 00 0000 000011369999999999999887765 67777
Q ss_pred -EeCCCCCCCChhcHHHHhhh
Q 023214 144 -FTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 144 -~nk~D~~~~~~~~l~~~l~~ 163 (285)
++.+|-... ..+.+.+..
T Consensus 199 Pt~gLD~~~r--~~l~~~l~~ 217 (340)
T PRK13536 199 PTTGLDPHAR--HLIWERLRS 217 (340)
T ss_pred CCCCCCHHHH--HHHHHHHHH
Confidence 788886555 555555543
No 351
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.92 E-value=1.4e-09 Score=91.28 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=39.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G 57 (242)
T TIGR03411 14 GFKALNDLSLYVDPG--ELRVIIGPNGAGKTTMMDVITGKTRPDEG 57 (242)
T ss_pred CeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 356899999999999 89999999999999999999998776554
No 352
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.92 E-value=4.8e-09 Score=85.55 Aligned_cols=43 Identities=23% Similarity=0.160 Sum_probs=39.2
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
.+++|+||++..| .+|+|||+||||||||++.|+|-..|++|.
T Consensus 41 ~aL~disf~i~~G--e~vGiiG~NGaGKSTLlkliaGi~~Pt~G~ 83 (249)
T COG1134 41 WALKDISFEIYKG--ERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83 (249)
T ss_pred EEecCceEEEeCC--CEEEEECCCCCcHHHHHHHHhCccCCCCce
Confidence 4688999999999 899999999999999999999999877653
No 353
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.92 E-value=6.4e-09 Score=97.62 Aligned_cols=45 Identities=20% Similarity=0.148 Sum_probs=40.1
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+.++++++|+.+..| ..++|+|+||+|||||+++|+|...+..|.
T Consensus 17 ~~~il~~is~~i~~G--e~~~liG~NGsGKSTLl~~i~G~~~p~~G~ 61 (552)
T TIGR03719 17 KKEILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDKEFNGE 61 (552)
T ss_pred CCeeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 457899999999999 899999999999999999999988665543
No 354
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.92 E-value=1.7e-09 Score=88.20 Aligned_cols=39 Identities=31% Similarity=0.473 Sum_probs=35.9
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|..
T Consensus 12 ~~~~l~~is~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 12 GKEILKGVNLTIKKG--EVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CEEeeeccceEECCC--cEEEEECCCCCCHHHHHHHHhCCC
Confidence 346899999999999 899999999999999999999984
No 355
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.92 E-value=8.2e-09 Score=87.12 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=39.1
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 15 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (250)
T PRK11264 15 GQTVLHGIDLEVKPG--EVVAIIGPSGSGKTTLLRCINLLEQPEAG 58 (250)
T ss_pred CeeeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 456899999999999 89999999999999999999998765554
No 356
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=5.8e-09 Score=89.09 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=39.8
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 13 ~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (271)
T PRK13638 13 DEPVLKGLNLDFSLS--PVTGLVGANGCGKSTLFMNLSGLLRPQKG 56 (271)
T ss_pred CcccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCcc
Confidence 456899999999999 89999999999999999999998876655
No 357
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.92 E-value=1e-09 Score=90.91 Aligned_cols=44 Identities=34% Similarity=0.402 Sum_probs=39.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 12 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (222)
T cd03224 12 KSQILFGVSLTVPEG--EIVALLGRNGAGKTTLLKTIMGLLPPRSG 55 (222)
T ss_pred CeeEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 456889999999999 89999999999999999999998876554
No 358
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.91 E-value=1.4e-09 Score=88.89 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=39.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 13 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G 56 (204)
T PRK13538 13 ERILFSGLSFTLNAG--ELVQIEGPNGAGKTSLLRILAGLARPDAG 56 (204)
T ss_pred CEEEEecceEEECCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 346889999999999 89999999999999999999998876554
No 359
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.91 E-value=5.9e-09 Score=87.24 Aligned_cols=45 Identities=22% Similarity=0.187 Sum_probs=39.8
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 13 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~ 57 (236)
T TIGR03864 13 ARRALDDVSFTVRPG--EFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57 (236)
T ss_pred CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 356889999999999 899999999999999999999988766553
No 360
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=1.1e-09 Score=93.29 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=39.1
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 23 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 66 (265)
T PRK10575 23 GRTLLHPLSLTFPAG--KVTGLIGHNGSGKSTLLKMLGRHQPPSEG 66 (265)
T ss_pred CEEEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 346899999999999 89999999999999999999998765554
No 361
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.91 E-value=3.6e-09 Score=99.87 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=86.2
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-cc----------eeEEEEEEEeeCCceEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VT----------STCEMQRTVLKDGQVVN 72 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~-~t----------~~~~~~~~~~~~~~~~~ 72 (285)
.++++++|+.+++| .+|+|+|++|+|||||++.|+|...+..|..... .. ....+.++.. .=..-+
T Consensus 345 ~~il~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~-~lf~~T 421 (571)
T TIGR02203 345 RPALDSISLVIEPG--ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDV-VLFNDT 421 (571)
T ss_pred CccccCeeEEecCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCc-cccccc
Confidence 46889999999999 8999999999999999999999987766543211 00 0011111110 000001
Q ss_pred EEeCCCCCCC-CCCcHHHHHHHHHH-----HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214 73 VIDTPGLFDF-SAGSEFVGKEIVKC-----IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--- 143 (285)
Q Consensus 73 liDtpG~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--- 143 (285)
+-|.-.++++ ..+++.+..-+..+ +.....+.|. .+-+.+..+|+++++++..++..+.++ +++++
T Consensus 422 i~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt--~i~~~g~~LSgGqrQRiaLARall~~~---~illLDEp 496 (571)
T TIGR02203 422 IANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDT--PIGENGVLLSGGQRQRLAIARALLKDA---PILILDEA 496 (571)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccc--eecCCCCcCCHHHHHHHHHHHHHhcCC---CEEEEeCc
Confidence 1111111211 12223222222211 1111112232 122335579999999999999998766 78887
Q ss_pred EeCCCCCCCChhcHHHHhhh
Q 023214 144 FTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~ 163 (285)
++.+|.... ..+.+.+.+
T Consensus 497 ts~LD~~~~--~~i~~~L~~ 514 (571)
T TIGR02203 497 TSALDNESE--RLVQAALER 514 (571)
T ss_pred cccCCHHHH--HHHHHHHHH
Confidence 888887665 556555554
No 362
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.91 E-value=8e-10 Score=88.38 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=38.2
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++++++++.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 16 ~~l~~i~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G 57 (178)
T cd03247 16 QVLKNLSLELKQG--EKIALLGRSGSGKSTLLQLLTGDLKPQQG 57 (178)
T ss_pred cceEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 6899999999999 89999999999999999999998766554
No 363
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.91 E-value=3.2e-09 Score=79.08 Aligned_cols=113 Identities=18% Similarity=0.131 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
..+.++|--.+|||||+|.++.... .. ...+|+....+.+.- ++..+.++|.||..-+. .....
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~-~e---dmiptvGfnmrk~tk-gnvtiklwD~gGq~rfr-----------smWer 84 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQY-LE---DMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFR-----------SMWER 84 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccc-hh---hhcccccceeEEecc-CceEEEEEecCCCccHH-----------HHHHH
Confidence 7899999999999999999874221 11 123455555555544 56779999999976432 23335
Q ss_pred ccCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhCccc--cCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKI--FDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~--~~~~~~~~l~~~~~~~~~~~--~~~~iil~nk~D~~~~ 152 (285)
+++++++++|++|+.++ ++... .. +..++..+. ..|++++.||.|....
T Consensus 85 ycR~v~aivY~VDaad~~k~~~sr-~E---L~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 85 YCRGVSAIVYVVDAADPDKLEASR-SE---LHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred HhhcCcEEEEEeecCCcccchhhH-HH---HHHHhcchhhcCCcEEEecccccCccc
Confidence 57899999999999643 33322 22 222223332 2599999999998765
No 364
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=6.9e-09 Score=86.64 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=38.6
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 22 ~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 64 (233)
T PRK11629 22 TDVLHNVSFSIGEG--EMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64 (233)
T ss_pred eeeEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 35899999999999 89999999999999999999998765554
No 365
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=3.1e-09 Score=89.21 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=79.8
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+..|.... +.... ....... ...-.++.+.|.+..
T Consensus 15 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~-~~~~~~~-~~~i~~~~q~~~~~~ 90 (241)
T PRK14250 15 GKEILKDISVKFEGG--AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIK-TIDVIDL-RRKIGMVFQQPHLFE 90 (241)
T ss_pred CeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh-hcChHHh-hhcEEEEecCchhch
Confidence 456899999999999 899999999999999999999987665543211 10000 0000000 001122333333321
Q ss_pred CCCCcHH-----------HHHHHHHHHhhccCCcc-EEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeC
Q 023214 82 FSAGSEF-----------VGKEIVKCIGMAKDGIH-AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTG 146 (285)
Q Consensus 82 ~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk 146 (285)
. +..+ ....+...+.. + +.. . +.-.....+|+++++++.+++.+...+ +++++ ++.
T Consensus 91 ~--tv~e~l~~~~~~~~~~~~~~~~~l~~-~-~l~~~--~~~~~~~~LS~G~~qrl~la~al~~~p---~llllDEPt~~ 161 (241)
T PRK14250 91 G--TVKDNIEYGPMLKGEKNVDVEYYLSI-V-GLNKE--YATRDVKNLSGGEAQRVSIARTLANNP---EVLLLDEPTSA 161 (241)
T ss_pred h--hHHHHHhcchhhcCcHHHHHHHHHHH-c-CCCHH--HhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEeCCccc
Confidence 1 0000 00111111111 1 110 0 011112479999999999999887765 67777 788
Q ss_pred CCCCCCChhcHHHHhh
Q 023214 147 GDELEDNDETLEDYLG 162 (285)
Q Consensus 147 ~D~~~~~~~~l~~~l~ 162 (285)
+|.... ..+.+.+.
T Consensus 162 LD~~~~--~~l~~~l~ 175 (241)
T PRK14250 162 LDPTST--EIIEELIV 175 (241)
T ss_pred CCHHHH--HHHHHHHH
Confidence 886544 55555554
No 366
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.90 E-value=6.8e-09 Score=82.58 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=35.2
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+..+..+ ++.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~l~~-~~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 54 (177)
T cd03222 12 VFFLLVE-LGVVKEG--EVIGIVGPNGTGKTTAVKILAGQLIPNGD 54 (177)
T ss_pred CEEEEcc-CcEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCCc
Confidence 3445555 3788899 89999999999999999999998866543
No 367
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=1.4e-09 Score=101.53 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=40.5
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
++.++++++|+.+..| .+++|+|+||+|||||+++|+|...+..|.
T Consensus 12 ~~~~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~ 57 (530)
T PRK15064 12 GAKPLFENISVKFGGG--NRYGLIGANGCGKSTFMKILGGDLEPSAGN 57 (530)
T ss_pred CCcEeEeCCEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 4567899999999999 899999999999999999999987665543
No 368
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.90 E-value=1.8e-09 Score=102.17 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=85.0
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccce----------eEEEEEEEeeCCceE
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTS----------TCEMQRTVLKDGQVV 71 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~----------~~~~~~~~~~~~~~~ 71 (285)
+.++++++|+.+++| .+++|+|++|+|||||++.|+|.. |..|.... +... ...+.++.. .=-+-
T Consensus 362 ~~~vL~~i~l~i~~G--~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~LF~~ 437 (588)
T PRK11174 362 GKTLAGPLNFTLPAG--QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNP-QLPHG 437 (588)
T ss_pred CCeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCC-cCCCc
Confidence 356889999999999 899999999999999999999988 55543211 1000 011111100 00000
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHh--hccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---Ee
Q 023214 72 NVIDTPGLFDFSAGSEFVGKEIVKCIG--MAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FT 145 (285)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~n 145 (285)
++-|.--++.+..+++++..-+..+-. ....-+++.--.+ +.+..+|+++++++..++..+.++ +++++ ++
T Consensus 438 TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~---~IliLDE~TS 514 (588)
T PRK11174 438 TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC---QLLLLDEPTA 514 (588)
T ss_pred CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCcc
Confidence 111111111222233333222222100 0001122322222 335579999999999999998876 78887 88
Q ss_pred CCCCCCCChhcHHHHhhh
Q 023214 146 GGDELEDNDETLEDYLGR 163 (285)
Q Consensus 146 k~D~~~~~~~~l~~~l~~ 163 (285)
.+|.... ..+.+.+..
T Consensus 515 aLD~~te--~~i~~~l~~ 530 (588)
T PRK11174 515 SLDAHSE--QLVMQALNA 530 (588)
T ss_pred CCCHHHH--HHHHHHHHH
Confidence 8886655 555555543
No 369
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=1.5e-09 Score=91.89 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=39.5
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 17 ~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 60 (255)
T PRK11300 17 GLLAVNNVNLEVREQ--EIVSLIGPNGAGKTTVFNCLTGFYKPTGG 60 (255)
T ss_pred CEEEEEeeeeEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence 456889999999999 89999999999999999999999876655
No 370
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.90 E-value=2.6e-09 Score=88.76 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=39.5
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+++| ..++|+|+||+|||||+++|+|...+..|
T Consensus 19 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 62 (225)
T PRK10247 19 DAKILNNISFSLRAG--EFKLITGPSGCGKSTLLKIVASLISPTSG 62 (225)
T ss_pred CceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 456899999999999 89999999999999999999998766554
No 371
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.89 E-value=7.2e-09 Score=86.70 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=39.5
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
..++++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 33 ~~~il~~vs~~i~~G--e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G 76 (236)
T cd03267 33 EVEALKGISFTIEKG--EIVGFIGPNGAGKTTTLKILSGLLQPTSG 76 (236)
T ss_pred CeeeeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 456899999999999 89999999999999999999998766554
No 372
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.89 E-value=5e-09 Score=101.31 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=87.6
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Cc----------ceeEEEEEEEeeCCceEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GV----------TSTCEMQRTVLKDGQVVN 72 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~----------t~~~~~~~~~~~~~~~~~ 72 (285)
+++++++|+.+++| .+|+|+|++|+|||||++.|+|...|..|.... +. ...+.+.++.. .=-.-+
T Consensus 492 ~~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~-~lf~gT 568 (710)
T TIGR03796 492 PPLIENFSLTLQPG--QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDI-FLFEGT 568 (710)
T ss_pred CCcccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCC-hhhhcc
Confidence 56899999999999 899999999999999999999998776653211 00 01111111111 000011
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHH-----HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214 73 VIDTPGLFDFSAGSEFVGKEIVKC-----IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F 144 (285)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~ 144 (285)
+-|..-+.++..+++.+.+-+..+ +.....+.|.. +-+.+..+|+++++++..++..+.++ +++++ +
T Consensus 569 i~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~--i~e~G~~LSGGQrQRiaLARall~~p---~iliLDEpt 643 (710)
T TIGR03796 569 VRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAE--LAEGGANLSGGQRQRLEIARALVRNP---SILILDEAT 643 (710)
T ss_pred HHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccce--eccCCCCCCHHHHHHHHHHHHHhhCC---CEEEEECcc
Confidence 111111222222233332222211 11111122321 22445689999999999999998776 78887 8
Q ss_pred eCCCCCCCChhcHHHHhhh
Q 023214 145 TGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 145 nk~D~~~~~~~~l~~~l~~ 163 (285)
+.+|.... ..+.+.+..
T Consensus 644 S~LD~~te--~~i~~~l~~ 660 (710)
T TIGR03796 644 SALDPETE--KIIDDNLRR 660 (710)
T ss_pred ccCCHHHH--HHHHHHHHh
Confidence 88886655 566666654
No 373
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.89 E-value=7.7e-09 Score=88.23 Aligned_cols=44 Identities=27% Similarity=0.335 Sum_probs=39.2
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 19 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 62 (269)
T PRK11831 19 NRCIFDNISLTVPRG--KITAIMGPSGIGKTTLLRLIGGQIAPDHG 62 (269)
T ss_pred CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 346789999999999 89999999999999999999999866554
No 374
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.89 E-value=4.4e-09 Score=84.40 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=37.0
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 15 ~l~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (182)
T cd03215 15 AVRDVSFEVRAG--EIVGIAGLVGNGQTELAEALFGLRPPASG 55 (182)
T ss_pred eecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 578899999999 89999999999999999999999876554
No 375
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=1.4e-09 Score=89.42 Aligned_cols=146 Identities=17% Similarity=0.131 Sum_probs=79.2
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
+.++++++|+.+.+| .++|+|+||+|||||+++|+|...+.+|.... +..... ....+ ...-..+.+.|.++.
T Consensus 12 ~~~~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~--~~~~~-~~~i~~~~q~~~~~~ 85 (211)
T cd03264 12 KKRALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK--QPQKL-RRRIGYLPQEFGVYP 85 (211)
T ss_pred CEEEEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCcccc--chHHH-HhheEEecCCCcccc
Confidence 346889999999997 89999999999999999999987665543210 100000 00000 011122333443332
Q ss_pred CCCCcHH--------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214 82 FSAGSEF--------------VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F 144 (285)
Q Consensus 82 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~ 144 (285)
.....+. ....+...+.. + +.... .-.....+|.++++++..++.+..++ +++++ +
T Consensus 86 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p---~llllDEPt 158 (211)
T cd03264 86 NFTVREFLDYIAWLKGIPSKEVKARVDEVLEL-V-NLGDR--AKKKIGSLSGGMRRRVGIAQALVGDP---SILIVDEPT 158 (211)
T ss_pred cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C-CCHHH--HhCchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCc
Confidence 1010010 01111111111 1 11110 11112469999999999999887765 66776 7
Q ss_pred eCCCCCCCChhcHHHHhhh
Q 023214 145 TGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 145 nk~D~~~~~~~~l~~~l~~ 163 (285)
+.+|.... ..+.+++..
T Consensus 159 ~~LD~~~~--~~l~~~l~~ 175 (211)
T cd03264 159 AGLDPEER--IRFRNLLSE 175 (211)
T ss_pred ccCCHHHH--HHHHHHHHH
Confidence 77775544 555555543
No 376
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=2.1e-09 Score=90.27 Aligned_cols=44 Identities=30% Similarity=0.362 Sum_probs=39.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 15 ~~~~l~~~sl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 58 (241)
T PRK10895 15 GRRVVEDVSLTVNSG--EIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58 (241)
T ss_pred CEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 346889999999999 89999999999999999999998876554
No 377
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.89 E-value=8.2e-09 Score=91.85 Aligned_cols=45 Identities=31% Similarity=0.351 Sum_probs=39.6
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+..+++++|+.+..| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 15 ~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~ 59 (369)
T PRK11000 15 DVVISKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59 (369)
T ss_pred CeEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 446789999999999 899999999999999999999988766553
No 378
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.89 E-value=7.1e-09 Score=83.05 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=37.6
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~ 47 (285)
.++++++++.+.+| ..++|+|+||+|||||+++|+|...+..
T Consensus 12 ~~~l~~~~~~i~~G--~~~~l~G~nGsGKStLl~~i~G~~~~~~ 53 (180)
T cd03214 12 RTVLDDLSLSIEAG--EIVGILGPNGAGKSTLLKTLAGLLKPSS 53 (180)
T ss_pred eeeEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 46899999999999 8999999999999999999999875443
No 379
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.89 E-value=5.6e-09 Score=87.74 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=35.9
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
+..+++++|+.+.+| ..++|+|+||+|||||+++|+|..
T Consensus 12 ~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 12 DKEILKGVNLTVKKG--EIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred CEEEEeccceEEcCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999 899999999999999999999984
No 380
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=6.7e-09 Score=84.77 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=37.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
+..+++++++.+.+| ..++|+|+||+|||||+++|+|...
T Consensus 19 ~~~il~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 19 KIPILKDFSGVVKPG--EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CceeeeeEEEEECCC--cEEEEECCCCCCHHHHHHHhcccCC
Confidence 467899999999999 8999999999999999999999876
No 381
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.89 E-value=5.5e-09 Score=98.89 Aligned_cols=149 Identities=17% Similarity=0.084 Sum_probs=84.8
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-c----------ceeEEEEEEEeeCCceEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-V----------TSTCEMQRTVLKDGQVVN 72 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~-~----------t~~~~~~~~~~~~~~~~~ 72 (285)
.++++++|+.+++| .+++|+|++|+|||||++.|+|...|..|..... . ...+.+.++.. .=-.-+
T Consensus 348 ~~iL~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~~T 424 (588)
T PRK13657 348 RQGVEDVSFEAKPG--QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA-GLFNRS 424 (588)
T ss_pred CceecceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCc-cccccc
Confidence 46899999999999 8999999999999999999999987766532110 0 01111111111 000011
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHH-----HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214 73 VIDTPGLFDFSAGSEFVGKEIVK-----CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F 144 (285)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~ 144 (285)
+-|--.+.++..+++.+...+.. .+.....+.|.. +-+.+..+|+++++++..++..+.++ +++++ +
T Consensus 425 i~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~--i~~~g~~LSgGq~QRialARall~~~---~iliLDEpt 499 (588)
T PRK13657 425 IEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTV--VGERGRQLSGGERQRLAIARALLKDP---PILILDEAT 499 (588)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccch--hcCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCc
Confidence 11111111122223333222221 111111123332 22334579999999999999988765 78877 7
Q ss_pred eCCCCCCCChhcHHHHhh
Q 023214 145 TGGDELEDNDETLEDYLG 162 (285)
Q Consensus 145 nk~D~~~~~~~~l~~~l~ 162 (285)
+.+|.... ..+.+.+.
T Consensus 500 s~LD~~t~--~~i~~~l~ 515 (588)
T PRK13657 500 SALDVETE--AKVKAALD 515 (588)
T ss_pred cCCCHHHH--HHHHHHHH
Confidence 77776544 45555444
No 382
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.89 E-value=1.1e-08 Score=84.68 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=38.9
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 17 ~~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~~~G 59 (220)
T cd03245 17 IPALDNVSLTIRAG--EKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59 (220)
T ss_pred cccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 46899999999999 89999999999999999999999866554
No 383
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.88 E-value=7.5e-09 Score=87.34 Aligned_cols=137 Identities=16% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+.+|.........+ .++...|.+...
T Consensus 16 ~~~vl~~vs~~i~~G--e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i------------~~v~q~~~~~~~ 81 (251)
T PRK09544 16 QRRVLSDVSLELKPG--KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRI------------GYVPQKLYLDTT 81 (251)
T ss_pred CceEEEeEEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCE------------EEeccccccccc
Confidence 456889999999999 899999999999999999999987665543211100111 112222222111
Q ss_pred C-CCcHH--------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCC
Q 023214 83 S-AGSEF--------VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDEL 150 (285)
Q Consensus 83 ~-~~~~~--------~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~ 150 (285)
. .+... ....+...+... +... +.-.....+|.++++.+.+++.+..++ +++++ ++.+|..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGq~qrv~laral~~~p---~lllLDEPt~~LD~~ 154 (251)
T PRK09544 82 LPLTVNRFLRLRPGTKKEDILPALKRV--QAGH--LIDAPMQKLSGGETQRVLLARALLNRP---QLLVLDEPTQGVDVN 154 (251)
T ss_pred cChhHHHHHhccccccHHHHHHHHHHc--CChH--HHhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCCcCCCHH
Confidence 0 00000 001122222111 1111 011112479999999999998887655 67777 7888865
Q ss_pred CCChhcHHHHhh
Q 023214 151 EDNDETLEDYLG 162 (285)
Q Consensus 151 ~~~~~~l~~~l~ 162 (285)
.. ..+.+.+.
T Consensus 155 ~~--~~l~~~L~ 164 (251)
T PRK09544 155 GQ--VALYDLID 164 (251)
T ss_pred HH--HHHHHHHH
Confidence 54 45555443
No 384
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.88 E-value=4.9e-09 Score=100.98 Aligned_cols=152 Identities=15% Similarity=0.039 Sum_probs=86.4
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVVN 72 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~~ 72 (285)
.++++++|+++++| .+++++|++|+|||||++.|+|...|..|.... +.. ....+.++.. .=-.-+
T Consensus 466 ~~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~-~lf~gT 542 (686)
T TIGR03797 466 PLILDDVSLQIEPG--EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNG-RLMSGS 542 (686)
T ss_pred ccceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCC-ccCccc
Confidence 56899999999999 899999999999999999999998776654211 100 0111111110 000001
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHH-h-hccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeC
Q 023214 73 VIDTPGLFDFSAGSEFVGKEIVKCI-G-MAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTG 146 (285)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk 146 (285)
+-|-.-+..+ .+++++..-+..+- . ....-++++=-.+ +.+..+|+++++++..++..+.++ +++++ ++.
T Consensus 543 I~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p---~iLiLDEpTS~ 618 (686)
T TIGR03797 543 IFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP---RILLFDEATSA 618 (686)
T ss_pred HHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccC
Confidence 1111112222 22232222222110 0 0000122221222 335679999999999999998876 78887 888
Q ss_pred CCCCCCChhcHHHHhhhc
Q 023214 147 GDELEDNDETLEDYLGRE 164 (285)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~ 164 (285)
+|.... ..+.+.+...
T Consensus 619 LD~~te--~~i~~~L~~~ 634 (686)
T TIGR03797 619 LDNRTQ--AIVSESLERL 634 (686)
T ss_pred CCHHHH--HHHHHHHHHh
Confidence 886655 5666666543
No 385
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.88 E-value=9e-09 Score=85.75 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=77.6
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (285)
++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|.... +.... .. .....++.+.|++... .+
T Consensus 1 l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~------~~-~~~~~~v~q~~~l~~~-~t 70 (230)
T TIGR01184 1 LKGVNLTIQQG--EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQIT------EP-GPDRMVVFQNYSLLPW-LT 70 (230)
T ss_pred CCceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC------CC-ChhheEEecCcccCCC-CC
Confidence 36789999999 899999999999999999999998765543211 10000 00 0011234445544321 11
Q ss_pred cHH-H----------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---Ee
Q 023214 86 SEF-V----------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FT 145 (285)
Q Consensus 86 ~~~-~----------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~n 145 (285)
..+ + ...+...+.. + +... +.-.....+|+++++++..++.+...+ +++++ ++
T Consensus 71 v~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p---~lllLDEPt~ 143 (230)
T TIGR01184 71 VRENIALAVDRVLPDLSKSERRAIVEEHIAL-V-GLTE--AADKRPGQLSGGMKQRVAIARALSIRP---KVLLLDEPFG 143 (230)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHH-c-CCHH--HHcCChhhCCHHHHHHHHHHHHHHcCC---CEEEEcCCCc
Confidence 111 0 0111111111 0 1111 011112469999999999999887765 77777 78
Q ss_pred CCCCCCCChhcHHHHhh
Q 023214 146 GGDELEDNDETLEDYLG 162 (285)
Q Consensus 146 k~D~~~~~~~~l~~~l~ 162 (285)
.+|.... ..+.+.+.
T Consensus 144 gLD~~~~--~~l~~~l~ 158 (230)
T TIGR01184 144 ALDALTR--GNLQEELM 158 (230)
T ss_pred CCCHHHH--HHHHHHHH
Confidence 8886554 45555443
No 386
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1e-08 Score=87.58 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=39.9
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
++++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 19 ~~~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 63 (272)
T PRK15056 19 GHTALRDASFTVPGG--SIAALVGVNGSGKSTLFKALMGFVRLASGK 63 (272)
T ss_pred CcEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 356899999999999 899999999999999999999998765553
No 387
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.88 E-value=2.1e-09 Score=93.23 Aligned_cols=146 Identities=15% Similarity=0.119 Sum_probs=83.5
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
+..+++++|+.+++| ..++|+|+||+|||||+++|+|...+..|.... +..... ..... ...-.++.+.|.+..
T Consensus 14 ~~~~l~~is~~i~~G--ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~--~~~~~-~~~ig~~~q~~~l~~ 88 (301)
T TIGR03522 14 TQNALDEVSFEAQKG--RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ--NPKEV-QRNIGYLPEHNPLYL 88 (301)
T ss_pred CEEEEEEeEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc--ChHHH-HhceEEecCCCCCCC
Confidence 456899999999999 899999999999999999999988766553211 100000 00000 011234455555442
Q ss_pred CCCCcHHHHH---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214 82 FSAGSEFVGK---------------EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--- 143 (285)
Q Consensus 82 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--- 143 (285)
. .+..+... .+...+.. + +.... .-.....+|.+.++++.+++.+++.+ +++++
T Consensus 89 ~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~-gl~~~--~~~~~~~LS~G~~qrv~la~al~~~p---~lliLDEP 160 (301)
T TIGR03522 89 D-MYVREYLQFIAGIYGMKGQLLKQRVEEMIEL-V-GLRPE--QHKKIGQLSKGYRQRVGLAQALIHDP---KVLILDEP 160 (301)
T ss_pred C-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-C-CCchH--hcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCC
Confidence 1 11111111 11111111 0 11110 01112468999999999999988876 67777
Q ss_pred EeCCCCCCCChhcHHHHhhh
Q 023214 144 FTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~ 163 (285)
++.+|.... ..+.+.+..
T Consensus 161 t~gLD~~~~--~~l~~~l~~ 178 (301)
T TIGR03522 161 TTGLDPNQL--VEIRNVIKN 178 (301)
T ss_pred cccCCHHHH--HHHHHHHHH
Confidence 888886555 555555554
No 388
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=1.7e-08 Score=81.68 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=35.5
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
+++++++|+.+.+| ..++|+|+||+|||||+++|+|..
T Consensus 20 ~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 20 RQLLNNISGYVKPG--TLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred eEeEEccEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999999999 899999999999999999999964
No 389
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.88 E-value=3.1e-09 Score=90.15 Aligned_cols=44 Identities=30% Similarity=0.387 Sum_probs=39.5
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+..+++++|+++.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 14 ~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p~~G 57 (258)
T PRK13548 14 GRTLLDDVSLTLRPG--EVVAILGPNGAGKSTLLRALSGELSPDSG 57 (258)
T ss_pred CeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 456899999999999 89999999999999999999998766554
No 390
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.88 E-value=2e-08 Score=89.79 Aligned_cols=89 Identities=20% Similarity=0.088 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe--------------------eC---CceEEEEeC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------KD---GQVVNVIDT 76 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~liDt 76 (285)
.+|+|||.+++|||||+|+|++....... ..++|..+....... .. ...+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~--y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIAN--YPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccC--CCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 58999999999999999999987643221 123343333322211 01 245789999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 023214 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (285)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (285)
||+.........++..+ ...+..+|++++|+++.
T Consensus 80 aGl~~ga~~g~glg~~f----L~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQF----LDDLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHH----HHHHHHCCEEEEEEeCC
Confidence 99975322222233333 33456779999999985
No 391
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.88 E-value=1e-08 Score=86.63 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=39.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (252)
T TIGR03005 12 ILTVLDGLNFSVAAG--EKVALIGPSGSGKSTILRILMTLEPIDEG 55 (252)
T ss_pred CeeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 346889999999999 89999999999999999999998876554
No 392
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=8.9e-09 Score=90.79 Aligned_cols=148 Identities=13% Similarity=0.117 Sum_probs=81.1
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEe--eCCceEEEEeCCCCC
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVL--KDGQVVNVIDTPGLF 80 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~--~~~~~~~liDtpG~~ 80 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|.... +..... ...... ....-.++...|.+.
T Consensus 18 ~~il~~vsl~i~~G--ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~-~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAG--EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTA-LSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCc-CCHHHHHHHhcCEEEEeCCCccC
Confidence 46899999999999 899999999999999999999998765543211 100000 000000 000112233344433
Q ss_pred CCCCCcH--------------HHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214 81 DFSAGSE--------------FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--- 143 (285)
Q Consensus 81 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--- 143 (285)
......+ .....+...+.. + +... +.-.....+|+++++++..++.+..++ +++++
T Consensus 95 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~-~-gL~~--~~~~~~~~LSgGq~qRv~lAraL~~~p---~iLlLDEP 167 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPKAEIKARVTELLEL-V-GLSD--KADRYPAQLSGGQKQRVAIARALASNP---KVLLCDEA 167 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-c-CCch--hhhCChhhCCHHHHHHHHHHHHHHcCC---CEEEEeCC
Confidence 2100000 111111111111 1 1111 111112469999999999999887765 67777
Q ss_pred EeCCCCCCCChhcHHHHhhh
Q 023214 144 FTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~ 163 (285)
++.+|.... ..+.+++..
T Consensus 168 ts~LD~~~~--~~l~~~L~~ 185 (343)
T PRK11153 168 TSALDPATT--RSILELLKD 185 (343)
T ss_pred cccCCHHHH--HHHHHHHHH
Confidence 788886655 555555543
No 393
>PLN03073 ABC transporter F family; Provisional
Probab=98.87 E-value=3.3e-09 Score=101.67 Aligned_cols=40 Identities=30% Similarity=0.318 Sum_probs=36.9
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
|+.++++++|+.+..| .+++|||+||+|||||++.|+|..
T Consensus 188 ~~~~ll~~isl~i~~G--e~~gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 188 GGRDLIVDASVTLAFG--RHYGLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred CCCEEEECCEEEECCC--CEEEEECCCCCCHHHHHHHHcCCC
Confidence 4567999999999999 899999999999999999999864
No 394
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.87 E-value=2.5e-09 Score=87.13 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=39.6
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 13 ~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G 56 (200)
T PRK13540 13 DQPLLQQISFHLPAG--GLLHLKGSNGAGKTTLLKLIAGLLNPEKG 56 (200)
T ss_pred CeeEEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 456899999999999 89999999999999999999998876554
No 395
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.87 E-value=2e-09 Score=91.65 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=39.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 19 ~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G 62 (265)
T PRK10253 19 KYTVAENLTVEIPDG--HFTAIIGPNGCGKSTLLRTLSRLMTPAHG 62 (265)
T ss_pred CEEEeeecceEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 346899999999999 89999999999999999999998866554
No 396
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.87 E-value=7.2e-09 Score=88.32 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=39.8
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 26 ~~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~ 69 (267)
T PRK15112 26 VEAVKPLSFTLREG--QTLAIIGENGSGKSTLAKMLAGMIEPTSGE 69 (267)
T ss_pred cceeeeeeEEecCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCCE
Confidence 46899999999999 899999999999999999999998766653
No 397
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.86 E-value=5.1e-09 Score=98.68 Aligned_cols=149 Identities=14% Similarity=0.086 Sum_probs=89.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceE
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVV 71 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~ 71 (285)
+.++++++|+.+++| .++++||++|+||||++|.|++-..+..|.... +.. ....+.++.. .=-.-
T Consensus 341 ~~~vl~~is~~i~~G--e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~-~LF~~ 417 (567)
T COG1132 341 KKPVLKDISFSIEPG--EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP-LLFSG 417 (567)
T ss_pred CCccccCceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccc-eeecc
Confidence 357899999999999 899999999999999999999988764443211 100 0000111000 00001
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHH-----HhhccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214 72 NVIDTPGLFDFSAGSEFVGKEIVKC-----IGMAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV-- 143 (285)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil-- 143 (285)
++-|--.++.+..+++++.+....+ +.. + |++.--++ ..+..+|+++++++...+..+.++ |++++
T Consensus 418 TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~-l--p~g~dt~vge~G~~LSgGQrQrlaiARall~~~---~ILILDE 491 (567)
T COG1132 418 TIRENIALGRPDATDEEIEEALKLANAHEFIAN-L--PDGYDTIVGERGVNLSGGQRQRLAIARALLRNP---PILILDE 491 (567)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh-C--cccccceecCCCccCCHHHHHHHHHHHHHhcCC---CEEEEec
Confidence 1222222233323344444433322 111 1 22332333 345689999999999999998766 88888
Q ss_pred -EeCCCCCCCChhcHHHHhh
Q 023214 144 -FTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 144 -~nk~D~~~~~~~~l~~~l~ 162 (285)
++..|..+. ..+.+.+.
T Consensus 492 aTSalD~~tE--~~I~~~l~ 509 (567)
T COG1132 492 ATSALDTETE--ALIQDALK 509 (567)
T ss_pred cccccCHHhH--HHHHHHHH
Confidence 888887665 55666554
No 398
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.86 E-value=3.3e-09 Score=89.00 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=39.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 13 ~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 56 (240)
T PRK09493 13 PTQVLHNIDLNIDQG--EVVVIIGPSGSGKSTLLRCINKLEEITSG 56 (240)
T ss_pred CeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 356899999999999 89999999999999999999998766554
No 399
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.86 E-value=9.4e-09 Score=93.80 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=38.1
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 38 ~IL~nVSfsI~~G--EivgIiGpNGSGKSTLLkiLaGLl~P~sG 79 (549)
T PRK13545 38 YALNNISFEVPEG--EIVGIIGLNGSGKSTLSNLIAGVTMPNKG 79 (549)
T ss_pred eEEeeeEEEEeCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCce
Confidence 5789999999999 89999999999999999999998866554
No 400
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=1.2e-08 Score=90.04 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=81.6
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
+..+++++++.+..| ..++|+|+||+|||||+++|+|...+.+|.... +.... ........-..+.+.+.++.
T Consensus 18 ~~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~----~~~~~~r~ig~vfQ~~~lfp 91 (351)
T PRK11432 18 SNTVIDNLNLTIKQG--TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT----HRSIQQRDICMVFQSYALFP 91 (351)
T ss_pred CeEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECC----CCCHHHCCEEEEeCCcccCC
Confidence 345788999999999 899999999999999999999998876653211 10000 00000011123444444432
Q ss_pred CCCC--------------cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214 82 FSAG--------------SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F 144 (285)
Q Consensus 82 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~ 144 (285)
.... .......+...+... +...+ .-.....+|+++++++.+.+.+...+ .++++ +
T Consensus 92 ~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~--gl~~~--~~r~~~~LSgGq~QRVaLARaL~~~P---~lLLLDEP~ 164 (351)
T PRK11432 92 HMSLGENVGYGLKMLGVPKEERKQRVKEALELV--DLAGF--EDRYVDQISGGQQQRVALARALILKP---KVLLFDEPL 164 (351)
T ss_pred CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHc--CCchh--hcCChhhCCHHHHHHHHHHHHHHcCC---CEEEEcCCc
Confidence 1100 111111222222111 11111 11112479999999999999987765 67776 7
Q ss_pred eCCCCCCCChhcHHHHhh
Q 023214 145 TGGDELEDNDETLEDYLG 162 (285)
Q Consensus 145 nk~D~~~~~~~~l~~~l~ 162 (285)
+.+|.... ..+.+.+.
T Consensus 165 s~LD~~~r--~~l~~~l~ 180 (351)
T PRK11432 165 SNLDANLR--RSMREKIR 180 (351)
T ss_pred ccCCHHHH--HHHHHHHH
Confidence 77775544 44444443
No 401
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.86 E-value=1.5e-08 Score=85.46 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=38.0
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~ 46 (285)
+..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+.
T Consensus 13 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~ 54 (247)
T TIGR00972 13 EKEALKNINLDIPKN--QVTALIGPSGCGKSTLLRSLNRMNDLV 54 (247)
T ss_pred CeeeecceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 456889999999999 899999999999999999999988654
No 402
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.86 E-value=1.1e-08 Score=95.04 Aligned_cols=148 Identities=16% Similarity=0.137 Sum_probs=80.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
+..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|.... +..... ..........-.++...|.+..
T Consensus 23 ~~~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~~~i~~v~q~~~~~~ 99 (510)
T PRK15439 23 GVEVLKGIDFTLHAG--EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR-LTPAKAHQLGIYLVPQEPLLFP 99 (510)
T ss_pred CceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCC-CCHHHHHhCCEEEEeccCccCC
Confidence 456889999999999 899999999999999999999988665543211 100000 0000000000112233332221
Q ss_pred CCCC----------cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCC
Q 023214 82 FSAG----------SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGD 148 (285)
Q Consensus 82 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D 148 (285)
.... .......+...+... +.+.. .-..-..+|+++++++.+++.+...+ +++++ ++.+|
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LSgG~~qrv~la~aL~~~p---~lllLDEPt~~LD 172 (510)
T PRK15439 100 NLSVKENILFGLPKRQASMQKMKQLLAAL--GCQLD--LDSSAGSLEVADRQIVEILRGLMRDS---RILILDEPTASLT 172 (510)
T ss_pred CCcHHHHhhcccccchHHHHHHHHHHHHc--CCCcc--ccCChhhCCHHHHHHHHHHHHHHcCC---CEEEEECCCCCCC
Confidence 1000 011112222222211 11111 11112478999999999988887655 67777 88888
Q ss_pred CCCCChhcHHHHhh
Q 023214 149 ELEDNDETLEDYLG 162 (285)
Q Consensus 149 ~~~~~~~~l~~~l~ 162 (285)
.... ..+.+++.
T Consensus 173 ~~~~--~~l~~~l~ 184 (510)
T PRK15439 173 PAET--ERLFSRIR 184 (510)
T ss_pred HHHH--HHHHHHHH
Confidence 6655 55555554
No 403
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.86 E-value=6.9e-09 Score=82.23 Aligned_cols=55 Identities=36% Similarity=0.469 Sum_probs=41.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (285)
.+++++|.+++|||||+|+|+|......+.. .|+|...+... . +..+.++||||+
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~--~--~~~~~l~DtPGi 172 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVH--L--DKKVKLLDSPGI 172 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEE--e--CCCEEEEECcCC
Confidence 6999999999999999999999887555443 45565543332 2 456899999995
No 404
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.86 E-value=1.9e-08 Score=83.39 Aligned_cols=141 Identities=19% Similarity=0.187 Sum_probs=79.9
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+..|.... +..... . . ...-.++.+.|.+..
T Consensus 12 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~--~---~-~~~~~~~~q~~~~~~ 83 (223)
T TIGR03740 12 KQTAVNNISLTVPKN--SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR--K---D-LHKIGSLIESPPLYE 83 (223)
T ss_pred CEEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccc--c---c-cccEEEEcCCCCccc
Confidence 356889999999999 899999999999999999999987665543211 000000 0 0 001122333343332
Q ss_pred CCCCcHHHHH-----------HHHHHHhhccCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeC
Q 023214 82 FSAGSEFVGK-----------EIVKCIGMAKDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTG 146 (285)
Q Consensus 82 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk 146 (285)
. .+..+... .+...+.. + +.+. ..+. ...+|.++++.+.+++.+...+ +++++ ++.
T Consensus 84 ~-~t~~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~---~~~~~~~~LS~G~~~rv~laral~~~p---~llllDEP~~~ 154 (223)
T TIGR03740 84 N-LTARENLKVHTTLLGLPDSRIDEVLNI-V-DLTN---TGKKKAKQFSLGMKQRLGIAIALLNHP---KLLILDEPTNG 154 (223)
T ss_pred c-CCHHHHHHHHHHHcCCCHHHHHHHHHH-c-CCcH---HHhhhHhhCCHHHHHHHHHHHHHhcCC---CEEEECCCccC
Confidence 1 11111100 11111110 0 1111 1111 2368999999999999887765 67777 788
Q ss_pred CCCCCCChhcHHHHhh
Q 023214 147 GDELEDNDETLEDYLG 162 (285)
Q Consensus 147 ~D~~~~~~~~l~~~l~ 162 (285)
+|.... ..+.+.+.
T Consensus 155 LD~~~~--~~l~~~L~ 168 (223)
T TIGR03740 155 LDPIGI--QELRELIR 168 (223)
T ss_pred CCHHHH--HHHHHHHH
Confidence 886655 55555554
No 405
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.86 E-value=7.9e-09 Score=97.75 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=85.9
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVVN 72 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~~ 72 (285)
.++++++|+.+++| .+++|+|+||+|||||++.|+|...|..|.... +.. ....+.++. ...
T Consensus 356 ~~il~~i~l~i~~G--~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~-----~~l 428 (582)
T PRK11176 356 VPALRNINFKIPAG--KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQN-----VHL 428 (582)
T ss_pred CccccCceEEeCCC--CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccC-----cee
Confidence 56899999999999 899999999999999999999998776653211 100 011111111 111
Q ss_pred EEeCC----CCCCCC-CCcHHHHHHHHHH-----HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEE
Q 023214 73 VIDTP----GLFDFS-AGSEFVGKEIVKC-----IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142 (285)
Q Consensus 73 liDtp----G~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ii 142 (285)
+-+|. .+..+. .+++.+..-+..+ +.....+.|.. +-+.+..+|+++++++..++..+.++ ++++
T Consensus 429 f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~--ig~~g~~LSGGqrQRi~LARall~~~---~ili 503 (582)
T PRK11176 429 FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTV--IGENGVLLSGGQRQRIAIARALLRDS---PILI 503 (582)
T ss_pred ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCce--eCCCCCcCCHHHHHHHHHHHHHHhCC---CEEE
Confidence 11111 111111 1233332222211 11111122322 22334579999999999999998766 7888
Q ss_pred E---EeCCCCCCCChhcHHHHhhh
Q 023214 143 V---FTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 143 l---~nk~D~~~~~~~~l~~~l~~ 163 (285)
+ ++.+|.... ..+.+.+..
T Consensus 504 lDEptsaLD~~t~--~~i~~~l~~ 525 (582)
T PRK11176 504 LDEATSALDTESE--RAIQAALDE 525 (582)
T ss_pred EECccccCCHHHH--HHHHHHHHH
Confidence 7 888887655 555555543
No 406
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.85 E-value=1.9e-09 Score=89.88 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=39.5
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (230)
T TIGR03410 12 QSHILRGVSLEVPKG--EVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55 (230)
T ss_pred CeEEecceeeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 356899999999999 89999999999999999999999876554
No 407
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.85 E-value=4.3e-09 Score=99.25 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=84.5
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-cce----------eEEEEEEEeeCCceEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VTS----------TCEMQRTVLKDGQVVN 72 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~-~t~----------~~~~~~~~~~~~~~~~ 72 (285)
.++++++|+.+++| .+++|+|+||+|||||++.|+|...+..|....+ ... ...+.++.. .=-.-+
T Consensus 353 ~~il~~i~~~i~~G--~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~~t 429 (574)
T PRK11160 353 QPVLKGLSLQIKAG--EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRV-HLFSAT 429 (574)
T ss_pred CcceecceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccc-hhhccc
Confidence 46899999999999 8999999999999999999999987766542211 100 011111100 000011
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHH--hhccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeC
Q 023214 73 VIDTPGLFDFSAGSEFVGKEIVKCI--GMAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTG 146 (285)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk 146 (285)
+-|...+..+..+++.+..-+..+- ..... +++.=-.+ +.+..+|+++++++...+..+.++ +++++ ++.
T Consensus 430 i~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~---~ililDE~ts~ 505 (574)
T PRK11160 430 LRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA---PLLLLDEPTEG 505 (574)
T ss_pred HHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccc
Confidence 1111122222122233222222110 00111 23322222 234579999999999999998766 77877 777
Q ss_pred CCCCCCChhcHHHHhh
Q 023214 147 GDELEDNDETLEDYLG 162 (285)
Q Consensus 147 ~D~~~~~~~~l~~~l~ 162 (285)
+|.... ..+.+.+.
T Consensus 506 lD~~t~--~~i~~~l~ 519 (574)
T PRK11160 506 LDAETE--RQILELLA 519 (574)
T ss_pred CCHHHH--HHHHHHHH
Confidence 776554 55555554
No 408
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1.9e-09 Score=91.24 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=39.2
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 57 (255)
T PRK11231 14 TKRILNDLSLSLPTG--KITALIGPNGCGKSTLLKCFARLLTPQSG 57 (255)
T ss_pred CEEEEeeeeeEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 456899999999999 89999999999999999999998766554
No 409
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=4.6e-09 Score=87.45 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=39.4
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
..+++++++.++.| ..++|+|+||+|||||+++|+|...+..|.
T Consensus 16 ~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 59 (229)
T cd03254 16 KPVLKDINFSIKPG--ETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59 (229)
T ss_pred CccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 46899999999999 899999999999999999999998766553
No 410
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=1.4e-08 Score=83.38 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=34.7
Q ss_pred CccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 9 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++|+++.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 16 ~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~gl~~~~~G 53 (211)
T cd03298 16 HFDLTFAQG--EITAIVGPSGSGKSTLLNLIAGFETPQSG 53 (211)
T ss_pred ceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 789999999 89999999999999999999999876554
No 411
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.9e-08 Score=78.27 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=77.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
.....+|+++|-.+|||||++..+--..... ..+|+.+....+.+ .+..++++|.-|....+ .
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vt-----tvPTiGfnVE~v~y-kn~~f~vWDvGGq~k~R-----------~ 76 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TVPTIGFNVETVEY-KNISFTVWDVGGQEKLR-----------P 76 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCccc-----CCCccccceeEEEE-cceEEEEEecCCCcccc-----------c
Confidence 3345899999999999999987765333322 24466666677777 68899999999975322 1
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~~ 152 (285)
....+++..++++||+|.+++..-.+. -+.+..++..+ ...|++++.||.|....
T Consensus 77 lW~~Y~~~t~~lIfVvDS~Dr~Ri~ea--k~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 77 LWKHYFQNTQGLIFVVDSSDRERIEEA--KEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred chhhhccCCcEEEEEEeCCcHHHHHHH--HHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 234568889999999998744333221 11122222221 23488899999997755
No 412
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.85 E-value=6.9e-09 Score=86.28 Aligned_cols=42 Identities=33% Similarity=0.388 Sum_probs=38.6
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++++++|+.+++| ..++|+|+||+|||||+++|+|...+..|
T Consensus 19 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 60 (228)
T cd03257 19 KALDDVSFSIKKG--ETLGLVGESGSGKSTLARAILGLLKPTSG 60 (228)
T ss_pred eeecCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 6899999999999 89999999999999999999998876554
No 413
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.85 E-value=1.7e-08 Score=85.51 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=39.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 17 ~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G 60 (257)
T PRK10619 17 EHEVLKGVSLQANAG--DVISIIGSSGSGKSTFLRCINFLEKPSEG 60 (257)
T ss_pred CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 356889999999999 89999999999999999999999876554
No 414
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1.2e-08 Score=90.23 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=39.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+..+++++|+.+..| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 16 ~~~~l~~vsl~i~~G--e~~~llG~sGsGKSTLLr~iaGl~~p~~G 59 (356)
T PRK11650 16 KTQVIKGIDLDVADG--EFIVLVGPSGCGKSTLLRMVAGLERITSG 59 (356)
T ss_pred CCEEEeeeeEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCce
Confidence 356788999999999 89999999999999999999999876655
No 415
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.85 E-value=5.1e-09 Score=90.56 Aligned_cols=123 Identities=17% Similarity=0.073 Sum_probs=72.1
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC---------CcceeEEEEEEEeeCCceEEEEeC
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS---------GVTSTCEMQRTVLKDGQVVNVIDT 76 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~---------~~t~~~~~~~~~~~~~~~~~liDt 76 (285)
+.+++|+.+..| .-++|+||||||||||+++|+|-..+++|.... +......+..+.+.--+.+++.|.
T Consensus 18 ~l~~i~l~i~~G--ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDG--EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 678899999999 899999999999999999999999877764321 111222333333322344555555
Q ss_pred CCCCCCC--CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Q 023214 77 PGLFDFS--AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK 134 (285)
Q Consensus 77 pG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~ 134 (285)
-+|.-.. ....++.+.+....... +.+..+--. + ..+|++.++++.+.+.+...
T Consensus 96 iaf~Lk~~~~~k~ei~~rV~eva~~L--~l~~lL~r~-P-~~LSGGQrQRVAlaRAlVr~ 151 (338)
T COG3839 96 IAFGLKLRGVPKAEIDKRVKEVAKLL--GLEHLLNRK-P-LQLSGGQRQRVALARALVRK 151 (338)
T ss_pred hhhhhhhCCCchHHHHHHHHHHHHHc--CChhHHhcC-c-ccCChhhHHHHHHHHHHhcC
Confidence 5554211 11223333333333211 122211111 1 35777788888777777655
No 416
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.84 E-value=1e-08 Score=78.81 Aligned_cols=56 Identities=29% Similarity=0.479 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (285)
.+++++|.+|+|||||+|+|++...+.. ....+.|..... ... +..+.++||||+.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~i~DtpG~~ 139 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQT--IFL--TPTITLCDCPGLV 139 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEE--EEe--CCCEEEEECCCcC
Confidence 3899999999999999999999876432 223344544332 222 3368999999986
No 417
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.84 E-value=1.1e-08 Score=97.36 Aligned_cols=148 Identities=17% Similarity=0.113 Sum_probs=87.3
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-----------cceeEEEEEEEeeCCceEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-----------VTSTCEMQRTVLKDGQVVN 72 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~ 72 (285)
+++.+|+|+.+++| .+|+++|++|||||||++.|+|-..|..|..... ......+..++. -=..-+
T Consensus 486 ~~vL~~isL~I~~G--e~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~-~Lf~gS 562 (709)
T COG2274 486 PPVLEDLSLEIPPG--EKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP-FLFSGS 562 (709)
T ss_pred cchhhceeEEeCCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccc-hhhcCc
Confidence 46889999999999 8999999999999999999999988766542110 000111111100 000011
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhhc------cCCccEEEE-EEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214 73 VIDTPGLFDFSAGSEFVGKEIVKCIGMA------KDGIHAVLV-VFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV-- 143 (285)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~-v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil-- 143 (285)
+-|---+.++..+.++ +..++..+ ..-|.+.-. |-..+..+|++.++++..++....++ +++++
T Consensus 563 I~eNi~l~~p~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P---~ILlLDE 635 (709)
T COG2274 563 IRENIALGNPEATDEE----IIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP---KILLLDE 635 (709)
T ss_pred HHHHHhcCCCCCCHHH----HHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC---CEEEEeC
Confidence 2222222233233232 22222211 111222222 33456689999999999999998876 77777
Q ss_pred -EeCCCCCCCChhcHHHHhhh
Q 023214 144 -FTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 144 -~nk~D~~~~~~~~l~~~l~~ 163 (285)
++.+|..+. ..+.+.+..
T Consensus 636 aTSaLD~~sE--~~I~~~L~~ 654 (709)
T COG2274 636 ATSALDPETE--AIILQNLLQ 654 (709)
T ss_pred cccccCHhHH--HHHHHHHHH
Confidence 888886655 455555543
No 418
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.84 E-value=2.5e-08 Score=75.71 Aligned_cols=120 Identities=17% Similarity=0.083 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.|+.+||.+-+|||+|++.++....+. .+.+.+.+..-..-++...| .++.++||.|... ++...
T Consensus 9 frlivigdstvgkssll~~ft~gkfae--lsdptvgvdffarlie~~pg~riklqlwdtagqer-----------frsit 75 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAE--LSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQER-----------FRSIT 75 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccc--cCCCccchHHHHHHHhcCCCcEEEEEEeeccchHH-----------HHHHH
Confidence 699999999999999999998655322 22222222211122233223 4588999999643 34444
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++|+..-++++|+|.+++-+-+. ..|+.......+.+...-+++|.+|.|+.+.
T Consensus 76 ksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq 131 (213)
T KOG0091|consen 76 KSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ 131 (213)
T ss_pred HHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh
Confidence 566777789999999987877665 4666667666664443345566899998754
No 419
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.84 E-value=1.2e-08 Score=84.89 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=36.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|..
T Consensus 12 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 12 DKHALKDISLDIPKG--EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence 356899999999999 899999999999999999999987
No 420
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=5.4e-09 Score=87.44 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=39.0
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 14 ~~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 56 (236)
T cd03253 14 RPVLKDVSFTIPAG--KKVAIVGPSGSGKSTILRLLFRFYDVSSG 56 (236)
T ss_pred CceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 46899999999999 89999999999999999999998876554
No 421
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.84 E-value=1.6e-08 Score=86.05 Aligned_cols=42 Identities=21% Similarity=0.202 Sum_probs=38.0
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~ 46 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+.
T Consensus 16 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p~ 57 (262)
T PRK09984 16 QHQALHAVDLNIHHG--EMVALLGPSGSGKSTLLRHLSGLITGD 57 (262)
T ss_pred CeEEEecceEEEcCC--cEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 456889999999999 899999999999999999999987653
No 422
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=3.8e-09 Score=90.20 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=39.2
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 22 ~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 64 (271)
T PRK13632 22 NNALKNVSFEINEG--EYVAILGHNGSGKSTISKILTGLLKPQSG 64 (271)
T ss_pred ccceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 57899999999999 89999999999999999999999876554
No 423
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.83 E-value=4.2e-08 Score=88.62 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.||+|+|.-|+|||||+-+++....++.-+... .++.. .-..+.....+++||+.-.+ +.. ++.
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP----advtPe~vpt~ivD~ss~~~---~~~--------~l~ 74 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP----ADVTPENVPTSIVDTSSDSD---DRL--------CLR 74 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC----CccCcCcCceEEEecccccc---hhH--------HHH
Confidence 799999999999999999999888654322211 11211 11122344588999984332 111 222
Q ss_pred hccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
.....+|++.+|+..++ .++.-...||-+++..+|+....|+|+|.||.|.....
T Consensus 75 ~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 75 KEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNE 131 (625)
T ss_pred HHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccc
Confidence 33456789999987753 35666679999999999887778999999999988663
No 424
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=6.6e-08 Score=71.58 Aligned_cols=125 Identities=14% Similarity=0.178 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+..++|..|+|||.|+..++..... ...+..+.+......++.++ ..++.+|||.|.. .++....
T Consensus 12 fkyiiigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqkiklqiwdtagqe-----------rfravtr 78 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE-----------RFRAVTR 78 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcEEEEEEeecccHH-----------HHHHHHH
Confidence 68899999999999999998866642 22333444455555566622 2458899999954 3445556
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHH
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED 159 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~ 159 (285)
++++++.+.++|+|+..+-+-.. ..|+.-.+.+-.+.. -++++.||.|+........++
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpnt--~i~lignkadle~qrdv~yee 138 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT--VIFLIGNKADLESQRDVTYEE 138 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCce--EEEEecchhhhhhcccCcHHH
Confidence 67899999999999974544443 345555555433322 344558999976443234333
No 425
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.83 E-value=3.9e-09 Score=89.40 Aligned_cols=44 Identities=27% Similarity=0.353 Sum_probs=39.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 13 ~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G 56 (256)
T TIGR03873 13 GRLIVDGVDVTAPPG--SLTGLLGPNGSGKSTLLRLLAGALRPDAG 56 (256)
T ss_pred CEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 456899999999999 89999999999999999999998766554
No 426
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.83 E-value=2.1e-08 Score=88.70 Aligned_cols=149 Identities=16% Similarity=0.174 Sum_probs=84.2
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEe---eCCceEEEEeCC
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVL---KDGQVVNVIDTP 77 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~---~~~~~~~liDtp 77 (285)
|+..+++++||++..| ..++|+|+||+|||||+++|+|...+.+|.... +..... ...... ....-.++++.|
T Consensus 4 ~~~~~l~~vs~~i~~G--ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~-~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKG--EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK-QSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCC--CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCc-CCHHHHHHHHhCcEEEEECCC
Confidence 4567889999999999 899999999999999999999998776553211 100000 000000 001123455566
Q ss_pred CCCCCCCCcHHH--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE
Q 023214 78 GLFDFSAGSEFV--------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 143 (285)
Q Consensus 78 G~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil 143 (285)
+++......+.+ ...+...+.. -+.+. +.-.....+|++.++++..++.+..++ +++++
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~--vgL~~--~~~~~p~~LSGGq~QRV~lARAL~~~p---~iLLl 153 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKL--VGLEE--YEHRYPDELSGGMQQRVGLARALAAEP---DILLM 153 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--cCCch--hhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEE
Confidence 665321111111 1111111111 11111 111112469999999999999887665 67777
Q ss_pred ---EeCCCCCCCChhcHHHHhh
Q 023214 144 ---FTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 144 ---~nk~D~~~~~~~~l~~~l~ 162 (285)
++.+|-... ..+.+.+.
T Consensus 154 DEP~saLD~~~r--~~l~~~l~ 173 (363)
T TIGR01186 154 DEAFSALDPLIR--DSMQDELK 173 (363)
T ss_pred eCCcccCCHHHH--HHHHHHHH
Confidence 777776554 45555443
No 427
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.83 E-value=7.5e-09 Score=86.69 Aligned_cols=43 Identities=33% Similarity=0.316 Sum_probs=38.9
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+++| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 16 ~~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G 58 (238)
T cd03249 16 VPILKGLSLTIPPG--KTVALVGSSGCGKSTVVSLLERFYDPTSG 58 (238)
T ss_pred ccceeceEEEecCC--CEEEEEeCCCCCHHHHHHHHhccCCCCCC
Confidence 35899999999999 89999999999999999999999876655
No 428
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.83 E-value=3.6e-08 Score=85.59 Aligned_cols=87 Identities=20% Similarity=0.090 Sum_probs=53.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe---------------------e--CCceEEEEeCCC
Q 023214 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---------------------K--DGQVVNVIDTPG 78 (285)
Q Consensus 22 i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~---------------------~--~~~~~~liDtpG 78 (285)
|++||.+++|||||+|+|++........ ..+|..+......+ . ....+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~--pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANY--PFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCC--CCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 5899999999999999999876422211 12333333222211 0 124689999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 023214 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (285)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (285)
+...... ...+...+...+..+|++++|+|+.
T Consensus 79 lv~ga~~----~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHE----GKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccc----hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 9642211 2223333334456779999999985
No 429
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=4.5e-09 Score=89.68 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=38.2
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.+++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 23 ~~l~~isl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G 64 (269)
T PRK13648 23 FTLKDVSFNIPKG--QWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64 (269)
T ss_pred cceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 4789999999999 89999999999999999999999866554
No 430
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.82 E-value=7.8e-09 Score=95.97 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=40.0
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+.++++++++.+..| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 16 ~~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~ 60 (501)
T PRK10762 16 GVKALSGAALNVYPG--RVMALVGENGAGKSTMMKVLTGIYTRDAGS 60 (501)
T ss_pred CeEEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 456899999999999 899999999999999999999998766553
No 431
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=3.5e-09 Score=95.08 Aligned_cols=146 Identities=14% Similarity=0.080 Sum_probs=84.6
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC----------CCcceeEEEEEEEeeCCceEEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----------SGVTSTCEMQRTVLKDGQVVNV 73 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~l 73 (285)
+++.+++|++++.| .+|+++|+||+||||++|+|+.-........- .+.-....+.++. ...+
T Consensus 365 ~~iL~gvsf~I~kG--ekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd-----~~LF 437 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKG--EKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQD-----SVLF 437 (591)
T ss_pred CceecceeEEecCC--CEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCc-----cccc
Confidence 45899999999999 89999999999999999999965442211100 0111111122221 1222
Q ss_pred Ee----CCCCCCCCCCcHHHHHHHHHHHh--hccCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214 74 ID----TPGLFDFSAGSEFVGKEIVKCIG--MAKDGIHAV-LVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--- 143 (285)
Q Consensus 74 iD----tpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--- 143 (285)
-| ...++.+..+.+.+.+...++-. ....-+++. -.|-.-+..+|+++++++.+++..+.++ |++++
T Consensus 438 ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda---~Il~~DEa 514 (591)
T KOG0057|consen 438 NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA---PILLLDEA 514 (591)
T ss_pred chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC---CeEEecCc
Confidence 22 23445555555544333222210 000012221 1122224569999999999999988766 78887
Q ss_pred EeCCCCCCCChhcHHHHh
Q 023214 144 FTGGDELEDNDETLEDYL 161 (285)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l 161 (285)
+++.|..+. ..+-+.+
T Consensus 515 TS~LD~~TE--~~i~~~i 530 (591)
T KOG0057|consen 515 TSALDSETE--REILDMI 530 (591)
T ss_pred ccccchhhH--HHHHHHH
Confidence 888886654 4444443
No 432
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.82 E-value=1.4e-08 Score=82.33 Aligned_cols=42 Identities=24% Similarity=0.183 Sum_probs=36.5
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
..+++ +++.+++| ..++|+|+||+|||||+++|+|...+..|
T Consensus 14 ~~l~~-vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (195)
T PRK13541 14 KNLFD-LSITFLPS--AITYIKGANGCGKSSLLRMIAGIMQPSSG 55 (195)
T ss_pred cEEEE-EEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 44565 89999999 89999999999999999999998766554
No 433
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.82 E-value=9.2e-09 Score=97.46 Aligned_cols=149 Identities=19% Similarity=0.235 Sum_probs=84.1
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (285)
.++++++|+++++| .+|+|+|++|+|||||++.|+|...|..|.... +.... .+....+ ...-..+...|-+++.
T Consensus 354 ~~il~~i~l~i~~G--e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~-~~~~~~l-~~~i~~v~Q~~~lF~~ 429 (592)
T PRK10790 354 NLVLQNINLSVPSR--GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS-SLSHSVL-RQGVAMVQQDPVVLAD 429 (592)
T ss_pred CceeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh-hCCHHHH-HhheEEEccCCccccc
Confidence 46899999999999 899999999999999999999998776543211 00000 0000000 0000111222222211
Q ss_pred ----------CCCcHHHHHHHHH-----HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214 83 ----------SAGSEFVGKEIVK-----CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F 144 (285)
Q Consensus 83 ----------~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~ 144 (285)
..+++.+.+-+.. ++.....+.|.. +-..+..+|+++++++..++..+.++ +++++ +
T Consensus 430 Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~--i~e~g~~LSGGqrQRialARaLl~~~---~illlDEpt 504 (592)
T PRK10790 430 TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTP--LGEQGNNLSVGQKQLLALARVLVQTP---QILILDEAT 504 (592)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccccc--ccCCCCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCc
Confidence 1122222221111 111111122332 22335579999999999999998765 78887 7
Q ss_pred eCCCCCCCChhcHHHHhhh
Q 023214 145 TGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 145 nk~D~~~~~~~~l~~~l~~ 163 (285)
+.+|.... ..+.+.+.+
T Consensus 505 s~LD~~t~--~~i~~~l~~ 521 (592)
T PRK10790 505 ANIDSGTE--QAIQQALAA 521 (592)
T ss_pred ccCCHHHH--HHHHHHHHH
Confidence 77886554 555555543
No 434
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.82 E-value=1.9e-08 Score=82.77 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=36.7
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.+.++++.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 13 ~~~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (213)
T TIGR01277 13 LPMEFDLNVADG--EIVAIMGPSGAGKSTLLNLIAGFIEPASG 53 (213)
T ss_pred cceeeEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 356889999999 89999999999999999999999876655
No 435
>PRK12288 GTPase RsgA; Reviewed
Probab=98.82 E-value=1.6e-08 Score=88.89 Aligned_cols=62 Identities=27% Similarity=0.411 Sum_probs=43.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (285)
..++|+|.+|+|||||+|+|++.....++.... .+|+....+.... + ..|+||||+..+..+
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~--~--~~liDTPGir~~~l~ 273 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH--G--GDLIDSPGVREFGLW 273 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC--C--CEEEECCCCCcccCC
Confidence 468999999999999999999987765543322 2455544444422 2 359999999876543
No 436
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.82 E-value=1.2e-08 Score=85.09 Aligned_cols=44 Identities=25% Similarity=0.221 Sum_probs=39.8
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 12 ~~~il~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~g~~~~~~G 55 (232)
T cd03300 12 GFVALDGVSLDIKEG--EFFTLLGPSGCGKTTLLRLIAGFETPTSG 55 (232)
T ss_pred CeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 457899999999999 89999999999999999999999876554
No 437
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.81 E-value=1.4e-08 Score=85.07 Aligned_cols=43 Identities=28% Similarity=0.294 Sum_probs=39.1
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 15 ~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (237)
T cd03252 15 PVILDNISLRIKPG--EVVGIVGRSGSGKSTLTKLIQRFYVPENG 57 (237)
T ss_pred ccceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 46899999999999 89999999999999999999999876654
No 438
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.81 E-value=2.3e-08 Score=76.86 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=40.6
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
++.++.+++|+.+.+| ..|+++||+|+|||||++.++.-..+.+|.
T Consensus 14 ~~a~il~~isl~v~~G--e~iaitGPSG~GKStllk~va~Lisp~~G~ 59 (223)
T COG4619 14 GDAKILNNISLSVRAG--EFIAITGPSGCGKSTLLKIVASLISPTSGT 59 (223)
T ss_pred CCCeeecceeeeecCC--ceEEEeCCCCccHHHHHHHHHhccCCCCce
Confidence 4678899999999999 899999999999999999999877666543
No 439
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.81 E-value=9e-09 Score=87.01 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=43.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (285)
...+++|.+|+|||||+|.|++.....++. ....+|+....++.. ..-.|+||||+..+..
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~----~gG~iiDTPGf~~~~l 231 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP----GGGWIIDTPGFRSLGL 231 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC----CCCEEEeCCCCCccCc
Confidence 689999999999999999999866543332 122445555554443 2347899999987654
No 440
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.81 E-value=1.2e-08 Score=96.35 Aligned_cols=149 Identities=17% Similarity=0.088 Sum_probs=84.0
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVVN 72 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~~ 72 (285)
.++++++|+.+++| .+++++|+||+|||||++.|+|...+..|.... +.. ..+.+.++.. .--+-+
T Consensus 353 ~~iL~~inl~i~~G--e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~-~lf~~T 429 (576)
T TIGR02204 353 QPALDGLNLTVRPG--ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDP-VLFAAS 429 (576)
T ss_pred CccccceeEEecCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCC-cccccc
Confidence 46889999999999 899999999999999999999988766543211 000 0111111110 000001
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHH----HhhccC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214 73 VIDTPGLFDFSAGSEFVGKEIVKC----IGMAKD-GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F 144 (285)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~ 144 (285)
+-|--.++++..+++.+...+..+ +...+| +.+. .+-+.+..+|+++++++..++..+.++ +++++ +
T Consensus 430 i~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t--~i~~~g~~LSgGq~Qrl~laRal~~~~---~ililDEpt 504 (576)
T TIGR02204 430 VMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDT--YLGERGVTLSGGQRQRIAIARAILKDA---PILLLDEAT 504 (576)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCc--eeCCCCCcCCHHHHHHHHHHHHHHhCC---CeEEEeCcc
Confidence 111111111112222222222111 011122 2222 123345579999999999999988765 77877 8
Q ss_pred eCCCCCCCChhcHHHHhh
Q 023214 145 TGGDELEDNDETLEDYLG 162 (285)
Q Consensus 145 nk~D~~~~~~~~l~~~l~ 162 (285)
+..|.... ..+.+.+.
T Consensus 505 s~lD~~~~--~~i~~~l~ 520 (576)
T TIGR02204 505 SALDAESE--QLVQQALE 520 (576)
T ss_pred cccCHHHH--HHHHHHHH
Confidence 88886654 44555444
No 441
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.81 E-value=1.6e-08 Score=82.12 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=42.6
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
|++.+++++++.+++| ...+++|++|+|||||+++|+|...|..|.
T Consensus 19 G~~~Ild~v~l~V~~G--ei~~iiGgSGsGKStlLr~I~Gll~P~~Ge 64 (263)
T COG1127 19 GDRVILDGVDLDVPRG--EILAILGGSGSGKSTLLRLILGLLRPDKGE 64 (263)
T ss_pred CCEEEecCceeeecCC--cEEEEECCCCcCHHHHHHHHhccCCCCCCe
Confidence 6788999999999999 899999999999999999999999887764
No 442
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.81 E-value=6.7e-09 Score=86.19 Aligned_cols=42 Identities=26% Similarity=0.272 Sum_probs=38.4
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++++++|+++.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 22 ~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G 63 (224)
T TIGR02324 22 PVLKNVSLTVNAG--ECVALSGPSGAGKSTLLKSLYANYLPDSG 63 (224)
T ss_pred EEEecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 6899999999999 89999999999999999999998766554
No 443
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.81 E-value=3.3e-08 Score=81.01 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=39.0
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+..+++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 14 ~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (207)
T PRK13539 14 GRVLFSGLSFTLAAG--EALVLTGPNGSGKTTLLRLIAGLLPPAAG 57 (207)
T ss_pred CeEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 345789999999999 89999999999999999999998766554
No 444
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.81 E-value=2.1e-08 Score=85.06 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=37.2
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 45 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~ 45 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+
T Consensus 16 ~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~laGl~~~ 56 (258)
T PRK14241 16 SFHAVEDVNLNIEPR--SVTAFIGPSGCGKSTVLRTLNRMHEV 56 (258)
T ss_pred CEeeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhccCCc
Confidence 456899999999999 89999999999999999999998753
No 445
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=1.3e-08 Score=85.00 Aligned_cols=42 Identities=36% Similarity=0.389 Sum_probs=38.6
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 16 ~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (234)
T cd03251 16 PVLRDISLDIPAG--ETVALVGPSGSGKSTLVNLIPRFYDVDSG 57 (234)
T ss_pred cceeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhccccCCCC
Confidence 6899999999999 89999999999999999999999876555
No 446
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.81 E-value=6.9e-09 Score=100.27 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=85.6
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceE
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVV 71 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~ 71 (285)
++++++++|+.+++| .+|+|+|++|+|||||++.|+|...|..|.... +.. ..+.+.++.. .=-.-
T Consensus 486 ~~~iL~~isl~i~~G--~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~-~lf~g 562 (708)
T TIGR01193 486 GSNILSDISLTIKMN--SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP-YIFSG 562 (708)
T ss_pred CCcceeceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCc-eehhH
Confidence 357899999999999 899999999999999999999988766553211 100 0111111110 00000
Q ss_pred EEEeCCCCC-CCCCCcHHHHHHHHHHH--hhccCCccEEEE-EEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214 72 NVIDTPGLF-DFSAGSEFVGKEIVKCI--GMAKDGIHAVLV-VFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F 144 (285)
Q Consensus 72 ~liDtpG~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~-v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~ 144 (285)
++-|-.-+. ++..+++.+.+-+..+- .....-+++.=- +-+.+..+|+++++++..++..+.++ +++++ +
T Consensus 563 TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p---~iliLDE~T 639 (708)
T TIGR01193 563 SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS---KVLILDEST 639 (708)
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCcc
Confidence 111111111 11122222222221110 000011222212 23345679999999999999988766 78887 7
Q ss_pred eCCCCCCCChhcHHHHhhh
Q 023214 145 TGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 145 nk~D~~~~~~~~l~~~l~~ 163 (285)
+.+|.... ..+.+.+..
T Consensus 640 s~LD~~te--~~i~~~L~~ 656 (708)
T TIGR01193 640 SNLDTITE--KKIVNNLLN 656 (708)
T ss_pred ccCCHHHH--HHHHHHHHH
Confidence 88886554 555555553
No 447
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=1.9e-08 Score=85.21 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=40.2
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
|+..++.++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 21 ~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~iaG~~~~~~G 65 (257)
T PRK14246 21 NDKAILKDITIKIPNN--SIFGIMGPSGSGKSTLLKVLNRLIEIYDS 65 (257)
T ss_pred CCceeEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence 4567899999999999 89999999999999999999998876654
No 448
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.80 E-value=5.6e-09 Score=97.95 Aligned_cols=140 Identities=17% Similarity=0.089 Sum_probs=76.7
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (285)
+++++++|+.+++| .+++|+|+||+|||||++.|+|...+..|.... +.... ......+ ...-..+...|-+++.
T Consensus 336 ~~~l~~i~~~i~~G--~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~-~~~~~~~-~~~i~~v~q~~~lf~~ 411 (547)
T PRK10522 336 GFSVGPINLTIKRG--ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVT-AEQPEDY-RKLFSAVFTDFHLFDQ 411 (547)
T ss_pred CeEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC-CCCHHHH-hhheEEEecChhHHHH
Confidence 45899999999999 899999999999999999999988766553211 10000 0000000 0000111111211110
Q ss_pred CC-C--cHHHHHHHHHHHhhccCCccEEEEEEeC---CCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCC
Q 023214 83 SA-G--SEFVGKEIVKCIGMAKDGIHAVLVVFSV---RSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELED 152 (285)
Q Consensus 83 ~~-~--~~~~~~~~~~~~~~~~~~~~~~l~v~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~ 152 (285)
.. . .......+..++... + .+..+-.-+. +..+|+++++++...+..+.++ +++++ ++..|....
T Consensus 412 ti~~n~~~~~~~~~~~~~~~~-~-l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~---~ililDE~ts~LD~~~~ 485 (547)
T PRK10522 412 LLGPEGKPANPALVEKWLERL-K-MAHKLELEDGRISNLKLSKGQKKRLALLLALAEER---DILLLDEWAADQDPHFR 485 (547)
T ss_pred hhccccCchHHHHHHHHHHHc-C-CchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEECCCCCCCHHHH
Confidence 00 0 001112233333222 1 1111111111 3579999999999999988765 77777 777775543
No 449
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.80 E-value=7.9e-09 Score=98.74 Aligned_cols=149 Identities=11% Similarity=0.050 Sum_probs=81.5
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC--
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-- 80 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~-- 80 (285)
+.++++++|+.+++| ..++|+|+||+|||||++.|+|...+..|...........+..+.. .-...++.|..-+.
T Consensus 464 ~~~il~~isl~i~~G--e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~-~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 464 GDVLIESLSFEVPSG--NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRP-YMTLGTLRDQIIYPDS 540 (659)
T ss_pred CCeeeecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCC-CCCCcCHHHHHhcCCC
Confidence 346899999999999 8999999999999999999999876544432111111111111110 00000111111110
Q ss_pred -----CCCCCcHHHHHHHHHHHhh-----ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCC
Q 023214 81 -----DFSAGSEFVGKEIVKCIGM-----AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGG 147 (285)
Q Consensus 81 -----~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~ 147 (285)
........+ ..+...+.. ...+.|. +.+....+|+++++++..++.++.++ +++++ ++.+
T Consensus 541 ~~~~~~~~~~~~~i-~~~l~~~~l~~~~~~~~g~~~---~~~~~~~LSgGqkQRl~iARal~~~p---~illLDEpts~L 613 (659)
T TIGR00954 541 SEDMKRRGLSDKDL-EQILDNVQLTHILEREGGWSA---VQDWMDVLSGGEKQRIAMARLFYHKP---QFAILDECTSAV 613 (659)
T ss_pred hhhhhccCCCHHHH-HHHHHHcCCHHHHhhcCCccc---ccccccCCCHHHHHHHHHHHHHHcCC---CEEEEeCCccCC
Confidence 000111111 111111100 0011122 12333589999999999999998765 77777 8888
Q ss_pred CCCCCChhcHHHHhhh
Q 023214 148 DELEDNDETLEDYLGR 163 (285)
Q Consensus 148 D~~~~~~~~l~~~l~~ 163 (285)
|.... ..+.+.+..
T Consensus 614 D~~~~--~~l~~~l~~ 627 (659)
T TIGR00954 614 SVDVE--GYMYRLCRE 627 (659)
T ss_pred CHHHH--HHHHHHHHH
Confidence 86544 555555553
No 450
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=7.9e-09 Score=93.50 Aligned_cols=201 Identities=16% Similarity=0.191 Sum_probs=123.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccc----------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA----------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
...+|+++.+-.+||||+-+.++-........ ...++|.........| .+.++++|||||+.|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPGHVD 116 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCCcee
Confidence 44799999999999999998877322211100 1137777777777778 688999999999999
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChh-cHHHH
Q 023214 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE-TLEDY 160 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~-~l~~~ 160 (285)
|....+ .++...|+.++|+++..++.......++.++.. + + |.+..+||+|....+.- .+...
T Consensus 117 FT~EVe-----------RALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-~--v--P~i~FiNKmDRmGa~~~~~l~~i 180 (721)
T KOG0465|consen 117 FTFEVE-----------RALRVLDGAVLVLDAVAGVESQTETVWRQMKRY-N--V--PRICFINKMDRMGASPFRTLNQI 180 (721)
T ss_pred EEEEeh-----------hhhhhccCeEEEEEcccceehhhHHHHHHHHhc-C--C--CeEEEEehhhhcCCChHHHHHHH
Confidence 865433 234556888899988668888888888888765 3 2 89999999999876422 22222
Q ss_pred hhhcCCchhH-----hhHHhhhhHHHHHHhcCCC-CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023214 161 LGRECPKPLK-----KGATKLRDQQFEVDSLKGY-SKREISE-LKEQMHKSYEDQLKRITEMVESKLKETTTRLEQQLAE 233 (285)
Q Consensus 161 l~~~~~~~l~-----~~~~~~~~~~~~i~~~~gy-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 233 (285)
.......++. ..-..+.++.++++...-| ....... ...++++++++...+.++++.+-+..-.++|-+.+.+
T Consensus 181 ~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLe 260 (721)
T KOG0465|consen 181 RTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLE 260 (721)
T ss_pred HhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhc
Confidence 2221111111 1122344455444432112 1111111 1134566677666666666666666666666666555
Q ss_pred HH
Q 023214 234 EQ 235 (285)
Q Consensus 234 ~~ 235 (285)
++
T Consensus 261 e~ 262 (721)
T KOG0465|consen 261 EE 262 (721)
T ss_pred cC
Confidence 43
No 451
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.80 E-value=1.1e-08 Score=83.41 Aligned_cols=136 Identities=13% Similarity=0.074 Sum_probs=76.6
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (285)
++.+++++++..| ..++|+|++|+|||||.++|+|-..+..|.... |.................+++=|-.+-..+.
T Consensus 21 ~~l~~VS~~i~~G--e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERG--ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCC--CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 4789999999999 899999999999999999999999877654311 1000000000001022334444444444443
Q ss_pred CCcHHHH-------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCC
Q 023214 84 AGSEFVG-------------KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGG 147 (285)
Q Consensus 84 ~~~~~~~-------------~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~ 147 (285)
.+...+. +++...+.. ..-+..++.-.+ +.+|+++++++..++.+...+ .++|+ ++-+
T Consensus 99 ~tv~~~l~Epl~~~~~~~~~~~i~~~L~~-VgL~~~~l~R~P--~eLSGGQ~QRiaIARAL~~~P---klLIlDEptSaL 172 (252)
T COG1124 99 RTVGRILSEPLRPHGLSKSQQRIAELLDQ-VGLPPSFLDRRP--HELSGGQRQRIAIARALIPEP---KLLILDEPTSAL 172 (252)
T ss_pred hhHHHHHhhhhccCCccHHHHHHHHHHHH-cCCCHHHHhcCc--hhcChhHHHHHHHHHHhccCC---CEEEecCchhhh
Confidence 3322211 112222211 111112222222 469999999999999886654 55555 4444
Q ss_pred C
Q 023214 148 D 148 (285)
Q Consensus 148 D 148 (285)
|
T Consensus 173 D 173 (252)
T COG1124 173 D 173 (252)
T ss_pred c
Confidence 4
No 452
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=1.2e-08 Score=94.89 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=37.9
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 45 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~ 45 (285)
++..+++++|+.+..| ..++|+|+||||||||+++|+|...+
T Consensus 16 ~~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 16 GGVKALDNVSLKVRAG--EIVSLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred CCeEeecceeEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3456899999999999 89999999999999999999998764
No 453
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=6.5e-09 Score=88.92 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=39.0
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.+++.++|+++.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 15 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (274)
T PRK13644 15 TPALENINLVIKKG--EYIGIIGKNGSGKSTLALHLNGLLRPQKG 57 (274)
T ss_pred CceeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 46899999999999 89999999999999999999998766554
No 454
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.80 E-value=1.1e-08 Score=94.80 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=39.9
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+.++++++|+.+..| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 10 ~~~il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 54 (491)
T PRK10982 10 GVKALDNVNLKVRPH--SIHALMGENGAGKSTLLKCLFGIYQKDSGS 54 (491)
T ss_pred CEEeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCceE
Confidence 456899999999999 899999999999999999999988765543
No 455
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=4.6e-08 Score=83.98 Aligned_cols=42 Identities=24% Similarity=0.208 Sum_probs=38.4
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 21 ~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G 62 (280)
T PRK13649 21 RALFDVNLTIEDG--SYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62 (280)
T ss_pred ceeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 5899999999999 89999999999999999999998766554
No 456
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=1.9e-08 Score=84.94 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=37.1
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 45 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~ 45 (285)
+.++++++|+++.+| ..++|+|+||+|||||+++|+|...+
T Consensus 15 ~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~ 55 (250)
T PRK14247 15 QVEVLDGVNLEIPDN--TITALMGPSGSGKSTLLRVFNRLIEL 55 (250)
T ss_pred CeeeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence 456889999999999 89999999999999999999998753
No 457
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.80 E-value=1.3e-08 Score=84.18 Aligned_cols=146 Identities=15% Similarity=0.114 Sum_probs=81.0
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee----EEE-EE--EEeeCCceEEEEeCCCC
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST----CEM-QR--TVLKDGQVVNVIDTPGL 79 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~----~~~-~~--~~~~~~~~~~liDtpG~ 79 (285)
-.++||+++.| -+++++|+||+||||++++|+|...|.+|...-+--.. ..+ .+ ... ....-..||.|-.
T Consensus 40 Vqdisf~IP~G--~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~-gqk~ql~Wdlp~~ 116 (325)
T COG4586 40 VQDISFEIPKG--EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVM-GQKLQLWWDLPAL 116 (325)
T ss_pred hheeeeecCCC--cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHh-hhhheeeeechhh
Confidence 46889999999 89999999999999999999999988776432110000 000 00 001 2233567888844
Q ss_pred CCCCCC------cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCC
Q 023214 80 FDFSAG------SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDEL 150 (285)
Q Consensus 80 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~ 150 (285)
.+.... +++..++-...+... -+.+.+ +-..-..+|-+++.+.+++-.++.++ .++++ +--+|-.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~ei-Ldl~~~--lk~~vr~LSlGqRmraeLaaaLLh~p---~VLfLDEpTvgLDV~ 190 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEI-LDLEGF--LKWPVRKLSLGQRMRAELAAALLHPP---KVLFLDEPTVGLDVN 190 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHH-hcchhh--hhhhhhhccchHHHHHHHHHHhcCCC---cEEEecCCccCcchh
Confidence 332100 011011111111110 011221 11122478888888888888877654 45555 4445544
Q ss_pred CCChhcHHHHhhh
Q 023214 151 EDNDETLEDYLGR 163 (285)
Q Consensus 151 ~~~~~~l~~~l~~ 163 (285)
.. ..+.+|++.
T Consensus 191 aq--~~ir~Flke 201 (325)
T COG4586 191 AQ--ANIREFLKE 201 (325)
T ss_pred HH--HHHHHHHHH
Confidence 44 667777764
No 458
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.80 E-value=1.2e-08 Score=83.67 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=38.7
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++++.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 21 ~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 63 (207)
T cd03369 21 PPVLKNVSFKVKAG--EKIGIVGRTGAGKSTLILALFRFLEAEEG 63 (207)
T ss_pred cccccCceEEECCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 36899999999999 89999999999999999999998766554
No 459
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.80 E-value=7.9e-07 Score=85.95 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=24.8
Q ss_pred cccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
++.+..+ ..+++|+||||+|||||+++|.+.
T Consensus 315 di~l~~~-~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 315 TLNLKFE-KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eeEeCCC-ceEEEEECCCCCCchHHHHHHHHH
Confidence 4444433 268999999999999999999877
No 460
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.80 E-value=1.3e-09 Score=88.62 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=93.3
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-C--c----ceeEEEEEEEeeCCceEEEE
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-G--V----TSTCEMQRTVLKDGQVVNVI 74 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~--~----t~~~~~~~~~~~~~~~~~li 74 (285)
|+..+.+|++|.+++| ...+++|+||+||||++++|+|-..+..|.... + . .....|.+-+-.--+++++.
T Consensus 13 g~k~av~~isf~v~~G--~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~ 90 (300)
T COG4152 13 GDKKAVDNISFEVPPG--EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVE 90 (300)
T ss_pred CceeeecceeeeecCC--eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHH
Confidence 4566788999999999 899999999999999999999988776543211 1 0 00111111110011234444
Q ss_pred eCCCCCCC--CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCC
Q 023214 75 DTPGLFDF--SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDE 149 (285)
Q Consensus 75 DtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~ 149 (285)
|..-|... .....++...+..++.. .+..-+.-+--..+|.+..+-++++......+ -.+|+ |+-+|=
T Consensus 91 dql~yla~LkGm~~~e~~~~~~~wLer----~~i~~~~~~kIk~LSKGnqQKIQfisaviHeP---eLlILDEPFSGLDP 163 (300)
T COG4152 91 DQLKYLAELKGMPKAEIQKKLQAWLER----LEIVGKKTKKIKELSKGNQQKIQFISAVIHEP---ELLILDEPFSGLDP 163 (300)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHh----ccccccccchHHHhhhhhhHHHHHHHHHhcCC---CEEEecCCccCCCh
Confidence 43322211 01123334444444332 23323333332468888888888888887765 46666 777775
Q ss_pred CCCChhcHHHHhhh--cCCchhH---hhHHhhhhHHH
Q 023214 150 LEDNDETLEDYLGR--ECPKPLK---KGATKLRDQQF 181 (285)
Q Consensus 150 ~~~~~~~l~~~l~~--~~~~~l~---~~~~~~~~~~~ 181 (285)
... +.+.+.+.. ..+..+. -.|.++.++.+
T Consensus 164 VN~--elLk~~I~~lk~~GatIifSsH~Me~vEeLCD 198 (300)
T COG4152 164 VNV--ELLKDAIFELKEEGATIIFSSHRMEHVEELCD 198 (300)
T ss_pred hhH--HHHHHHHHHHHhcCCEEEEecchHHHHHHHhh
Confidence 544 555554432 2222222 34555555554
No 461
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=5.4e-08 Score=77.42 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
..|.++|++++|||+|+-.|.......+ -+++........+ +...+++||.||+.. .+..+..++..
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~T-----vtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~~ 105 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGT-----VTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLKH 105 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCe-----eeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence 6999999999999999876664332211 1122222333344 455689999999753 34444444432
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC----ccccCeEEEEEeCCCCCCCC-hhcHHHHhh
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELEDN-DETLEDYLG 162 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~iil~nk~D~~~~~-~~~l~~~l~ 162 (285)
. ..+-+++||+|.. -+...-+...+++-..+- ..-..|++|..||.|..... .+.+++.++
T Consensus 106 ~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LE 171 (238)
T KOG0090|consen 106 N-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLE 171 (238)
T ss_pred c-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHH
Confidence 2 2567999999975 455555555554443331 12235899999999988652 233444444
No 462
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=6e-09 Score=89.11 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=39.1
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 18 ~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (274)
T PRK13647 18 TKALKGLSLSIPEG--SKTALLGPNGAGKSTLLLHLNGIYLPQRG 60 (274)
T ss_pred CeeeeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence 46899999999999 89999999999999999999998876554
No 463
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=4.2e-09 Score=88.17 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=39.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 17 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G 60 (237)
T PRK11614 17 KIQALHEVSLHINQG--EIVTLIGANGAGKTTLLGTLCGDPRATSG 60 (237)
T ss_pred CceeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 356889999999999 89999999999999999999998876554
No 464
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.79 E-value=1.3e-08 Score=96.13 Aligned_cols=148 Identities=20% Similarity=0.204 Sum_probs=82.9
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC-
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD- 81 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~- 81 (285)
.++++++|+.+++| .+++++|+||+|||||++.|+|...+..|.... +.... ......+ ...-..+...|.+++
T Consensus 348 ~~~l~~i~~~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~-~~~~~~~-~~~i~~v~q~~~lf~~ 423 (585)
T TIGR01192 348 SQGVFDVSFEAKAG--QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDIN-TVTRESL-RKSIATVFQDAGLFNR 423 (585)
T ss_pred CccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhh-hCCHHHH-HhheEEEccCCccCcc
Confidence 45789999999999 899999999999999999999988766553211 10000 0000000 000011222222221
Q ss_pred ----------CCCCcHHHHHHHHH-----HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214 82 ----------FSAGSEFVGKEIVK-----CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--- 143 (285)
Q Consensus 82 ----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--- 143 (285)
+..+++++...... .+.....+.|.. +-+.+..+|+++++++...+..+.++ +++++
T Consensus 424 ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~--~~~~~~~LSgGq~qrl~lARall~~p---~ililDEp 498 (585)
T TIGR01192 424 SIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTL--VGERGNRLSGGERQRLAIARAILKNA---PILVLDEA 498 (585)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccch--hcCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEECC
Confidence 11122222221111 111111122221 22334579999999999999988765 77777
Q ss_pred EeCCCCCCCChhcHHHHhh
Q 023214 144 FTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~ 162 (285)
++.+|.... ..+.+.+.
T Consensus 499 ts~LD~~~~--~~i~~~l~ 515 (585)
T TIGR01192 499 TSALDVETE--ARVKNAID 515 (585)
T ss_pred ccCCCHHHH--HHHHHHHH
Confidence 888886655 55555554
No 465
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.79 E-value=1.5e-08 Score=79.09 Aligned_cols=55 Identities=27% Similarity=0.424 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (285)
.+++++|.+|+|||||+|+|++......+.. .++|....... .+..++|+||||+
T Consensus 101 ~~~~~~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~~~----~~~~~~liDtPG~ 155 (155)
T cd01849 101 ITVGVIGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQEVK----LDNKIKLLDTPGI 155 (155)
T ss_pred cEEEEEccCCCCHHHHHHHHHccccccccCC-CCcccceEEEE----ecCCEEEEECCCC
Confidence 7999999999999999999999875443332 34454443322 2456899999996
No 466
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=3e-08 Score=85.18 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=39.5
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+..+++++|+.+..| ..++|+|+||+|||||+++|+|...+..|
T Consensus 18 ~~~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G 61 (283)
T PRK13636 18 GTHALKGININIKKG--EVTAILGGNGAGKSTLFQNLNGILKPSSG 61 (283)
T ss_pred CCeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCcc
Confidence 356899999999999 89999999999999999999998876554
No 467
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.79 E-value=9.2e-09 Score=95.48 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=39.7
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 16 ~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 60 (501)
T PRK11288 16 GVKALDDISFDCRAG--QVHALMGENGAGKSTLLKILSGNYQPDAGS 60 (501)
T ss_pred CEEEEeeeeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 346899999999999 899999999999999999999988665543
No 468
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.79 E-value=8.4e-09 Score=80.72 Aligned_cols=41 Identities=32% Similarity=0.319 Sum_probs=36.6
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~ 46 (285)
..++.++++.+.+| ..++|+|+||+|||||+++|.|...+.
T Consensus 12 ~~~l~~~~~~i~~g--~~~~i~G~nGsGKStll~~l~g~~~~~ 52 (157)
T cd00267 12 RTALDNVSLTLKAG--EIVALVGPNGSGKSTLLRAIAGLLKPT 52 (157)
T ss_pred eeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35788999999999 899999999999999999999987543
No 469
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.79 E-value=2e-08 Score=82.06 Aligned_cols=42 Identities=31% Similarity=0.376 Sum_probs=38.6
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.+++++|+.+++| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 19 ~il~~~s~~i~~G--~~~~i~G~nG~GKSTLl~~i~G~~~~~~G 60 (204)
T cd03250 19 FTLKDINLEVPKG--ELVAIVGPVGSGKSSLLSALLGELEKLSG 60 (204)
T ss_pred ceeeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCcCCCCCC
Confidence 6899999999999 89999999999999999999998776554
No 470
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=2e-07 Score=69.11 Aligned_cols=125 Identities=15% Similarity=0.176 Sum_probs=80.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
+.+|+.+|-.++||||++-.|.-... ....+|+......+.+ .+..++++|..|.. .++..+.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGGqd-----------~iRplWr 79 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGGQD-----------KIRPLWR 79 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccCch-----------hhhHHHH
Confidence 48999999999999999977653221 1123345555555666 67889999998854 3445666
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccc--CeEEEEEeCCCCCCCC-hhcHHHHhh
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF--DYMIVVFTGGDELEDN-DETLEDYLG 162 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~iil~nk~D~~~~~-~~~l~~~l~ 162 (285)
.+|++..+++||+|..++ ..-+..+-++ ...++.+-. .+++|+.||.|....- ...+.++++
T Consensus 80 hYy~gtqglIFV~Dsa~~-dr~eeAr~EL-h~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le 144 (180)
T KOG0071|consen 80 HYYTGTQGLIFVVDSADR-DRIEEARNEL-HRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE 144 (180)
T ss_pred hhccCCceEEEEEeccch-hhHHHHHHHH-HHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc
Confidence 779999999999998644 3223233222 222233222 2677779999987441 244555554
No 471
>PRK13768 GTPase; Provisional
Probab=98.78 E-value=3.4e-08 Score=83.37 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=50.1
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCC
Q 023214 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (285)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D 148 (285)
..+.++||||..++... ...+..+.+.+.... .+++++|+|+....+..+.....++..........|+++++||.|
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D 173 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD 173 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence 36899999998764322 233445555554332 789999999965566666444333321110011239999999999
Q ss_pred CCCC
Q 023214 149 ELED 152 (285)
Q Consensus 149 ~~~~ 152 (285)
....
T Consensus 174 ~~~~ 177 (253)
T PRK13768 174 LLSE 177 (253)
T ss_pred hcCc
Confidence 9876
No 472
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.78 E-value=1.1e-08 Score=96.38 Aligned_cols=151 Identities=11% Similarity=-0.010 Sum_probs=83.3
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVVN 72 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~~ 72 (285)
.++++++|+.+++| .+++|+|+||+|||||++.|+|...|..|.... +.. ....+..+.. .-..-+
T Consensus 328 ~~~l~~i~~~i~~G--~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~-~lf~~t 404 (569)
T PRK10789 328 HPALENVNFTLKPG--QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP-FLFSDT 404 (569)
T ss_pred CccccCeeEEECCC--CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC-eecccc
Confidence 46899999999999 899999999999999999999998776653211 000 0011111000 000001
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHH-h-hccCCccEEEEEEe-CCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeC
Q 023214 73 VIDTPGLFDFSAGSEFVGKEIVKCI-G-MAKDGIHAVLVVFS-VRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTG 146 (285)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~v~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk 146 (285)
+-|..-+..+..+++.+...+..+- . ....-++++-..++ .+..+|+++++++...+..+.++ +++++ ++.
T Consensus 405 i~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~---~illlDEpts~ 481 (569)
T PRK10789 405 VANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA---EILILDDALSA 481 (569)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC---CEEEEECcccc
Confidence 1111111111122222222111100 0 00011233322332 34579999999999999988765 77777 788
Q ss_pred CCCCCCChhcHHHHhh
Q 023214 147 GDELEDNDETLEDYLG 162 (285)
Q Consensus 147 ~D~~~~~~~~l~~~l~ 162 (285)
+|.... ..+.+.+.
T Consensus 482 LD~~~~--~~i~~~l~ 495 (569)
T PRK10789 482 VDGRTE--HQILHNLR 495 (569)
T ss_pred CCHHHH--HHHHHHHH
Confidence 886554 55555554
No 473
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.78 E-value=4.1e-08 Score=84.47 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=47.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 88 (285)
.+++++|.+|+|||||+|+|+|......+. ..++|...+... .+..+.|+||||+..+......
T Consensus 122 ~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 122 IRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIK----LGKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEE----eCCcEEEEECCCcCCCCCCcHH
Confidence 799999999999999999999987644433 345666654322 2456899999999877654443
No 474
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.78 E-value=2.7e-08 Score=87.89 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=39.0
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+..+++++++++..| ..++|+|+||+|||||+++|+|...+..|
T Consensus 16 ~~~~l~~vs~~i~~G--e~~~l~GpsGsGKSTLLr~iaGl~~p~~G 59 (353)
T TIGR03265 16 AFTALKDISLSVKKG--EFVCLLGPSGCGKTTLLRIIAGLERQTAG 59 (353)
T ss_pred CeEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCCCce
Confidence 345788999999999 89999999999999999999999876655
No 475
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=3.3e-08 Score=85.14 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=39.2
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 20 ~~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G 62 (287)
T PRK13637 20 KKALDNVNIEIEDG--EFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62 (287)
T ss_pred cceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCcc
Confidence 36899999999999 89999999999999999999999876655
No 476
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=2.5e-08 Score=89.30 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=80.9
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEE---eeCCceEEEEeCCCCC
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTV---LKDGQVVNVIDTPGLF 80 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~---~~~~~~~~liDtpG~~ 80 (285)
..++++||.+..| ..++|+|+||+|||||+++|+|...+.+|.... +..... ..... .....-.++.+.|+++
T Consensus 42 ~~L~~isl~i~~G--ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~-~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 42 LGVKDASLAIEEG--EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAK-ISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EEEEeEEEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCc-CCHHHHHHHHhCCEEEEECCCcCC
Confidence 3678999999999 899999999999999999999998766553211 100000 00000 0000122344455544
Q ss_pred CCCCCcH--------------HHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214 81 DFSAGSE--------------FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--- 143 (285)
Q Consensus 81 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--- 143 (285)
......+ .....+...+... +.+. +.-..-..+|+++++++.+++.+...+ +++++
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~--gL~~--~~~~~~~~LSgGq~QRv~LArAL~~~P---~iLLLDEP 191 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQV--GLEN--YAHSYPDELSGGMRQRVGLARALAINP---DILLMDEA 191 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCCh--hhhcCcccCCHHHHHHHHHHHHHhcCC---CEEEEECC
Confidence 2111001 0111111122111 1111 111112479999999999998887765 67777
Q ss_pred EeCCCCCCCChhcHHHHhh
Q 023214 144 FTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~ 162 (285)
++.+|.... ..+.+.+.
T Consensus 192 ts~LD~~~r--~~l~~~L~ 208 (400)
T PRK10070 192 FSALDPLIR--TEMQDELV 208 (400)
T ss_pred CccCCHHHH--HHHHHHHH
Confidence 788886655 55555554
No 477
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.78 E-value=1.4e-08 Score=94.46 Aligned_cols=44 Identities=20% Similarity=0.156 Sum_probs=39.5
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+..| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 17 ~~~il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p~~G 60 (510)
T PRK09700 17 PVHALKSVNLTVYPG--EIHALLGENGAGKSTLMKVLSGIHEPTKG 60 (510)
T ss_pred CeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCcCCCcc
Confidence 456899999999999 89999999999999999999999876554
No 478
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.78 E-value=1.1e-08 Score=87.14 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=39.1
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 24 ~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 66 (265)
T TIGR02769 24 APVLTNVSLSIEEG--ETVGLLGRSGCGKSTLARLLLGLEKPAQG 66 (265)
T ss_pred eEEeeCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 56899999999999 89999999999999999999998876554
No 479
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.78 E-value=2.7e-08 Score=87.94 Aligned_cols=45 Identities=29% Similarity=0.382 Sum_probs=39.7
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+..+++++++++..| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 14 ~~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~ 58 (353)
T PRK10851 14 RTQVLNDISLDIPSG--QMVALLGPSGSGKTTLLRIIAGLEHQTSGH 58 (353)
T ss_pred CeEEEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 346789999999999 899999999999999999999988766553
No 480
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=3.5e-08 Score=84.92 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=39.2
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+++..| ..++|+|+||+|||||+++|+|...+..|
T Consensus 20 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G 62 (286)
T PRK13646 20 HQAIHDVNTEFEQG--KYYAIVGQTGSGKSTLIQNINALLKPTTG 62 (286)
T ss_pred cCceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 36999999999999 89999999999999999999998876655
No 481
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.78 E-value=8.4e-08 Score=76.26 Aligned_cols=36 Identities=31% Similarity=0.314 Sum_probs=33.5
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g 41 (285)
.++++++|+++.+| .+++|+|+||+|||||+++|++
T Consensus 8 ~~~l~~isl~i~~G--~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 8 VHNLQNLDVSIPLN--VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeeecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhh
Confidence 56799999999999 8999999999999999999974
No 482
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.78 E-value=1.2e-08 Score=84.47 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=39.0
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+++| ..++|+|+||+|||||+++|+|...+..|
T Consensus 17 ~~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 59 (221)
T cd03244 17 PPVLKNISFSIKPG--EKVGIVGRTGSGKSSLLLALFRLVELSSG 59 (221)
T ss_pred cccccceEEEECCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence 36899999999999 89999999999999999999998876554
No 483
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.78 E-value=5.1e-08 Score=80.99 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=36.8
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...
T Consensus 20 ~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 20 ARILNDVSLHVESG--QVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cccccCceEEEcCC--eEEEEECCCCCCHHHHHHHHhCccC
Confidence 57899999999999 8999999999999999999999876
No 484
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.78 E-value=1.1e-08 Score=98.64 Aligned_cols=148 Identities=17% Similarity=0.122 Sum_probs=84.2
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVVN 72 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~~ 72 (285)
.++++++|+.+++| .+|+++|+||+|||||++.|+|...+..|.... +.. ....+.++.. .--.-+
T Consensus 478 ~~vL~~i~l~i~~G--~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~-~lf~~T 554 (694)
T TIGR03375 478 TPALDNVSLTIRPG--EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDP-RLFYGT 554 (694)
T ss_pred ccceeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCCh-hhhhhh
Confidence 46889999999999 899999999999999999999998776653211 100 0011111100 000011
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHH-----HhhccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---
Q 023214 73 VIDTPGLFDFSAGSEFVGKEIVKC-----IGMAKDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV--- 143 (285)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil--- 143 (285)
+-|.-.+.++..+++++.+-+..+ +. .+ ++++--.+ +.+..+|+++++++..++..+.++ +++++
T Consensus 555 I~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~-~l--p~gl~T~i~e~G~~LSgGQrQRlalARall~~p---~iliLDE~ 628 (694)
T TIGR03375 555 LRDNIALGAPYADDEEILRAAELAGVTEFVR-RH--PDGLDMQIGERGRSLSGGQRQAVALARALLRDP---PILLLDEP 628 (694)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHcChHHHHH-hC--cccccceecCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCC
Confidence 111111222222233322222211 11 11 22222222 345679999999999999998765 77777
Q ss_pred EeCCCCCCCChhcHHHHhh
Q 023214 144 FTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~ 162 (285)
++.+|.... ..+.+.+.
T Consensus 629 Ts~LD~~te--~~i~~~l~ 645 (694)
T TIGR03375 629 TSAMDNRSE--ERFKDRLK 645 (694)
T ss_pred CCCCCHHHH--HHHHHHHH
Confidence 777775544 45555554
No 485
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.78 E-value=1.3e-08 Score=82.26 Aligned_cols=56 Identities=30% Similarity=0.345 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccc-------cccCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFK-------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (285)
.+++++|.+|+|||||+|+|++..... ......++|........ +..+.|+||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 689999999999999999999865422 11223355555433332 235899999996
No 486
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=1.6e-08 Score=86.63 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=39.0
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
..+++++++.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 17 ~~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G 59 (277)
T PRK13652 17 KEALNNINFIAPRN--SRIAVIGPNGAGKSTLFRHFNGILKPTSG 59 (277)
T ss_pred CceeeEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 35899999999999 89999999999999999999998876655
No 487
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=3.8e-08 Score=84.88 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=39.2
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+..| ..++|+|+||+|||||+++|+|...+..|
T Consensus 20 ~~~L~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 62 (290)
T PRK13634 20 RRALYDVNVSIPSG--SYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62 (290)
T ss_pred ccceeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 46899999999999 89999999999999999999998876554
No 488
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=4.1e-08 Score=84.05 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=38.9
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 15 ~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 57 (275)
T PRK13639 15 TEALKGINFKAEKG--EMVALLGPNGAGKSTLFLHFNGILKPTSG 57 (275)
T ss_pred CeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 46899999999999 89999999999999999999998766554
No 489
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=2.2e-08 Score=84.68 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=37.5
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 45 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~ 45 (285)
+.++++++++.+.+| ..++|+|+||+|||||+++|+|...+
T Consensus 16 ~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 16 SNHVIKGVDLKIPQN--GVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred CeeeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCc
Confidence 456899999999999 89999999999999999999998754
No 490
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=5.3e-08 Score=89.01 Aligned_cols=116 Identities=24% Similarity=0.319 Sum_probs=80.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccC---------------CCCcceeEEEEEEEeeC----CceEEEEeCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS---------------SSGVTSTCEMQRTVLKD----GQVVNVIDTPGL 79 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~---------------~~~~t~~~~~~~~~~~~----~~~~~liDtpG~ 79 (285)
..+|+++|+=++|||+|+.+|.++..+..... ..+++++.........+ ..-++++||||+
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence 47899999999999999999998887543111 12455554444433322 244899999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
.++. .+.. ..+.-+|++++|+|+.+++.-.....++.+.+ ... ++++++||+|.+
T Consensus 208 VnF~-------DE~t----a~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~~--~i~vviNKiDRL 262 (971)
T KOG0468|consen 208 VNFS-------DETT----ASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---NRL--PIVVVINKVDRL 262 (971)
T ss_pred ccch-------HHHH----HHhhhcceEEEEEEcccCceeeHHHHHHHHHh---ccC--cEEEEEehhHHH
Confidence 9863 2222 23455699999999977877766655554443 233 899999999976
No 491
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=7e-08 Score=80.41 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccc---------cccc-----CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAF---------KSRA-----SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~---------~~~~-----~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (285)
.+|+.||+...|||||-.+|+....- .... -..|+|+......++. ..+.+..+|+||+.|.
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaDY--- 88 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADY--- 88 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHHH---
Confidence 69999999999999999988754321 0000 1236666655555555 6788999999997642
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhhh
Q 023214 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~ 163 (285)
+.+.|..+ ...|+.++|+++.+..-++.+..+-+.+.. |-+ .+++++||+|..++ ..+-+.+..
T Consensus 89 ---vKNMItgA-----aqmDgAILVVsA~dGpmPqTrEHiLlarqv-Gvp---~ivvflnK~Dmvdd--~ellelVem 152 (394)
T COG0050 89 ---VKNMITGA-----AQMDGAILVVAATDGPMPQTREHILLARQV-GVP---YIVVFLNKVDMVDD--EELLELVEM 152 (394)
T ss_pred ---HHHHhhhH-----HhcCccEEEEEcCCCCCCcchhhhhhhhhc-CCc---EEEEEEecccccCc--HHHHHHHHH
Confidence 22222222 245788999999777777777776666554 654 78888999999987 666666653
No 492
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.77 E-value=1.4e-08 Score=85.07 Aligned_cols=44 Identities=32% Similarity=0.349 Sum_probs=39.1
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 12 ~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G 55 (237)
T TIGR00968 12 SFQALDDVNLEVPTG--SLVALLGPSGSGKSTLLRIIAGLEQPDSG 55 (237)
T ss_pred CeeeeeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 456899999999999 89999999999999999999998765544
No 493
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.76 E-value=2.3e-08 Score=93.82 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=83.5
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCC--
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLF-- 80 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~-- 80 (285)
.++++++|+.+++| .+++++|+||+|||||++.|+|...+..|.... +..... .....+ ...-..+.+.|.++
T Consensus 331 ~~~l~~~~~~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~-~~~~~~-~~~i~~v~q~~~lf~~ 406 (544)
T TIGR01842 331 KPTLRGISFRLQAG--EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ-WDRETF-GKHIGYLPQDVELFPG 406 (544)
T ss_pred ccccccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhh-CCHHHH-hhheEEecCCcccccc
Confidence 46899999999999 899999999999999999999998766553211 100000 000000 00011122222222
Q ss_pred ---------CCCCCcHHHHHHHH-----HHHhhccC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214 81 ---------DFSAGSEFVGKEIV-----KCIGMAKD-GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV-- 143 (285)
Q Consensus 81 ---------~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil-- 143 (285)
....+++.+...+. ..+ ..+| +.|.. +-..+..+|+++++++...+..+.++ +++++
T Consensus 407 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~gl~t~--~~~~g~~LSgGq~qrl~lARall~~~---~ililDE 480 (544)
T TIGR01842 407 TVAENIARFGENADPEKIIEAAKLAGVHELI-LRLPDGYDTV--IGPGGATLSGGQRQRIALARALYGDP---KLVVLDE 480 (544)
T ss_pred cHHHHHhccCCCCCHHHHHHHHHHhChHHHH-HhCccccccc--cCCCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeC
Confidence 11112222222111 111 1122 22321 22234579999999999999998766 77777
Q ss_pred -EeCCCCCCCChhcHHHHhh
Q 023214 144 -FTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 144 -~nk~D~~~~~~~~l~~~l~ 162 (285)
++..|.... ..+.+.+.
T Consensus 481 pts~LD~~~~--~~i~~~l~ 498 (544)
T TIGR01842 481 PNSNLDEEGE--QALANAIK 498 (544)
T ss_pred CccccCHHHH--HHHHHHHH
Confidence 788886654 55555554
No 494
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.76 E-value=2.8e-08 Score=95.98 Aligned_cols=140 Identities=15% Similarity=0.047 Sum_probs=77.9
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVVN 72 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~~ 72 (285)
.++++|+|+++++| .+++|+|+||+|||||++.|+|...+..|.... +.. ..+.+.++.. .=-.-+
T Consensus 494 ~~vL~~isl~i~~G--e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~-~lF~gT 570 (711)
T TIGR00958 494 VPVLKGLTFTLHPG--EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEP-VLFSGS 570 (711)
T ss_pred CccccCceEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCc-cccccC
Confidence 46899999999999 899999999999999999999988766553211 000 0111111110 000001
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHH----HhhccC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214 73 VIDTPGLFDFSAGSEFVGKEIVKC----IGMAKD-GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F 144 (285)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~ 144 (285)
+-|-.-+..+..+++.+.+-+..+ +...+| +.|.. +-+.+..+|+++++++...+..+.++ +++|+ +
T Consensus 571 IreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~--ige~G~~LSGGQkQRlalARALl~~p---~ILILDEpT 645 (711)
T TIGR00958 571 VRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTE--VGEKGSQLSGGQKQRIAIARALVRKP---RVLILDEAT 645 (711)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCc--ccCCCCcCCHHHHHHHHHHHHHhcCC---CEEEEEccc
Confidence 111111111111222222211111 001111 22321 22334579999999999999998765 78877 7
Q ss_pred eCCCCCC
Q 023214 145 TGGDELE 151 (285)
Q Consensus 145 nk~D~~~ 151 (285)
+..|...
T Consensus 646 SaLD~~t 652 (711)
T TIGR00958 646 SALDAEC 652 (711)
T ss_pred cccCHHH
Confidence 7777543
No 495
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.76 E-value=3e-08 Score=85.24 Aligned_cols=60 Identities=33% Similarity=0.396 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCC----C--CcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS----S--GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~----~--~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (285)
.+++++|++|+|||||+|+|+|...+.++... . ++|.....+.. .....++||||+.++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~----~~~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPL----PGGGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEc----CCCCEEEECCCCCccC
Confidence 68999999999999999999998876554322 1 23443333322 1234799999997643
No 496
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.76 E-value=7.3e-08 Score=78.69 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=40.6
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+|+++.++++.+++.| .+-+|+|+||||||||++.++|..++.++
T Consensus 42 ~gk~iL~~isW~V~~g--e~W~I~G~NGsGKTTLL~ll~~~~~pssg 86 (257)
T COG1119 42 NGKKILGDLSWQVNPG--EHWAIVGPNGAGKTTLLSLLTGEHPPSSG 86 (257)
T ss_pred CCEeeccccceeecCC--CcEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 4678899999999999 89999999999999999999999976543
No 497
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=3.6e-08 Score=84.94 Aligned_cols=42 Identities=26% Similarity=0.173 Sum_probs=38.8
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.+++++|+++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 21 ~~l~~vsl~i~~G--e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G 62 (287)
T PRK13641 21 KGLDNISFELEEG--SFVALVGHTGSGKSTLMQHFNALLKPSSG 62 (287)
T ss_pred cceeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 5899999999999 89999999999999999999999877655
No 498
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.76 E-value=5.2e-08 Score=80.64 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=39.0
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
..+++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 18 ~~il~~vs~~i~~G--~~~~I~G~nGsGKStLl~~l~G~~~~~~G 60 (220)
T TIGR02982 18 KQVLFDINLEINPG--EIVILTGPSGSGKTTLLTLIGGLRSVQEG 60 (220)
T ss_pred eeEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 56899999999999 89999999999999999999998766554
No 499
>PRK00098 GTPase RsgA; Reviewed
Probab=98.76 E-value=3.5e-08 Score=85.32 Aligned_cols=59 Identities=31% Similarity=0.379 Sum_probs=41.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (285)
..++++|++|+|||||+|+|+|...+.++.... .+|.....+.. +....|+||||+..+
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~----~~~~~~~DtpG~~~~ 229 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL----PGGGLLIDTPGFSSF 229 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc----CCCcEEEECCCcCcc
Confidence 689999999999999999999987765543321 23333333222 223589999999854
No 500
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.76 E-value=3.9e-08 Score=83.85 Aligned_cols=43 Identities=28% Similarity=0.413 Sum_probs=39.1
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 25 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG 67 (268)
T PRK10419 25 QTVLNNVSLSLKSG--ETVALLGRSGCGKSTLARLLVGLESPSQG 67 (268)
T ss_pred eeeEeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 57899999999999 89999999999999999999998766554
Done!