Query 023214
Match_columns 285
No_of_seqs 248 out of 2844
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 03:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxw_A GTPase IMAP family memb 99.9 7.9E-24 2.7E-28 177.2 18.7 133 17-151 19-153 (247)
2 3lxx_A GTPase IMAP family memb 99.9 5.1E-24 1.7E-28 177.5 17.0 142 17-162 27-168 (239)
3 2xtp_A GTPase IMAP family memb 99.9 1.4E-21 4.7E-26 164.7 21.8 133 18-152 21-154 (260)
4 3def_A T7I23.11 protein; chlor 99.8 2.7E-18 9.1E-23 144.8 16.2 142 18-163 35-177 (262)
5 1h65_A Chloroplast outer envel 99.8 4.2E-18 1.4E-22 144.2 15.7 140 19-162 39-179 (270)
6 1wf3_A GTP-binding protein; GT 99.7 7.3E-17 2.5E-21 138.5 17.1 133 20-162 8-141 (301)
7 4dhe_A Probable GTP-binding pr 99.7 7.8E-17 2.7E-21 132.1 14.4 131 17-152 27-159 (223)
8 3iev_A GTP-binding protein ERA 99.7 6.8E-17 2.3E-21 139.2 14.1 124 19-150 10-135 (308)
9 1svi_A GTP-binding protein YSX 99.7 9.2E-16 3.1E-20 122.9 16.8 126 18-152 22-149 (195)
10 3t5d_A Septin-7; GTP-binding p 99.7 5.4E-16 1.8E-20 131.5 15.5 131 16-152 5-159 (274)
11 2gj8_A MNME, tRNA modification 99.7 4.1E-16 1.4E-20 122.9 13.1 124 20-151 5-129 (172)
12 2dyk_A GTP-binding protein; GT 99.7 1.7E-15 5.9E-20 117.3 13.3 122 20-152 2-123 (161)
13 3pqc_A Probable GTP-binding pr 99.7 8.4E-15 2.9E-19 117.0 17.6 125 18-152 22-148 (195)
14 2lkc_A Translation initiation 99.6 3.5E-15 1.2E-19 117.6 14.0 114 20-152 9-122 (178)
15 2qag_B Septin-6, protein NEDD5 99.6 9.6E-16 3.3E-20 136.1 11.7 138 7-152 30-191 (427)
16 3t34_A Dynamin-related protein 99.6 4.2E-15 1.4E-19 130.9 14.4 130 20-152 35-218 (360)
17 1ega_A Protein (GTP-binding pr 99.6 1.9E-15 6.4E-20 129.8 11.1 121 20-151 9-130 (301)
18 1mky_A Probable GTP-binding pr 99.6 3.5E-15 1.2E-19 134.7 13.2 122 20-150 2-123 (439)
19 3tw8_B RAS-related protein RAB 99.6 7.4E-15 2.5E-19 115.9 13.4 117 18-151 8-127 (181)
20 2qu8_A Putative nucleolar GTP- 99.6 9.7E-15 3.3E-19 120.3 14.1 126 19-152 29-157 (228)
21 3iby_A Ferrous iron transport 99.6 8.2E-15 2.8E-19 122.9 13.4 121 20-151 2-124 (256)
22 2efe_B Small GTP-binding prote 99.6 9.1E-15 3.1E-19 115.5 11.9 119 19-152 12-132 (181)
23 1z0j_A RAB-22, RAS-related pro 99.6 4.6E-15 1.6E-19 115.8 9.8 117 20-151 7-125 (170)
24 1ek0_A Protein (GTP-binding pr 99.6 3.2E-15 1.1E-19 116.7 8.5 118 20-152 4-123 (170)
25 4dcu_A GTP-binding protein ENG 99.6 8E-16 2.8E-20 139.6 5.8 123 20-152 24-146 (456)
26 2gf9_A RAS-related protein RAB 99.6 1.4E-14 4.7E-19 115.6 12.2 118 19-151 22-141 (189)
27 1m2o_B GTP-binding protein SAR 99.6 3.2E-14 1.1E-18 113.8 14.3 124 7-151 14-138 (190)
28 2bcg_Y Protein YP2, GTP-bindin 99.6 1.6E-14 5.4E-19 116.9 12.6 118 19-152 8-128 (206)
29 3tkl_A RAS-related protein RAB 99.6 2.8E-14 9.7E-19 114.2 13.7 119 18-152 15-136 (196)
30 1ksh_A ARF-like protein 2; sma 99.6 5.6E-14 1.9E-18 111.6 15.1 117 18-152 17-134 (186)
31 1z08_A RAS-related protein RAB 99.6 9.5E-15 3.2E-19 114.1 10.4 117 19-151 6-125 (170)
32 3i8s_A Ferrous iron transport 99.6 1.5E-14 5.2E-19 122.5 12.4 121 20-151 4-126 (274)
33 1g16_A RAS-related protein SEC 99.6 8.8E-15 3E-19 114.2 9.6 117 19-151 3-122 (170)
34 1upt_A ARL1, ADP-ribosylation 99.6 7.3E-14 2.5E-18 109.1 14.7 115 20-152 8-123 (171)
35 1jwy_B Dynamin A GTPase domain 99.6 5.6E-14 1.9E-18 121.3 15.3 129 19-152 24-213 (315)
36 1r2q_A RAS-related protein RAB 99.6 7.8E-15 2.7E-19 114.4 9.0 118 19-151 6-125 (170)
37 3k53_A Ferrous iron transport 99.6 2.9E-14 9.9E-19 120.6 13.1 119 20-150 4-122 (271)
38 2hjg_A GTP-binding protein ENG 99.6 3.6E-15 1.2E-19 134.5 7.8 122 20-151 4-125 (436)
39 4bas_A ADP-ribosylation factor 99.6 4.9E-14 1.7E-18 113.1 13.7 121 17-152 15-142 (199)
40 1f6b_A SAR1; gtpases, N-termin 99.6 1.6E-14 5.3E-19 116.4 10.7 125 6-151 15-140 (198)
41 2h57_A ADP-ribosylation factor 99.6 3.8E-14 1.3E-18 113.1 12.8 120 18-152 20-141 (190)
42 2hjg_A GTP-binding protein ENG 99.6 5.6E-15 1.9E-19 133.3 8.8 127 19-152 175-301 (436)
43 3a1s_A Iron(II) transport prot 99.6 8.6E-14 2.9E-18 116.8 15.5 118 20-150 6-123 (258)
44 2oil_A CATX-8, RAS-related pro 99.6 1E-14 3.5E-19 116.7 9.5 118 19-151 25-144 (193)
45 2qag_C Septin-7; cell cycle, c 99.6 2.3E-14 8E-19 127.7 12.6 128 19-152 31-182 (418)
46 1zbd_A Rabphilin-3A; G protein 99.6 2.2E-14 7.4E-19 115.7 11.3 118 20-152 9-128 (203)
47 2fg5_A RAB-22B, RAS-related pr 99.6 1.4E-14 4.6E-19 116.1 9.9 118 19-151 23-142 (192)
48 2g6b_A RAS-related protein RAB 99.6 4.3E-14 1.5E-18 111.5 12.7 118 20-152 11-131 (180)
49 3cph_A RAS-related protein SEC 99.6 3.6E-14 1.2E-18 115.2 12.3 116 19-150 20-138 (213)
50 2wji_A Ferrous iron transport 99.6 6.9E-14 2.4E-18 109.2 13.5 118 20-150 4-121 (165)
51 1z2a_A RAS-related protein RAB 99.6 2E-14 6.7E-19 112.0 10.2 117 19-151 5-123 (168)
52 2j69_A Bacterial dynamin-like 99.6 3.1E-13 1.1E-17 128.2 20.2 121 20-152 70-245 (695)
53 3gee_A MNME, tRNA modification 99.5 2.2E-14 7.5E-19 130.1 11.8 125 20-152 234-358 (476)
54 3t5g_A GTP-binding protein RHE 99.5 8.6E-14 2.9E-18 110.0 13.8 117 19-152 6-126 (181)
55 4dsu_A GTPase KRAS, isoform 2B 99.5 3.6E-14 1.2E-18 112.8 11.6 118 19-152 4-124 (189)
56 1ky3_A GTP-binding protein YPT 99.5 1.9E-14 6.6E-19 113.5 10.0 121 18-151 7-132 (182)
57 1z06_A RAS-related protein RAB 99.5 2.4E-14 8.4E-19 114.2 10.5 120 18-151 19-141 (189)
58 2bme_A RAB4A, RAS-related prot 99.5 5.5E-14 1.9E-18 111.5 12.4 117 19-151 10-129 (186)
59 1z0f_A RAB14, member RAS oncog 99.5 1.3E-14 4.3E-19 114.3 8.5 118 19-151 15-134 (179)
60 3clv_A RAB5 protein, putative; 99.5 1.3E-13 4.6E-18 110.7 14.5 111 20-148 8-158 (208)
61 2x77_A ADP-ribosylation factor 99.5 1.4E-13 4.9E-18 109.6 14.4 116 19-152 22-138 (189)
62 2nzj_A GTP-binding protein REM 99.5 5.1E-14 1.7E-18 110.5 11.6 120 19-152 4-126 (175)
63 1moz_A ARL1, ADP-ribosylation 99.5 7.2E-14 2.5E-18 110.5 12.5 115 19-152 18-134 (183)
64 2q3h_A RAS homolog gene family 99.5 5.4E-14 1.8E-18 113.2 11.8 116 19-152 20-139 (201)
65 2fv8_A H6, RHO-related GTP-bin 99.5 4.2E-14 1.4E-18 114.6 11.1 126 7-152 15-144 (207)
66 1r8s_A ADP-ribosylation factor 99.5 1E-13 3.6E-18 107.6 12.9 114 20-152 1-116 (164)
67 2b6h_A ADP-ribosylation factor 99.5 1.7E-13 5.7E-18 109.8 14.4 117 18-152 28-145 (192)
68 2a5j_A RAS-related protein RAB 99.5 3.1E-14 1E-18 113.8 10.1 117 19-151 21-140 (191)
69 1zj6_A ADP-ribosylation factor 99.5 1.4E-13 4.7E-18 109.6 13.8 116 19-152 16-132 (187)
70 4dcu_A GTP-binding protein ENG 99.5 1.9E-14 6.4E-19 130.6 9.8 128 18-152 194-321 (456)
71 3bc1_A RAS-related protein RAB 99.5 3.4E-14 1.2E-18 113.3 10.0 118 19-151 11-141 (195)
72 3llu_A RAS-related GTP-binding 99.5 8.5E-14 2.9E-18 111.8 12.3 124 18-152 19-144 (196)
73 1vg8_A RAS-related protein RAB 99.5 3.1E-14 1.1E-18 115.0 9.8 120 19-151 8-131 (207)
74 3oes_A GTPase rhebl1; small GT 99.5 6.2E-14 2.1E-18 113.0 11.5 117 19-151 24-143 (201)
75 1wms_A RAB-9, RAB9, RAS-relate 99.5 3.8E-14 1.3E-18 111.5 9.8 119 19-151 7-130 (177)
76 2y8e_A RAB-protein 6, GH09086P 99.5 1.9E-14 6.4E-19 113.3 8.1 116 20-151 15-133 (179)
77 4djt_A GTP-binding nuclear pro 99.5 1.7E-14 5.9E-19 117.7 8.1 119 19-152 11-132 (218)
78 2h17_A ADP-ribosylation factor 99.5 9.5E-14 3.2E-18 110.0 12.2 116 19-152 21-137 (181)
79 1zd9_A ADP-ribosylation factor 99.5 1.4E-13 4.9E-18 109.7 13.1 117 19-152 22-139 (188)
80 3geh_A MNME, tRNA modification 99.5 1.4E-14 4.7E-19 131.0 8.0 121 20-152 225-345 (462)
81 3r7w_A Gtpase1, GTP-binding pr 99.5 4.4E-14 1.5E-18 121.6 10.9 125 20-151 4-129 (307)
82 1x3s_A RAS-related protein RAB 99.5 3.3E-14 1.1E-18 113.6 9.2 119 19-151 15-135 (195)
83 3dz8_A RAS-related protein RAB 99.5 1.5E-14 5E-19 115.7 7.1 119 19-151 23-142 (191)
84 3q72_A GTP-binding protein RAD 99.5 5.9E-14 2E-18 109.2 10.4 118 19-152 2-121 (166)
85 2fn4_A P23, RAS-related protei 99.5 4.4E-14 1.5E-18 111.4 9.8 118 17-151 7-128 (181)
86 2fu5_C RAS-related protein RAB 99.5 3.2E-14 1.1E-18 112.7 9.0 117 20-152 9-128 (183)
87 2p5s_A RAS and EF-hand domain 99.5 5.8E-14 2E-18 113.0 10.5 116 19-150 28-146 (199)
88 2erx_A GTP-binding protein DI- 99.5 6.5E-14 2.2E-18 109.4 10.3 118 19-151 3-123 (172)
89 2x2e_A Dynamin-1; nitration, h 99.5 2.6E-12 8.7E-17 112.7 21.4 129 20-152 32-212 (353)
90 2e87_A Hypothetical protein PH 99.5 4.2E-13 1.4E-17 117.9 16.4 126 19-152 167-295 (357)
91 2il1_A RAB12; G-protein, GDP, 99.5 1.8E-14 6E-19 115.4 7.0 117 19-151 26-145 (192)
92 3cpj_B GTP-binding protein YPT 99.5 6.6E-14 2.3E-18 114.8 10.4 117 19-151 13-132 (223)
93 3sop_A Neuronal-specific septi 99.5 1.2E-13 4.2E-18 116.5 12.2 136 20-163 3-164 (270)
94 1pui_A ENGB, probable GTP-bind 99.5 2.4E-13 8.2E-18 110.1 13.5 129 12-152 21-152 (210)
95 3reg_A RHO-like small GTPase; 99.5 1.5E-13 5.2E-18 110.0 12.0 114 19-151 23-141 (194)
96 2fh5_B SR-beta, signal recogni 99.5 2E-13 7E-18 110.9 12.8 118 19-152 7-130 (214)
97 1mh1_A RAC1; GTP-binding, GTPa 99.5 7.7E-14 2.6E-18 110.5 10.0 115 20-152 6-124 (186)
98 2yc2_C IFT27, small RAB-relate 99.5 5.8E-14 2E-18 113.3 9.2 120 20-151 21-146 (208)
99 2wjg_A FEOB, ferrous iron tran 99.5 3.8E-13 1.3E-17 106.9 13.9 118 20-150 8-125 (188)
100 3kkq_A RAS-related protein M-R 99.5 9.8E-14 3.3E-18 109.9 10.3 120 16-151 15-137 (183)
101 1fzq_A ADP-ribosylation factor 99.5 2.8E-13 9.7E-18 107.3 12.8 116 19-152 16-132 (181)
102 2o52_A RAS-related protein RAB 99.5 3.8E-14 1.3E-18 114.3 7.7 117 19-151 25-144 (200)
103 1u8z_A RAS-related protein RAL 99.5 7.5E-14 2.6E-18 108.5 9.1 117 19-151 4-123 (168)
104 2ew1_A RAS-related protein RAB 99.5 6.9E-14 2.4E-18 113.0 9.2 117 19-151 26-145 (201)
105 2qag_A Septin-2, protein NEDD5 99.5 1.7E-13 5.7E-18 120.5 12.4 130 17-152 35-189 (361)
106 1c1y_A RAS-related protein RAP 99.5 5.2E-14 1.8E-18 109.4 8.2 116 20-151 4-122 (167)
107 1m7b_A RND3/RHOE small GTP-bin 99.5 9.2E-14 3.2E-18 110.3 9.7 116 19-152 7-126 (184)
108 3b1v_A Ferrous iron uptake tra 99.5 1.8E-13 6.1E-18 115.6 11.9 117 20-150 4-120 (272)
109 3qq5_A Small GTP-binding prote 99.5 6.7E-14 2.3E-18 125.0 9.6 126 16-153 31-156 (423)
110 2j1l_A RHO-related GTP-binding 99.5 1.4E-13 4.8E-18 112.1 10.8 116 19-152 34-153 (214)
111 4gzl_A RAS-related C3 botulinu 99.5 1.4E-13 4.9E-18 111.3 10.7 117 18-152 29-149 (204)
112 1mky_A Probable GTP-binding pr 99.5 8.1E-14 2.8E-18 125.8 10.2 127 19-152 180-307 (439)
113 3vqt_A RF-3, peptide chain rel 99.5 2.3E-13 7.7E-18 125.6 13.3 118 19-153 31-168 (548)
114 2gco_A H9, RHO-related GTP-bin 99.5 2.3E-13 7.9E-18 109.7 11.8 116 19-152 25-144 (201)
115 3q85_A GTP-binding protein REM 99.5 6.7E-14 2.3E-18 109.2 8.4 118 20-151 3-123 (169)
116 3t1o_A Gliding protein MGLA; G 99.5 2.2E-13 7.6E-18 108.9 11.6 123 19-152 14-150 (198)
117 2aka_B Dynamin-1; fusion prote 99.5 3.5E-13 1.2E-17 115.3 13.6 130 19-152 26-207 (299)
118 1kao_A RAP2A; GTP-binding prot 99.5 3.8E-13 1.3E-17 104.3 12.6 116 20-151 4-122 (167)
119 2ce2_X GTPase HRAS; signaling 99.5 1.4E-13 4.9E-18 106.6 10.0 117 20-152 4-123 (166)
120 2ged_A SR-beta, signal recogni 99.5 1.6E-13 5.3E-18 109.7 10.3 120 19-152 48-171 (193)
121 2atx_A Small GTP binding prote 99.5 2.4E-13 8.3E-18 108.7 11.5 116 19-152 18-137 (194)
122 3con_A GTPase NRAS; structural 99.5 2.9E-13 9.8E-18 107.9 11.8 117 19-151 21-140 (190)
123 3tr5_A RF-3, peptide chain rel 99.5 6.7E-14 2.3E-18 128.5 9.2 117 19-152 13-149 (528)
124 2gf0_A GTP-binding protein DI- 99.5 1.1E-13 3.7E-18 111.1 9.3 118 19-152 8-129 (199)
125 4dkx_A RAS-related protein RAB 99.5 1.6E-13 5.4E-18 112.1 10.2 114 20-151 14-132 (216)
126 3gj0_A GTP-binding nuclear pro 99.5 5.2E-14 1.8E-18 115.2 7.3 120 18-152 14-134 (221)
127 2bov_A RAla, RAS-related prote 99.5 6.2E-13 2.1E-17 107.2 13.6 117 19-151 14-133 (206)
128 3q3j_B RHO-related GTP-binding 99.5 2.5E-13 8.4E-18 110.8 11.3 116 19-152 27-146 (214)
129 2hup_A RAS-related protein RAB 99.5 2.2E-13 7.6E-18 109.9 10.8 117 19-151 29-148 (201)
130 3l0i_B RAS-related protein RAB 99.5 1.3E-14 4.3E-19 116.9 2.9 118 19-152 33-153 (199)
131 2hxs_A RAB-26, RAS-related pro 99.5 1.9E-13 6.6E-18 107.5 9.7 119 19-151 6-129 (178)
132 3p26_A Elongation factor 1 alp 99.5 3.7E-13 1.3E-17 122.9 12.9 118 19-152 33-186 (483)
133 2qtf_A Protein HFLX, GTP-bindi 99.5 5.6E-13 1.9E-17 117.1 13.4 125 20-152 180-307 (364)
134 1gwn_A RHO-related GTP-binding 99.5 1.9E-13 6.4E-18 110.7 9.5 117 18-152 27-147 (205)
135 1nrj_B SR-beta, signal recogni 99.5 4.1E-13 1.4E-17 109.4 11.6 120 18-152 11-135 (218)
136 1xzp_A Probable tRNA modificat 99.5 5.5E-14 1.9E-18 127.6 6.9 120 20-152 244-365 (482)
137 2iwr_A Centaurin gamma 1; ANK 99.5 1.9E-13 6.5E-18 107.7 9.2 110 20-150 8-121 (178)
138 2a9k_A RAS-related protein RAL 99.5 7E-13 2.4E-17 104.9 12.5 117 19-151 18-137 (187)
139 3bwd_D RAC-like GTP-binding pr 99.5 1.3E-13 4.5E-18 108.8 8.1 115 20-152 9-127 (182)
140 1zun_B Sulfate adenylate trans 99.5 1.1E-12 3.8E-17 118.1 15.2 118 19-152 24-172 (434)
141 2cxx_A Probable GTP-binding pr 99.5 1.9E-13 6.5E-18 108.7 8.9 123 20-152 2-137 (190)
142 1wb1_A Translation elongation 99.4 1.1E-12 3.7E-17 119.5 14.7 117 19-152 19-140 (482)
143 2qpt_A EH domain-containing pr 99.4 1E-13 3.5E-18 128.1 7.9 134 19-162 65-241 (550)
144 2atv_A RERG, RAS-like estrogen 99.4 2E-13 6.8E-18 109.5 8.6 115 19-151 28-146 (196)
145 3zvr_A Dynamin-1; hydrolase, D 99.4 9.8E-12 3.3E-16 117.6 21.3 129 19-152 51-232 (772)
146 3o47_A ADP-ribosylation factor 99.4 1.4E-12 4.7E-17 113.3 14.4 115 20-152 166-281 (329)
147 2j0v_A RAC-like GTP-binding pr 99.4 3.2E-13 1.1E-17 109.6 9.8 114 20-152 10-128 (212)
148 4a9a_A Ribosome-interacting GT 99.4 5E-13 1.7E-17 117.2 11.6 130 12-150 65-195 (376)
149 3izq_1 HBS1P, elongation facto 99.4 1E-12 3.5E-17 122.8 14.1 118 19-152 167-320 (611)
150 3cbq_A GTP-binding protein REM 99.4 5.5E-13 1.9E-17 107.1 10.6 122 17-152 21-145 (195)
151 2f7s_A C25KG, RAS-related prot 99.4 2.3E-13 8E-18 110.8 8.5 116 19-151 25-155 (217)
152 3c5c_A RAS-like protein 12; GD 99.4 7.7E-13 2.6E-17 105.4 10.9 116 19-151 21-141 (187)
153 3izy_P Translation initiation 99.4 3.7E-14 1.3E-18 129.9 3.0 115 20-152 5-119 (537)
154 2h5e_A Peptide chain release f 99.4 1.2E-12 4.2E-17 120.2 13.1 117 19-152 13-149 (529)
155 3j2k_7 ERF3, eukaryotic polype 99.4 1.8E-12 6.1E-17 116.8 13.7 118 18-151 16-169 (439)
156 3ihw_A Centg3; RAS, centaurin, 99.4 9.2E-13 3.1E-17 104.7 10.6 112 17-150 18-132 (184)
157 1d2e_A Elongation factor TU (E 99.4 3.4E-12 1.2E-16 113.6 15.3 115 20-151 4-133 (397)
158 2zej_A Dardarin, leucine-rich 99.4 4.3E-13 1.5E-17 106.5 8.3 118 20-152 3-127 (184)
159 2xex_A Elongation factor G; GT 99.4 1.6E-12 5.5E-17 123.3 13.5 118 18-152 9-142 (693)
160 1dar_A EF-G, elongation factor 99.4 2.5E-12 8.5E-17 121.9 14.5 119 18-153 11-145 (691)
161 1jny_A EF-1-alpha, elongation 99.4 1.3E-12 4.5E-17 117.6 12.1 117 19-151 6-158 (435)
162 2c78_A Elongation factor TU-A; 99.4 1E-12 3.6E-17 117.3 10.8 116 19-151 11-142 (405)
163 1zo1_I IF2, translation initia 99.4 1.7E-13 5.8E-18 124.5 5.6 114 20-152 5-118 (501)
164 1lnz_A SPO0B-associated GTP-bi 99.4 3.5E-13 1.2E-17 117.3 7.2 127 20-152 159-289 (342)
165 2f9l_A RAB11B, member RAS onco 99.4 1.7E-12 5.7E-17 104.4 10.5 116 20-151 6-124 (199)
166 1g7s_A Translation initiation 99.4 1.2E-12 4.3E-17 121.6 11.0 114 20-151 6-136 (594)
167 1s0u_A EIF-2-gamma, translatio 99.4 1.3E-11 4.3E-16 110.4 16.7 120 18-152 7-150 (408)
168 3j25_A Tetracycline resistance 99.4 3.4E-13 1.2E-17 126.8 6.7 118 19-153 2-135 (638)
169 2g3y_A GTP-binding protein GEM 99.4 5E-12 1.7E-16 102.8 12.7 119 19-151 37-159 (211)
170 1kk1_A EIF2gamma; initiation o 99.4 6.1E-12 2.1E-16 112.5 14.4 119 19-152 10-152 (410)
171 4fn5_A EF-G 1, elongation fact 99.4 5E-12 1.7E-16 120.4 14.2 120 18-153 12-153 (709)
172 1f60_A Elongation factor EEF1A 99.4 4.4E-12 1.5E-16 114.9 13.2 116 20-151 8-159 (458)
173 2rdo_7 EF-G, elongation factor 99.4 1.1E-11 3.7E-16 117.7 15.9 118 19-153 10-150 (704)
174 3cb4_D GTP-binding protein LEP 99.4 3.9E-12 1.3E-16 118.2 12.2 118 19-152 4-138 (599)
175 3lvq_E ARF-GAP with SH3 domain 99.4 6.9E-12 2.4E-16 114.9 13.7 116 19-152 322-438 (497)
176 1oix_A RAS-related protein RAB 99.4 9.3E-12 3.2E-16 99.5 12.8 116 20-151 30-148 (191)
177 2ywe_A GTP-binding protein LEP 99.4 5.2E-12 1.8E-16 117.2 12.8 118 19-152 6-140 (600)
178 3sjy_A Translation initiation 99.4 2.2E-12 7.6E-17 115.1 10.0 119 19-152 8-144 (403)
179 1wxq_A GTP-binding protein; st 99.4 3.6E-12 1.2E-16 113.1 11.2 91 20-116 1-114 (397)
180 2dy1_A Elongation factor G; tr 99.4 8.7E-12 3E-16 117.8 14.5 120 12-150 4-139 (665)
181 2elf_A Protein translation elo 99.3 5.2E-12 1.8E-16 111.2 11.1 102 21-149 23-125 (370)
182 3th5_A RAS-related C3 botulinu 99.0 1.2E-13 4.1E-18 111.5 0.0 118 18-152 29-149 (204)
183 2cjw_A GTP-binding protein GEM 99.3 4.4E-12 1.5E-16 101.5 9.0 119 19-151 6-128 (192)
184 1udx_A The GTP-binding protein 99.3 7.6E-12 2.6E-16 111.4 11.3 136 7-152 147-284 (416)
185 3r7w_B Gtpase2, GTP-binding pr 99.3 1.5E-11 5E-16 105.6 11.5 118 21-152 1-121 (331)
186 2qnr_A Septin-2, protein NEDD5 99.3 2.8E-11 9.5E-16 103.7 12.6 127 20-152 19-170 (301)
187 2wkq_A NPH1-1, RAS-related C3 99.3 1.7E-11 5.8E-16 106.1 11.0 115 20-152 156-274 (332)
188 3mca_A HBS1, elongation factor 99.3 4.8E-13 1.6E-17 124.6 1.2 118 18-151 176-329 (592)
189 1r5b_A Eukaryotic peptide chai 99.3 9.3E-12 3.2E-16 113.0 9.0 117 19-151 43-195 (467)
190 3avx_A Elongation factor TS, e 99.2 5.1E-11 1.7E-15 116.4 12.9 119 18-152 295-427 (1289)
191 1n0u_A EF-2, elongation factor 99.2 9.9E-12 3.4E-16 120.2 7.9 116 19-150 19-163 (842)
192 3dpu_A RAB family protein; roc 99.2 2.4E-11 8.4E-16 112.2 10.2 118 19-152 41-165 (535)
193 3szr_A Interferon-induced GTP- 99.2 4E-10 1.4E-14 105.4 14.1 129 20-152 46-229 (608)
194 1jal_A YCHF protein; nucleotid 99.1 4.7E-11 1.6E-15 104.1 7.0 90 20-115 3-108 (363)
195 3h2y_A GTPase family protein; 99.1 3.3E-12 1.1E-16 112.4 -2.3 123 20-152 161-288 (368)
196 1tq4_A IIGP1, interferon-induc 99.1 1.6E-10 5.4E-15 102.6 8.0 131 6-150 38-188 (413)
197 2p67_A LAO/AO transport system 99.1 1.2E-10 4.3E-15 101.4 6.3 33 8-42 47-79 (341)
198 2dby_A GTP-binding protein; GD 99.1 3.2E-10 1.1E-14 99.4 8.6 90 20-115 2-111 (368)
199 3ec1_A YQEH GTPase; atnos1, at 99.0 2.6E-12 8.9E-17 113.2 -6.1 122 20-152 163-289 (369)
200 2ohf_A Protein OLA1, GTP-bindi 99.0 3.8E-10 1.3E-14 99.4 7.7 94 13-114 18-127 (396)
201 2qm8_A GTPase/ATPase; G protei 99.0 2.4E-10 8.1E-15 99.4 5.5 35 6-42 44-78 (337)
202 1mv5_A LMRA, multidrug resista 99.0 5.6E-10 1.9E-14 92.6 7.5 150 3-163 14-184 (243)
203 1sgw_A Putative ABC transporte 99.0 2.6E-10 8.8E-15 92.6 5.3 138 5-162 23-177 (214)
204 2j37_W Signal recognition part 99.0 4.2E-09 1.4E-13 95.8 13.6 122 18-153 100-256 (504)
205 2pcj_A ABC transporter, lipopr 99.0 5.5E-10 1.9E-14 91.5 6.6 44 3-48 16-59 (224)
206 3p32_A Probable GTPase RV1496/ 99.0 8.9E-10 3E-14 96.6 8.2 24 18-41 78-101 (355)
207 1vpl_A ABC transporter, ATP-bi 99.0 6E-10 2E-14 93.0 6.6 44 3-48 27-70 (256)
208 3tif_A Uncharacterized ABC tra 99.0 1.1E-09 3.7E-14 90.4 8.0 43 5-49 19-61 (235)
209 1f5n_A Interferon-induced guan 99.0 1.9E-09 6.6E-14 99.6 10.4 107 18-130 37-147 (592)
210 2www_A Methylmalonic aciduria 99.0 8.2E-10 2.8E-14 96.5 7.4 23 20-42 75-97 (349)
211 2olj_A Amino acid ABC transpor 99.0 7.3E-10 2.5E-14 92.8 6.8 44 3-48 36-79 (263)
212 2pze_A Cystic fibrosis transme 99.0 1.2E-09 4.1E-14 89.7 7.7 135 3-160 20-172 (229)
213 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.2E-09 3.9E-14 96.5 8.0 94 13-114 16-126 (392)
214 3c5h_A Glucocorticoid receptor 98.9 1.8E-10 6.3E-15 96.2 1.9 47 103-151 162-212 (255)
215 2nq2_C Hypothetical ABC transp 98.9 5.8E-11 2E-15 99.1 -1.6 45 3-49 17-61 (253)
216 2yhs_A FTSY, cell division pro 98.9 1.5E-09 5E-14 97.8 7.3 143 7-162 283-462 (503)
217 2cbz_A Multidrug resistance-as 98.9 3.2E-09 1.1E-13 87.6 8.5 44 3-48 17-60 (237)
218 3nh6_A ATP-binding cassette SU 98.9 3.1E-10 1.1E-14 97.0 2.3 44 3-48 66-109 (306)
219 3gfo_A Cobalt import ATP-bindi 98.9 1.4E-09 4.7E-14 91.7 5.6 43 4-48 21-63 (275)
220 1puj_A YLQF, conserved hypothe 98.9 6.4E-09 2.2E-13 88.1 8.6 64 20-88 121-184 (282)
221 2it1_A 362AA long hypothetical 98.9 4.4E-09 1.5E-13 91.9 7.8 46 2-49 14-59 (362)
222 1z47_A CYSA, putative ABC-tran 98.9 3.2E-09 1.1E-13 92.4 6.9 46 2-49 26-71 (355)
223 3fvq_A Fe(3+) IONS import ATP- 98.8 8.1E-09 2.8E-13 89.9 8.8 46 2-49 15-60 (359)
224 3rlf_A Maltose/maltodextrin im 98.8 4.4E-09 1.5E-13 92.2 6.6 46 2-49 14-59 (381)
225 3tui_C Methionine import ATP-b 98.8 5.4E-09 1.8E-13 91.1 6.9 42 5-48 42-83 (366)
226 1oxx_K GLCV, glucose, ABC tran 98.8 5.8E-09 2E-13 90.9 6.9 145 6-162 20-184 (353)
227 3b9q_A Chloroplast SRP recepto 98.8 1.4E-08 4.8E-13 86.7 9.0 134 8-153 91-262 (302)
228 2bbs_A Cystic fibrosis transme 98.8 1.6E-08 5.5E-13 85.8 9.0 132 4-160 51-201 (290)
229 2yyz_A Sugar ABC transporter, 98.8 4.3E-09 1.5E-13 91.8 5.3 45 3-49 15-59 (359)
230 1v43_A Sugar-binding transport 98.8 7.2E-10 2.5E-14 97.2 0.1 45 3-49 23-67 (372)
231 1g29_1 MALK, maltose transport 98.8 1E-08 3.5E-13 90.0 7.3 45 3-49 15-59 (372)
232 3b5x_A Lipid A export ATP-bind 98.8 9.9E-09 3.4E-13 95.7 7.6 147 4-162 356-524 (582)
233 2pjz_A Hypothetical protein ST 98.8 6.1E-10 2.1E-14 93.3 -0.7 42 4-49 18-59 (263)
234 3d31_A Sulfate/molybdate ABC t 98.8 6.1E-09 2.1E-13 90.5 5.5 41 6-48 15-55 (348)
235 2og2_A Putative signal recogni 98.8 2.2E-08 7.4E-13 87.4 8.7 137 9-157 149-323 (359)
236 1b0u_A Histidine permease; ABC 98.7 4.7E-09 1.6E-13 88.0 3.1 45 3-49 18-62 (262)
237 4g1u_C Hemin import ATP-bindin 98.7 4.7E-09 1.6E-13 88.1 2.9 45 2-48 22-66 (266)
238 1g6h_A High-affinity branched- 98.7 4.4E-09 1.5E-13 87.9 2.6 45 3-49 19-63 (257)
239 1yrb_A ATP(GTP)binding protein 98.7 1.4E-07 4.7E-12 78.7 11.5 76 69-152 109-186 (262)
240 1ji0_A ABC transporter; ATP bi 98.7 5.6E-09 1.9E-13 86.4 2.6 45 3-49 18-62 (240)
241 1rj9_A FTSY, signal recognitio 98.7 5.8E-08 2E-12 83.0 9.0 123 20-152 103-262 (304)
242 3qf4_A ABC transporter, ATP-bi 98.7 9.8E-09 3.4E-13 95.7 4.5 149 4-162 356-523 (587)
243 2onk_A Molybdate/tungstate ABC 98.7 1.5E-08 5.2E-13 83.7 4.9 40 6-48 14-53 (240)
244 2ff7_A Alpha-hemolysin translo 98.7 7.1E-09 2.4E-13 86.1 2.9 45 3-49 21-65 (247)
245 2ihy_A ABC transporter, ATP-bi 98.7 6.4E-09 2.2E-13 87.9 2.5 45 3-49 33-77 (279)
246 3dm5_A SRP54, signal recogniti 98.7 1.3E-07 4.6E-12 84.3 11.0 122 19-152 100-254 (443)
247 3cnl_A YLQF, putative uncharac 98.7 1.6E-08 5.4E-13 84.7 4.6 60 20-84 100-159 (262)
248 4f4c_A Multidrug resistance pr 98.6 4.2E-08 1.4E-12 99.3 8.3 149 4-163 1092-1262(1321)
249 2ixe_A Antigen peptide transpo 98.6 1.4E-08 4.8E-13 85.5 3.9 44 4-49 32-75 (271)
250 3qf4_B Uncharacterized ABC tra 98.6 7.9E-08 2.7E-12 89.9 8.9 43 4-48 368-410 (598)
251 4a82_A Cystic fibrosis transme 98.6 5.7E-08 2E-12 90.5 7.8 43 4-48 354-396 (578)
252 4f4c_A Multidrug resistance pr 98.6 3.9E-08 1.3E-12 99.6 6.8 149 3-162 430-598 (1321)
253 2yz2_A Putative ABC transporte 98.6 1.5E-08 5.2E-13 85.1 3.1 44 4-49 20-63 (266)
254 2d2e_A SUFC protein; ABC-ATPas 98.6 1.2E-08 4.2E-13 84.9 2.3 38 3-42 15-52 (250)
255 3e70_C DPA, signal recognition 98.6 9.4E-08 3.2E-12 82.5 7.8 124 15-152 127-283 (328)
256 3b60_A Lipid A export ATP-bind 98.6 1.1E-07 3.6E-12 88.7 8.7 43 4-48 356-398 (582)
257 2zu0_C Probable ATP-dependent 98.6 1.7E-08 5.8E-13 84.8 2.8 39 3-43 32-70 (267)
258 2qi9_C Vitamin B12 import ATP- 98.6 2.3E-08 7.9E-13 83.0 2.9 40 5-46 14-53 (249)
259 2v3c_C SRP54, signal recogniti 98.6 9E-08 3.1E-12 85.7 6.9 124 17-152 97-253 (432)
260 3kl4_A SRP54, signal recogniti 98.5 6.7E-08 2.3E-12 86.2 5.5 125 19-153 97-254 (433)
261 2yl4_A ATP-binding cassette SU 98.5 2.1E-07 7.3E-12 86.9 8.9 42 5-48 358-399 (595)
262 1t9h_A YLOQ, probable GTPase E 98.5 2.2E-08 7.7E-13 85.4 2.0 64 12-82 168-237 (307)
263 1j8m_F SRP54, signal recogniti 98.5 6E-07 2E-11 76.4 10.7 130 10-152 92-254 (297)
264 3q5d_A Atlastin-1; G protein, 98.5 2.6E-07 8.9E-12 82.7 8.8 108 17-130 65-195 (447)
265 2ghi_A Transport protein; mult 98.5 4.6E-08 1.6E-12 81.8 3.6 40 4-45 33-72 (260)
266 1yqt_A RNAse L inhibitor; ATP- 98.5 1.1E-07 3.9E-12 87.5 6.3 134 7-162 302-445 (538)
267 1zcb_A G alpha I/13; GTP-bindi 98.5 4.6E-07 1.6E-11 79.2 9.0 79 60-150 193-281 (362)
268 2wsm_A Hydrogenase expression/ 98.5 1.1E-07 3.8E-12 77.2 4.6 24 19-42 30-53 (221)
269 1htw_A HI0065; nucleotide-bind 98.5 4.9E-08 1.7E-12 75.3 2.4 41 6-49 22-62 (158)
270 4fid_A G protein alpha subunit 98.4 1E-06 3.6E-11 76.0 10.1 79 59-151 152-242 (340)
271 1vma_A Cell division protein F 98.4 3.2E-07 1.1E-11 78.4 6.4 132 10-153 97-265 (306)
272 1z6g_A Guanylate kinase; struc 98.4 9.6E-08 3.3E-12 77.7 2.6 38 4-43 10-47 (218)
273 3bk7_A ABC transporter ATP-bin 98.4 1.6E-07 5.5E-12 87.6 4.3 42 7-50 372-413 (607)
274 2jeo_A Uridine-cytidine kinase 98.4 1.4E-07 4.7E-12 78.2 3.2 40 2-43 10-49 (245)
275 3gd7_A Fusion complex of cysti 98.4 1.5E-07 5.2E-12 83.0 3.5 41 2-44 32-72 (390)
276 3ohm_A Guanine nucleotide-bind 98.4 3.4E-06 1.2E-10 72.5 11.5 84 55-150 154-247 (327)
277 3g5u_A MCG1178, multidrug resi 98.4 7.9E-07 2.7E-11 89.9 8.6 43 4-48 403-445 (1284)
278 1cip_A Protein (guanine nucleo 98.3 2.1E-06 7.2E-11 74.8 9.7 81 58-150 183-273 (353)
279 3g5u_A MCG1178, multidrug resi 98.3 2.5E-07 8.5E-12 93.5 4.4 147 5-162 1047-1215(1284)
280 2yv5_A YJEQ protein; hydrolase 98.3 7.1E-07 2.4E-11 76.2 6.5 61 15-82 163-229 (302)
281 3ozx_A RNAse L inhibitor; ATP 98.3 1.9E-07 6.4E-12 86.0 3.0 38 10-49 287-324 (538)
282 1zu4_A FTSY; GTPase, signal re 98.3 1.3E-06 4.5E-11 75.1 8.0 133 8-152 96-269 (320)
283 2rcn_A Probable GTPase ENGC; Y 98.3 2.7E-07 9.2E-12 80.3 3.2 30 20-49 216-246 (358)
284 2xxa_A Signal recognition part 98.3 7.4E-06 2.5E-10 73.3 12.1 124 17-152 98-255 (433)
285 2ffh_A Protein (FFH); SRP54, s 98.3 2.6E-06 8.9E-11 75.8 8.6 129 8-152 91-252 (425)
286 4gp7_A Metallophosphoesterase; 98.3 4E-07 1.4E-11 71.1 3.0 31 9-41 1-31 (171)
287 2v9p_A Replication protein E1; 98.2 2.1E-07 7.1E-12 79.3 1.4 36 6-43 115-150 (305)
288 1u0l_A Probable GTPase ENGC; p 98.2 4.5E-07 1.5E-11 77.4 3.5 59 20-82 170-234 (301)
289 1yqt_A RNAse L inhibitor; ATP- 98.2 9.9E-07 3.4E-11 81.2 5.0 41 6-49 37-77 (538)
290 4ido_A Atlastin-1; GTPase, GTP 98.2 2.2E-05 7.7E-10 69.9 13.1 109 16-130 64-195 (457)
291 2px0_A Flagellar biosynthesis 98.2 1.4E-06 4.8E-11 74.1 5.2 129 20-162 106-263 (296)
292 1znw_A Guanylate kinase, GMP k 98.2 7.3E-07 2.5E-11 71.8 3.0 35 5-43 10-44 (207)
293 3thx_A DNA mismatch repair pro 98.2 1.9E-05 6.5E-10 76.9 13.3 35 3-39 648-682 (934)
294 2iw3_A Elongation factor 3A; a 98.1 4.7E-07 1.6E-11 88.0 1.7 44 4-49 686-729 (986)
295 3bk7_A ABC transporter ATP-bin 98.1 1.5E-06 5.1E-11 81.1 4.9 41 6-49 107-147 (607)
296 1ls1_A Signal recognition part 98.1 2.5E-06 8.6E-11 72.5 5.9 129 8-152 91-252 (295)
297 3thx_B DNA mismatch repair pro 98.1 1E-05 3.5E-10 78.6 9.8 37 3-41 659-695 (918)
298 3lnc_A Guanylate kinase, GMP k 98.1 1.1E-06 3.6E-11 72.0 1.9 37 5-43 15-52 (231)
299 2xtz_A Guanine nucleotide-bind 98.0 2.8E-05 9.7E-10 67.6 10.7 70 68-150 182-263 (354)
300 2eyu_A Twitching motility prot 98.0 1.7E-06 6E-11 72.2 2.8 38 4-45 14-51 (261)
301 3tr0_A Guanylate kinase, GMP k 98.0 2.2E-06 7.5E-11 68.5 3.2 30 12-43 2-31 (205)
302 1azs_C GS-alpha; complex (lyas 98.0 2.9E-05 9.8E-10 68.6 10.2 76 61-150 210-297 (402)
303 2iw3_A Elongation factor 3A; a 98.0 1.3E-06 4.4E-11 85.0 1.6 39 2-42 446-484 (986)
304 2gza_A Type IV secretion syste 98.0 1.3E-06 4.4E-11 76.5 1.3 38 8-47 166-203 (361)
305 4aby_A DNA repair protein RECN 98.0 8.3E-06 2.8E-10 72.6 6.5 34 6-42 50-83 (415)
306 1s96_A Guanylate kinase, GMP k 98.0 3E-06 1E-10 68.9 3.0 30 13-44 12-41 (219)
307 3ozx_A RNAse L inhibitor; ATP 98.0 5.5E-06 1.9E-10 76.2 5.1 42 7-50 14-56 (538)
308 2pt7_A CAG-ALFA; ATPase, prote 98.0 7.7E-07 2.6E-11 76.9 -0.7 40 6-47 160-199 (330)
309 3b85_A Phosphate starvation-in 98.0 1.7E-06 5.8E-11 69.7 1.3 33 15-50 20-52 (208)
310 2hf9_A Probable hydrogenase ni 98.0 7.4E-06 2.5E-10 66.4 5.1 25 19-43 38-62 (226)
311 1ye8_A Protein THEP1, hypothet 97.9 3.2E-06 1.1E-10 66.4 2.7 24 21-44 2-25 (178)
312 2npi_A Protein CLP1; CLP1-PCF1 97.9 1.9E-06 6.6E-11 77.6 1.3 39 8-48 129-167 (460)
313 1zp6_A Hypothetical protein AT 97.9 7.4E-06 2.5E-10 64.7 4.1 27 14-42 6-32 (191)
314 3euj_A Chromosome partition pr 97.9 3.9E-06 1.3E-10 75.7 2.5 42 5-49 18-59 (483)
315 2obl_A ESCN; ATPase, hydrolase 97.9 2E-06 6.9E-11 74.8 0.6 40 4-46 59-98 (347)
316 1lvg_A Guanylate kinase, GMP k 97.9 4E-06 1.4E-10 66.9 2.3 24 20-43 5-28 (198)
317 3j16_B RLI1P; ribosome recycli 97.9 9.3E-06 3.2E-10 75.7 4.9 36 13-50 99-134 (608)
318 3j16_B RLI1P; ribosome recycli 97.9 6.5E-06 2.2E-10 76.7 3.7 44 6-49 362-408 (608)
319 3asz_A Uridine kinase; cytidin 97.8 6.8E-06 2.3E-10 66.1 3.0 28 14-43 3-30 (211)
320 1wb9_A DNA mismatch repair pro 97.8 5.7E-05 1.9E-09 72.5 9.8 38 3-43 594-631 (800)
321 2dpy_A FLII, flagellum-specifi 97.8 3.5E-06 1.2E-10 75.5 1.3 40 4-46 145-184 (438)
322 3jvv_A Twitching mobility prot 97.8 6.8E-05 2.3E-09 65.3 9.3 32 13-46 119-150 (356)
323 3vaa_A Shikimate kinase, SK; s 97.8 1E-05 3.5E-10 64.5 3.6 38 4-43 12-49 (199)
324 3a00_A Guanylate kinase, GMP k 97.8 5.5E-06 1.9E-10 65.4 1.7 25 20-44 2-26 (186)
325 2j41_A Guanylate kinase; GMP, 97.8 1.1E-05 3.7E-10 64.5 3.4 30 12-43 1-30 (207)
326 1ewq_A DNA mismatch repair pro 97.8 6.2E-05 2.1E-09 71.9 9.1 36 4-44 566-601 (765)
327 3c8u_A Fructokinase; YP_612366 97.8 1E-05 3.5E-10 65.0 3.0 28 15-44 20-47 (208)
328 1lw7_A Transcriptional regulat 97.8 6.5E-06 2.2E-10 72.1 2.0 38 8-47 159-198 (365)
329 2o8b_B DNA mismatch repair pro 97.8 0.00011 3.6E-09 72.5 10.6 40 3-45 768-814 (1022)
330 1kgd_A CASK, peripheral plasma 97.7 1.3E-05 4.5E-10 62.8 3.0 24 20-43 6-29 (180)
331 2ehv_A Hypothetical protein PH 97.7 2E-05 6.9E-10 64.8 3.9 26 13-40 26-51 (251)
332 3aez_A Pantothenate kinase; tr 97.7 1.9E-05 6.6E-10 67.6 3.7 30 14-45 87-116 (312)
333 3ux8_A Excinuclease ABC, A sub 97.7 1.5E-05 5.2E-10 75.4 3.3 31 4-36 31-61 (670)
334 3ux8_A Excinuclease ABC, A sub 97.7 1.1E-05 3.9E-10 76.3 2.3 34 5-40 336-369 (670)
335 3ney_A 55 kDa erythrocyte memb 97.7 1.9E-05 6.5E-10 62.8 3.2 31 11-43 13-43 (197)
336 2i3b_A HCR-ntpase, human cance 97.7 1.6E-05 5.3E-10 63.0 2.5 25 20-44 2-26 (189)
337 3nwj_A ATSK2; P loop, shikimat 97.7 5.8E-06 2E-10 68.5 -0.2 39 3-43 31-72 (250)
338 2oap_1 GSPE-2, type II secreti 97.7 7.4E-06 2.5E-10 74.8 0.5 38 7-46 250-287 (511)
339 1sq5_A Pantothenate kinase; P- 97.7 7E-06 2.4E-10 70.2 0.3 28 15-44 78-105 (308)
340 3kta_A Chromosome segregation 97.7 3E-05 1E-09 60.7 3.8 33 8-43 18-50 (182)
341 4eun_A Thermoresistant glucoki 97.6 2.3E-05 7.8E-10 62.5 3.0 29 12-42 24-52 (200)
342 3uie_A Adenylyl-sulfate kinase 97.6 1.7E-05 5.9E-10 63.2 2.2 35 8-44 16-50 (200)
343 1cr0_A DNA primase/helicase; R 97.6 1.9E-05 6.6E-10 66.9 2.5 40 5-46 23-62 (296)
344 2bbw_A Adenylate kinase 4, AK4 97.6 2.9E-05 9.9E-10 64.0 3.3 28 20-47 28-58 (246)
345 4a74_A DNA repair and recombin 97.6 1.3E-05 4.3E-10 65.1 1.0 30 13-44 21-50 (231)
346 3ec2_A DNA replication protein 97.6 2.4E-05 8.1E-10 61.2 2.1 30 13-44 34-63 (180)
347 3tau_A Guanylate kinase, GMP k 97.6 4.2E-05 1.4E-09 61.4 3.5 28 15-44 6-33 (208)
348 2ewv_A Twitching motility prot 97.5 3.2E-05 1.1E-09 67.9 2.8 30 14-45 133-162 (372)
349 1tf7_A KAIC; homohexamer, hexa 97.5 2.2E-05 7.7E-10 72.1 1.9 40 3-44 24-66 (525)
350 2x8a_A Nuclear valosin-contain 97.5 2.3E-05 7.9E-10 65.8 1.6 35 5-43 34-68 (274)
351 4e22_A Cytidylate kinase; P-lo 97.5 4.5E-05 1.5E-09 63.2 3.4 28 20-47 28-58 (252)
352 1svm_A Large T antigen; AAA+ f 97.4 3.6E-05 1.2E-09 67.5 1.9 35 6-42 158-192 (377)
353 2bdt_A BH3686; alpha-beta prot 97.4 4.8E-05 1.6E-09 59.9 2.4 22 20-41 3-24 (189)
354 2vp4_A Deoxynucleoside kinase; 97.4 6.4E-05 2.2E-09 61.3 3.2 30 11-42 14-43 (230)
355 1knq_A Gluconate kinase; ALFA/ 97.4 7.8E-05 2.7E-09 57.9 3.4 23 20-42 9-31 (175)
356 4b4t_L 26S protease subunit RP 97.4 0.0011 3.6E-08 59.2 11.1 24 20-43 216-239 (437)
357 1p9r_A General secretion pathw 97.4 5.9E-05 2E-09 67.1 2.8 30 15-46 165-194 (418)
358 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 0.00011 3.7E-09 55.7 3.5 29 9-40 16-44 (149)
359 3qf7_A RAD50; ABC-ATPase, ATPa 97.4 7.4E-05 2.5E-09 65.4 2.8 31 7-40 14-44 (365)
360 1kag_A SKI, shikimate kinase I 97.4 7.5E-05 2.6E-09 57.8 2.5 24 20-43 5-28 (173)
361 1ixz_A ATP-dependent metallopr 97.3 5.9E-05 2E-09 62.4 1.5 33 7-43 41-73 (254)
362 1y63_A LMAJ004144AAA protein; 97.3 0.00016 5.6E-09 56.7 3.8 31 10-42 3-33 (184)
363 2qt1_A Nicotinamide riboside k 97.3 0.00019 6.6E-09 57.3 4.2 29 13-43 17-45 (207)
364 4b4t_J 26S protease regulatory 97.3 0.0021 7.1E-08 56.6 10.8 24 20-43 183-206 (405)
365 2o5v_A DNA replication and rep 97.3 0.00012 4.1E-09 63.8 2.9 33 6-41 16-48 (359)
366 4b4t_I 26S protease regulatory 97.3 0.0013 4.5E-08 58.2 9.5 24 20-43 217-240 (437)
367 2w0m_A SSO2452; RECA, SSPF, un 97.2 8.5E-05 2.9E-09 60.2 1.8 35 7-43 12-47 (235)
368 1iy2_A ATP-dependent metallopr 97.2 7.9E-05 2.7E-09 62.6 1.6 33 7-43 65-97 (278)
369 4b4t_K 26S protease regulatory 97.2 0.0026 8.8E-08 56.6 11.1 24 20-43 207-230 (428)
370 1jjv_A Dephospho-COA kinase; P 97.2 0.00019 6.6E-09 57.2 3.6 22 20-41 3-24 (206)
371 2f1r_A Molybdopterin-guanine d 97.2 6.7E-05 2.3E-09 58.3 0.6 26 20-45 3-28 (171)
372 3tqc_A Pantothenate kinase; bi 97.2 0.00019 6.6E-09 61.4 3.5 26 18-43 91-116 (321)
373 2kjq_A DNAA-related protein; s 97.2 0.00013 4.4E-09 55.3 2.1 25 20-44 37-61 (149)
374 1nij_A Hypothetical protein YJ 97.2 0.00017 5.9E-09 61.8 3.2 25 19-43 4-28 (318)
375 1rz3_A Hypothetical protein rb 97.2 0.00019 6.6E-09 57.1 3.2 24 20-43 23-46 (201)
376 1cke_A CK, MSSA, protein (cyti 97.2 0.00018 6E-09 58.2 2.8 24 20-43 6-29 (227)
377 2if2_A Dephospho-COA kinase; a 97.2 0.00017 5.7E-09 57.4 2.6 22 20-41 2-23 (204)
378 2ygr_A Uvrabc system protein A 97.1 0.00013 4.5E-09 70.9 1.7 33 6-40 657-689 (993)
379 2qor_A Guanylate kinase; phosp 97.1 0.00026 8.8E-09 56.5 3.2 24 20-43 13-36 (204)
380 1qhl_A Protein (cell division 97.1 2.5E-05 8.5E-10 63.6 -2.9 28 21-48 29-56 (227)
381 3qks_A DNA double-strand break 97.1 0.00034 1.2E-08 55.9 3.5 29 9-40 16-44 (203)
382 4dzz_A Plasmid partitioning pr 97.0 0.002 6.8E-08 51.0 8.0 82 68-163 75-156 (206)
383 4b4t_M 26S protease regulatory 97.0 0.0016 5.5E-08 58.0 8.0 24 20-43 216-239 (434)
384 1e69_A Chromosome segregation 97.0 0.00035 1.2E-08 60.0 3.6 31 8-41 16-46 (322)
385 4b4t_H 26S protease regulatory 97.0 0.0033 1.1E-07 56.2 9.8 24 20-43 244-267 (467)
386 2r6f_A Excinuclease ABC subuni 97.0 0.00014 4.8E-09 70.5 0.7 33 6-40 639-671 (972)
387 1ex7_A Guanylate kinase; subst 97.0 0.00041 1.4E-08 54.6 3.0 23 21-43 3-25 (186)
388 1sxj_E Activator 1 40 kDa subu 96.9 0.0058 2E-07 52.7 10.5 23 20-42 37-59 (354)
389 2cvh_A DNA repair and recombin 96.9 0.00044 1.5E-08 55.4 3.1 27 13-41 16-42 (220)
390 1np6_A Molybdopterin-guanine d 96.9 0.00043 1.5E-08 53.9 2.8 24 20-43 7-30 (174)
391 1n0w_A DNA repair protein RAD5 96.9 0.0002 7E-09 58.4 1.0 28 13-42 20-47 (243)
392 2vf7_A UVRA2, excinuclease ABC 96.9 0.00011 3.8E-09 70.7 -1.1 34 6-41 512-546 (842)
393 3t61_A Gluconokinase; PSI-biol 96.9 0.00051 1.8E-08 54.5 3.0 23 20-42 19-41 (202)
394 1odf_A YGR205W, hypothetical 3 96.9 0.00058 2E-08 57.7 3.4 27 18-44 30-56 (290)
395 1qvr_A CLPB protein; coiled co 96.9 0.055 1.9E-06 52.5 17.7 24 20-43 192-215 (854)
396 3qkt_A DNA double-strand break 96.8 0.00047 1.6E-08 59.6 2.8 27 11-40 18-44 (339)
397 1pzn_A RAD51, DNA repair and r 96.8 0.00023 7.8E-09 61.9 0.7 31 11-43 125-155 (349)
398 3kb2_A SPBC2 prophage-derived 96.8 0.00065 2.2E-08 52.2 3.2 23 20-42 2-24 (173)
399 3lw7_A Adenylate kinase relate 96.8 0.00066 2.2E-08 52.1 3.2 20 20-39 2-21 (179)
400 3pih_A Uvrabc system protein A 96.8 0.00052 1.8E-08 66.7 3.1 31 5-37 598-628 (916)
401 2pez_A Bifunctional 3'-phospho 96.8 0.00064 2.2E-08 52.8 3.1 24 20-43 6-29 (179)
402 1sxj_C Activator 1 40 kDa subu 96.8 0.00088 3E-08 57.8 4.2 34 11-44 38-71 (340)
403 1nlf_A Regulatory protein REPA 96.8 0.00056 1.9E-08 57.3 2.8 28 13-42 26-53 (279)
404 3cm0_A Adenylate kinase; ATP-b 96.8 0.00075 2.6E-08 52.6 3.2 22 20-41 5-26 (186)
405 1ly1_A Polynucleotide kinase; 96.7 0.0009 3.1E-08 51.7 3.5 22 20-41 3-24 (181)
406 4eaq_A DTMP kinase, thymidylat 96.7 0.0011 3.7E-08 54.0 4.0 26 16-43 25-50 (229)
407 1w1w_A Structural maintenance 96.7 0.00072 2.5E-08 60.4 3.1 32 12-45 21-52 (430)
408 1in4_A RUVB, holliday junction 96.7 0.0006 2.1E-08 58.8 2.5 24 20-43 52-75 (334)
409 2cdn_A Adenylate kinase; phosp 96.7 0.0011 3.8E-08 52.5 3.8 22 20-41 21-42 (201)
410 2chg_A Replication factor C sm 96.7 0.012 4.2E-07 46.5 10.1 23 20-42 39-61 (226)
411 2yvu_A Probable adenylyl-sulfa 96.7 0.0012 4.3E-08 51.5 4.0 28 14-43 10-37 (186)
412 2jaq_A Deoxyguanosine kinase; 96.6 0.0011 3.6E-08 52.5 3.3 22 21-42 2-23 (205)
413 2dhr_A FTSH; AAA+ protein, hex 96.6 0.00086 2.9E-08 60.9 3.0 35 5-43 54-88 (499)
414 1qhx_A CPT, protein (chloramph 96.6 0.0012 3.9E-08 51.1 3.4 24 20-43 4-27 (178)
415 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.013 4.5E-07 48.0 10.0 23 20-42 40-62 (262)
416 3trf_A Shikimate kinase, SK; a 96.6 0.0012 4.1E-08 51.4 3.4 22 20-41 6-27 (185)
417 3iij_A Coilin-interacting nucl 96.6 0.0013 4.6E-08 51.0 3.5 21 20-40 12-32 (180)
418 3cr8_A Sulfate adenylyltranfer 96.6 0.00055 1.9E-08 63.0 1.5 31 13-45 365-395 (552)
419 1kht_A Adenylate kinase; phosp 96.6 0.0013 4.5E-08 51.3 3.5 22 20-41 4-25 (192)
420 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00074 2.5E-08 58.4 2.1 37 7-43 12-48 (359)
421 1uf9_A TT1252 protein; P-loop, 96.6 0.0015 5E-08 51.6 3.7 24 19-42 8-31 (203)
422 2rhm_A Putative kinase; P-loop 96.6 0.0017 5.7E-08 50.9 3.8 22 20-41 6-27 (193)
423 1via_A Shikimate kinase; struc 96.5 0.0012 4.3E-08 50.9 2.9 23 20-42 5-27 (175)
424 1m7g_A Adenylylsulfate kinase; 96.5 0.0016 5.4E-08 52.1 3.5 29 13-43 21-49 (211)
425 1njg_A DNA polymerase III subu 96.5 0.0019 6.6E-08 52.0 4.1 24 20-43 46-69 (250)
426 1nks_A Adenylate kinase; therm 96.5 0.0015 5.3E-08 51.0 3.3 23 20-42 2-24 (194)
427 3pxg_A Negative regulator of g 96.5 0.0067 2.3E-07 54.7 7.9 24 20-43 202-225 (468)
428 3fb4_A Adenylate kinase; psych 96.5 0.0016 5.3E-08 52.2 3.3 21 21-41 2-22 (216)
429 2ze6_A Isopentenyl transferase 96.5 0.0016 5.5E-08 53.8 3.4 23 20-42 2-24 (253)
430 2v54_A DTMP kinase, thymidylat 96.5 0.0019 6.6E-08 51.0 3.7 24 20-43 5-28 (204)
431 1ukz_A Uridylate kinase; trans 96.5 0.0024 8.2E-08 50.5 4.2 23 19-41 15-37 (203)
432 1lv7_A FTSH; alpha/beta domain 96.4 0.0014 4.8E-08 54.0 2.8 24 20-43 46-69 (257)
433 1xjc_A MOBB protein homolog; s 96.4 0.0019 6.6E-08 49.8 3.4 23 20-42 5-27 (169)
434 3dl0_A Adenylate kinase; phosp 96.4 0.0018 6E-08 51.9 3.3 21 21-41 2-22 (216)
435 3auy_A DNA double-strand break 96.4 0.0013 4.5E-08 57.5 2.7 30 8-40 17-46 (371)
436 1nn5_A Similar to deoxythymidy 96.4 0.002 7E-08 51.3 3.6 23 20-42 10-32 (215)
437 3h4m_A Proteasome-activating n 96.4 0.012 4E-07 49.1 8.4 23 20-42 52-74 (285)
438 1tev_A UMP-CMP kinase; ploop, 96.4 0.002 6.7E-08 50.4 3.5 22 20-41 4-25 (196)
439 1aky_A Adenylate kinase; ATP:A 96.4 0.002 7E-08 51.7 3.6 22 20-41 5-26 (220)
440 1qf9_A UMP/CMP kinase, protein 96.4 0.0025 8.6E-08 49.7 4.0 22 20-41 7-28 (194)
441 3end_A Light-independent proto 96.4 0.015 5.3E-07 49.1 9.2 22 19-40 41-62 (307)
442 1vht_A Dephospho-COA kinase; s 96.4 0.0021 7.1E-08 51.6 3.5 22 20-41 5-26 (218)
443 3cf2_A TER ATPase, transitiona 96.4 0.012 4.2E-07 56.4 9.3 24 20-43 239-262 (806)
444 2plr_A DTMP kinase, probable t 96.4 0.0022 7.7E-08 50.9 3.7 23 20-42 5-27 (213)
445 2c95_A Adenylate kinase 1; tra 96.4 0.0022 7.7E-08 50.2 3.5 22 20-41 10-31 (196)
446 1gvn_B Zeta; postsegregational 96.4 0.0023 7.7E-08 53.9 3.7 22 20-41 34-55 (287)
447 2wwf_A Thymidilate kinase, put 96.3 0.0026 8.8E-08 50.6 3.9 23 20-42 11-33 (212)
448 1q3t_A Cytidylate kinase; nucl 96.3 0.0026 8.9E-08 51.8 3.7 22 20-41 17-38 (236)
449 1fnn_A CDC6P, cell division co 96.3 0.017 5.7E-07 50.3 9.2 23 21-43 46-68 (389)
450 1d2n_A N-ethylmaleimide-sensit 96.3 0.017 5.8E-07 47.9 8.8 24 19-42 64-87 (272)
451 3r20_A Cytidylate kinase; stru 96.3 0.0023 8E-08 52.1 3.4 22 20-41 10-31 (233)
452 2p5t_B PEZT; postsegregational 96.3 0.0018 6.1E-08 53.5 2.7 23 20-42 33-55 (253)
453 3ice_A Transcription terminati 96.3 0.0021 7.2E-08 56.1 3.0 32 9-42 166-197 (422)
454 2dr3_A UPF0273 protein PH0284; 96.3 0.0018 6.3E-08 52.7 2.6 28 11-40 17-44 (247)
455 2bwj_A Adenylate kinase 5; pho 96.3 0.0025 8.6E-08 50.1 3.3 23 20-42 13-35 (199)
456 3tlx_A Adenylate kinase 2; str 96.2 0.0029 9.8E-08 51.9 3.6 22 20-41 30-51 (243)
457 1zd8_A GTP:AMP phosphotransfer 96.2 0.0026 8.7E-08 51.5 3.3 22 20-41 8-29 (227)
458 2pt5_A Shikimate kinase, SK; a 96.2 0.0027 9.4E-08 48.5 3.3 21 21-41 2-22 (168)
459 1gtv_A TMK, thymidylate kinase 96.2 0.0011 3.7E-08 52.9 0.9 23 21-43 2-24 (214)
460 2iyv_A Shikimate kinase, SK; t 96.2 0.0024 8.2E-08 49.7 2.8 22 20-41 3-24 (184)
461 1zak_A Adenylate kinase; ATP:A 96.2 0.0026 8.8E-08 51.2 3.0 23 20-42 6-28 (222)
462 2pbr_A DTMP kinase, thymidylat 96.2 0.0031 1.1E-07 49.3 3.3 21 21-41 2-22 (195)
463 2z0h_A DTMP kinase, thymidylat 96.1 0.0028 9.6E-08 49.7 3.0 22 21-42 2-23 (197)
464 1e4v_A Adenylate kinase; trans 96.1 0.0029 1E-07 50.6 3.2 21 21-41 2-22 (214)
465 1tf7_A KAIC; homohexamer, hexa 96.1 0.002 6.8E-08 59.1 2.4 32 11-44 275-306 (525)
466 1uj2_A Uridine-cytidine kinase 96.1 0.0034 1.2E-07 51.6 3.6 23 19-41 22-44 (252)
467 1e6c_A Shikimate kinase; phosp 96.1 0.0028 9.4E-08 48.7 2.8 22 20-41 3-24 (173)
468 3cwq_A Para family chromosome 96.1 0.022 7.6E-07 45.3 8.2 77 68-162 67-146 (209)
469 2grj_A Dephospho-COA kinase; T 96.1 0.0038 1.3E-07 49.3 3.4 23 19-41 12-34 (192)
470 4ad8_A DNA repair protein RECN 96.1 0.0012 4.2E-08 60.4 0.7 31 7-40 51-81 (517)
471 2f6r_A COA synthase, bifunctio 96.1 0.0045 1.5E-07 51.9 4.1 23 18-40 74-96 (281)
472 3k1j_A LON protease, ATP-depen 96.1 0.00096 3.3E-08 62.3 -0.1 37 6-44 49-85 (604)
473 2vli_A Antibiotic resistance p 96.0 0.0028 9.5E-08 49.1 2.4 22 20-41 6-27 (183)
474 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.05 1.7E-06 46.4 10.5 24 20-43 46-69 (322)
475 2xb4_A Adenylate kinase; ATP-b 96.0 0.0039 1.3E-07 50.3 3.3 21 21-41 2-22 (223)
476 1zuh_A Shikimate kinase; alpha 96.0 0.0041 1.4E-07 47.5 3.3 23 19-41 7-29 (168)
477 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0046 1.6E-07 51.2 3.6 22 20-41 5-26 (260)
478 3u61_B DNA polymerase accessor 95.9 0.076 2.6E-06 45.0 11.3 22 21-42 50-71 (324)
479 1jbk_A CLPB protein; beta barr 95.9 0.0053 1.8E-07 47.4 3.5 24 20-43 44-67 (195)
480 1jr3_A DNA polymerase III subu 95.9 0.0055 1.9E-07 53.1 3.9 24 20-43 39-62 (373)
481 2w58_A DNAI, primosome compone 95.9 0.0051 1.7E-07 48.6 3.4 24 20-43 55-78 (202)
482 3sr0_A Adenylate kinase; phosp 95.9 0.0049 1.7E-07 49.2 3.3 23 21-43 2-24 (206)
483 3cf0_A Transitional endoplasmi 95.9 0.0053 1.8E-07 51.9 3.6 24 20-43 50-73 (301)
484 2v1u_A Cell division control p 95.9 0.017 5.7E-07 50.1 6.9 24 20-43 45-68 (387)
485 3zvl_A Bifunctional polynucleo 95.9 0.0089 3E-07 53.1 5.2 25 18-42 257-281 (416)
486 3be4_A Adenylate kinase; malar 95.8 0.0048 1.7E-07 49.5 3.1 22 20-41 6-27 (217)
487 3ake_A Cytidylate kinase; CMP 95.8 0.0052 1.8E-07 48.6 3.3 23 20-42 3-25 (208)
488 3m6a_A ATP-dependent protease 95.8 0.0034 1.2E-07 57.8 2.3 25 20-44 109-133 (543)
489 2ce7_A Cell division protein F 95.8 0.0032 1.1E-07 56.9 1.9 24 20-43 50-73 (476)
490 3lda_A DNA repair protein RAD5 95.8 0.0044 1.5E-07 54.7 2.8 25 14-40 175-199 (400)
491 1ak2_A Adenylate kinase isoenz 95.7 0.0063 2.2E-07 49.3 3.5 23 20-42 17-39 (233)
492 3bos_A Putative DNA replicatio 95.7 0.0068 2.3E-07 48.9 3.6 24 20-43 53-76 (242)
493 3umf_A Adenylate kinase; rossm 95.7 0.0071 2.4E-07 48.7 3.7 24 20-43 30-53 (217)
494 4ag6_A VIRB4 ATPase, type IV s 95.7 0.0054 1.8E-07 53.9 3.2 24 20-43 36-59 (392)
495 1ypw_A Transitional endoplasmi 95.7 0.0053 1.8E-07 59.2 3.3 29 13-43 234-262 (806)
496 3te6_A Regulatory protein SIR3 95.6 0.049 1.7E-06 46.4 8.8 24 20-43 46-69 (318)
497 1u0l_A Probable GTPase ENGC; p 95.6 0.033 1.1E-06 47.1 7.6 66 69-152 63-130 (301)
498 3a8t_A Adenylate isopentenyltr 95.6 0.0093 3.2E-07 51.1 4.2 25 20-44 41-65 (339)
499 3crm_A TRNA delta(2)-isopenten 95.6 0.0072 2.5E-07 51.6 3.5 24 20-43 6-29 (323)
500 3d3q_A TRNA delta(2)-isopenten 95.6 0.0071 2.4E-07 52.0 3.4 23 20-42 8-30 (340)
No 1
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.92 E-value=7.9e-24 Score=177.16 Aligned_cols=133 Identities=35% Similarity=0.555 Sum_probs=101.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc-HHHHHHHHH
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-EFVGKEIVK 95 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~ 95 (285)
....+|+|+|++|+|||||+|+|+|...+.......++|..+......+ .+..++|+||||+.++.... ......+..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 3458999999999999999999999988766555556777777777777 78899999999998654333 334566677
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccc-CeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF-DYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~iil~nk~D~~~ 151 (285)
++..+.+++|++|+|+|++ +++..+...+..+...|+...+ .|+++++||.|...
T Consensus 98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 7766779999999999997 7999999999999998876432 47888899999754
No 2
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.92 E-value=5.1e-24 Score=177.52 Aligned_cols=142 Identities=41% Similarity=0.728 Sum_probs=104.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
....+|+|+|++|+|||||+|+|+|...+..+....++|..+......+ .+..++||||||+.++..........+..+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999999988666555556777777777777 788999999999998877777778889999
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~ 162 (285)
+..+++++|++++|+|++ +++..+..++..+...++.....|+++|+||+|.... ..+.+++.
T Consensus 106 ~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~ 168 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLR 168 (239)
T ss_dssp HHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------
T ss_pred HHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHH
Confidence 988889999999999997 7777888888888887776555689999999998866 55665554
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=1.4e-21 Score=164.74 Aligned_cols=133 Identities=33% Similarity=0.586 Sum_probs=107.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
...+|+|+|++|+|||||+|.|+|...+.....+.++|..+......+ .+..+.||||||+.++........+.+..++
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999999887665554444666666666666 7889999999999987766666666777777
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe-CCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n-k~D~~~~ 152 (285)
..+++++|++++|+|++ +++..+...+..+...++.....|+++++| |+|....
T Consensus 100 ~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 77889999999999998 688888888899998887544446777766 9998743
No 4
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.79 E-value=2.7e-18 Score=144.82 Aligned_cols=142 Identities=22% Similarity=0.319 Sum_probs=107.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
...+|+++|++|+|||||+|+|+|........ ..+.|.........+ .+..++|+||||+.++........+.+.+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 34899999999999999999999987532222 233455555555556 7889999999999887665555555566554
Q ss_pred hhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhhh
Q 023214 98 GMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~~ 163 (285)
..+++|++++|++++ .+++..+..++..+...++...+.|+++|+||+|....+...+++++..
T Consensus 113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 245789999998874 3578888899999999988776779999999999865544777777764
No 5
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=4.2e-18 Score=144.24 Aligned_cols=140 Identities=24% Similarity=0.334 Sum_probs=102.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+++|++|+|||||+|+|+|........ ..+.|..+....... .+..++||||||+.++..........+..++
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~- 115 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL- 115 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT-
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh-
Confidence 4899999999999999999999887533222 223344444444444 6788999999999876544444444444432
Q ss_pred hccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214 99 MAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~ 162 (285)
..+++|+++||++++. +++..+..++..+...++...+.|+++|+||+|........+++++.
T Consensus 116 -~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~ 179 (270)
T 1h65_A 116 -LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFS 179 (270)
T ss_dssp -TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHH
T ss_pred -hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHH
Confidence 2457899999988743 68888888999998888876556999999999987653346777765
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.74 E-value=7.3e-17 Score=138.47 Aligned_cols=133 Identities=22% Similarity=0.208 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|+|++|+|||||+|.|+|........ ..++|.......... .+..+.++||||+.++. ..+...+......
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEVYE 82 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHHHH
Confidence 589999999999999999999987532211 122333322233333 67889999999998753 2445556666777
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCChhc-HHHHhh
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET-LEDYLG 162 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~~~~-l~~~l~ 162 (285)
++..+|++++|+|++++++..+...+..+...++ . .|+++++||+|.... .. +.+.+.
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~-~--~p~ilV~NK~Dl~~~--~~~~~~~~~ 141 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVG-K--VPILLVGNKLDAAKY--PEEAMKAYH 141 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT-T--SCEEEEEECGGGCSS--HHHHHHHHH
T ss_pred HHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC-C--CCEEEEEECcccCCc--hHHHHHHHH
Confidence 7899999999999987888887766666655422 2 399999999998765 33 444444
No 7
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.72 E-value=7.8e-17 Score=132.13 Aligned_cols=131 Identities=13% Similarity=0.200 Sum_probs=90.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHHHHH
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGKEIV 94 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~--~~~~~~ 94 (285)
....+|+|+|.+|+|||||+|.|++...........++|....+.......+..+.||||||+.+....... ....+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 344899999999999999999999986321222334556665555554225678999999998765433221 122233
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+......+|++++|+|+.++++..+..++..+... + .|+++|+||+|....
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~-~----~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT-G----KPIHSLLTKCDKLTR 159 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG-C----CCEEEEEECGGGSCH
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc-C----CCEEEEEeccccCCh
Confidence 2333335668999999999878888888777776552 2 289999999998765
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.72 E-value=6.8e-17 Score=139.25 Aligned_cols=124 Identities=20% Similarity=0.337 Sum_probs=93.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
...|+++|++|+|||||+|.|+|...... ....++|.......... . +..++++||||+.++. ........+....
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~~~~~~ 86 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHSMVEIA 86 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHHHHHHH
Confidence 35999999999999999999999875322 22334455544444555 5 7889999999998764 2244566777777
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
..++..+|++++|+|++++.+..+... +..+... . .|+++|+||+|..
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~--~pvilV~NK~Dl~ 135 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---N--KPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---C--CCEEEEEECGGGS
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---C--CCEEEEEECccCC
Confidence 777788999999999987888888766 5555441 2 3899999999987
No 9
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.70 E-value=9.2e-16 Score=122.93 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=79.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGKEIVK 95 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~--~~~~~~~ 95 (285)
...+|+|+|++|+|||||+|.|++...........+.|.....+. . +..+.++||||+.++...... ....+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I--NDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E--TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E--CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 348999999999999999999998763222222233444433322 2 447999999998876443221 1122222
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+......+|++++|+|+.++.+..+...+.++... . .|+++|+||+|....
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~--~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY---G--IPVIVIATKADKIPK 149 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSCG
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccCCh
Confidence 222223456999999999878888887666666542 2 289999999998765
No 10
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.69 E-value=5.4e-16 Score=131.50 Aligned_cols=131 Identities=22% Similarity=0.280 Sum_probs=78.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC----CCCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCCcH-
Q 023214 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS----SSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSE- 87 (285)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~----~~~~t~~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~~~- 87 (285)
.|...+|+|+|.+|+|||||+|+|++...+..... ....|+.......... .+ ..++|+||||+.++.....
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 34458999999999999999999999887655421 0122222223333221 23 3799999999976533221
Q ss_pred --HHHHHH----HHHHhh---------ccCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 88 --FVGKEI----VKCIGM---------AKDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 88 --~~~~~~----~~~~~~---------~~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.+...+ ..++.. ....+|+++|+++. +.++...+...+..+.. . .|+++|+||+|...
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~--~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLT 158 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----T--SCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----c--CCEEEEEeccCCCC
Confidence 122111 222221 12247899999976 44688888777766654 2 29999999999876
Q ss_pred C
Q 023214 152 D 152 (285)
Q Consensus 152 ~ 152 (285)
.
T Consensus 159 ~ 159 (274)
T 3t5d_A 159 P 159 (274)
T ss_dssp H
T ss_pred H
Confidence 5
No 11
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.68 E-value=4.1e-16 Score=122.92 Aligned_cols=124 Identities=23% Similarity=0.234 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH-HHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK-EIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~~~~~ 98 (285)
.+|+|+|++|+|||||+|.|++....... ...+.|.......+.+ .+..+.++||||+..... .... .+... .
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~-~ 78 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASD---EVERIGIERA-W 78 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSS---HHHHHHHHHH-H
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECCCcccchh---HHHHHHHHHH-H
Confidence 79999999999999999999987642111 1223344333344555 677899999999975421 1111 12222 2
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.++..+|++++|+|++++.+.....++..+....... .|+++|.||+|+..
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITG 129 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHC
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCc
Confidence 3356789999999997666655666666666654323 38999999999753
No 12
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.65 E-value=1.7e-15 Score=117.31 Aligned_cols=122 Identities=27% Similarity=0.293 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
++|+++|++|+|||||+|.+++...... ....+.+.......... .+..+.++||||....... ...+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV-ADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDKW----EKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSSC----CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeec-cCCCCceecceEEEEEe-CCceEEEEECCCCCCccch----HHHHHHHHHH
Confidence 6899999999999999999998763211 11223444444455555 6778999999998864321 2223333444
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+|+.++++..+......+... + .|+++|.||+|....
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~----~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-G----KPVILVATKVDDPKH 123 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-T----CCEEEEEECCCSGGG
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-C----CCEEEEEECcccccc
Confidence 57788999999999877888776666666552 2 289999999998654
No 13
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.65 E-value=8.4e-15 Score=117.04 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=84.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVK 95 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~ 95 (285)
...+|+++|++|+|||||+|.|++.... ......+.|....... .+..+.++||||+........ .....+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 3479999999999999999999988732 2222233444332221 255789999999875433221 11223333
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+......+|++++|+|+..+.+..+...+.++... + .|+++|+||+|....
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-N----IPFTIVLTKMDKVKM 148 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCG
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCh
Confidence 333334667999999999878888777777776654 2 289999999998755
No 14
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.64 E-value=3.5e-15 Score=117.62 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=81.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||+|.|++........ .+.+.........+ .+..+.++||||...+.... ..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~-----------~~ 74 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMR-----------AR 74 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSC-----------CS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHH-----------HH
Confidence 799999999999999999999876533221 22333333444555 67889999999987654322 24
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+|++++........+..+. ... .|+++|+||+|....
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~~~--~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAK---AAN--VPIIVAINKMDKPEA 122 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHG---GGS--CCEEEEEETTTSSCS
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHH---hCC--CCEEEEEECccCCcC
Confidence 467889999999997676666655554432 222 389999999998764
No 15
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=9.6e-16 Score=136.13 Aligned_cols=138 Identities=15% Similarity=0.192 Sum_probs=78.9
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC--CCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCC
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--SSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDF 82 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~--~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~ 82 (285)
++++++.+..|..++++|+|+||+|||||+|+|+|......... ..+.+.....+.... .+ ..++++|+||+...
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-SNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-Cccccccchhhhhhhhhc
Confidence 77899999999555599999999999999999999853211111 112222211111111 12 36899999999864
Q ss_pred CCCcHH--------HHHHHHHHHhhc---------cCC--ccE-EEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEE
Q 023214 83 SAGSEF--------VGKEIVKCIGMA---------KDG--IHA-VLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142 (285)
Q Consensus 83 ~~~~~~--------~~~~~~~~~~~~---------~~~--~~~-~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ii 142 (285)
. .... +...+..++... .+. +|+ +++++|++++++..+...+..+. ..+ |+|+
T Consensus 109 ~-~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~~~--~vI~ 181 (427)
T 2qag_B 109 I-NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----SKV--NIIP 181 (427)
T ss_dssp C-CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----SCS--EEEE
T ss_pred c-ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----hCC--CEEE
Confidence 2 2111 112222222211 112 345 44566777788888865555543 233 9999
Q ss_pred EEeCCCCCCC
Q 023214 143 VFTGGDELED 152 (285)
Q Consensus 143 l~nk~D~~~~ 152 (285)
|+||+|.++.
T Consensus 182 Vi~KtD~Lt~ 191 (427)
T 2qag_B 182 IIAKADAISK 191 (427)
T ss_dssp EESCGGGSCH
T ss_pred EEcchhccch
Confidence 9999999876
No 16
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.63 E-value=4.2e-15 Score=130.89 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC--cc------------------------------------------
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG--VT------------------------------------------ 55 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~--~t------------------------------------------ 55 (285)
++|+|||++|+|||||+|+|+|...++.+..... ++
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 5999999999999999999999775444322110 00
Q ss_pred --------eeEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHH
Q 023214 56 --------STCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 125 (285)
Q Consensus 56 --------~~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l 125 (285)
...-...+.......++||||||+..+.. ........+...+..++..+|++++|+++. ........++
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~~~ 193 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSDAI 193 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCHHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHHHH
Confidence 00000111111245699999999987532 122344556666666678899999998764 2222223445
Q ss_pred HHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 126 HSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 126 ~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++...... ..|+++|+||+|....
T Consensus 194 ~l~~~~~~~--~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 194 KISREVDPS--GDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHSCTT--CTTEEEEEECGGGCCT
T ss_pred HHHHHhccc--CCCEEEEEeCCccCCC
Confidence 555544222 2389999999998864
No 17
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.62 E-value=1.9e-15 Score=129.77 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC-CCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~~~~~~ 98 (285)
..|+|+|++|+|||||+|.|+|....... ...+.|.........+ .+..++++||||+. .+ .......+.....
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~~ 83 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKAAS 83 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHHHH
Confidence 58999999999999999999998753221 1223343333333444 67789999999986 21 1122223333345
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.++..+|++++|+|+.+ ++..+...+..+.. .. .|+++++||+|...
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~---~~--~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE---GK--APVILAVNKVDNVQ 130 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS---SS--SCEEEEEESTTTCC
T ss_pred HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh---cC--CCEEEEEECcccCc
Confidence 66788999999999976 99888766655442 12 28999999999876
No 18
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.62 E-value=3.5e-15 Score=134.70 Aligned_cols=122 Identities=22% Similarity=0.285 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
++|+|||.+|+|||||+|.|+|...... ....++|....+....+ .+..+.||||||+.... .......+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 5899999999999999999998864222 22356777777777888 78899999999987431 11122344455556
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
++..+|++++|+|+..+++..+.....++... + .|+++|+||+|..
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-~----~p~ilv~NK~D~~ 123 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENL 123 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSH
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCc
Confidence 67889999999999878998887666666553 2 2899999999975
No 19
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.62 E-value=7.4e-15 Score=115.85 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=77.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
...+|+++|++|+|||||+|.|++..... ....+.+.........+ .+ ..+.++||||........
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~--------- 75 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTIT--------- 75 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCC---------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhH---------
Confidence 44899999999999999999999876532 22233444444444444 44 568999999976543322
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|++++.+... ..++..+..... . .|+++|+||+|...
T Consensus 76 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 76 --STYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-D--VCRILVGNKNDDPE 127 (181)
T ss_dssp --GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-T--SEEEEEEECTTCGG
T ss_pred --HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCCCch
Confidence 234678899999999975433333 234444544432 2 39999999999764
No 20
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.61 E-value=9.7e-15 Score=120.25 Aligned_cols=126 Identities=18% Similarity=0.175 Sum_probs=77.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+|+|++|+|||||+|.|++...... ...+.|.......... .+..+.|+||||+.+.......... . ..+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~-~-~~~~ 103 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIE-M-TTIT 103 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHH-H-HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHH-H-HHHH
Confidence 48999999999999999999998874322 1223444444445555 5678999999999754221111100 1 1111
Q ss_pred hccCCccEEEEEEeCCCCCCHH---HHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQE---EEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+..+|++++|+|++++.+.. ...++..+...+. ..|+++|+||+|....
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC-
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCc
Confidence 2246779999999997664432 2333443433211 2389999999998754
No 21
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.61 E-value=8.2e-15 Score=122.86 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~ 97 (285)
++|+|+|.+|+|||||+|.|+|.....+. ..++|+........+ .+..+.|+||||+.++..... .....+...+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~--~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGN--WPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEE--CTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccC--CCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 58999999999999999999998743332 346677766777776 678999999999987643210 1222233322
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.. ...+|++++|+|+++ . ...+.+........ .|+++++||+|...
T Consensus 79 ~~-~~~~d~vi~VvDas~-~----~~~~~l~~~l~~~~--~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 79 VI-DLEYDCIINVIDACH-L----ERHLYLTSQLFELG--KPVVVALNMMDIAE 124 (256)
T ss_dssp HH-HSCCSEEEEEEEGGG-H----HHHHHHHHHHTTSC--SCEEEEEECHHHHH
T ss_pred Hh-hCCCCEEEEEeeCCC-c----hhHHHHHHHHHHcC--CCEEEEEEChhcCC
Confidence 11 267899999999973 1 12222333332222 39999999999763
No 22
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.59 E-value=9.1e-15 Score=115.49 Aligned_cols=119 Identities=22% Similarity=0.221 Sum_probs=76.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..+|+++|++|+|||||+|.+++...........+.+.. .....+. ....+.++||||...+... .
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 78 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFF--SQTLAVNDATVKFEIWDTAGQERYHSL-----------A 78 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEE--EEEEEETTEEEEEEEEECCCSGGGGGG-----------T
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEE--EEEEEECCEEEEEEEEeCCCChhhhhh-----------h
Confidence 379999999999999999999987653322222222222 2223331 1346899999996543211 1
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+..+|++++|+|+.++.+... ..++..+....... .|+++|+||+|....
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDA 132 (181)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCccccc
Confidence 223567899999999975544222 44555555543323 389999999998643
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.59 E-value=4.6e-15 Score=115.84 Aligned_cols=117 Identities=18% Similarity=0.142 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|++|+|||||+|.+++...........+.+.. .....+. ....+.++||||+..+.. ...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dt~G~~~~~~-----------~~~ 73 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFM--TKTVQYQNELHKFLIWDTAGLERFRA-----------LAP 73 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE--EEEEEETTEEEEEEEEEECCSGGGGG-----------GTH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEE--EEEEEECCeEEEEEEEcCCCchhhhc-----------ccH
Confidence 79999999999999999999987743222222222222 2223331 135689999999854321 111
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+..+|++++|+|++++.+... ..++..+.....+. .|+++|.||+|...
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 74 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTD 125 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGG
T ss_pred hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCcccc
Confidence 23567899999999975544333 34455555542333 38999999999864
No 24
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=3.2e-15 Score=116.67 Aligned_cols=118 Identities=20% Similarity=0.218 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+++|++|+|||||+|.+++.......... .+........... ....+.++||||...+.. ...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----------~~~ 70 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPT--IGAAFLTQRVTINEHTVKFEIWDTAGQERFAS-----------LAP 70 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC--SSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-----------GHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--cceeEEEEEEEECCEEEEEEEEECCCChhhhh-----------hhh
Confidence 69999999999999999999977643222222 2222222333331 134689999999654211 122
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|++++.+... ..++..+........ |+++++||+|....
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI--IIALVGNKIDXLQE 123 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGS
T ss_pred hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCCcccc
Confidence 33567899999999975533333 234445554433333 89999999998643
No 25
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.59 E-value=8e-16 Score=139.56 Aligned_cols=123 Identities=23% Similarity=0.184 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
++|+|+|++|+|||||+|.|+|...... ....++|....+....+ .+..+.|+||||+... .......+......
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQIRQQAEI 98 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHHHHHHHh
Confidence 6999999999999999999998764322 22346677666666666 6788999999998732 22234556666666
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++..+|++++|+|+..+++..+...+.++... ..|+++++||+|....
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~-----~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAADEEVAKILYRT-----KKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC-----CSCEEEEEECC-----
T ss_pred hHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc-----CCCEEEEEECccchhh
Confidence 67788999999999878999888777766541 2389999999997643
No 26
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.58 E-value=1.4e-14 Score=115.63 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=76.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..+|+|+|++|+|||||+|.|++...........+.+ ......... ....+.++||||...+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 88 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTVYRHDKRIKLQIWDTAGQERYRTIT----------- 88 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCE--EEEEEEEETTEEEEEEEEECCSCCSSCCSG-----------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEE--EEEEEEEECCeEEEEEEEeCCCcHHHhhhH-----------
Confidence 4799999999999999999999876432222222222 222223331 13468999999987653322
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|++++.+... ..++..+....... .|+++|+||+|...
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLED 141 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccccc
Confidence 244678999999999974433322 24445555443222 39999999999764
No 27
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.58 E-value=3.2e-14 Score=113.82 Aligned_cols=124 Identities=10% Similarity=0.010 Sum_probs=76.0
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 86 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 86 (285)
.+++++..+. .+|+++|++|+|||||++.+++..... . .+|.........+ .+..+.++||||...+...
T Consensus 14 l~~~~~~~~~---~ki~~vG~~~vGKSsli~~l~~~~~~~--~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~- 83 (190)
T 1m2o_B 14 LASLGLWNKH---GKLLFLGLDNAGKTTLLHMLKNDRLAT--L---QPTWHPTSEELAI-GNIKFTTFDLGGHIQARRL- 83 (190)
T ss_dssp -------------CEEEEEESTTSSHHHHHHHHHHSCCCC--C---CCCCSCEEEEEEE-TTEEEEEEECCCSGGGTTS-
T ss_pred HHHhhccCCc---cEEEEECCCCCCHHHHHHHHhcCCCCc--c---ccCCCCCeEEEEE-CCEEEEEEECCCCHHHHHH-
Confidence 3455555444 599999999999999999999766321 1 1222233445555 6788999999998654321
Q ss_pred HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++..+|++++|+|++++-+.... .++..+.... .....|++++.||+|...
T Consensus 84 ----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 84 ----------WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp ----------GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTT
T ss_pred ----------HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcC
Confidence 12446789999999999755443332 2333332211 112248999999999875
No 28
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.58 E-value=1.6e-14 Score=116.85 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=78.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+|+|++|+|||||+|.|++....... ..+.+.........+ .+ ..+.|+||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~---------- 74 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDY--ISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTIT---------- 74 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTC--CCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCC----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHH----------
Confidence 379999999999999999999987643221 122222333333444 33 369999999987654322
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|++++.+... ..++..+....... .|+++|+||+|....
T Consensus 75 -~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 75 -SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDK 128 (206)
T ss_dssp -GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTT
T ss_pred -HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence 234678899999999975444333 23444554443333 389999999998753
No 29
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.58 E-value=2.8e-14 Score=114.18 Aligned_cols=119 Identities=20% Similarity=0.217 Sum_probs=79.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
...+|+|+|++|+|||||+|.|++....... ..+.+.........+ .+ ..+.++||||...+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------- 81 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI---------- 81 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTT----------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhh----------
Confidence 3479999999999999999999976643221 223344444444444 44 46899999997643221
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++..+|++++|+|+.++.+... ..++..+........ |+++|+||+|....
T Consensus 82 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 82 -TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV--NKLLVGNKCDLTTK 136 (196)
T ss_dssp -HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCTTT
T ss_pred -HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECcccccc
Confidence 1233577899999999975433222 345555555443333 99999999998654
No 30
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.58 E-value=5.6e-14 Score=111.62 Aligned_cols=117 Identities=14% Similarity=0.095 Sum_probs=77.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
...+|+++|++|+|||||+|.+++.. +.. . .+|.........+ .+..+.++||||... +....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~-~---~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~~ 79 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDT-I---SPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSYW 79 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSS-C---CCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCc-c---cccCccceEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence 34899999999999999999999876 222 1 2233333445555 678899999999742 12223
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+..+|++++|+|++++.+.... .++..+..... ....|+++|+||+|....
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 80 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA 134 (186)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC
Confidence 4557889999999999755444332 23333322110 112499999999998764
No 31
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.58 E-value=9.5e-15 Score=114.13 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=73.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||+|.+++......... +.+.......... .+ ..+.++||||...+. ..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~ 71 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHIT--TLGASFLTKKLNI-GGKRVNLAIWDTAGQERFH-----------AL 71 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCC--CCSCEEEEEEEES-SSCEEEEEEEECCCC-----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCC--ccceEEEEEEEEE-CCEEEEEEEEECCCcHhhh-----------hh
Confidence 37999999999999999999997764322111 2222222223333 33 358899999975432 12
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
....+..+|++++|+|+.++.+... ..++..+........ |+++++||+|...
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~ 125 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI--CLCIVGNKIDLEK 125 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGS--EEEEEEECGGGGG
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--eEEEEEECccccc
Confidence 2345778999999999975433332 344555555443333 9999999999864
No 32
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.58 E-value=1.5e-14 Score=122.50 Aligned_cols=121 Identities=21% Similarity=0.214 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~ 97 (285)
.+|+++|.+|+|||||+|.|+|.....+ ...++|+........+ .+..+.++||||+.++.... ......+.+.+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~--~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEE--ECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 7999999999999999999999874322 2346677766677776 67889999999998765211 11222333322
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
. ....+|++++|+|+++ . .....++..+... + .|+++++||+|...
T Consensus 81 ~-~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~-~----~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 81 I-LSGDADLLINVVDASN-L-ERNLYLTLQLLEL-G----IPCIVALNMLDIAE 126 (274)
T ss_dssp H-HHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH-T----CCEEEEEECHHHHH
T ss_pred H-hhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc-C----CCEEEEEECccchh
Confidence 1 2368899999999873 2 2233344444443 2 29999999999753
No 33
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.57 E-value=8.8e-15 Score=114.23 Aligned_cols=117 Identities=14% Similarity=0.198 Sum_probs=74.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||+|.+++........ .+.+.........+ .+ ..+.++||||...+.....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~--------- 70 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITT--------- 70 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCH---------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhHH---------
Confidence 3799999999999999999999776422211 22222222333444 33 4689999999765433221
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+..+|++++|+|++++.+... ..++..+........ |+++++||+|...
T Consensus 71 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~ 122 (170)
T 1g16_A 71 --AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEA--QLLLVGNKSDMET 122 (170)
T ss_dssp --HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCTT
T ss_pred --HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccCCc
Confidence 23567899999999974433322 345555555443333 9999999999843
No 34
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.57 E-value=7.3e-14 Score=109.14 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||+|.+++..... ..+|.........+ .+..+.++||||...+.. ....
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~-----------~~~~ 70 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTY-KNLKFQVWDLGGLTSIRP-----------YWRC 70 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEEE-TTEEEEEEEECCCGGGGG-----------GGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEEEE-CCEEEEEEECCCChhhhH-----------HHHH
Confidence 799999999999999999998765421 12233333445555 578899999999764321 1234
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++..+|++++|+|++++-+.... .++..+..... ....|+++|+||+|....
T Consensus 71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC
Confidence 57789999999999766544332 22222222110 122499999999998764
No 35
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.57 E-value=5.6e-14 Score=121.26 Aligned_cols=129 Identities=15% Similarity=0.166 Sum_probs=75.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCC--CCc----ceeE----------------------------------
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS--SGV----TSTC---------------------------------- 58 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~--~~~----t~~~---------------------------------- 58 (285)
.++|+|+|++|+|||||+|+|+|...++.+... ..+ +...
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 379999999999999999999998764332210 000 0000
Q ss_pred -----------------EEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhccCCccEEEEEEeC-CCCCC
Q 023214 59 -----------------EMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRFS 118 (285)
Q Consensus 59 -----------------~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~v~~~-~~~~~ 118 (285)
....+....+..++||||||+..... ........+......++..+|++++|+++ +..++
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~ 183 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence 00001222346799999999975221 01122334445555566788999999986 43444
Q ss_pred HHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 119 QEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 119 ~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+ ...+..+.. ...|+++|+||+|....
T Consensus 184 ~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 184 NSDALQLAKEVDP-----EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp TCSHHHHHHHHCS-----SCSSEEEEEECTTSSCS
T ss_pred hhHHHHHHHHhCC-----CCCcEEEEEcCcccCCc
Confidence 333 233333321 12389999999998865
No 36
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.57 E-value=7.8e-15 Score=114.43 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=74.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..+|+++|++|+|||||+|.+++...........+.+. ........ .+..+.++||||...+.. ..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~~~-----------~~ 72 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVCLDDTTVKFEIWDTAGQERYHS-----------LA 72 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGGGGG-----------GH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEECCEEEEEEEEeCCCcHHhhh-----------hh
Confidence 37999999999999999999997654322112222222 22223331 145689999999754311 11
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...+..+|++++|+|++++.+... ..++..+.....+.. |++++.||+|...
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI--VIALSGNKADLAN 125 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGG
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccCcc
Confidence 233567899999999975533322 344445554433333 8999999999754
No 37
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.56 E-value=2.9e-14 Score=120.61 Aligned_cols=119 Identities=21% Similarity=0.233 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|+|++|+|||||+|.|+|.... .+ ...++|.........+ .+..+.++||||+.++...... ..+...+ .
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~-~ 77 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQH-VG-NWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID--ELIARNF-I 77 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEE-EE-ECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH--HHHHHHH-H
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcc-cC-CCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH--HHHHHHh-h
Confidence 79999999999999999999998752 22 2345666666666766 7788999999999876543321 2222222 1
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
....+|++++|+|+++. .....++..+... +. .|+++++||+|..
T Consensus 78 ~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 78 LDGNADVIVDIVDSTCL--MRNLFLTLELFEM-EV---KNIILVLNKFDLL 122 (271)
T ss_dssp HTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT-TC---CSEEEEEECHHHH
T ss_pred hccCCcEEEEEecCCcc--hhhHHHHHHHHhc-CC---CCEEEEEEChhcC
Confidence 23678999999998732 2222333333332 21 3899999999954
No 38
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.56 E-value=3.6e-15 Score=134.52 Aligned_cols=122 Identities=23% Similarity=0.196 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
++|+|+|++|+|||||+|.|+|...... ....++|....+....+ .+..+.|+||||+.... ......+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 6899999999999999999998764221 22346676666666666 67889999999987321 1144555555556
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
++..+|++++|+|+.++++..+......+.. ...|+++++||+|...
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 125 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC--
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCcc
Confidence 6778899999999987889887665555542 1239999999999764
No 39
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.56 E-value=4.9e-14 Score=113.08 Aligned_cols=121 Identities=14% Similarity=0.084 Sum_probs=77.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
....+|+|+|++|+|||||++.|++......... .|.......+.. .+..+.++||||...+.. .
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~---~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 79 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT---ATVGYNVETFEK-GRVAFTVFDMGGAKKFRG-----------L 79 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCC---CCSSEEEEEEEE-TTEEEEEEEECCSGGGGG-----------G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccc---cccceeEEEEEe-CCEEEEEEECCCCHhHHH-----------H
Confidence 3448999999999999999999998775331211 222333444444 678899999999864321 2
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc------cccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGK------KIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~------~~~~~~iil~nk~D~~~~ 152 (285)
...++..+|++++|+|+.++-+.... .++..+...... ....|+++|+||+|....
T Consensus 80 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 80 WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 23457889999999999755443332 333333221000 012399999999998765
No 40
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.56 E-value=1.6e-14 Score=116.44 Aligned_cols=125 Identities=14% Similarity=0.064 Sum_probs=75.7
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (285)
+.+++++.... .+|+++|++|+|||||++.+++...... . +|.........+ .+..+.++||||...+..
T Consensus 15 ~l~~~~~~~~~---~ki~lvG~~~vGKSsLi~~l~~~~~~~~--~---~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~- 84 (198)
T 1f6b_A 15 VLQFLGLYKKT---GKLVFLGLDNAGKTTLLHMLKDDRLGQH--V---PTLHPTSEELTI-AGMTFTTFDLGGHIQARR- 84 (198)
T ss_dssp HHHHHTCTTCC---EEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CC-
T ss_pred HHHHhhccCCC---cEEEEECCCCCCHHHHHHHHhcCCCCcc--C---CCCCceeEEEEE-CCEEEEEEECCCcHhhHH-
Confidence 34445555444 5999999999999999999998663211 1 122222344555 568899999999765432
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
....++..+|++++|+|+.++-+... ..++..+.... .....|+++|.||+|...
T Consensus 85 ----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 85 ----------VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPE 140 (198)
T ss_dssp ----------GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTT
T ss_pred ----------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccc
Confidence 12234678899999999975544333 22333332211 112248999999999864
No 41
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.56 E-value=3.8e-14 Score=113.11 Aligned_cols=120 Identities=14% Similarity=0.055 Sum_probs=78.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
...+|+++|++|+|||||+|.|++...+.... ..|.........+ .+..+.++||||...+.. ..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-----------~~ 84 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFKS-SSLSFTVFDMSGQGRYRN-----------LW 84 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEEC-SSCEEEEEEECCSTTTGG-----------GG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEEE-CCEEEEEEECCCCHHHHH-----------HH
Confidence 34899999999999999999999877333322 2233344455555 578899999999765421 12
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|....
T Consensus 85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 244677899999999974432222 1333333332110 022499999999998754
No 42
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.56 E-value=5.6e-15 Score=133.29 Aligned_cols=127 Identities=20% Similarity=0.196 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+++|++|+|||||+|.|+|....... ...++|.........+ .+..+.||||||+.+.....+.+.........
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 379999999999999999999998743221 1234555554555666 67889999999986543211110000000011
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|++++.+..+..++..+... + .|+++++||+|....
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDK 301 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCC
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-C----CcEEEEEECccCCCc
Confidence 234567999999999888998888776666542 2 289999999998765
No 43
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.56 E-value=8.6e-14 Score=116.78 Aligned_cols=118 Identities=23% Similarity=0.273 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|+|++|+|||||+|.|+|....... ..++|+......... .+..+.|+||||..++..... ...+...+..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~--~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~~~ 80 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVAN--WPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDYLL 80 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHHHh
Confidence 78999999999999999999998754322 236677666666666 678899999999987654321 1222222211
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
...+|++++|+|+++ +.. ...++..+. ... .|+++++||+|..
T Consensus 81 -~~~~d~ii~V~D~t~-~~~-~~~~~~~l~---~~~--~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 81 -KGDADLVILVADSVN-PEQ-SLYLLLEIL---EME--KKVILAMTAIDEA 123 (258)
T ss_dssp -HSCCSEEEEEEETTS-CHH-HHHHHHHHH---TTT--CCEEEEEECHHHH
T ss_pred -hcCCCEEEEEeCCCc-hhh-HHHHHHHHH---hcC--CCEEEEEECcCCC
Confidence 157899999999973 321 222333332 222 3999999999975
No 44
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=116.69 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=73.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..+|+|+|++|+|||||+|.|++...........+ ........... .+..+.++||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------- 91 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG--VEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT----------- 91 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSS--EEEEEEEEEETTEEEEEEEEEESCCCTTCTTH-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEeCCCchhhhhhh-----------
Confidence 47999999999999999999998764322221112 22222222221 23568999999987643211
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...+..+|++++|+|+.++.+... ..++..+...... ..|+++|+||+|...
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQ 144 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGG
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCccc
Confidence 123567899999999974433222 2334444332222 248999999999864
No 45
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=2.3e-14 Score=127.65 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=69.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CCcceeEEEEEEEe---eCCceEEEEeCCCCCCCCCCc---HH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGS---EF 88 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~----~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~---~~ 88 (285)
..+|+|+|+||+|||||+|+|+|...+..+... ...|.......... .....++++||||+....... ..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 367899999999999999999998764333110 11122211111111 112368999999998642111 11
Q ss_pred HHHHHHHHHh-----------hcc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 89 VGKEIVKCIG-----------MAK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 89 ~~~~~~~~~~-----------~~~--~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+...+...+. ..+ +.+|+++|++.++ +.+++.+..++..+. ..+ |+|+|+||+|....
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v--~iIlVinK~Dll~~ 182 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKV--NIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTS--EEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccC--cEEEEEEcccCccH
Confidence 1111111111 112 3356788888775 578888866665553 223 99999999998764
No 46
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.56 E-value=2.2e-14 Score=115.74 Aligned_cols=118 Identities=12% Similarity=0.125 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
.+|+|+|++|+|||||+|.|++...........+ ........... ....+.++||||...+ .....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~~~ 75 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG--IDFKVKTIYRNDKRIKLQIWDTAGLERY-----------RTITT 75 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCS--EEEEEEEEEETTEEEEEEEEEECCSGGG-----------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc--eeEEEEEEEECCeEEEEEEEECCCchhh-----------cchHH
Confidence 7999999999999999999998774322222222 22222233331 1356899999997532 12234
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|++++.+... ..++..+....... .|+++|+||+|....
T Consensus 76 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 76 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDE 128 (203)
T ss_dssp TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTS
T ss_pred HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcc
Confidence 55678899999999975433222 23444454433223 399999999998653
No 47
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.4e-14 Score=116.06 Aligned_cols=118 Identities=19% Similarity=0.130 Sum_probs=75.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..+|+|+|++|+|||||+|.|++...........+.+... ...... ....+.++||||...+... .
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 89 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMT--KTVPCGNELHKFLIWDTAGQERFHSL-----------A 89 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEE--EEEECSSSEEEEEEEEECCSGGGGGG-----------T
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEE--EEEEeCCEEEEEEEEcCCCchhhHhh-----------h
Confidence 4799999999999999999999876422212222222222 222221 2456999999997543211 1
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|...
T Consensus 90 ~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 90 PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSD 142 (192)
T ss_dssp HHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred HHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence 123567899999999975544333 34455555543223 39999999999863
No 48
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=4.3e-14 Score=111.50 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||+|.+++........ ..+.+.......... .+ ..+.++||||...+. ...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~~~ 77 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFR-----------SVT 77 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEEE-TTEEEEEEEEECCCC------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------HHH
Confidence 799999999999999999999876432211 122222222222333 33 368999999975432 123
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|+.++.+... ..++..+....... .|+++|+||+|....
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 78 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHE 131 (180)
T ss_dssp -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSC
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcc
Confidence 345677899999999975443332 34455555543333 399999999998754
No 49
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.55 E-value=3.6e-14 Score=115.18 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=76.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+|+|++|+|||||+|.|++....... ..+++.........+ .+ ..+.|+||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~---------- 86 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTIT---------- 86 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSS--SCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCC----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHH----------
Confidence 389999999999999999999976643221 122233333334444 44 568999999976543221
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
..++..+|++++|+|+.++.+... ..++..+........ |+++|+||+|..
T Consensus 87 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~ 138 (213)
T 3cph_A 87 -TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEA--QLLLVGNKSDME 138 (213)
T ss_dssp -HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCS--EEEEEEECTTCS
T ss_pred -HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCc
Confidence 123567899999999974433222 345555555443333 999999999984
No 50
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.55 E-value=6.9e-14 Score=109.19 Aligned_cols=118 Identities=18% Similarity=0.289 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||+|.|+|...+... ..+.|.........+ .+..+.++||||...+.... ..+.+...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~~ 78 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYII 78 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHHh
Confidence 68999999999999999999987643321 123344433444455 57789999999998754322 11222222211
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
...+|++++|+|+.+ . .....++..+... . .|+++|+||+|..
T Consensus 79 -~~~~~~~i~v~D~~~-~-~~~~~~~~~~~~~---~--~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 79 -NEKPDLVVNIVDATA-L-ERNLYLTLQLMEM---G--ANLLLALNKMDLA 121 (165)
T ss_dssp -HHCCSEEEEEEETTC-H-HHHHHHHHHHHHT---T--CCEEEEEECHHHH
T ss_pred -cCCCCEEEEEecCCc-h-hHhHHHHHHHHhc---C--CCEEEEEEchHhc
Confidence 126799999999863 2 1122333333331 2 3899999999964
No 51
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.55 E-value=2e-14 Score=112.01 Aligned_cols=117 Identities=21% Similarity=0.152 Sum_probs=74.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..+|+++|++|+|||||+|.|++........ .+.+............ ...+.++||||...+.....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---------- 72 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK--KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITK---------- 72 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSS--CCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCH----------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHH----------
Confidence 3799999999999999999999875422211 1122222223333311 34689999999765432221
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+..+|++++|+|++++.+... ..++..+...... .|+++|+||+|...
T Consensus 73 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 73 -AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLD 123 (168)
T ss_dssp -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGG
T ss_pred -HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECcccCc
Confidence 23567899999999975433222 2344445444322 28999999999764
No 52
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.55 E-value=3.1e-13 Score=128.18 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-ceeEEE--------------------------------------
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-TSTCEM-------------------------------------- 60 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~-t~~~~~-------------------------------------- 60 (285)
.+|+|+|++|+|||||+|+|+|....+.+..+.+. .....+
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l 149 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKL 149 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHH
Confidence 89999999999999999999998865544332221 000000
Q ss_pred -------------EEEEeeC---CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHH
Q 023214 61 -------------QRTVLKD---GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 124 (285)
Q Consensus 61 -------------~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 124 (285)
..+.++. ...++||||||+.++.. .......+++.+|++++|+|++++++..+...
T Consensus 150 ~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~ 221 (695)
T 2j69_A 150 EQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGERRY 221 (695)
T ss_dssp HTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH
T ss_pred hhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHHHH
Confidence 0011100 04699999999875311 11222334567899999999987888887765
Q ss_pred HHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 125 LHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 125 l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+....... ..|+++|+||+|....
T Consensus 222 l~~~l~~~----~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 222 LENYIKGR----GLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHTTTS----CCCEEEEEECGGGGGG
T ss_pred HHHHHHhh----CCCEEEEEECcccccc
Confidence 54221111 2279999999998643
No 53
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.55 E-value=2.2e-14 Score=130.13 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=67.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|+|++|+|||||+|.|++....... ...++|.......+.+ .+..+.|+||||+.++... +..........
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~---ve~~gi~~~~~ 308 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEE---IEHEGIRRSRM 308 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------C
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhH---HHHHHHHHHHh
Confidence 78999999999999999999987532111 1234555555555666 7889999999999764221 11111222345
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++..+|++++|+|++++.+.........+...+.. .|+++|+||+|....
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~---~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHPA---AKFLTVANKLDRAAN 358 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTT---SEEEEEEECTTSCTT
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCC---CCEEEEEECcCCCCc
Confidence 67889999999999877776322222222222232 399999999998765
No 54
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.55 E-value=8.6e-14 Score=109.99 Aligned_cols=117 Identities=20% Similarity=0.209 Sum_probs=73.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEE-EEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
..+|+++|++|+|||||+|.+++.... ....+ |.... ...... .+ ..+.++||||...+.....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~---t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~-------- 72 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV-DSYDP---TIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQ-------- 72 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-SCCCT---TCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCCG--------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCC---CccccEEEEEEE-CCEEEEEEEEeCCCchhhhHHHH--------
Confidence 379999999999999999999965532 22221 11111 222333 44 4578999999886543222
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|+.++-+... ..++..+...+. ....|+++|+||+|....
T Consensus 73 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 73 ---TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp ---GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTT
T ss_pred ---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc
Confidence 34678899999999974433332 233334434332 112389999999997543
No 55
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.55 E-value=3.6e-14 Score=112.75 Aligned_cols=118 Identities=21% Similarity=0.246 Sum_probs=71.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||+|.|++...... ..+ .+.......... .+. .+.++||||...+.....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~--t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~--------- 70 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDE-YDP--TIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRD--------- 70 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCC-CCT--TCCEEEEEEEEE-TTEEEEEEEEECCCC---CTTHH---------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCC-CCC--CchheEEEEEEE-CCcEEEEEEEECCCcHHHHHHHH---------
Confidence 37999999999999999999997664222 111 122222222333 443 377899999775433221
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|+.++-+... ..++..+..... ....|+++|+||+|....
T Consensus 71 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 71 --QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp --HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC
T ss_pred --HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc
Confidence 12345799999999975433333 234444444322 223489999999998744
No 56
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.55 E-value=1.9e-14 Score=113.53 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=70.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
...+|+++|++|+|||||+|.+++......... +.+.........+. ....+.++||||...+. .
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~ 73 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKA--TIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-----------S 73 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCC--ccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-----------h
Confidence 348999999999999999999998764322111 11122222333331 13568999999965421 1
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC--ccccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~--~~~~~~~iil~nk~D~~~ 151 (285)
.....+..+|++++|+|+.++.+... ..++..+..... .....|+++|+||+|...
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 23355778999999999975433322 234444444332 012238999999999753
No 57
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.55 E-value=2.4e-14 Score=114.15 Aligned_cols=120 Identities=17% Similarity=0.132 Sum_probs=75.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
...+|+|+|++|+|||||+|.|++......... +.+.........+ .+ ..+.++||||...+ .. .
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-------~~---~ 85 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEA--TIGVDFRERAVDI-DGERIKIQLWDTAGQERF-------RK---S 85 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCC--CCSCCEEEEEEEE-TTEEEEEEEEECCCSHHH-------HT---T
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--CcceEEEEEEEEE-CCEEEEEEEEECCCchhh-------hh---h
Confidence 347999999999999999999997664322221 2222222333334 33 46899999995421 10 1
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
....++..+|++++|+|++++.+... ..++..+...+. ....|+++|+||+|...
T Consensus 86 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 86 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS 141 (189)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG
T ss_pred hhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 12233567899999999974433322 344555555431 12238999999999864
No 58
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.54 E-value=5.5e-14 Score=111.52 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=76.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||+|.|++...... ...+.+.......... .+ ..+.++||||...+ ...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~~ 75 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDD--SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERF-----------RSV 75 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHH
Confidence 37999999999999999999997764322 1122233333333444 33 47899999996532 123
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|...
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~ 129 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDA 129 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence 4456788999999999975433322 23444444443333 39999999999753
No 59
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.54 E-value=1.3e-14 Score=114.30 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=74.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..+|+++|++|+|||||+|.|++...........+.+.. ....... ....+.++||||...+. . ..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~---~--------~~ 81 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFG--TRIIEVSGQKIKLQIWDTAGQERFR---A--------VT 81 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEE--EEEEEETTEEEEEEEEECTTGGGTC---H--------HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE--EEEEEECCeEEEEEEEECCCChHhh---h--------hH
Confidence 479999999999999999999987643221222222222 2222331 13468999999965431 1 11
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|+.++.+... ..++..+....... .|+++|+||+|...
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEA 134 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence 223456799999999975533332 24444455543333 38999999999864
No 60
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.54 E-value=1.3e-13 Score=110.66 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC-------------------------------
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG------------------------------- 68 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~------------------------------- 68 (285)
.+|+|+|++|+|||||+|.|++........ ..+..........+ .+
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSCEEEEEEEET-TC-------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcC--ccccceeEEEEEEe-cCccccccccccccccccccccccccccccccc
Confidence 899999999999999999999876432111 11112222222222 22
Q ss_pred --------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCe
Q 023214 69 --------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDY 139 (285)
Q Consensus 69 --------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 139 (285)
..+.|+||||...+... ....+..+|++++|+|+.++.+..+ ..++..+....+ .|
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~p 149 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASI-----------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YI 149 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTT-----------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CE
T ss_pred cccCccceeEEEEEECCCcHHHHHH-----------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----Cc
Confidence 67899999997654321 1223567899999999975544333 334445544433 39
Q ss_pred EEEEEeCCC
Q 023214 140 MIVVFTGGD 148 (285)
Q Consensus 140 ~iil~nk~D 148 (285)
+++|+||+|
T Consensus 150 iilv~NK~D 158 (208)
T 3clv_A 150 IILVANKID 158 (208)
T ss_dssp EEEEEECTT
T ss_pred EEEEEECCC
Confidence 999999999
No 61
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.54 E-value=1.4e-13 Score=109.60 Aligned_cols=116 Identities=13% Similarity=0.046 Sum_probs=76.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+++|++|+|||||+|.+++...... .. |.........+ .+..+.++||||...+.... .
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~-----------~ 84 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVVTT-VP----TVGVNLETLQY-KNISFEVWDLGGQTGVRPYW-----------R 84 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCEEE-CS----STTCCEEEEEE-TTEEEEEEEECCSSSSCCCC-----------S
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCc-CC----CCceEEEEEEE-CCEEEEEEECCCCHhHHHHH-----------H
Confidence 48999999999999999999987664321 11 22222344455 57889999999987653321 2
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|++++-+.... .++..+.... .....|+++|+||+|....
T Consensus 85 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 85 CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED-ELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCS-TTTTCEEEEEEECTTSTTC
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh-hcCCCeEEEEEECCCCcCC
Confidence 346789999999999766544332 2222222211 0112499999999998764
No 62
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.54 E-value=5.1e-14 Score=110.46 Aligned_cols=120 Identities=21% Similarity=0.153 Sum_probs=68.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||+|.|++...... ....+.+... ....+ .+ ..+.++||||..... ....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~--~~~~~-~~~~~~~~~~D~~g~~~~~---------~~~~ 70 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYE--RTLTV-DGEDTTLVVVDTWEAEKLD---------KSWS 70 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEE--EEEEE-TTEEEEEEEECCC----------------CHH
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeE--EEEEE-CCEEEEEEEEecCCCCccc---------hhhh
Confidence 47999999999999999999998764322 2223333322 22333 33 368899999986421 0111
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++..+|++++|+|++++-+.... .++..+..... ....|+++|.||+|....
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 71 QESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC 126 (175)
T ss_dssp HHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT
T ss_pred HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc
Confidence 22346778999999999754433322 33333433211 112389999999998653
No 63
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.54 E-value=7.2e-14 Score=110.55 Aligned_cols=115 Identities=14% Similarity=0.108 Sum_probs=73.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+++|++|+|||||+|.+++...... .. |.........+ .+..+.++||||...+... ..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------~~ 80 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEVVTT-KP----TIGFNVETLSY-KNLKLNVWDLGGQTSIRPY-----------WR 80 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEEEEE-CS----STTCCEEEEEE-TTEEEEEEEEC----CCTT-----------GG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCcCcc-CC----cCccceEEEEE-CCEEEEEEECCCCHhHHHH-----------HH
Confidence 38999999999999999999997664211 11 11122334445 5788999999998764322 12
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--cccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~iil~nk~D~~~~ 152 (285)
..+..+|++++|+|+.++-+.... ..++...... ....|+++++||+|....
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTA--SKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHH--HHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHhccCCEEEEEEECCCHHHHHHH--HHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 446789999999999756554332 1223333221 123499999999998654
No 64
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.54 E-value=5.4e-14 Score=113.20 Aligned_cols=116 Identities=22% Similarity=0.184 Sum_probs=73.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||++.+++.. +.....+. +.......... .+. .+.++||||...+....
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~---------- 85 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPT--AFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLR---------- 85 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC---------CC--SSEEEEEEEEE-TTEEEEEEEEECCCSTTCSSSG----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCc--ccceeEEEEEE-CCEEEEEEEEECCCCHHHHHHh----------
Confidence 4899999999999999999999876 33222211 11111122333 443 57799999987654322
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|++++.+..+. .++..+..... . .|+++|+||+|....
T Consensus 86 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 86 -PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-K--APIILVGTQSDLRED 139 (201)
T ss_dssp -GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--SCEEEEEECGGGGGC
T ss_pred -HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhc
Confidence 2346788999999999755444442 35555555433 2 399999999998754
No 65
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=4.2e-14 Score=114.61 Aligned_cols=126 Identities=20% Similarity=0.179 Sum_probs=76.5
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCC
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSA 84 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~ 84 (285)
..+..+..... .+|+++|++|+|||||+|.+++...... ..+ ...... ...... .+ ..+.++||||...+..
T Consensus 15 ~~~~~~~~~~~--~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~-t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~ 88 (207)
T 2fv8_A 15 TENLYFQSMIR--KKLVVVGDGACGKTCLLIVFSKDEFPEV-YVP-TVFENY-VADIEV-DGKQVELALWDTAGQEDYDR 88 (207)
T ss_dssp ----CGGGSEE--EEEEEEECTTSSHHHHHHHHHHSSCC---------CCEE-EEEEEE-TTEEEEEEEEECTTCTTCTT
T ss_pred ccccccccccC--cEEEEECcCCCCHHHHHHHHhcCCCCCc-CCC-cccceE-EEEEEE-CCEEEEEEEEECCCcHHHHH
Confidence 33433443333 7999999999999999999998764322 111 111111 112233 33 4689999999876532
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.. ..++..+|++++|+|++++-+... ..++..+..... . .|+++|+||+|....
T Consensus 89 ~~-----------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 89 LR-----------PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLRSD 144 (207)
T ss_dssp TG-----------GGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGGGC
T ss_pred HH-----------HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhhcc
Confidence 21 234678999999999974433222 345555555432 2 289999999998765
No 66
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.53 E-value=1e-13 Score=107.56 Aligned_cols=114 Identities=12% Similarity=0.059 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||+|.+++...... .+|.......... .+..+.++||||...+ ......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChhh-----------HHHHHH
Confidence 3799999999999999999987653221 1233333344455 6788999999997532 112233
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--cccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~iil~nk~D~~~~ 152 (285)
++..+|++++|+|++++-+.... ..++...... ....|++++.||+|....
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNEA--REELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHH--HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HhccCCEEEEEEECCCHHHHHHH--HHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 47889999999999755433322 1223322221 112399999999998654
No 67
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.53 E-value=1.7e-13 Score=109.79 Aligned_cols=117 Identities=12% Similarity=0.041 Sum_probs=71.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
...+|+++|++|+|||||+|.+++...... .+|.......... .+..+.++||||...+....
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~----------- 90 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKIRPLW----------- 90 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CTTH-----------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhHHHHH-----------
Confidence 348999999999999999999987664221 1132233344455 67889999999986543211
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+..+|++++|+|+.++-+.... .++..+.... .....|+++|+||+|....
T Consensus 91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED-ELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhccc-ccCCCeEEEEEECCCCCCC
Confidence 1224577999999999755433322 2222222211 0112499999999998654
No 68
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.53 E-value=3.1e-14 Score=113.83 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=74.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+|+|++|+|||||+|.|++...........+.+ ........ .+ ..+.++||||...+.....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~--------- 88 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVNI-DGKQIKLQIWDTAGQESFRSITR--------- 88 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS--EEEEEEEE-TTEEEEEEEECCTTGGGTSCCCH---------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEEE-CCEEEEEEEEECCCchhhhhhHH---------
Confidence 4799999999999999999999766432212122222 22233333 33 4689999999765433221
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.++..+|++++|+|++++.+... ..++..+....... .|+++|+||+|...
T Consensus 89 --~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 89 --SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLES 140 (191)
T ss_dssp --HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred --HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCC
Confidence 23567899999999974433332 34444555443323 38999999999864
No 69
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=1.4e-13 Score=109.58 Aligned_cols=116 Identities=15% Similarity=0.099 Sum_probs=73.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+++|++|+|||||+|.+++...... .. |.........+ .+..+.++||||...+.... .
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~-----------~ 78 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SP----TIGSNVEEIVI-NNTRFLMWDIGGQESLRSSW-----------N 78 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEE-EC----CSCSSCEEEEE-TTEEEEEEECCC----CGGG-----------H
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcC-cC----CCccceEEEEE-CCEEEEEEECCCCHhHHHHH-----------H
Confidence 38999999999999999999997664321 11 22222334445 67889999999986543211 1
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+..+|++++|+|++++-+.... .++..+..... ....|+++|+||+|....
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 79 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC
Confidence 235678999999999766554432 23333332110 122499999999998754
No 70
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.53 E-value=1.9e-14 Score=130.56 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=84.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
...+|+++|.+|+|||||+|.|++........ ..++|.........+ .+..++||||||+.+................
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 34899999999999999999999876432222 234444444445555 6789999999998653211110001111111
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|+.++++..+..++..+... + .|+++|+||+|....
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDK 321 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCC
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCC
Confidence 1234567999999999888999888888877662 3 289999999998764
No 71
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.53 E-value=3.4e-14 Score=113.27 Aligned_cols=118 Identities=14% Similarity=0.041 Sum_probs=74.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEE-EEEEEeeCC-----------ceEEEEeCCCCCCCCCCc
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG-----------QVVNVIDTPGLFDFSAGS 86 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~-----------~~~~liDtpG~~~~~~~~ 86 (285)
..+|+|+|++|+|||||+|.|++........ ........ ...... .+ ..+.++||||...+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~---- 83 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFI--TTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLERF---- 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGGG----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcc--cccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHHH----
Confidence 4799999999999999999999765422211 11111111 122333 22 37999999997432
Q ss_pred HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.......+..+|++++|+|+.++.+... ..++..+..... ....|+++|+||+|...
T Consensus 84 -------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 84 -------RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLED 141 (195)
T ss_dssp -------HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGG
T ss_pred -------HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 1223455788999999999975444333 344444544432 12238999999999764
No 72
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.53 E-value=8.5e-14 Score=111.78 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=76.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe--eCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
...+|+++|.+|+|||||++.+++...... ......+.. .....+ .....+.++||||...+.......
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~------ 89 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTNK--IYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY------ 89 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGG-GGGCCCCCS--CEEEEECCTTSCCEEEEECCSSCCTTCTTCCH------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcc-eeeeccccc--eeeeeccCCCeeEEEEEECCCCHHHHhhhhhc------
Confidence 358999999999999999999998654221 111111111 122222 134679999999987653322100
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++.++|++++|+|+.+++......+..++..........|+++|.||+|+...
T Consensus 90 --~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 90 --EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp --HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred --ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 1224568999999999866434444444555543211122399999999998753
No 73
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.53 E-value=3.1e-14 Score=115.00 Aligned_cols=120 Identities=14% Similarity=0.123 Sum_probs=76.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..+|+|+|++|+|||||+|.|++...... ...+.+............ ...+.|+||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 74 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG----------- 74 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH-----------
Confidence 47999999999999999999998764322 122223333333344411 2468999999976543221
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--cccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~iil~nk~D~~~ 151 (285)
...+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|...
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 234678899999999975433322 2344444444321 01238999999999874
No 74
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.53 E-value=6.2e-14 Score=113.02 Aligned_cols=117 Identities=23% Similarity=0.215 Sum_probs=71.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+|+|++|+|||||+|.|++...... .. .|....+ ..... .....+.|+||||...+....
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~---~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 89 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFSEG-YD---PTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP---------- 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSC-CC---CCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC----------
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCC-CC---CccceEEEEEEEECCEEEEEEEEECCCccchHHHH----------
Confidence 48999999999999999999998764322 11 1222111 11111 134568999999987654332
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|+.++-+... ..++..+..... ....|+++|+||+|...
T Consensus 90 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 90 -YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSP 143 (201)
T ss_dssp -GGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGG
T ss_pred -HHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCcc
Confidence 234678999999999974433222 223333332211 11238999999999764
No 75
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.53 E-value=3.8e-14 Score=111.49 Aligned_cols=119 Identities=18% Similarity=0.087 Sum_probs=75.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||+|.+++........ .+.+.........+ .+ ..+.++||||...+ ...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 72 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERF-----------RSL 72 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGG-----------HHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEEEEEE-CCEEEEEEEEeCCCchhh-----------hhh
Confidence 3799999999999999999999766422211 12222222333334 33 47899999996432 123
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--cccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~iil~nk~D~~~ 151 (285)
....+..+|++++|+|+.++.+... ..++..+...... ....|+++|+||+|...
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 73 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 3456788999999999975433332 3344555544321 12238999999999863
No 76
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.53 E-value=1.9e-14 Score=113.31 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||+|.+++...... ...+.+.........+ .+ ..+.++||||...+... .
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~-----------~ 80 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSL-----------I 80 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGG-----------S
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHH-----------H
Confidence 7999999999999999999997654322 1223333333334444 33 46899999997543211 1
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|+.++.+... ..++..+....+... |+++|+||+|...
T Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~ 133 (179)
T 2y8e_A 81 PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV--IIMLVGNKTDLSD 133 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECGGGGG
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCcccc
Confidence 122456799999999974433222 344455554433333 8999999999764
No 77
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.53 E-value=1.7e-14 Score=117.71 Aligned_cols=119 Identities=21% Similarity=0.246 Sum_probs=76.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+|+|++|+|||||+|.|++...........+.+. .........+ ..+.++||||...+.....
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------- 79 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVN--HPVTFLDDQGNVIKFNVWDTAGQEKKAVLKD--------- 79 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEE--EEEEEEBTTSCEEEEEEEEECSGGGTSCCCH---------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceee--EEEEEEeCCCcEEEEEEEecCCchhhchHHH---------
Confidence 47999999999999999999997664222111112111 1122222122 4689999999875543222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+..+|++++|+|++++.+..+ ..++..+........ |+++|+||+|....
T Consensus 80 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~ 132 (218)
T 4djt_A 80 --VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEA--PIVVCANKIDIKNR 132 (218)
T ss_dssp --HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSS--CEEEEEECTTCC--
T ss_pred --HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccc
Confidence 22567899999999975544433 345566665554433 99999999998653
No 78
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.52 E-value=9.5e-14 Score=109.97 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=76.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+++|++|+|||||+|.|++...... ....+.+ .....+ .+..+.++||||...+.. ...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~----~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~~~ 83 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN----VEEIVI-NNTRFLMWDIGGQESLRS-----------SWN 83 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSCEEE-ECCSSSS----CEEEEE-TTEEEEEEEESSSGGGTC-----------GGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCcc-CCcCcee----eEEEEE-CCEEEEEEECCCCHhHHH-----------HHH
Confidence 48999999999999999999998764111 1112222 234445 678899999999864322 123
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|++++.+.... .++..+..... ....|+++|+||+|....
T Consensus 84 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC
Confidence 456788999999999766554432 23333322110 122399999999998754
No 79
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.52 E-value=1.4e-13 Score=109.68 Aligned_cols=117 Identities=18% Similarity=0.090 Sum_probs=75.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+|+|++|+|||||+|.|++...... ...|....+..... .+..+.++||||...+ .....
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~ 85 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKITK-GNVTIKLWDIGGQPRF-----------RSMWE 85 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEEE-TTEEEEEEEECCSHHH-----------HTTHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCCCceeEEEEEe-CCEEEEEEECCCCHhH-----------HHHHH
Confidence 47999999999999999999997664221 12233333444444 6788999999996431 11222
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|....
T Consensus 86 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC
T ss_pred HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccC
Confidence 34578899999999975433332 122222222110 122489999999998754
No 80
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.52 E-value=1.4e-14 Score=131.02 Aligned_cols=121 Identities=23% Similarity=0.259 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|+|++|+|||||+|.|++....... ...++|.........+ .+..+.|+||||+.++....+ ..-......
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve---~~gi~~~~~ 299 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVE---KIGVERSRQ 299 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEEE-TTEEEEECC-----------------------C
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHH---HHHHHHHhh
Confidence 78999999999999999999987532121 1234444444445555 788899999999975422111 111122335
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+|++++++..+..++..+. .. |+++|+||+|....
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~----~~---piivV~NK~Dl~~~ 345 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGDQEIYEQVK----HR---PLILVMNKIDLVEK 345 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHHHHHHHHHT----TS---CEEEEEECTTSSCG
T ss_pred hhhcCCEEEEEeccCCCCCHHHHHHHHhcc----CC---cEEEEEECCCCCcc
Confidence 577899999999998888887766655543 22 89999999998764
No 81
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.52 E-value=4.4e-14 Score=121.58 Aligned_cols=125 Identities=19% Similarity=0.188 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|+|++|+|||||+|.+++...... ....++|....+....+.++..+.++||||...+ ....+......
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~-~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~~ 76 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFD-TRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKDH 76 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGG-GGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-ccCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHHH
Confidence 7999999999999999999998743211 1234556666666666535678999999996532 11111122234
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
++.++|++++|+|++++-+..+. .+..++..........|+++++||+|...
T Consensus 77 ~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 77 IFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 46789999999999866655554 23333333221111239999999999876
No 82
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=3.3e-14 Score=113.65 Aligned_cols=119 Identities=17% Similarity=0.160 Sum_probs=72.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..+|+|+|++|+|||||+|.|++........ ...+.........+. ....+.|+||||...+....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------- 81 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELA--ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT----------- 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCC--CccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh-----------
Confidence 3799999999999999999999776432211 122222222233331 13568999999976543221
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|+.++.+... ..++..+..... ....|+++|+||+|...
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSS
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcc
Confidence 123567899999999974433222 223333332211 12348999999999854
No 83
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=1.5e-14 Score=115.71 Aligned_cols=119 Identities=13% Similarity=0.069 Sum_probs=75.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+|+|++|+|||||+|.+++...........+.+.......... .+..+.|+||||... +.....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~ 90 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQER-----------YRTITT 90 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT-TTEEEEEECHHHHHH-----------CHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC-EEEEEEEEeCCChHH-----------HHHHHH
Confidence 47999999999999999999997653222111122232222222211 356799999999432 222333
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.++..+|++++|+|++++-+... ..++..+....... .|+++|+||+|...
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEE 142 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence 44678899999999975433222 34555555543233 39999999999753
No 84
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.52 E-value=5.9e-14 Score=109.20 Aligned_cols=118 Identities=21% Similarity=0.092 Sum_probs=62.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
..+|+++|++|+|||||+|.+++....... ...+.+.. ...... ....+.++||||...+.. ..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~ 66 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRW-----------LP 66 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE---EEEEETTEEEEEEEEECC--------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-CccccceE---EEEEECCEEEEEEEEECCCCccchh-----------hh
Confidence 379999999999999999999987643221 11222221 122221 234588999999765321 12
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|++++-+... ..++..+..... ....|+++|.||+|....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccc
Confidence 234677899999999975533322 233333433211 122489999999998643
No 85
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.52 E-value=4.4e-14 Score=111.36 Aligned_cols=118 Identities=23% Similarity=0.222 Sum_probs=72.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~ 93 (285)
....+|+++|++|+|||||+|.|++.... .... .|....+ ....+ .+ ..+.++||||...+.....
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~---~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~------ 75 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYD---PTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMRE------ 75 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCC---TTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCc-cccC---CCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHHH------
Confidence 34489999999999999999999987532 2111 1222112 22333 33 4688999999876532221
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+..+|++++|+|+.++-+... ..++..+..... ....|+++|+||+|...
T Consensus 76 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 76 -----QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES 128 (181)
T ss_dssp -----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGG
T ss_pred -----HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 12345699999999974433222 233444433222 11238999999999764
No 86
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.52 E-value=3.2e-14 Score=112.68 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||+|.+++...... . ..+++.........+ .+ ..+.++||||...+.. ..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~-~-~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~-----------~~ 74 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNST-F-ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRT-----------IT 74 (183)
T ss_dssp EEEEEECCCCC----------------C-H-HHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------C
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-C-CCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhh-----------hH
Confidence 7999999999999999999997653211 1 112222232333444 44 5689999999764321 12
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|++++.+... ..++..+....... .|+++|+||+|....
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDK 128 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSC
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCcc
Confidence 345778999999999975433322 23445555443323 399999999998643
No 87
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.52 E-value=5.8e-14 Score=113.00 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=70.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+|+|++|+|||||+|.+++...........+.+.. ...... .+ ..+.|+||||...+. ..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~~~-------~~---- 93 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ--MKTLIV-DGERTVLQLWDTAGQERFR-------SI---- 93 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CE--EEEEEE-TTEEEEEEEEECTTCTTCH-------HH----
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeE--EEEEEE-CCEEEEEEEEECCCCcchh-------hh----
Confidence 489999999999999999999977642221111222222 222333 33 458999999976431 11
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
...++..+|++++|+|+.++.+... ..++..+....... .|+++|+||+|..
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~ 146 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccc
Confidence 1222445799999999975544333 34445555443223 3899999999975
No 88
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=6.5e-14 Score=109.37 Aligned_cols=118 Identities=23% Similarity=0.198 Sum_probs=71.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||+|.+++...........+.+.. ..... . ...+.++||||..++. . +
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~~~~~Dt~G~~~~~----~----~--- 67 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR---QVISC-DKSICTLQITDTTGSHQFP----A----M--- 67 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE---EEEEE-TTEEEEEEEEECCSCSSCH----H----H---
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE---EEEEE-CCEEEEEEEEECCCchhhH----H----H---
Confidence 379999999999999999999986643221111111111 11222 2 2458999999976531 1 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 1122345699999999974433322 344555555433212238999999999764
No 89
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.51 E-value=2.6e-12 Score=112.71 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCC--CCcce-----------------------------------------
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS--SGVTS----------------------------------------- 56 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~--~~~t~----------------------------------------- 56 (285)
++|+|+|.+|+|||||+|+|+|....+.+... ..++.
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~ 111 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 111 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence 69999999999999999999998753322111 00110
Q ss_pred ------eEEEEEEEeeCCceEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhccCC-ccEEEEEEeCCCCCCHHHHHHHHH
Q 023214 57 ------TCEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDG-IHAVLVVFSVRSRFSQEEEAALHS 127 (285)
Q Consensus 57 ------~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~l~~ 127 (285)
......+....+..++||||||+...... .......+...+..++.. .+++++|++++..+...+. +.+
T Consensus 112 ~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~~i 189 (353)
T 2x2e_A 112 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LKV 189 (353)
T ss_dssp TTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--HHH
T ss_pred CCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--HHH
Confidence 00001111112467999999999753211 222222333333333334 4566667787655555443 233
Q ss_pred HHHHhCccccCeEEEEEeCCCCCCC
Q 023214 128 LQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 128 ~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+...... ..|+++|+||+|....
T Consensus 190 ~~~~~~~--~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 190 AKEVDPQ--GQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHCTT--CTTEEEEEECGGGSCT
T ss_pred HHHhCcC--CCceEEEeccccccCc
Confidence 4433222 2389999999998754
No 90
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.51 E-value=4.2e-13 Score=117.90 Aligned_cols=126 Identities=18% Similarity=0.127 Sum_probs=83.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+++|++|+|||||+|.|+|....... ..+.|.......... .+..+.++||||+.+.......... ...+.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~~ 241 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIAS--YPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIE--KQAIL 241 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEEC--CTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHH--HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHH--HHHHH
Confidence 379999999999999999999998742221 123444444455544 5778999999999765332211111 11222
Q ss_pred hccCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~--~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.....+|++++|+|+++.. +..+ ..++..+...++. .|+++|+||.|....
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~---~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD---LPFLVVINKIDVADE 295 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTT---SCEEEEECCTTTCCH
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCC---CCEEEEEECcccCCh
Confidence 3334679999999986443 5444 4566666665532 399999999998754
No 91
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=115.43 Aligned_cols=117 Identities=14% Similarity=0.208 Sum_probs=72.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||+|.|++...... .....+.........+ .+ ..+.++||||...+ ...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------~~~---- 91 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEA--CKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-------NSI---- 91 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-------HHH----
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcC--CCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------HHH----
Confidence 47899999999999999999998764322 1122333333344444 33 46899999996532 111
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
....+..+|++++|+|+.++.+..+ ..++..+....... .|+++|+||+|...
T Consensus 92 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~ 145 (192)
T 2il1_A 92 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCET 145 (192)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence 1222456799999999975544433 23444555543323 38999999999764
No 92
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.51 E-value=6.6e-14 Score=114.80 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=74.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+|+|++|+|||||+|.|++........ .+.+.......+.+ .+ ..+.|+||||...+....
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~---------- 79 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK--STIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAIT---------- 79 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCC----------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhH----------
Confidence 3799999999999999999999876432211 12222222233334 34 478999999987653322
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|+.++.+... ..++..+....... .|++||+||+|...
T Consensus 80 -~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 80 -SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAH 132 (223)
T ss_dssp -GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred -HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence 234778999999999975544333 23445555443323 38999999999764
No 93
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=116.47 Aligned_cols=136 Identities=21% Similarity=0.221 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-----Ccc---eeEEEEEEEeeCCceEEEEeCCCCCCCCCCc---HH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----GVT---STCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EF 88 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-----~~t---~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~ 88 (285)
.+++|+|+||+|||||+|+|+|...+..|.... ..+ ....+..+...-...++++|+||+....... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 789999999999999999999988766553211 111 1112221211113468999999997643211 11
Q ss_pred HHH----HHHHHHhhc----------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 89 VGK----EIVKCIGMA----------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 89 ~~~----~~~~~~~~~----------~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
+.. .+....... ...+++.++++|. ++++++.+...+..+... .++++|+||+|.++.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~- 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL- 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence 222 222222111 1235888999986 578999997777766543 299999999999987
Q ss_pred hhcHHHHhhh
Q 023214 154 DETLEDYLGR 163 (285)
Q Consensus 154 ~~~l~~~l~~ 163 (285)
..+..+...
T Consensus 156 -~e~~~~k~~ 164 (270)
T 3sop_A 156 -EEKSEFKQR 164 (270)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 556555553
No 94
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.51 E-value=2.4e-13 Score=110.13 Aligned_cols=129 Identities=16% Similarity=0.264 Sum_probs=75.4
Q ss_pred ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc---HH
Q 023214 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EF 88 (285)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~ 88 (285)
+++..+ .+|+|+|++|+|||||+|.|+|......-....+.+..... ..+ .+ .+.++||||+....... ..
T Consensus 21 ~~~~~~--~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~ 94 (210)
T 1pui_A 21 LPSDTG--IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEV-AD-GKRLVDLPGYGYAEVPEEMKRK 94 (210)
T ss_dssp SSCSCS--EEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEE-ET-TEEEEECCCCC------CCHHH
T ss_pred CCCCCC--cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEe-cC-CEEEEECcCCcccccCHHHHHH
Confidence 677777 89999999999999999999987621110112233332222 222 22 67899999986432111 11
Q ss_pred HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+...+..++ .....++++++++|+..+.+..+.....++.. .+ .|++++.||+|..+.
T Consensus 95 ~~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 95 WQRALGEYL-EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SN----IAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHHHHHH-HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCH
T ss_pred HHHHHHHHH-HhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEecccCCCc
Confidence 122222222 22356789999999976777655444444432 22 278899999998764
No 95
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.51 E-value=1.5e-13 Score=109.96 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=75.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEE-EEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR-TVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
..+|+++|++|+|||||+|.+++.... ... ..|....+.. ... .+ ..+.++||||...+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 86 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEIP-TAY---VPTVFENFSHVMKY-KNEEFILHLWDTAGQEEYDR----------- 86 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SSC---CCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGTT-----------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCC-Ccc---CCeeeeeeEEEEEE-CCEEEEEEEEECCCcHHHHH-----------
Confidence 379999999999999999999987642 211 1122222222 222 33 3469999999764322
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
....++..+|++++|+|+.++.+... ..++..+..... . .|+++|.||+|...
T Consensus 87 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 87 LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-T--AKTVLVGLKVDLRK 141 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SEEEEEEECGGGCC
T ss_pred HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhcc
Confidence 12345778999999999975544444 345555555432 2 29999999999864
No 96
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.50 E-value=2e-13 Score=110.94 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=72.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||++.+++.... .... +.+ .......+.. +..+.++||||...+ ...+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~--- 71 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYR-DTQT--SIT--DSSAIYKVNNNRGNSLTLIDLPGHESL-------RFQL--- 71 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCC-CBCC--CCS--CEEEEEECSSTTCCEEEEEECCCCHHH-------HHHH---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc-cccC--Ccc--eeeEEEEecCCCccEEEEEECCCChhH-------HHHH---
Confidence 379999999999999999999977632 2221 112 2233355522 567999999997521 1112
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh----CccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF----GKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~iil~nk~D~~~~ 152 (285)
...++.++|++++|+|+.+ +..........+...+ ......|+++|.||+|....
T Consensus 72 ~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 72 LDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 2233678899999999973 2222222333332221 11222499999999998765
No 97
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.50 E-value=7.7e-14 Score=110.52 Aligned_cols=115 Identities=20% Similarity=0.111 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++.... ....+. +.......... .+ ..+.++||||...+... .
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~ 70 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPT--VFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRL-----------R 70 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCC--SCCEEEEEEEE-TTEEEEEEEECCCCSGGGTTT-----------G
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCc--ccceeEEEEEE-CCEEEEEEEEECCCCHhHHHH-----------H
Confidence 79999999999999999999976532 211111 11111122233 33 34679999998654221 2
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+..+|++++|+|++++.+..+. .++..+....+ . .|+++|+||+|....
T Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 71 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD 124 (186)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--SCEEEEEECHHHHTC
T ss_pred HHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-C--CCEEEEeEccccccc
Confidence 2346789999999999755444333 35555655433 2 399999999998755
No 98
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.50 E-value=5.8e-14 Score=113.34 Aligned_cols=120 Identities=20% Similarity=0.122 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeEEEEEEEeeC---CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKD---GQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
.+|+|+|++|+|||||+|.|++... +..... .............+.. ...+.++||||... +..
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~ 88 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYA-MTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL-----------YKE 88 (208)
T ss_dssp EEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHH-----------HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCC-CccceEEEEEEEEECCcccEEEEEEEECCCcHH-----------HHH
Confidence 7999999999999999999998721 211111 1111122233344412 34699999999742 223
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~iil~nk~D~~~ 151 (285)
....++..+|++++|+|++++.+... ..++..+....+. ....|+++|+||+|...
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 89 QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 44566788999999999975544333 3455555554330 01239999999999865
No 99
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.50 E-value=3.8e-13 Score=106.89 Aligned_cols=118 Identities=18% Similarity=0.260 Sum_probs=75.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||+|.|++...+.... .++|.......+.+ .+..+.++||||...+..... ...+...+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~~~ 82 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDYII 82 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHHHHh
Confidence 799999999999999999999876433322 34455555555666 678899999999987633211 1222222111
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
...+|++++|+|..+ + .....++..+.. .. .|+++++||+|..
T Consensus 83 -~~~~~~~i~v~d~~~-~-~~~~~~~~~~~~---~~--~piilv~nK~Dl~ 125 (188)
T 2wjg_A 83 -NEKPDLVVNIVDATA-L-ERNLYLTLQLME---MG--ANLLLALNKMDLA 125 (188)
T ss_dssp -HHCCSEEEEEEEGGG-H-HHHHHHHHHHHT---TT--CCEEEEEECHHHH
T ss_pred -ccCCCEEEEEecchh-H-HHHHHHHHHHHh---cC--CCEEEEEEhhhcc
Confidence 124789999999862 2 112223333322 22 3899999999975
No 100
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.50 E-value=9.8e-14 Score=109.86 Aligned_cols=120 Identities=24% Similarity=0.262 Sum_probs=72.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 023214 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEI 93 (285)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~ 93 (285)
..+..+|+++|++|+|||||+|.+++...... ..+ ...... ...... .+. .+.++||||...+.....
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-~~~-t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~------ 84 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDD-YDP-TIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMRE------ 84 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSC-CCT-TCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHH------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCC-CCC-Ccccee-EEEEEe-CCcEEEEEEEECCCchhhHHHHH------
Confidence 33458999999999999999999997653222 111 111111 222333 443 366799999765432211
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
.++..+|++++|+|+.++-+... ..++..+..... ....|+++|+||+|...
T Consensus 85 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 85 -----QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMH 137 (183)
T ss_dssp -----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCST
T ss_pred -----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchh
Confidence 12345799999999975433322 234444444322 12238999999999764
No 101
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.50 E-value=2.8e-13 Score=107.34 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=74.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+++|++|+|||||++.+++...... .+|.........+ .+..+.++||||...+ .....
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~~~ 78 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIGGQRKI-----------RPYWR 78 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECSSCGGG-----------HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECCCCHHH-----------HHHHH
Confidence 48999999999999999999998753211 1122222334455 5788999999997532 11223
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|+.++-+.... .++..+..... ....|++++.||+|....
T Consensus 79 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 79 SYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccC
Confidence 346788999999999755443332 22222211111 122489999999998754
No 102
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=114.27 Aligned_cols=117 Identities=18% Similarity=0.178 Sum_probs=70.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+|+|++|+|||||+|.|++........ .+.+.......... .+ ..+.|+||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~----------- 90 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSV----------- 90 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHH-----------
Confidence 3799999999999999999999876432211 12222222233333 33 57999999996432211
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++..+|++++|+|+.++.+... ..++..+....... .|+++|+||+|...
T Consensus 91 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~ 144 (200)
T 2o52_A 91 TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDP 144 (200)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGG
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCccc
Confidence 1233567899999999975433332 33444454443333 38999999999753
No 103
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.49 E-value=7.5e-14 Score=108.48 Aligned_cols=117 Identities=20% Similarity=0.175 Sum_probs=70.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||+|.+++.... ....+. +.......... .+ ..+.++||||...+. . .
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t--~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~----~-------~ 68 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPT--KADSYRKKVVL-DGEEVQIDILDTAGQEDYA----A-------I 68 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTT--CCEEEEEEEEE-TTEEEEEEEEECCC---CH----H-------H
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCC--cceEEEEEEEE-CCEEEEEEEEECCCcchhH----H-------H
Confidence 379999999999999999999977632 211111 11111122333 33 368999999976431 1 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++..+|++++|+|+.++.+... ..++..+..... ....|+++++||+|...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGG
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccc
Confidence 1122446799999999974433222 344445554433 11239999999999764
No 104
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=6.9e-14 Score=112.99 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=76.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+|+|++|+|||||+|.+++...... . ..+++.........+ .+ ..+.++||||...+ ...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~-~-~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~~~ 91 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG-Q-GATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERF-----------RSI 91 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTT-C-CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------HHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCC-C-CCccceeEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HHH
Confidence 37999999999999999999997664221 1 122223333333444 33 36899999996431 223
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++..+|++++|+|++++.+... ..++..+....... .|+++|.||+|...
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAE 145 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence 4456788999999999974433322 34455555543323 38999999999763
No 105
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=1.7e-13 Score=120.47 Aligned_cols=130 Identities=21% Similarity=0.284 Sum_probs=68.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC-----CCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCC---
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAG--- 85 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~--- 85 (285)
+...+|+|+|++|+|||||+|+|++...+..+..+ ...|........... .+ ..++++||||+.+....
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 33478999999999999999999988766543321 112333222222221 23 36899999999654321
Q ss_pred ----cHHHHHHHHHHHhhc---------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 86 ----SEFVGKEIVKCIGMA---------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 86 ----~~~~~~~~~~~~~~~---------~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...+...+..++... -..+|+++|+++. .+++...+..++..+ ...+ |+|+|+||+|...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~--piIlV~NK~Dl~~ 188 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKV--NIVPVIAKADTLT 188 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-S--CEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCC--CEEEEEECCCCCC
Confidence 111222222333221 1235788998886 567887776554443 3333 9999999999876
Q ss_pred C
Q 023214 152 D 152 (285)
Q Consensus 152 ~ 152 (285)
.
T Consensus 189 ~ 189 (361)
T 2qag_A 189 L 189 (361)
T ss_dssp H
T ss_pred H
Confidence 5
No 106
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.49 E-value=5.2e-14 Score=109.45 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=71.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||+|.+++..... ... .|....+ ...... ....+.++||||...+.. ..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~-~~~---~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~------- 68 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVE-KYD---PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----MR------- 68 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC-SCC---CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----HH-------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCC---CCccceEEEEEEECCEEEEEEEEECCChHHHHH----HH-------
Confidence 799999999999999999999765322 111 1222222 222231 134689999999875432 11
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...+..+|++++|+|+.++.+... ..++..+..... ....|+++++||+|...
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 122 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGG
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccc
Confidence 112345699999999975433222 234444544332 12238999999999864
No 107
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.49 E-value=9.2e-14 Score=110.34 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=74.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||+|.+++.... .... +|....+ ...... ....+.++||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~---~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 71 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYV---PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------- 71 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCC---CCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT-----------
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCC-CCCC---CccceeEEEEEEECCEEEEEEEEECCCChhhhhh-----------
Confidence 379999999999999999999976532 2111 1222111 122331 1346899999997643221
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++..+|++++|+|++++.+... ..++..+..... . .|+++|.||+|....
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 72 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTD 126 (184)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGC
T ss_pred HHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhhcc
Confidence 1235778999999999975544333 234455555433 2 399999999998643
No 108
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.49 E-value=1.8e-13 Score=115.61 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|+|++|+|||||+|.|+|...+.+.. .++|+......+.. +..+.++||||..++..... ...+...+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~--pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~~ 77 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNW--PGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYLL 77 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSS--SCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHHh
Confidence 799999999999999999999976443322 34555433333322 66799999999987643221 2223222221
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
...+|++++|+|+++ . .....++..+.. .+ .|+++++||+|..
T Consensus 78 -~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~-~~----~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 78 -SQRADSILNVVDATN-L-ERNLYLTTQLIE-TG----IPVTIALNMIDVL 120 (272)
T ss_dssp -TTCCSEEEEEEEGGG-H-HHHHHHHHHHHH-TC----SCEEEEEECHHHH
T ss_pred -cCCCCEEEEEecCCc-h-HhHHHHHHHHHh-cC----CCEEEEEEChhhC
Confidence 146899999999863 2 112223333333 12 2899999999975
No 109
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.49 E-value=6.7e-14 Score=124.96 Aligned_cols=126 Identities=20% Similarity=0.203 Sum_probs=83.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
.+...+|+++|++|+|||||+|.|++...... ....+.|.........+.....+++|||||+.++...........
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~-- 107 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKA-- 107 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHH--
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHH--
Confidence 34458999999999999999999998775222 223455666666667663334899999999987654322211222
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
..++..+|++++|+|+ .....+..++..+... + .|+++|+||+|.....
T Consensus 108 --~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-~----~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 108 --RRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-E----IPFVVVVNKIDVLGEK 156 (423)
T ss_dssp --HHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-T----CCEEEECCCCTTTTCC
T ss_pred --HHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-C----CCEEEEEeCcCCCCcc
Confidence 2335678999999998 5666777788877765 2 2899999999988663
No 110
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.49 E-value=1.4e-13 Score=112.14 Aligned_cols=116 Identities=22% Similarity=0.155 Sum_probs=64.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||+|.|++.... ....+. +.......... .+ ..+.++||||...+.. .
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t--~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~-----------~ 98 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPT--VFERYMVNLQV-KGKPVHLHIWDTAGQDDYDR-----------L 98 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCC--CCEEEEEEEEE-TTEEEEEEEEEC--------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCc--cceeEEEEEEE-CCEEEEEEEEECCCchhhhH-----------H
Confidence 379999999999999999999987642 211111 11111122333 33 3689999999764321 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++..+|++++|+|++++.+.... .++..+..... . .|+++|+||+|....
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 99 RPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLRKD 153 (214)
T ss_dssp ------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGGSC
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhhcc
Confidence 22346788999999999755443332 34555555432 2 389999999998765
No 111
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.49 E-value=1.4e-13 Score=111.26 Aligned_cols=117 Identities=21% Similarity=0.127 Sum_probs=75.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
...+|+++|++|+|||||++.+++...... .. +.+.......... .+. .+.++||||...+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~----------- 93 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE-YI--PTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDR----------- 93 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC--CC--CCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGTT-----------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCC-cC--CeecceeEEEEEE-CCEEEEEEEEECCCchhhHH-----------
Confidence 348999999999999999999996553211 11 1122221222233 343 456999999865432
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
....++..+|++++|+|++++.+..+. .++..+..... . .|+++|+||+|....
T Consensus 94 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD 149 (204)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECHHHHTC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhccc
Confidence 122457789999999999755544443 35555555432 2 399999999998765
No 112
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.49 E-value=8.1e-14 Score=125.79 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=77.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV-KCI 97 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~-~~~ 97 (285)
..+|+|+|++|+|||||+|.|+|....... ...++|.......+.+ .+..+.++||||+.............+. ...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 379999999999999999999998642221 2234555554556666 7888999999998532211100000000 000
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|+..+.+..+......+... + .|+++++||+|....
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~-~----~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-G----RASVVVFNKWDLVVH 307 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSTT
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccCCCc
Confidence 1223456999999999877887775555544432 3 289999999998765
No 113
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.49 E-value=2.3e-13 Score=125.65 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=87.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc------------------cc--ccCCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAF------------------KS--RASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~------------------~~--~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG 78 (285)
.++|+|||+.++|||||...|+-.... +. .-...|+|+.....+..| .+..++||||||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPG 109 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTPG 109 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCCC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCCC
Confidence 489999999999999999998721110 00 011246777777788888 899999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
+.||.. ++.+. +..+|++++|+|+..++.......|+.+... + . |.++++||+|....+
T Consensus 110 HvDF~~-------Ev~ra----L~~~DgAvlVvda~~GV~~qT~~v~~~a~~~-~--l--p~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 110 HQDFSE-------DTYRV----LTAVDSALVVIDAAKGVEAQTRKLMDVCRMR-A--T--PVMTFVNKMDREALH 168 (548)
T ss_dssp GGGCSH-------HHHHH----HHSCSEEEEEEETTTBSCHHHHHHHHHHHHT-T--C--CEEEEEECTTSCCCC
T ss_pred cHHHHH-------HHHHH----HHhcCceEEEeecCCCcccccHHHHHHHHHh-C--C--ceEEEEecccchhcc
Confidence 999853 33334 4456999999999889999999999888764 3 2 899999999988654
No 114
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.49 E-value=2.3e-13 Score=109.67 Aligned_cols=116 Identities=19% Similarity=0.150 Sum_probs=75.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||++.+++...........+.... ..... .+ ..+.++||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~l~i~Dt~G~~~~~~~----------- 89 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI---ADIEV-DGKQVELALWDTAGQEDYDRL----------- 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE---EEEEE-TTEEEEEEEECCCCSGGGTTT-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE---EEEEE-CCEEEEEEEEECCCchhHHHH-----------
Confidence 479999999999999999999977643221111111111 12233 33 46899999997643221
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++..+|++++|+|++++-+... ..++..+..... . .|+++|+||+|....
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 90 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRQD 144 (201)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGTTC
T ss_pred HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhhcC
Confidence 1235778999999999975433333 245555555432 2 399999999998765
No 115
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.49 E-value=6.7e-14 Score=109.21 Aligned_cols=118 Identities=23% Similarity=0.135 Sum_probs=66.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||+|.+++......... +.+.......... .+ ..+.++||||...+... +.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~-------~~--- 69 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEM--ENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW-------LQ--- 69 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccC--CCcCCeeeEEEEE-CCeEEEEEEEECCCccccchh-------hh---
Confidence 6899999999999999999997654222211 1222222233333 33 45789999998754211 11
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|++++-+... ..++..+..... ....|+++|.||+|...
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR 123 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGG
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhh
Confidence 112344799999999975433222 234444444322 11239999999999763
No 116
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.49 E-value=2.2e-13 Score=108.87 Aligned_cols=123 Identities=11% Similarity=0.094 Sum_probs=74.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeEEEEEE---Eee-CCceEEEEeCCCCCCCCCCcHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRT---VLK-DGQVVNVIDTPGLFDFSAGSEF 88 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~------~~~~t~~~~~~~~---~~~-~~~~~~liDtpG~~~~~~~~~~ 88 (285)
..+|+|+|++|+|||||++.+.|......... ....|....+... ... ....+.++||||...+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---- 89 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA---- 89 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH----
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH----
Confidence 37999999999999999999987654221100 0112332222211 110 124589999999875421
Q ss_pred HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC----ccccCeEEEEEeCCCCCCC
Q 023214 89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~iil~nk~D~~~~ 152 (285)
....++..+|++++|+|+.++.+......+..+...+. .....|+++|.||+|....
T Consensus 90 -------~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 90 -------SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp -------HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred -------HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence 12234778999999999975544444444444333221 1123499999999998654
No 117
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.49 E-value=3.5e-13 Score=115.28 Aligned_cols=130 Identities=14% Similarity=0.106 Sum_probs=75.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CC----------------------ccee---------------
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SG----------------------VTST--------------- 57 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~----~~----------------------~t~~--------------- 57 (285)
.++|+|+|.+|+|||||+|+|+|....+.+... .+ .|..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g 105 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence 379999999999999999999998753222110 00 0000
Q ss_pred --------EEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhccCCccEEE-EEEeCCCCCCHHHHHHHH
Q 023214 58 --------CEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVL-VVFSVRSRFSQEEEAALH 126 (285)
Q Consensus 58 --------~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~v~~~~~~~~~~~~~~l~ 126 (285)
.............++||||||+..... ........+...+..++..+++++ +|+|++.+++..+.. .
T Consensus 106 ~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~--~ 183 (299)
T 2aka_B 106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL--K 183 (299)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH--H
T ss_pred cCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH--H
Confidence 000111111246799999999975321 012222233333444455666555 789987666655532 2
Q ss_pred HHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 127 SLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 127 ~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++...... ..|+++|+||+|....
T Consensus 184 ~~~~~~~~--~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 184 IAKEVDPQ--GQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHCTT--CSSEEEEEECGGGSCT
T ss_pred HHHHhCCC--CCeEEEEEEccccCCC
Confidence 22322121 2389999999998754
No 118
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.49 E-value=3.8e-13 Score=104.31 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||+|.+++...... ..+. .. ......... .+ ..+.++||||...+. . +.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~-~~-~~~~~~~~~-~~~~~~~~l~D~~G~~~~~----~----~~--- 68 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEK-YDPT-IE-DFYRKEIEV-DSSPSVLEILDTAGTEQFA----S----MR--- 68 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTT-CC-EEEEEEEEE-TTEEEEEEEEECCCTTCCH----H----HH---
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCccc-CCCC-cc-eeEEEEEEE-CCEEEEEEEEECCCchhhH----H----HH---
Confidence 7999999999999999999997654322 1111 11 111222333 33 348999999976431 1 11
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...+..+|++++|+|+.++.+... ..++..+..... ....|+++|+||+|...
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 69 DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccc
Confidence 122445699999999974433322 234444444332 12248999999999754
No 119
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.48 E-value=1.4e-13 Score=106.55 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||+|.+++...... ..+. +.......... .+ ..+.++||||...+.. ..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~--~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~----~~------- 68 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDE-CDPT--IEDSYRKQVVI-DGETCLLDILDTAGQEEYSA----MR------- 68 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSC-CCTT--CCEEEEEEEEE-TTEEEEEEEEECCCCSSCCH----HH-------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccc-cCCc--cceEEEEEEEE-CCEEEEEEEEECCCchhhhH----HH-------
Confidence 6899999999999999999997754222 1111 11111222233 33 3478999999765321 11
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|+.++.+... ..++..+..... ....|+++++||+|....
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCC
T ss_pred HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhc
Confidence 112345699999999874433222 344444544432 112389999999998753
No 120
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.6e-13 Score=109.69 Aligned_cols=120 Identities=10% Similarity=0.120 Sum_probs=69.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+++|++|+|||||+|.|++........ ....+... .+ .+..+.++||||...+..... . ++.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~-~~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~~~---~----~~~ 113 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAA-----DY-DGSGVTLVDFPGHVKLRYKLS---D----YLK 113 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCHH---H----HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCcccc-cCCCceee-----ee-cCCeEEEEECCCCchHHHHHH---H----HHH
Confidence 4799999999999999999999876422111 11111111 11 456789999999976543221 2 222
Q ss_pred hccCCccEEEEEEeCC-CCCCHHH-HHHHHHHHHHhC--ccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVR-SRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~-~~~~~~~-~~~l~~~~~~~~--~~~~~~~iil~nk~D~~~~ 152 (285)
.....+|++++|+|+. +.-+... ..++..+..... .....|+++|+||+|....
T Consensus 114 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred hhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 2234579999999986 2211111 122222222111 0112389999999998865
No 121
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=2.4e-13 Score=108.72 Aligned_cols=116 Identities=18% Similarity=0.121 Sum_probs=76.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||++.+++... .....+. +... ....... .+ ..+.++||||...+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t-~~~~-~~~~~~~-~~~~~~~~i~D~~G~~~~~~~----------- 82 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPT-VFDH-YAVSVTV-GGKQYLLGLYDTAGQEDYDRL----------- 82 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCS-SCCC-EEEEEES-SSCEEEEEEECCCCSSSSTTT-----------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCc-ccce-eEEEEEE-CCEEEEEEEEECCCCcchhHH-----------
Confidence 37999999999999999999997753 2221111 1111 1122333 33 46889999998765322
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++..+|++++|+|+.++-+.... .++..+..... . .|+++|+||+|....
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 83 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-N--VPFLLIGTQIDLRDD 137 (194)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECTTSTTC
T ss_pred HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc
Confidence 12457789999999999755333332 45556655433 2 399999999998765
No 122
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.48 E-value=2.9e-13 Score=107.85 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=69.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|.+|+|||||+|.|++...... ..+ .+.......... .+ ..+.|+||||...+.. .
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~-----------~ 85 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDE-YDP--TIEDSYRKQVVI-DGETCLLDILDTAGQEEYSA-----------M 85 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSC-CCT--TCCEEEEEEEEE-TTEEEEEEEEECCC------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccc-cCC--ccceEEEEEEEE-CCEEEEEEEEECCChHHHHH-----------H
Confidence 37999999999999999999997753221 111 111111222333 33 3488999999764321 2
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++..+|++++|+|+.++.+..+ ..++..+..... ....|+++|+||+|...
T Consensus 86 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 86 RDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp ----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC
T ss_pred HHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCc
Confidence 2244678899999999975544333 234444444432 11238999999999765
No 123
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.48 E-value=6.7e-14 Score=128.53 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=84.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccc----------------cc----cCCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFK----------------SR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG 78 (285)
.++|+|+|++|+|||||+|.|++..... .. ....++|.........+ .+..++||||||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTPG 91 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTPG 91 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECCC
Confidence 3799999999999999999997221100 00 00124455555566666 788999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+.++.. ....++..+|++++|+|+.++.+......+..+... + . |+++++||+|....
T Consensus 92 ~~df~~-----------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-~--i--PiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTE-----------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-H--T--PIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCH-----------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-T--C--CEEEEEECTTSCCS
T ss_pred chhHHH-----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C--C--CEEEEEeCCCCccc
Confidence 987642 122346678999999999888888888888766543 2 2 89999999998754
No 124
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=1.1e-13 Score=111.05 Aligned_cols=118 Identities=23% Similarity=0.204 Sum_probs=72.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEE-EEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR-TVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
..+|+++|++|+|||||+|.|++......... |....+.. ... . ...+.++||||...+. . +
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~----~-- 72 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP----TIEDTYRQVISC-DKSVCTLQITDTTGSHQFP----A----M-- 72 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC----CCCEEEEEEEEE-TTEEEEEEEEECCGGGSCH----H----H--
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcccC----ccccceeEEEEE-CCEEEEEEEEeCCChHHhH----H----H--
Confidence 38999999999999999999997654222111 11111111 222 2 3468999999976431 1 1
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|....
T Consensus 73 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~ 129 (199)
T 2gf0_A 73 -QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR 129 (199)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred -HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence 1122445799999999974433222 2345555554332123489999999998653
No 125
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.48 E-value=1.6e-13 Score=112.08 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
.+|+|||.+|+|||||++.++.... +.... +|+...+ ..... .+ ..+.||||+|...+..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~---~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~~----------- 77 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSF-DNTYQ---ATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFRS----------- 77 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-C-------------CEEEEEEC-SSCEEEEEEECCSCTTTCGG-----------
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCC-CCCcC---CccceEEEEEEEEe-cceEEEEEEEECCCchhhhh-----------
Confidence 7999999999999999999986553 22211 2222222 22223 33 4578999999876532
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
....++.+++++++|+|.+++-+... ..++..+....++.+ |++||.||.|+..
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~ 132 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLAD 132 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGG
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHh
Confidence 12234778999999999975555443 456666766656554 9999999999764
No 126
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.48 E-value=5.2e-14 Score=115.18 Aligned_cols=120 Identities=20% Similarity=0.131 Sum_probs=75.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
...+|+++|.+|+|||||+|.++............+.+.......... .+..+.++||||...+.....
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~---------- 82 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLRD---------- 82 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCCH----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHHH----------
Confidence 348999999999999999999553332111112223333332222211 245689999999765433222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|++++.+... ..++..+..... . .|+++|+||+|....
T Consensus 83 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 83 -GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDR 134 (221)
T ss_dssp -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-T--CCEEEEEECTTSSSC
T ss_pred -HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCccccc
Confidence 23567899999999975544333 344555555433 2 289999999998654
No 127
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.48 E-value=6.2e-13 Score=107.16 Aligned_cols=117 Identities=21% Similarity=0.189 Sum_probs=72.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+|+|++|+|||||+|.|++.... ....+. +.........+ .+ ..+.|+||||...+. . +
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t--~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~----~--- 78 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPT--KADSYRKKVVL-DGEEVQIDILDTAGQEDYA----A----I--- 78 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCTT--CCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----H----H---
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCc--cceEEEEEEEE-CCEEEEEEEEcCCChhhhH----H----H---
Confidence 479999999999999999999977632 221111 11111223333 33 368999999976531 1 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
....+..+|++++|+|+.++-+... ..++..+..... ....|+++|+||+|...
T Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 79 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 133 (206)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGG
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccc
Confidence 1122445799999999974433222 344444554432 11238999999999864
No 128
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.48 E-value=2.5e-13 Score=110.76 Aligned_cols=116 Identities=15% Similarity=0.064 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+|+|++|+|||||++.+++.... .... .|....+. ..... ....+.|+||||...+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~---~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 91 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYV---PTVFENYTACLETEEQRVELSLWDTSGSPYYDNV----------- 91 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCC---CCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTT-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-CCcC---CeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHH-----------
Confidence 389999999999999999999976642 2111 12222221 12221 2346899999997643221
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++..+|++++|+|++++-+... ..++..+..... .. |+++|.||+|....
T Consensus 92 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~--piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 92 RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-ST--RVLLIGCKTDLRTD 146 (214)
T ss_dssp GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TS--EEEEEEECGGGGGC
T ss_pred HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CC--CEEEEEEChhhccc
Confidence 2245778999999999986655444 355666666533 33 99999999998653
No 129
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.47 E-value=2.2e-13 Score=109.86 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=72.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+|+|++|+|||||+|.+++...... . ..+.+.........+ .+ ..+.|+||||...+ ...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 94 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSER-Q-GSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------RTI 94 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------HHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCC-C-CCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HHH
Confidence 37999999999999999999997663211 1 111112222233344 33 47899999997532 112
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++..+|++++|+|++++.+... ..++..+....... .|+++|.||+|...
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~ 148 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSE 148 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCcccc
Confidence 2334678899999999974433222 24455555543233 38999999999864
No 130
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.47 E-value=1.3e-14 Score=116.93 Aligned_cols=118 Identities=20% Similarity=0.211 Sum_probs=72.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+|+|++|+|||||+|.|++........ .+.+.........+ .+ ..+.|+||||...+.....
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~--------- 100 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITS--------- 100 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSC---------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHH---------
Confidence 4799999999999999999999866432211 12222233333444 34 4689999999776543222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|+.++.+... ..++..+...... ..|+++|+||+|....
T Consensus 101 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 101 --SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK 153 (199)
T ss_dssp --C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--
T ss_pred --HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc
Confidence 34678899999999975544333 2333434332222 2389999999998643
No 131
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.47 E-value=1.9e-13 Score=107.48 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=73.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC---ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
..+|+++|++|+|||||+|.+++...........+ .........+ .+ ..+.++||||...+....
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~~--------- 73 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG--LDFFLRRITL-PGNLNVTLQIWDIGGQTIGGKML--------- 73 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTT--SSEEEEEEEE-TTTEEEEEEEEECTTCCTTCTTH---------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCcee--EEEEEEEEEe-CCCCEEEEEEEECCCCccccchh---------
Confidence 47999999999999999999997664221111111 2222333444 33 579999999987543221
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~iil~nk~D~~~ 151 (285)
..++..+|++++|+|++++.+... ..++..+...... ...+++++|.||+|...
T Consensus 74 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 74 --DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp --HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred --hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 123567899999999975443322 2344444443211 01124889999999764
No 132
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.47 E-value=3.7e-13 Score=122.87 Aligned_cols=118 Identities=16% Similarity=0.218 Sum_probs=81.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeEEEEEEEeeCCc
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLKDGQ 69 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~ 69 (285)
..+|+++|++|+|||||+|.|++..... ......++|....+....+ .+.
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~ 111 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRA 111 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CCc
Confidence 4799999999999999999998652100 0011236677777777766 678
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccCeEEE
Q 023214 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIV 142 (285)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ii 142 (285)
.++|+||||+.++ .. .....+..+|++++|+|++++ +....+..+..+... +.+ |+++
T Consensus 112 ~~~iiDTPG~~~f-------~~----~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~---~iIv 176 (483)
T 3p26_A 112 NFTIVDAPGHRDF-------VP----NAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIH---NLII 176 (483)
T ss_dssp EEEEECCCCCGGG-------HH----HHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCC---CEEE
T ss_pred eEEEEECCCcHHH-------HH----HHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCC---cEEE
Confidence 9999999998642 12 222345678999999999755 345555555555443 432 7999
Q ss_pred EEeCCCCCCC
Q 023214 143 VFTGGDELED 152 (285)
Q Consensus 143 l~nk~D~~~~ 152 (285)
++||+|....
T Consensus 177 viNK~Dl~~~ 186 (483)
T 3p26_A 177 AMNKMDNVDW 186 (483)
T ss_dssp EEECGGGGTT
T ss_pred EEECcCcccc
Confidence 9999998763
No 133
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.46 E-value=5.6e-13 Score=117.08 Aligned_cols=125 Identities=15% Similarity=0.125 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
..|+|+|++|+|||||+|.|+|...+... ..+.|.......+.+ .+..+.++||||+... .+......+...+ .
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~--~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~--lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDT--KLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRG--IPPQIVDAFFVTL-S 253 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSS--CCGGGHHHHHHHH-H
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccC--CcccccCCEEEEEEE-CCEEEEEEeCCCchhc--CCHHHHHHHHHHH-H
Confidence 45999999999999999999998753222 123344444455666 6788999999998542 1222223333333 3
Q ss_pred ccCCccEEEEEEeCCCCC--CHHHHH-HHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRF--SQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~--~~~~~~-~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|.+++|+|++++. ...... +...+... +. ...|+++|.||+|..+.
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~-~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GV-SGKPILVTLNKIDKING 307 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC-CSCCEEEEEECGGGCCS
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc-CCCCEEEEEECCCCCCc
Confidence 456789999999987553 122222 23333332 31 12389999999998765
No 134
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.46 E-value=1.9e-13 Score=110.73 Aligned_cols=117 Identities=16% Similarity=0.097 Sum_probs=75.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
...+|+++|++|+|||||+|.+++.... .... .|....+ ...... ....+.|+||||...+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~---~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---------- 92 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYV---PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV---------- 92 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCC---CCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT----------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcC---CccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH----------
Confidence 3479999999999999999999986542 2111 1222222 222331 1346899999997643221
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++..+|++++|+|++++.+... ..++..+..... . .|+++|.||+|....
T Consensus 93 -~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 93 -RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTD 147 (205)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGC
T ss_pred -HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhccc
Confidence 1235778999999999975544333 244455555433 2 399999999998643
No 135
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.46 E-value=4.1e-13 Score=109.44 Aligned_cols=120 Identities=10% Similarity=0.175 Sum_probs=72.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
...+|+++|++|+|||||++.|++........ ....+.... + ....+.++||||+..+. ..+..++
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-~~~~~~~~~-----~-~~~~~~l~Dt~G~~~~~-------~~~~~~~ 76 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAAD-----Y-DGSGVTLVDFPGHVKLR-------YKLSDYL 76 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSCEEETT-----G-GGSSCEEEECCCCGGGT-------HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-ecCceEEEE-----e-eCceEEEEECCCcHHHH-------HHHHHHH
Confidence 34799999999999999999999876422111 111122111 1 35678999999986532 1222233
Q ss_pred hhccCCccEEEEEEeCC-C--CCCHHHHHHHHHHHHHhC--ccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVR-S--RFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~-~--~~~~~~~~~l~~~~~~~~--~~~~~~~iil~nk~D~~~~ 152 (285)
......+|++++|+|+. + .+.... .++..+..... .....|+++|+||+|....
T Consensus 77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 77 KTRAKFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHGGGEEEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HhccccCCEEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 22233479999999997 3 333333 33333322211 0112389999999998765
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.46 E-value=5.5e-14 Score=127.63 Aligned_cols=120 Identities=23% Similarity=0.320 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCC-CCCCCcHHHH-HHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFVG-KEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~-~~~~~~~ 97 (285)
.+|+|+|++|+|||||+|.|++....... ...++|.......+.+ .+..+.|+||||+. .+....+..+ ....
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs-~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~--- 318 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTL--- 318 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHH---
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccC-CCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHH---
Confidence 79999999999999999999987532121 1234455555555666 78889999999997 5432211110 1111
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+..+|++++|+|++++.+..+...++.+ .. .|+++|+||+|....
T Consensus 319 -~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~---~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 319 -QEIEKADIVLFVLDASSPLDEEDRKILERI----KN---KRYLVVINKVDVVEK 365 (482)
T ss_dssp -HHHHHCSEEEEEEETTSCCCHHHHHHHHHH----TT---SSEEEEEEECSSCCC
T ss_pred -HHhhcccEEEEEecCCCCCCHHHHHHHHHh----cC---CCEEEEEECcccccc
Confidence 224567999999999877787766554433 22 289999999998653
No 137
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.46 E-value=1.9e-13 Score=107.67 Aligned_cols=110 Identities=19% Similarity=0.134 Sum_probs=69.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++..... ..+...... ...... .+ ..+.++||||... .
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~-----~---------- 67 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQY--KKEMLV-DGQTHLVLIREEAGAPD-----A---------- 67 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEE--EEEEEE-TTEEEEEEEEECSSSCC-----H----------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeE--EEEEEE-CCEEEEEEEEECCCCch-----h----------
Confidence 799999999999999999999766432 111111111 122333 33 4578999999763 1
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc-cccCeEEEEEeCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGK-KIFDYMIVVFTGGDEL 150 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~-~~~~~~iil~nk~D~~ 150 (285)
.++..+|++++|+|++++-+.... .++.++...... ....|+++|.||.|..
T Consensus 68 -~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 68 -KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp -HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred -HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 123457999999999755444433 333344444321 1224999999999974
No 138
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.46 E-value=7e-13 Score=104.94 Aligned_cols=117 Identities=21% Similarity=0.190 Sum_probs=72.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
..+|+++|++|+|||||+|.|++...... ..+ .+.......... .+ ..+.|+||||...+. . +
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~----~--- 82 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFVED-YEP--TKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----A----I--- 82 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCT--TCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----H----H---
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCc-CCC--ccceEEEEEEEE-CCEEEEEEEEECCCCcccH----H----H---
Confidence 47999999999999999999997663221 111 111111222333 33 368999999976531 1 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++..+|++++|+|+.++.+... ..++..+..... ....|+++|+||+|...
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 83 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 137 (187)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGG
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 1122445799999999974433222 344455555433 11238999999999764
No 139
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.46 E-value=1.3e-13 Score=108.85 Aligned_cols=115 Identities=20% Similarity=0.131 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE-EEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|++|+|||||++.+++.... ....+ |....+. .... .....+.++||||...+....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~---t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------- 73 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVP---TVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLR----------- 73 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTTTTG-----------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCC---eeeeeEEEEEEECCEEEEEEEEECCCChhhhhhH-----------
Confidence 79999999999999999999976532 21111 1111110 1111 013446799999987643221
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...+..+|++++|+|++++.+.... .++..+..... . .|+++|+||+|....
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 74 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-G--VPIVLVGTKLDLRDD 127 (182)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhhcC
Confidence 2346788999999999755443332 35555555433 2 399999999997654
No 140
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.46 E-value=1.1e-12 Score=118.12 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=82.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc--cc------------cc-----------------CCCCcceeEEEEEEEeeC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAF--KS------------RA-----------------SSSGVTSTCEMQRTVLKD 67 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~--~~------------~~-----------------~~~~~t~~~~~~~~~~~~ 67 (285)
..+|+++|+.++|||||+|.|++.... .. +. ...+.|....+..... .
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~-~ 102 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-A 102 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-S
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-C
Confidence 479999999999999999999865310 00 00 0124566655555555 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCC
Q 023214 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (285)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~ 147 (285)
+..++|+||||+.++ ...+. ..+..+|++++|+|+.++.....+..+..+... +.+ ++++++||+
T Consensus 103 ~~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~~~---~iIvviNK~ 167 (434)
T 1zun_B 103 KRKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GIK---HIVVAINKM 167 (434)
T ss_dssp SEEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---EEEEEEECT
T ss_pred CceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEEcC
Confidence 778999999997643 12222 235678999999999878888777777666543 432 799999999
Q ss_pred CCCCC
Q 023214 148 DELED 152 (285)
Q Consensus 148 D~~~~ 152 (285)
|....
T Consensus 168 Dl~~~ 172 (434)
T 1zun_B 168 DLNGF 172 (434)
T ss_dssp TTTTS
T ss_pred cCCcc
Confidence 98753
No 141
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.45 E-value=1.9e-13 Score=108.68 Aligned_cols=123 Identities=20% Similarity=0.160 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+++|++|+|||||+|.+++... ..... .++|..... ..+ . .+.++||||+.+....+......+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~-~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKR-PGVTRKIIE--IEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSS-TTCTTSCEE--EEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCCC-CCccceeEE--Eec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 5899999999999999999998864 22222 233433222 222 2 689999999876554443322333322222
Q ss_pred c----cCCccEEEEEEeCCCCCCHHHHHHH---------HHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 A----KDGIHAVLVVFSVRSRFSQEEEAAL---------HSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~----~~~~~~~l~v~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+ ...++.+++|+|.. .+......+. ..+....... .|+++|.||+|....
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSC
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCc
Confidence 2 34556777777764 2211101111 1112111112 389999999998765
No 142
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.45 E-value=1.1e-12 Score=119.49 Aligned_cols=117 Identities=18% Similarity=0.283 Sum_probs=80.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc---c--cccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAF---K--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~---~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (285)
..+|+++|+.++|||||++.|++.... + ......++|....+....+ .+..++++||||+.+ +
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~-----------~ 86 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD-----------L 86 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH-----------H
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHH-----------H
Confidence 379999999999999999999987611 0 1112345677666666666 678999999999632 2
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.......+..+|++++|+|+.+...+.....+..+... +- |.++++||+|....
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~i----p~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-NI----PIIVVITKSDNAGT 140 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CBCEEEECTTSSCH
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc-CC----CEEEEEECCCcccc
Confidence 22333446788999999999877888888777766553 42 67999999998753
No 143
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.45 E-value=1e-13 Score=128.10 Aligned_cols=134 Identities=20% Similarity=0.318 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee-EEEE------------------------------------
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQ------------------------------------ 61 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~-~~~~------------------------------------ 61 (285)
.++|+|+|.+|+|||||+|+|+|........+....|.. ....
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 479999999999999999999998753111111111111 0000
Q ss_pred EEEeeCC---ceEEEEeCCCCCCCCCCcHHHHHH--HHHHHhhccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCcc
Q 023214 62 RTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKE--IVKCIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKK 135 (285)
Q Consensus 62 ~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~l~~~~~~~~~~ 135 (285)
...+ .+ ..++||||||+.+.... .+.+. +......++..+|++++|+|+.. .++..+..++..+... .
T Consensus 145 ~~~~-~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~ 218 (550)
T 2qpt_A 145 CAQL-PNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---E 218 (550)
T ss_dssp EEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---G
T ss_pred EEec-cccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---C
Confidence 0000 00 36899999999863211 00000 11222233456799999999975 3667766666655432 1
Q ss_pred ccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214 136 IFDYMIVVFTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 136 ~~~~~iil~nk~D~~~~~~~~l~~~l~ 162 (285)
.|+++|+||+|.... ..+...+.
T Consensus 219 --~pvilVlNK~Dl~~~--~el~~~~~ 241 (550)
T 2qpt_A 219 --DKIRVVLNKADMVET--QQLMRVYG 241 (550)
T ss_dssp --GGEEEEEECGGGSCH--HHHHHHHH
T ss_pred --CCEEEEEECCCccCH--HHHHHHHH
Confidence 289999999998865 55554443
No 144
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=2e-13 Score=109.52 Aligned_cols=115 Identities=22% Similarity=0.166 Sum_probs=71.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
..+|+++|++|+|||||+|.+++...... ..+ |....+ ..... . ...+.++||||... .. .
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~---t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~----~~-~------ 91 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWE-YDP---TLESTYRHQATI-DDEVVSMEILDTAGQED----TI-Q------ 91 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSC-CCT---TCCEEEEEEEEE-TTEEEEEEEEECCCCCC----CH-H------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCC---CCCceEEEEEEE-CCEEEEEEEEECCCCCc----cc-c------
Confidence 48999999999999999999998764222 111 111111 12233 3 34589999999875 11 1
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|...
T Consensus 92 -~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 92 -REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDH 146 (196)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGG
T ss_pred -hhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECccccc
Confidence 1122345699999999974433322 234444544332 11238999999999764
No 145
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.45 E-value=9.8e-12 Score=117.64 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC---------------------------------------------
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG--------------------------------------------- 53 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~--------------------------------------------- 53 (285)
.++|+|+|..++|||||+|+|+|...++.+....+
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 37999999999999999999999876554432110
Q ss_pred ----cceeEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhc-cCCccEEEEEEeCCCCCCHHHH-HHH
Q 023214 54 ----VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMA-KDGIHAVLVVFSVRSRFSQEEE-AAL 125 (285)
Q Consensus 54 ----~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~-~~l 125 (285)
.+...-...+..+....++||||||+..... .+.++...+...+..+ ...+|++++|+|+...++..+. ..+
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll 210 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 210 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHH
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHH
Confidence 0111111222232355689999999986321 1222222222222222 2567999999999767776665 344
Q ss_pred HHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 126 HSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 126 ~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+.. . ..|+++|+||+|....
T Consensus 211 ~~L~~---~--g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 211 KEVDP---Q--GQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHCT---T--CSSEEEEEECTTSSCT
T ss_pred HHHHh---c--CCCEEEEEeCcccCCc
Confidence 43332 1 2389999999999865
No 146
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.4e-12 Score=113.27 Aligned_cols=115 Identities=12% Similarity=0.025 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|+|++|+|||||++.|++...... .+|....+..... .+..+.|+||||...+... ...
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~-----------~~~ 228 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKIRPL-----------WRH 228 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CCS-----------HHH
T ss_pred ceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhHHHH-----------HHH
Confidence 6999999999999999999998764221 1244444555555 6788999999997654322 122
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
++..+|++++|+|++++-+.... ..+..+..... ....|++||+||+|....
T Consensus 229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred HhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcc
Confidence 35678999999999755554332 22222221111 112389999999998765
No 147
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.45 E-value=3.2e-13 Score=109.61 Aligned_cols=114 Identities=20% Similarity=0.134 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCC-CCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS-SGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
.+|+++|++|+|||||++.+++.... ....+ .+... ...... .+ ..+.++||||...+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~~~----------- 73 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNF---SANVAV-DGQIVNLGLWDTAGQEDYSRL----------- 73 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCE---EEEEEC-SSCEEEEEEECCCCCCCCCC------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeE---EEEEEE-CCEEEEEEEEECCCcHHHHHH-----------
Confidence 89999999999999999999976532 22111 11111 122233 33 47899999998765322
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++..+|++++|+|+.++-+.... .++..+....+ . .|+++|+||.|....
T Consensus 74 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 74 RPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLRDD 128 (212)
T ss_dssp -CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC
T ss_pred HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeCHHhhhC
Confidence 12357789999999999754443332 45555555433 2 399999999997654
No 148
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.44 E-value=5e-13 Score=117.20 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=85.8
Q ss_pred ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 023214 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK 91 (285)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 91 (285)
|.+......+|+|||.+++|||||+|+|+|..... ....++|..+......+ .+..+.++||||+..........+.
T Consensus 65 f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~ 141 (376)
T 4a9a_A 65 FDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGK 141 (376)
T ss_dssp TTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHH
T ss_pred ceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHH
Confidence 34444444799999999999999999999977533 23456788888888888 8899999999999754333333444
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc-ccCeEEEEEeCCCCC
Q 023214 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK-IFDYMIVVFTGGDEL 150 (285)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~iil~nk~D~~ 150 (285)
.+...+ ..+|++++|+|+.+++.. ...+..-...++.. ...|.++++||.|..
T Consensus 142 ~~l~~i----~~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 142 QVIAVA----RTCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHH----HHCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHH----HhcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 444443 446999999998754322 22222222222321 123788999999964
No 149
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1e-12 Score=122.79 Aligned_cols=118 Identities=15% Similarity=0.221 Sum_probs=82.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccc-----------------------------CCCCcceeEEEEEEEeeCCc
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA-----------------------------SSSGVTSTCEMQRTVLKDGQ 69 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 69 (285)
..+|+++|++|+|||||+|.|++........ ...|+|....+....+ .+.
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~~ 245 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRA 245 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SSC
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CCc
Confidence 4799999999999999999999764311100 0136677776777777 688
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccCeEEE
Q 023214 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIV 142 (285)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ii 142 (285)
.++||||||+.+ +.......+..+|++++|+|++.+ +.......+..+.. ++.+ ++++
T Consensus 246 ~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~---~iIV 310 (611)
T 3izq_1 246 NFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIH---NLII 310 (611)
T ss_dssp EEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCC---EEEE
T ss_pred eEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCC---eEEE
Confidence 999999999864 223344567789999999999642 23344444444433 2422 7999
Q ss_pred EEeCCCCCCC
Q 023214 143 VFTGGDELED 152 (285)
Q Consensus 143 l~nk~D~~~~ 152 (285)
++||+|....
T Consensus 311 VvNKiDl~~~ 320 (611)
T 3izq_1 311 AMNKMDNVDW 320 (611)
T ss_dssp EEECTTTTTT
T ss_pred EEecccccch
Confidence 9999998763
No 150
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.44 E-value=5.5e-13 Score=107.06 Aligned_cols=122 Identities=23% Similarity=0.149 Sum_probs=72.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (285)
....+|+|+|++|+|||||+|.+++.......... .+.......+.+ .+ ..+.++||||...+. . .+.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~---~----~~~ 90 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE--NPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG---G----WLR 90 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT--SCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG---H----HHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC--cccceEEEEEEE-CCEEEEEEEEecCCCccch---h----hhH
Confidence 34589999999999999999999865432111111 122222223333 33 357789999986421 1 111
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
. .++..+|++++|+|++++-+... ..++..+..... ....|+++|.||+|....
T Consensus 91 ~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 91 D---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARS 145 (195)
T ss_dssp H---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTT
T ss_pred H---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhcccc
Confidence 1 22446799999999975433322 234444444322 112489999999998643
No 151
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.44 E-value=2.3e-13 Score=110.84 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=70.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEE--EEEEEeeC-----------CceEEEEeCCCCCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLKD-----------GQVVNVIDTPGLFDFSAG 85 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~~~liDtpG~~~~~~~ 85 (285)
..+|+|+|++|+|||||+|.|++...... ...|.... ...+.+.. ...+.|+||||..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----- 95 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE----- 95 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-----
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-----
Confidence 37999999999999999999998664211 11122222 12222311 3469999999942
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccCeEEEEEeCCCCCC
Q 023214 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (285)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iil~nk~D~~~ 151 (285)
.+......++..+|++++|+|+.++.+... ...++....... ...|+++|+||+|...
T Consensus 96 ------~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 96 ------RFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp ------HHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred ------hHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 222233445678899999999974432222 112232222111 2348999999999764
No 152
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.43 E-value=7.7e-13 Score=105.39 Aligned_cols=116 Identities=25% Similarity=0.179 Sum_probs=70.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
..+|+|+|++|+|||||++.+++... ..... .|....+ ..... .+ ..+.|+||||...+... .
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~--------~- 86 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYD---PNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRNC--------E- 86 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCC---TTCCEEEEEEEEE-TTEEEEEEEEECCC---CCCT--------H-
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC-CcccC---CCccceeeEEEEE-CCEEEEEEEEECCCCCcchhH--------H-
Confidence 37999999999999999999997763 22221 1222221 12222 33 45889999998754321 1
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~iil~nk~D~~~ 151 (285)
.++..+|++++|+|++++-+... ..++..+...... ....|+++|.||+|...
T Consensus 87 ---~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 87 ---RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp ---HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred ---HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 12456899999999975443333 2344445443210 01238999999999753
No 153
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.42 E-value=3.7e-14 Score=129.91 Aligned_cols=115 Identities=17% Similarity=0.273 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
++|+++|++|+|||||++.|++...... ...++|.....+...+..+..++||||||+.++..... .
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~-----------~ 71 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA-----------R 71 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB-----------S
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH-----------H
Confidence 7999999999999999999997664322 23455665555555553467899999999887654322 3
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+|+.++..+.....+..+... .. |+++++||+|....
T Consensus 72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~v--PiIVViNKiDl~~~ 119 (537)
T 3izy_P 72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDA---HV--PIVLAINKCDKAEA 119 (537)
T ss_dssp SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---TC--CEEECCBSGGGTTT
T ss_pred HHccCCEEEEEEECCCCccHHHHHHHHHHHHc---CC--cEEEEEeccccccc
Confidence 46678999999999888888888777766543 22 89999999998643
No 154
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.42 E-value=1.2e-12 Score=120.23 Aligned_cols=117 Identities=16% Similarity=0.197 Sum_probs=79.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc--c------------------cCCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--R------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG 78 (285)
..+|+++|++|+|||||++.|++...... + ....++|.........+ .+..++||||||
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTPG 91 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTPG 91 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECCC
Confidence 38999999999999999999986421100 0 01223444444455556 678899999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+.++.. ....++..+|++++|+|+.++........+..+... .. |+++++||+|....
T Consensus 92 ~~df~~-----------~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~---~i--piivviNK~Dl~~~ 149 (529)
T 2h5e_A 92 HEDFSE-----------DTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR---DT--PILTFMNKLDRDIR 149 (529)
T ss_dssp STTCCH-----------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT---TC--CEEEEEECTTSCCS
T ss_pred ChhHHH-----------HHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc---CC--CEEEEEcCcCCccc
Confidence 987631 122345678999999999877777766666554331 22 89999999998765
No 155
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.42 E-value=1.8e-12 Score=116.84 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=82.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------cCCCCcceeEEEEEEEeeCC
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLKDG 68 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~ 68 (285)
...+|+++|+.++|||||++.|++....... ....++|....+....+ .+
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~~ 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-EK 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-CC
Confidence 3489999999999999999999755321100 01146788777777777 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhCccccCeEE
Q 023214 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFDYMI 141 (285)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~i 141 (285)
..++|+||||+.++ .......+..+|++++|+|+.++.. +..+..+..+... +.+ +++
T Consensus 95 ~~~~iiDTPGh~~f-----------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~v~---~iI 159 (439)
T 3j2k_7 95 KHFTILDAPGHKSF-----------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVK---HLI 159 (439)
T ss_pred eEEEEEECCChHHH-----------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-CCC---eEE
Confidence 89999999997543 1222233557899999999976543 4555555555443 432 589
Q ss_pred EEEeCCCCCC
Q 023214 142 VVFTGGDELE 151 (285)
Q Consensus 142 il~nk~D~~~ 151 (285)
+++||+|...
T Consensus 160 vviNK~Dl~~ 169 (439)
T 3j2k_7 160 VLINKMDDPT 169 (439)
T ss_pred EEeecCCCcc
Confidence 9999999864
No 156
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.42 E-value=9.2e-13 Score=104.72 Aligned_cols=112 Identities=22% Similarity=0.165 Sum_probs=71.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (285)
....+|+|+|++|+|||||+|.+++.... ....+ |.......+.+ .+ ..+.++||||...+.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~-~~~~~---t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~----------- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV-QEESP---EGGRFKKEIVV-DGQSYLLLIRDEGGPPELQ----------- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC-CCCCT---TCEEEEEEEEE-TTEEEEEEEEECSSSCCHH-----------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCC---CcceEEEEEEE-CCEEEEEEEEECCCChhhh-----------
Confidence 34589999999999999999999876632 22222 21111223334 44 346789999976421
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
++..+|++++|+|++++-+... ..++..+..... ....|++++.||+|..
T Consensus 82 -----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 82 -----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS 132 (184)
T ss_dssp -----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred -----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 2345699999999975544444 344444443311 1234899999999974
No 157
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.42 E-value=3.4e-12 Score=113.64 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc------ccc--------ccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRA------FKS--------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~------~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (285)
.+|+++|+.++|||||++.|++... +.. .....+.|....+..... .+..++|+||||+.+
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~---- 78 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD---- 78 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH----
Confidence 7999999999999999999997421 000 001235566655544444 568899999999643
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCe-EEEEEeCCCCCC
Q 023214 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELE 151 (285)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~iil~nk~D~~~ 151 (285)
+.......+..+|++++|+|+.+......+..+..+... +- | +++++||+|...
T Consensus 79 -------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~v----p~iivviNK~Dl~~ 133 (397)
T 1d2e_A 79 -------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GV----EHVVVYVNKADAVQ 133 (397)
T ss_dssp -------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCS
T ss_pred -------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CeEEEEEECcccCC
Confidence 222334456789999999999878888887777666543 32 5 789999999875
No 158
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.41 E-value=4.3e-13 Score=106.52 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=65.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeEEEEEEEe----eCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~-~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (285)
.+|+|+|++|+|||||++.+++.. .+..... .+............ .....+.++||||...+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------- 71 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQS-ATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS---------- 71 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHHHHHT----------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcc-eeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH----------
Confidence 689999999999999999999863 2222111 11111211111111 1245789999999643211
Q ss_pred HHHhhccCCccEEEEEEeCCCCCC-HH-HHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 95 KCIGMAKDGIHAVLVVFSVRSRFS-QE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
....++.+.+++++|+|++++.+ .. -..++..+..... . .|+++|.||+|....
T Consensus 72 -~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 72 -THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-S--SPVILVGTHLDVSDE 127 (184)
T ss_dssp -TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-T--CEEEEEEECGGGCCH
T ss_pred -hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-C--CcEEEEEECCCcccc
Confidence 11122345689999999865422 11 1234444444322 2 389999999997643
No 159
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.41 E-value=1.6e-12 Score=123.27 Aligned_cols=118 Identities=25% Similarity=0.363 Sum_probs=81.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC---Cccccc---------cc----CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 18 GERTVVLVGRTGNGKSATGNSILG---RRAFKS---------RA----SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g---~~~~~~---------~~----~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
...+|+|+|++|+|||||+|.|++ ...... .. ...++|.........+ .+..++||||||+.+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHVD 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCcc
Confidence 348999999999999999999994 221000 00 0134555555566666 688899999999987
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+.. ....+ +..+|++++|+|+.++.+..+...+..+... + . |+++++||+|....
T Consensus 88 f~~-------~~~~~----l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-~--~--p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FTV-------EVERS----LRVLDGAVTVLDAQSGVEPQTETVWRQATTY-G--V--PRIVFVNKMDKLGA 142 (693)
T ss_dssp CCH-------HHHHH----HHHCSEEEEEEETTTBSCHHHHHHHHHHHHT-T--C--CEEEEEECTTSTTC
T ss_pred hHH-------HHHHH----HHHCCEEEEEECCCCCCcHHHHHHHHHHHHc-C--C--CEEEEEECCCcccc
Confidence 531 12222 3446999999999878888888888776553 2 2 89999999998765
No 160
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.41 E-value=2.5e-12 Score=121.93 Aligned_cols=119 Identities=22% Similarity=0.302 Sum_probs=80.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC---Ccccc----ccc---------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 023214 18 GERTVVLVGRTGNGKSATGNSILG---RRAFK----SRA---------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g---~~~~~----~~~---------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (285)
...+|+|+|+.|+|||||++.|+. ..... .+. ...++|+........+ .+..++||||||+.+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHVD 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSSTT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCccc
Confidence 348999999999999999999983 21000 000 0234566666666666 688899999999976
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
+. .....+ +..+|++++|+|+.++.+......+..+... + . |+++++||+|....+
T Consensus 90 f~-------~~~~~~----l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-~--~--p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 90 FT-------IEVERS----MRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-K--V--PRIAFANKMDKTGAD 145 (691)
T ss_dssp CH-------HHHHHH----HHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T--C--CEEEEEECTTSTTCC
T ss_pred hH-------HHHHHH----HHHCCEEEEEEECCCCcchhhHHHHHHHHHc-C--C--CEEEEEECCCcccCC
Confidence 42 222223 3456999999999878888888777766553 2 2 899999999988653
No 161
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.41 E-value=1.3e-12 Score=117.64 Aligned_cols=117 Identities=22% Similarity=0.304 Sum_probs=74.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc-ccccc----------------------------cCCCCcceeEEEEEEEeeCCc
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRR-AFKSR----------------------------ASSSGVTSTCEMQRTVLKDGQ 69 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~-~~~~~----------------------------~~~~~~t~~~~~~~~~~~~~~ 69 (285)
..+|+++|+.|+|||||++.|++.. .+... ....++|....+....+ .+.
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~~ 84 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKY 84 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSC
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CCe
Confidence 3799999999999999999998642 11100 01245666666666666 678
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccCeEEE
Q 023214 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIV 142 (285)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ii 142 (285)
.++|+||||+.++. ......+..+|++++|+|+.+. +....+..+..+... +.+ ++++
T Consensus 85 ~~~iiDtpG~~~f~-----------~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~-~~~---~iiv 149 (435)
T 1jny_A 85 FFTIIDAPGHRDFV-----------KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-GLD---QLIV 149 (435)
T ss_dssp EEEECCCSSSTTHH-----------HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-TCT---TCEE
T ss_pred EEEEEECCCcHHHH-----------HHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CCC---eEEE
Confidence 89999999987531 1233456789999999999754 333444554444432 422 6899
Q ss_pred EEeCCCCCC
Q 023214 143 VFTGGDELE 151 (285)
Q Consensus 143 l~nk~D~~~ 151 (285)
++||+|...
T Consensus 150 viNK~Dl~~ 158 (435)
T 1jny_A 150 AVNKMDLTE 158 (435)
T ss_dssp EEECGGGSS
T ss_pred EEEcccCCC
Confidence 999999876
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.40 E-value=1e-12 Score=117.32 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=81.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc-------cccc----c----cCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRR-------AFKS----R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~-------~~~~----~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (285)
..+|+++|+.|+|||||++.|++.. .+.. . ....+.|.......... .+..++|+||||+.++
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~f- 88 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY- 88 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG-
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHHH-
Confidence 3799999999999999999999731 0100 0 00124455544444544 5788999999998753
Q ss_pred CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCe-EEEEEeCCCCCC
Q 023214 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELE 151 (285)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~iil~nk~D~~~ 151 (285)
...+ ...+..+|++++|+|+.++........+..+... +- | +++++||+|...
T Consensus 89 ------~~~~----~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~i----p~iivviNK~Dl~~ 142 (405)
T 2c78_A 89 ------IKNM----ITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFMNKVDMVD 142 (405)
T ss_dssp ------HHHH----HHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCC
T ss_pred ------HHHH----HHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEECccccC
Confidence 1222 2335678999999999878888887777766653 32 5 889999999875
No 163
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.40 E-value=1.7e-13 Score=124.53 Aligned_cols=114 Identities=16% Similarity=0.253 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
++|+++|+.++|||||++.|++...... ...+.|.....+...+ .+..++|+||||+.++..... .
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~--e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~~-----------~ 70 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRSTKVASG--EAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMRA-----------R 70 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHHHHSBT--TBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSBC-----------S
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCccc--cCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHHH-----------H
Confidence 7999999999999999999987543221 1234555555555555 567899999999987654321 3
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+|+.++..+.....+..+... + . |+++++||+|....
T Consensus 71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~-~--v--PiIVviNKiDl~~~ 118 (501)
T 1zo1_I 71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKAA-Q--V--PVVVAVNKIDKPEA 118 (501)
T ss_dssp SSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT-T--C--CEEEEEECSSSSTT
T ss_pred HHhhCCEEEEEeecccCccHHHHHHHHHHHhc-C--c--eEEEEEEecccccc
Confidence 45678999999999777666666666655542 2 2 89999999998653
No 164
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.40 E-value=3.5e-13 Score=117.25 Aligned_cols=127 Identities=18% Similarity=0.141 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (285)
.+|+|+|.+|+|||||+|+|++...... .....|..+....+.+..+..++|+||||+.+.......+...+.+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i-- 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI-- 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH--
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH--
Confidence 3689999999999999999998764222 122344445555566633478999999997532111122333333333
Q ss_pred ccCCccEEEEEEeCCC---CCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 100 AKDGIHAVLVVFSVRS---RFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 100 ~~~~~~~~l~v~~~~~---~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+|++++|+|+++ +-+..+. .++..+......-...|+++|+||+|....
T Consensus 235 --~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 235 --ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp --HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred --HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 34689999999974 3333332 333444443111123489999999998753
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.39 E-value=1.7e-12 Score=104.44 Aligned_cols=116 Identities=19% Similarity=0.194 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+|+|++|+|||||++.|+|....... ....+.......+.+ .+. .+.++||||...+.....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~---------- 72 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITS---------- 72 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCH----------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhH----------
Confidence 79999999999999999999987642211 112222233344444 443 467899999764432211
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+..++++++|+|+.+..+.... .++..+...... ..|++++.||+|...
T Consensus 73 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 73 -AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRH 124 (199)
T ss_dssp -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred -HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECccccc
Confidence 124567999999998644443332 333444333222 238999999999753
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.39 E-value=1.2e-12 Score=121.56 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFDF 82 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtpG~~~~ 82 (285)
++|+++|++|+|||||++.|++..... ..+.+.|.........+. ....++|+||||+.++
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 799999999999999999999765322 112233333222222220 1125899999999887
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..... ..+..+|++++|+|+.+++.......+..+... + . |+++++||+|...
T Consensus 84 ~~~~~-----------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-~--v--PiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMY-R--T--PFVVAANKIDRIH 136 (594)
T ss_dssp TTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-T--C--CEEEEEECGGGST
T ss_pred HHHHH-----------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-C--C--eEEEEeccccccc
Confidence 54322 345678999999999888888888888776652 2 2 8999999999864
No 167
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.38 E-value=1.3e-11 Score=110.37 Aligned_cols=120 Identities=15% Similarity=0.265 Sum_probs=79.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeEEEEEEEee--------------C--------CceEEEE
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLK--------------D--------GQVVNVI 74 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~li 74 (285)
...+|+++|+.++|||||++.|+|...... .....+.|....+...... . ...++++
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 348999999999999999999997642111 1112345555444332220 0 1579999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
||||+.+ +...+......+|++++|+|+.++. .......+..+.. ++.. |+++++||+|....
T Consensus 87 DtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~---~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 87 DSPGHET-----------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGID---KIIIVQNKIDLVDE 150 (408)
T ss_dssp ECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCC---CEEEEEECTTSSCT
T ss_pred ECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCC---eEEEEEEccCCCCH
Confidence 9999532 2223334456789999999998666 6666666665543 3433 79999999998764
No 168
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.38 E-value=3.4e-13 Score=126.80 Aligned_cols=118 Identities=19% Similarity=0.311 Sum_probs=89.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc--ccC--------------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--RAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (285)
.++|+|+|+.++|||||...|+....... +.. ..|+|+.....+..| .+..++||||||+.||
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence 46899999999999999999862211100 000 016677777777778 7889999999999997
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
. .++.+. +..+|++++|+|+..++....+..|+.+... + . |.++++||+|....+
T Consensus 81 ~-------~Ev~ra----L~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-~--l--p~i~~INKmDr~~a~ 135 (638)
T 3j25_A 81 L-------AEVYRS----LSVLDGAILLISAKDGVQAQTRILFHALRKM-G--I--PTIFFINKIDQNGID 135 (638)
T ss_dssp H-------HHHHHH----HTTCSEEECCEESSCTTCSHHHHHHHHHHHH-T--C--SCEECCEECCSSSCC
T ss_pred H-------HHHHHH----HHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-C--C--CeEEEEeccccccCC
Confidence 3 334434 4556999999999889999999999988876 3 2 788999999988654
No 169
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=5e-12 Score=102.80 Aligned_cols=119 Identities=22% Similarity=0.148 Sum_probs=71.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
..+|+|+|.+|+|||||+|.++|... +.....+.+.+.. ...+.+ .+. .+.++||+|.... ...
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~--~~~i~~-~~~~~~l~~~Dt~g~~~~----------~~~ 103 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTY--ERTLMV-DGESATIILLDMWENKGE----------NEW 103 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEE--EEEEEE-TTEEEEEEEECCTTTTHH----------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeE--EEEEEE-CCeeeEEEEeecCCCcch----------hhh
Confidence 37899999999999999999997542 2222222232222 122333 443 4678999985420 111
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
....++..+|++++|+|++++-+.... .++..+..... ....|+++|.||+|+..
T Consensus 104 l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 104 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR 159 (211)
T ss_dssp HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGG
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhc
Confidence 223456788999999999754333332 23333332211 11248999999999763
No 170
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.38 E-value=6.1e-12 Score=112.50 Aligned_cols=119 Identities=18% Similarity=0.284 Sum_probs=79.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeEEEEEEEeeC----------------------CceEEEEe
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKD----------------------GQVVNVID 75 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~----------------------~~~~~liD 75 (285)
..+|+++|+.++|||||++.|+|..... ......+.|....+....+.. ...++++|
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 4799999999999999999999764211 111123456555444333210 15799999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
|||+.+ +...+......+|++++|+|+.++. .......+..+... +.. |+++++||+|....
T Consensus 90 tPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~---~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 90 APGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQK---NIIIAQNKIELVDK 152 (410)
T ss_dssp CSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH
T ss_pred CCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCC---cEEEEEECccCCCH
Confidence 999642 2222333445679999999998666 67777777666543 433 79999999998764
No 171
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.37 E-value=5e-12 Score=120.40 Aligned_cols=120 Identities=26% Similarity=0.337 Sum_probs=85.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccc-------c---------cCCCCcceeEEEEEEEeeC------CceEEEEe
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-------R---------ASSSGVTSTCEMQRTVLKD------GQVVNVID 75 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~-------~---------~~~~~~t~~~~~~~~~~~~------~~~~~liD 75 (285)
..++|+|+|+.++|||||..+|+-...... + -...++|+.....+..|.. +..++|||
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 347999999999999999999872221100 0 1123677777777777732 45799999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
|||+.||. .++.+++..+ |++++|+|+..++.......|+.+... + . |.++++||+|....+
T Consensus 92 TPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~-~--l--p~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 92 TPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY-G--V--PRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH-T--C--CEEEEEECSSSTTCC
T ss_pred CCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc-C--C--CeEEEEccccccCcc
Confidence 99999983 4455555444 999999999889999999999988775 2 3 899999999987653
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.37 E-value=4.4e-12 Score=114.87 Aligned_cols=116 Identities=20% Similarity=0.264 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc-cccc-------------cc---------------CCCCcceeEEEEEEEeeCCce
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR-AFKS-------------RA---------------SSSGVTSTCEMQRTVLKDGQV 70 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~-~~~~-------------~~---------------~~~~~t~~~~~~~~~~~~~~~ 70 (285)
.+|+++|+.++|||||+|.|++.. .+.. +. ...++|....+..... .+..
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~~~ 86 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKYQ 86 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CCce
Confidence 799999999999999999998642 1100 00 0135666666666666 6788
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhCccccCeEEEE
Q 023214 71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ-------EEEAALHSLQTLFGKKIFDYMIVV 143 (285)
Q Consensus 71 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~iil 143 (285)
++|+||||+.++ .......+..+|++++|+|+.++... ..+..+..+.. .+-+ +++++
T Consensus 87 ~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v~---~iivv 151 (458)
T 1f60_A 87 VTVIDAPGHRDF-----------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGVR---QLIVA 151 (458)
T ss_dssp EEEEECCCCTTH-----------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTCC---EEEEE
T ss_pred EEEEECCCcHHH-----------HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCCC---eEEEE
Confidence 999999997642 22233457789999999999744322 34444444333 2322 58999
Q ss_pred EeCCCCCC
Q 023214 144 FTGGDELE 151 (285)
Q Consensus 144 ~nk~D~~~ 151 (285)
+||+|...
T Consensus 152 iNK~Dl~~ 159 (458)
T 1f60_A 152 VNKMDSVK 159 (458)
T ss_dssp EECGGGGT
T ss_pred EEcccccc
Confidence 99999874
No 173
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.36 E-value=1.1e-11 Score=117.72 Aligned_cols=118 Identities=20% Similarity=0.301 Sum_probs=82.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc-ccc-cc--------------CCCCcceeEEEEEEEeeCC-------ceEEEEe
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRA-FKS-RA--------------SSSGVTSTCEMQRTVLKDG-------QVVNVID 75 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~-~~~-~~--------------~~~~~t~~~~~~~~~~~~~-------~~~~liD 75 (285)
..+|+|+|+.|+|||||++.|+.... +.. +. ...++|+........+ .+ ..++|||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINIID 88 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEEEe
Confidence 47999999999999999999974321 100 00 0235566666566666 44 7899999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCCC
Q 023214 76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
|||+.++. .+.. .++..+|++++|+|+.+.........+..+... + . |+++++||+|....+
T Consensus 89 TPG~~df~-------~~~~----~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~--i--p~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 89 TPGHVDFT-------IEVE----RSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-K--V--PRIAFVNKMDRMGAN 150 (704)
T ss_pred CCCccchH-------HHHH----HHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-C--C--CEEEEEeCCCccccc
Confidence 99998752 2222 234567999999999877777777777665432 2 2 899999999987653
No 174
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.36 E-value=3.9e-12 Score=118.17 Aligned_cols=118 Identities=20% Similarity=0.254 Sum_probs=73.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc-c------------cCCCCcceeEEEEEEEeeC----CceEEEEeCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-R------------ASSSGVTSTCEMQRTVLKD----GQVVNVIDTPGLFD 81 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~-~------------~~~~~~t~~~~~~~~~~~~----~~~~~liDtpG~~~ 81 (285)
..+|+++|+.|+|||||++.|++...... . ....+.|.........|.. +..++||||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 47999999999999999999985321000 0 0123556655555565531 35789999999876
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+ ..++...+ ..+|++++|+|+.++.+..+...+..+... .. |+++++||+|....
T Consensus 84 F-------~~ev~~~l----~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~i--piIvViNKiDl~~a 138 (599)
T 3cb4_D 84 F-------SYEVSRSL----AACEGALLVVDAGQGVEAQTLANCYTAMEM---DL--EVVPVLNKIDLPAA 138 (599)
T ss_dssp G-------HHHHHHHH----HHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TC--EEEEEEECTTSTTC
T ss_pred H-------HHHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CC--CEEEeeeccCcccc
Confidence 4 22333333 345999999999878888777776665542 22 89999999998765
No 175
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.36 E-value=6.9e-12 Score=114.94 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (285)
..+|+|+|.+|+|||||+|.|++... .. ...|....+..+.+ .+..+.|+||||...+.. ...
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~~----~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-----------~~~ 384 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-VT----TIPTVGFNVETVTY-KNVKFNVWDVGGQDKIRP-----------LWR 384 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CC----CCCCSSEEEEEEES-SSCEEEEEEECCCGGGSG-----------GGG
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CC----cCCccceeEEEEEe-CCEEEEEEECCCcHHHHH-----------HHH
Confidence 37999999999999999999998763 22 12355555566666 678999999999765422 123
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++..+|++++|+|++++-+.... .++..+..... ....|++||+||+|....
T Consensus 385 ~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 385 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPDA 438 (497)
T ss_dssp GGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG-GTTCEEEEEEECCSSSSC
T ss_pred HHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhh-cCCCcEEEEEECCCCCcC
Confidence 457889999999999755443332 22222222111 112499999999998654
No 176
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.36 E-value=9.3e-12 Score=99.46 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCce--EEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV--VNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+|+|++|+|||||++.|+|...+... ..+++.......+.+ .+.. +.++||||...+.....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~---------- 96 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITS---------- 96 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCH----------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhH----------
Confidence 69999999999999999999987753221 122233333344445 5544 45699999875433222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
..+..++++++|+|..+..+... ..++..+...... ..+++++.||.|...
T Consensus 97 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 97 -AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRH 148 (191)
T ss_dssp -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred -HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 12456789999999864333222 1233333332222 238999999999753
No 177
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.36 E-value=5.2e-12 Score=117.20 Aligned_cols=118 Identities=20% Similarity=0.302 Sum_probs=76.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc-cc-c-----------cCCCCcceeEEEEEEEee--C--CceEEEEeCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAF-KS-R-----------ASSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD 81 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~-~~-~-----------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtpG~~~ 81 (285)
..+|+++|+.++|||||++.|++.... .. + ....++|.........|. . ...++||||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 379999999999999999999753210 00 0 001344554444445442 1 25688999999986
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+. .++.+. +..+|++++|+|+.++.+......+..+... .. |+++++||+|....
T Consensus 86 F~-------~ev~r~----l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~i--piIvviNKiDl~~a 140 (600)
T 2ywe_A 86 FS-------YEVSRA----LAACEGALLLIDASQGIEAQTVANFWKAVEQ---DL--VIIPVINKIDLPSA 140 (600)
T ss_dssp GH-------HHHHHH----HHTCSEEEEEEETTTBCCHHHHHHHHHHHHT---TC--EEEEEEECTTSTTC
T ss_pred HH-------HHHHHH----HHhCCEEEEEEECCCCccHHHHHHHHHHHHC---CC--CEEEEEeccCcccc
Confidence 42 233333 3466999999999888888887777665542 22 89999999998765
No 178
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.36 E-value=2.2e-12 Score=115.10 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=74.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc-ccC------------CCCcceeEEEEEEEe----eCCceEEEEeCCCCCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-RAS------------SSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFD 81 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~-~~~------------~~~~t~~~~~~~~~~----~~~~~~~liDtpG~~~ 81 (285)
..+|+++|++|+|||||+|.|++...... +.. ....+.........+ .....++++||||+.+
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~ 87 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV 87 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH
Confidence 48999999999999999999998542110 000 000000000000000 0125789999999754
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+ ...+. ..+..+|++++|+|+.++. .......+..+... +.. |+++++||+|....
T Consensus 88 ~-------~~~~~----~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~---~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 88 L-------MATML----SGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVK---NLIIVQNKVDVVSK 144 (403)
T ss_dssp G-------HHHHH----HHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH
T ss_pred H-------HHHHH----HHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCC---CEEEEEECccccch
Confidence 2 22222 3346789999999998776 56666676666554 433 89999999998765
No 179
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.35 E-value=3.6e-12 Score=113.15 Aligned_cols=91 Identities=15% Similarity=0.069 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEe--------------------eC---CceEEEEeC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------KD---GQVVNVIDT 76 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~liDt 76 (285)
.+|+|+|.+|+|||||+|+|+|.....+. ..++|.........+ .. ...+.++||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~--~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIAN--YPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 37999999999999999999988732111 122333322222110 01 246899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC
Q 023214 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR 116 (285)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~ 116 (285)
||+...... .+.+...+...+..+|++++|+|+.+.
T Consensus 79 pG~~~~a~~----~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhh----hhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 999743211 122333334567889999999999643
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.35 E-value=8.7e-12 Score=117.79 Aligned_cols=120 Identities=27% Similarity=0.305 Sum_probs=84.0
Q ss_pred ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc--ccccC--------------CCCcceeEEEEEEEeeCCceEEEEe
Q 023214 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF--KSRAS--------------SSGVTSTCEMQRTVLKDGQVVNVID 75 (285)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liD 75 (285)
+.+..+ .+|+|+|++|+|||||++.|++.... ..+.. ..+++.........+ .+..++|+|
T Consensus 4 ~~~~~~--~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliD 80 (665)
T 2dy1_A 4 EGGAMI--RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLD 80 (665)
T ss_dssp --CCCE--EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEE
T ss_pred CccCCC--cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEe
Confidence 344556 89999999999999999999954322 01100 124455555555555 678899999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
|||+.++ ...+..+ +..+|++++|+|+.+.++......+..+... + . |+++++||+|..
T Consensus 81 TpG~~~f-------~~~~~~~----l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~--i--p~ilv~NKiD~~ 139 (665)
T 2dy1_A 81 APGYGDF-------VGEIRGA----LEAADAALVAVSAEAGVQVGTERAWTVAERL-G--L--PRMVVVTKLDKG 139 (665)
T ss_dssp CCCSGGG-------HHHHHHH----HHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T--C--CEEEEEECGGGC
T ss_pred CCCccch-------HHHHHHH----HhhcCcEEEEEcCCcccchhHHHHHHHHHHc-c--C--CEEEEecCCchh
Confidence 9998754 1223333 3356899999999878998888888777653 3 2 899999999987
No 181
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.34 E-value=5.2e-12 Score=111.18 Aligned_cols=102 Identities=16% Similarity=0.241 Sum_probs=75.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+++|+.++|||||++.|+ ..++|....+....+ .+..++++||||+.++ ...+.. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~~----~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLIT----A 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHHH----H
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHHH----H
Confidence 89999999999999999998 124455555555656 6778999999998764 122222 2
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe-CCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDE 149 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n-k~D~ 149 (285)
+..+|++++|+| ........+..+..+... +.+ .+++++| |+|.
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-~i~---~~ivvvNNK~Dl 125 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDLL-GFK---HGIIALTRSDST 125 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-TCC---EEEEEECCGGGS
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-CCC---eEEEEEEeccCC
Confidence 356799999999 777777777777766553 432 3378888 9998
No 182
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.01 E-value=1.2e-13 Score=111.51 Aligned_cols=118 Identities=18% Similarity=0.067 Sum_probs=72.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (285)
...+|+++|++|+|||||++.+++...... ..+. +........... ....+.++||||...+.. .
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~ 94 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE-YIPT--VFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-----------L 94 (204)
Confidence 348999999999999999999987653221 1111 111001111220 234566999999764321 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
...++..+|++++|+|++++.+..+. .++..+..... ..|+++|+||+|....
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 149 (204)
Confidence 22346678999999998655444432 44455544322 2389999999998754
No 183
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.32 E-value=4.4e-12 Score=101.46 Aligned_cols=119 Identities=22% Similarity=0.158 Sum_probs=68.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK 95 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (285)
..+|+|+|++|+|||||+|.++|... +.....+.+.+.. ...+.+ .+. .+.++||+|........
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~--------- 73 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTY--ERTLMV-DGESATIILLDMWENKGENEWL--------- 73 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEE--EEEEEE-TTEEEEEEEECCCCC----CTT---------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEE--EEEEEE-CCeEEEEEEEEeccCcchhhhH---------
Confidence 37999999999999999999996432 2221112222221 122334 443 46789999965421100
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccCeEEEEEeCCCCCC
Q 023214 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~iil~nk~D~~~ 151 (285)
...++..+|++++|+|++++-+.... .++..+..... ....|+++|.||+|...
T Consensus 74 -~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 74 -HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR 128 (192)
T ss_dssp -GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGG
T ss_pred -HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhc
Confidence 01224456999999999755443332 33444444321 11238999999999753
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.32 E-value=7.6e-12 Score=111.38 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=80.3
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 86 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 86 (285)
..++++++..+ ..|+|+|+||||||||+|+|++......+. ...|.......+.+.....++++||||+.+.....
T Consensus 147 ~~~i~lelk~g--~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~--~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~ 222 (416)
T 1udx_A 147 KRRLRLELMLI--ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY--PFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG 222 (416)
T ss_dssp EEEEEEEECCS--CSEEEECCGGGCHHHHHHHHCSSCCEECCC--TTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS
T ss_pred EeeeeeEEcCC--CEEEEECCCCCcHHHHHHHHHcCCccccCc--ccceecceeeEEEecCcceEEEEeccccccchhhh
Confidence 34677888888 799999999999999999999886432222 12233333444555223789999999986431111
Q ss_pred HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCcc-ccCeEEEEEeCCCCCCC
Q 023214 87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKK-IFDYMIVVFTGGDELED 152 (285)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~-~~~~~iil~nk~D~~~~ 152 (285)
..+...+.+ ....++.+++|+|+. +-...+... ...+... ... ...|.++++||+|....
T Consensus 223 ~~L~~~fl~----~~era~~lL~vvDls-~~~~~~ls~g~~el~~l-a~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 223 KGLGLEFLR----HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAY-DPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp CCSCHHHHH----HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHH-CHHHHHSCEEEEEECCTTSCH
T ss_pred hhhhHHHHH----HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHH-hHHhhcCCEEEEEECCChhhH
Confidence 001111211 234678999999986 222222221 1222211 110 11388999999997754
No 185
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.30 E-value=1.5e-11 Score=105.58 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (285)
+|+++|.+|+||||+++.+.+...+ ......++|........ .....+.||||||...+..... ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~-~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l--------~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP-LDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSY--------DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS-GGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSH--------HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC-CccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhh--------hhhhh
Confidence 5899999999999999988866432 22222333443333332 2346799999999987642110 01234
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHH-HHHHH--hCccccCeEEEEEeCCCCCCC
Q 023214 101 KDGIHAVLVVFSVRSRFSQEEEAALH-SLQTL--FGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~-~~~~~--~~~~~~~~~iil~nk~D~~~~ 152 (285)
+++++++++|+|++++ ......++. ++... ..+. .|++++.||.|+...
T Consensus 70 yr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~--ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPS--INIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTT--CEEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCC--CcEEEEEECcccCch
Confidence 7889999999999766 333333332 22221 1233 399999999998764
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.29 E-value=2.8e-11 Score=103.69 Aligned_cols=127 Identities=20% Similarity=0.170 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC-cccccccCC----CCcceeEEEEEEEe---eCCceEEEEeCCCCCCCCCC---cHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR-RAFKSRASS----SGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAG---SEF 88 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~-~~~~~~~~~----~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~---~~~ 88 (285)
.+|+|+|+||+|||||+|+|+|. ..+..+... ...+.......... .....++++||||+.+.... ...
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~ 98 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 98 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH
Confidence 78899999999999999999997 433333100 01121111111111 11356899999999543110 011
Q ss_pred HHHHHH----HHHhhc---------cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 89 VGKEIV----KCIGMA---------KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 89 ~~~~~~----~~~~~~---------~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+...+. .++... ...+++++|++++. .+++..+. ..++.. .... ++++|+||.|....
T Consensus 99 l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l-~~~~--~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 99 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAI-HNKV--NIVPVIAKADTLTL 170 (301)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHH-TTTS--CEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHH-HhcC--CEEEEEEeCCCCCH
Confidence 121111 222111 12346688888764 35888775 334443 2223 89999999998764
No 187
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.28 E-value=1.7e-11 Score=106.12 Aligned_cols=115 Identities=20% Similarity=0.119 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCce--EEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV--VNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (285)
.+|+++|.+|+|||||++.+++.... .... +.+.......... .+.. +.++||||...+... .
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-----------~ 220 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYI--PTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRL-----------R 220 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-CSCC--CCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGTTT-----------G
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCC-cccC--CcccceeEEEEEE-CCEEEEEEEEeCCCchhhhHH-----------H
Confidence 79999999999999999999966532 2111 1121111222233 4444 559999998654321 2
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 98 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..++..+|++++|+|++++.+..+. .++..+....+ . .|+++|+||+|....
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD 274 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SCEEEEEECHHHHTC
T ss_pred HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-C--CcEEEEEEchhcccc
Confidence 2447789999999999755444443 34555555433 2 399999999997654
No 188
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.28 E-value=4.8e-13 Score=124.64 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=61.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccc--------------c---------------cCCCCcceeEEEEEEEeeCC
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMQRTVLKDG 68 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~ 68 (285)
...+|+++|+.++|||||+|.|++...... + ....++|+...+..+.+ .+
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~~ 254 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-DK 254 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-CC
Confidence 347899999999999999999974321100 0 01235677666666666 57
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhCccccCeEE
Q 023214 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-----F--SQEEEAALHSLQTLFGKKIFDYMI 141 (285)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~~~~i 141 (285)
..++||||||+.++.... ...+..+|++|+|+|+..+ + ....+..+..+... +.+ ++|
T Consensus 255 ~~i~iiDTPGh~~f~~~~-----------~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gip---~iI 319 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGM-----------IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GIS---EIV 319 (592)
T ss_dssp ----CCEEESSSEEEEEC-----------CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SCC---CEE
T ss_pred eEEEEEECCChHHHHHHH-----------HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CCC---eEE
Confidence 889999999988653211 1234568999999998643 3 55566666555543 432 589
Q ss_pred EEEeCCCCCC
Q 023214 142 VVFTGGDELE 151 (285)
Q Consensus 142 il~nk~D~~~ 151 (285)
+++||+|...
T Consensus 320 vviNKiDl~~ 329 (592)
T 3mca_A 320 VSVNKLDLMS 329 (592)
T ss_dssp EEEECGGGGT
T ss_pred EEEecccccc
Confidence 9999999875
No 189
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.27 E-value=9.3e-12 Score=113.01 Aligned_cols=117 Identities=19% Similarity=0.205 Sum_probs=67.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc-cc------------------------cc----cCCCCcceeEEEEEEEeeCCc
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRA-FK------------------------SR----ASSSGVTSTCEMQRTVLKDGQ 69 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~-~~------------------------~~----~~~~~~t~~~~~~~~~~~~~~ 69 (285)
..+|+++|+.++|||||++.|++... +. .. ....++|+...+..+.+ .+.
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~~ 121 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EHR 121 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SSE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CCe
Confidence 47999999999999999999974211 00 00 01235666666666666 678
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCccccCeEEE
Q 023214 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYMIV 142 (285)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~ii 142 (285)
.++||||||+.++.. .....+..+|++++|+|+.++. .+..+..+..+.. .+-+ ++++
T Consensus 122 ~~~iiDtPGh~~f~~-----------~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~vp---~iiv 186 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVT-----------NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGIN---HLVV 186 (467)
T ss_dssp EEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCS---SEEE
T ss_pred EEEEEECCCcHHHHH-----------HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCCC---EEEE
Confidence 899999999876421 1223457789999999997542 1234444444433 2321 4899
Q ss_pred EEeCCCCCC
Q 023214 143 VFTGGDELE 151 (285)
Q Consensus 143 l~nk~D~~~ 151 (285)
++||+|...
T Consensus 187 viNK~Dl~~ 195 (467)
T 1r5b_A 187 VINKMDEPS 195 (467)
T ss_dssp EEECTTSTT
T ss_pred EEECccCCC
Confidence 999999864
No 190
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.24 E-value=5.1e-11 Score=116.36 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=79.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc---------c---c--cccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRA---------F---K--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~---------~---~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (285)
+..+|+++|+.++|||||++.|++... + + ......|+|+......... .+..++|+||||+.+
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed-- 371 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD-- 371 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH--
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH--
Confidence 347999999999999999999986410 0 0 0001234555544444444 578899999999653
Q ss_pred CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+.......+..+|++++|+|+.++.....+..+..+... +-+ ++|+++||+|....
T Consensus 372 ---------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gIP---~IIVVINKiDLv~d 427 (1289)
T 3avx_A 372 ---------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GVP---YIIVFLNKCDMVDD 427 (1289)
T ss_dssp ---------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TCS---CEEEEEECCTTCCC
T ss_pred ---------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CCC---eEEEEEeecccccc
Confidence 222333457789999999999877777777777666553 431 37899999998753
No 191
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.24 E-value=9.9e-12 Score=120.20 Aligned_cols=116 Identities=25% Similarity=0.337 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCCcceeEEEEEEEee---------------CCc
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK---------------DGQ 69 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~~~ 69 (285)
..+|+|+|+.|+|||||++.|++........ ...++|+........+. .+.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 4799999999999999999998642111100 11234544444444442 156
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCC
Q 023214 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (285)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~ 149 (285)
.++||||||+.++.. +.. .++..+|++++|+|+.++.+..+...+..+... .. |+++++||+|.
T Consensus 99 ~i~liDTPG~~df~~-------~~~----~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~~--p~ilviNK~D~ 162 (842)
T 1n0u_A 99 LINLIDSPGHVDFSS-------EVT----AALRVTDGALVVVDTIEGVCVQTETVLRQALGE---RI--KPVVVINKVDR 162 (842)
T ss_dssp EEEEECCCCCCSSCH-------HHH----HHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---TC--EEEEEEECHHH
T ss_pred eEEEEECcCchhhHH-------HHH----HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---CC--CeEEEEECCCc
Confidence 799999999988642 122 234567999999999888888887766655432 22 89999999997
Q ss_pred C
Q 023214 150 L 150 (285)
Q Consensus 150 ~ 150 (285)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 6
No 192
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.24 E-value=2.4e-11 Score=112.25 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=71.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEE----EEEee---CCceEEEEeCCCCCCCCCCcHHHHH
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ----RTVLK---DGQVVNVIDTPGLFDFSAGSEFVGK 91 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~ 91 (285)
..+|+|+|.+|+|||||+|.+++...........+.+...... ..... .+..+.++||||...+......
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~--- 117 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF--- 117 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH---
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH---
Confidence 3899999999999999999999876421111111222111000 01111 2567999999997665433321
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.+..+|++++|+|+++. .....++..+..... . .|+++|.||+|....
T Consensus 118 --------~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 118 --------FMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPS 165 (535)
T ss_dssp --------HHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTT
T ss_pred --------HccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccc
Confidence 13457999999998632 334556666666533 2 399999999998754
No 193
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.15 E-value=4e-10 Score=105.42 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccc-ccccCCCCc-ce-------------eEEEE-----------------------
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGV-TS-------------TCEMQ----------------------- 61 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~-~~~~~~~~~-t~-------------~~~~~----------------------- 61 (285)
+.|+|+|+||||||||+++|+|...| .+|...... .. ...+.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 36999999999999999999998655 344322111 00 00000
Q ss_pred --------------EEEeeCCceEEEEeCCCCCCC--CCCcHHHHHHHHHHHhhccCCc-cEEEEEEeCCCCCCHHHHHH
Q 023214 62 --------------RTVLKDGQVVNVIDTPGLFDF--SAGSEFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEEEAA 124 (285)
Q Consensus 62 --------------~~~~~~~~~~~liDtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~ 124 (285)
.........++++|.||+... .+-+......+...+..+.... ..++.+++++..+. ....
T Consensus 126 ~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~ 203 (608)
T 3szr_A 126 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEA 203 (608)
T ss_dssp HCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHH
T ss_pred cCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHH
Confidence 011112356999999998752 2323344555666655544443 45555666532332 3334
Q ss_pred HHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 125 LHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 125 l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
+..+...-... .++|+|+||+|....
T Consensus 204 l~la~~v~~~g--~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 204 LSMAQEVDPEG--DRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred HHHHHHHhhcC--CceEEEecchhhcCc
Confidence 55555543222 389999999998855
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.15 E-value=4.7e-11 Score=104.12 Aligned_cols=90 Identities=16% Similarity=0.049 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC----------------CceEEEEeCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS 83 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~~~~ 83 (285)
.+|+|||.+|+|||||+|+|++....... ..++|..+....+.+.+ +..+.++||||+..+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~--~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN--YPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 68999999999999999999987632211 12233333333344411 2469999999997532
Q ss_pred CCcHHHHHHHHHHHhhccCCccEEEEEEeCCC
Q 023214 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS 115 (285)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~ 115 (285)
.. .+.+...+...++.+|++++|+|+.+
T Consensus 81 ~~----~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SK----GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HH----HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cc----cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 11 11121122233567899999999863
No 195
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.10 E-value=3.3e-12 Score=112.41 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccc-----cccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFK-----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (285)
.+|+++|.+|+|||||+|+|+|..... ......++|..... ... +..+.++||||+.++......+..+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL--DEESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES--SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe--cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 689999999999999999999864211 11122344444332 222 334899999999876533322222222
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+. ....++.++|+++++..+..+...++..+. +.. .|+++++||.|....
T Consensus 237 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 237 KLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred HHhc-cccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc
Confidence 2221 134578888999874221111222222221 222 289999999998865
No 196
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.09 E-value=1.6e-10 Score=102.65 Aligned_cols=131 Identities=20% Similarity=0.159 Sum_probs=77.2
Q ss_pred cccCccccCCCCC------------------ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcc-e-eEEEEEEEe
Q 023214 6 IDDDWELTSPSNG------------------ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVT-S-TCEMQRTVL 65 (285)
Q Consensus 6 ~~~~~~~~~~~~~------------------~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t-~-~~~~~~~~~ 65 (285)
+.+++++.+..|. ...++|+|+||+|||||+|+|+|...+..+....+.+ . ...+... .
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~ 116 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-H 116 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-C
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-c
Confidence 4566777777772 1299999999999999999999987766654432211 1 1112111 2
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe
Q 023214 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (285)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n 145 (285)
.....++++|+||+...... . .++...+. +...+.+++ ++.+ +...........+... +. |++++.|
T Consensus 117 ~~~~~ltv~D~~g~~~~~~~---~-~~~L~~~~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-~~----p~~lV~t 183 (413)
T 1tq4_A 117 PNIPNVVFWDLPGIGSTNFP---P-DTYLEKMK--FYEYDFFII-ISAT-RFKKNDIDIAKAISMM-KK----EFYFVRT 183 (413)
T ss_dssp SSCTTEEEEECCCGGGSSCC---H-HHHHHHTT--GGGCSEEEE-EESS-CCCHHHHHHHHHHHHT-TC----EEEEEEC
T ss_pred cccCCeeehHhhcccchHHH---H-HHHHHHcC--CCccCCeEE-eCCC-CccHHHHHHHHHHHhc-CC----CeEEEEe
Confidence 12346899999998643211 1 22222221 223345554 7776 3444444444444332 32 8999999
Q ss_pred CCCCC
Q 023214 146 GGDEL 150 (285)
Q Consensus 146 k~D~~ 150 (285)
+.|.+
T Consensus 184 kpdll 188 (413)
T 1tq4_A 184 KVDSD 188 (413)
T ss_dssp CHHHH
T ss_pred cCccc
Confidence 98865
No 197
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.07 E-value=1.2e-10 Score=101.42 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=27.4
Q ss_pred cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
.++++....+ ..|+++|++|+|||||+|.|++.
T Consensus 47 ~~l~~~~~~~--~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 47 DAIMPYCGNT--LRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHGGGCSCS--EEEEEEECTTSCHHHHHHHHHHH
T ss_pred HhCCcccCCC--EEEEEEcCCCCCHHHHHHHHHHH
Confidence 4456666666 89999999999999999999753
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.06 E-value=3.2e-10 Score=99.41 Aligned_cols=90 Identities=20% Similarity=0.163 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEee--------------------CCceEEEEeCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------------DGQVVNVIDTPGL 79 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~liDtpG~ 79 (285)
.+|+|+|.+|+|||||+|.|++....... ...+|.........++ .+..+.++||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~--~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN--YPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS--CCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC--CCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 57999999999999999999986421111 1122222222222221 2356999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC
Q 023214 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS 115 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~ 115 (285)
.........++..+... ++.+|++++|+|+.+
T Consensus 80 ~~~a~~~~~lg~~fl~~----ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAH----IREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHH----HHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHH----HHhCCEEEEEEECCC
Confidence 86533222233333332 456799999999863
No 199
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.03 E-value=2.6e-12 Score=113.17 Aligned_cols=122 Identities=21% Similarity=0.228 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc-----ccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR-----AFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (285)
.+|+++|.+|+|||||+|+|++.. ....+ ...++|.....+ .. +..+.++||||+.+.......+..+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~gtT~~~~~~--~~--~~~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMIEI--PL--ESGATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE-ECTTSSCEEEEE--EC--STTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeec-CCCCeEEeeEEE--Ee--CCCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 689999999999999999999872 22121 233455543332 22 345899999999876432222222222
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
..+. ....+|.++|+++++..+-.+...++..+. +.. .|+++++||.|....
T Consensus 238 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 238 KIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHR 289 (369)
T ss_dssp HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred HHHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCccccc
Confidence 2221 124679999999984221111222222222 222 289999999998744
No 200
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.03 E-value=3.8e-10 Score=99.37 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=50.5
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeC----------------CceEEEEeC
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDT 76 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDt 76 (285)
.+..+ .+|+|||.+|+|||||+|+|+|.....+ ...++|..+....+.+.+ +..+.++||
T Consensus 18 ~i~~~--~kvgIVG~pnvGKSTL~n~Ltg~~~~~~--~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt 93 (396)
T 2ohf_A 18 RFGTS--LKIGIVGLPNVGKSTFFNVLTNSQASAE--NFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI 93 (396)
T ss_dssp CSSSC--CCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred hccCC--CEEEEECCCCCCHHHHHHHHHCCCcccc--CCCccccCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence 34455 8999999999999999999999864211 122334444344444311 235899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 023214 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (285)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (285)
||+....... ..+...+...+..+|++++|+|+.
T Consensus 94 pGl~~~as~~----~glg~~~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 94 AGLVKGAHNG----QGLGNAFLSHISACDGIFHLTRAF 127 (396)
T ss_dssp CC---------------CCHHHHHHHTSSSEEEEEEC-
T ss_pred CCcccccchh----hHHHHHHHHHHHhcCeEEEEEecC
Confidence 9998643221 222222334456789999999985
No 201
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.01 E-value=2.4e-10 Score=99.41 Aligned_cols=35 Identities=23% Similarity=0.145 Sum_probs=31.1
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
+.+++++.+..| ..++|+|+||+|||||+|+|+|.
T Consensus 44 ~l~~i~~~~~~g--~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 44 LIDAVLPQTGRA--IRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHGGGCCCS--EEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhCCcccCCC--eEEEEECCCCCCHHHHHHHHHHh
Confidence 456788888888 89999999999999999999854
No 202
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.01 E-value=5.6e-10 Score=92.60 Aligned_cols=150 Identities=11% Similarity=0.043 Sum_probs=85.1
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccc----------eeEEEEEEEeeCCceE
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVT----------STCEMQRTVLKDGQVV 71 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t----------~~~~~~~~~~~~~~~~ 71 (285)
+.++++++|+.+++| ..++|+|+||+|||||+++|+|...+.+|.... +.. ....+..+.. .-...
T Consensus 14 ~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~-~l~~~ 90 (243)
T 1mv5_A 14 SEQILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDS-AIMAG 90 (243)
T ss_dssp SSCSEEEEEEEECTT--EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSS-CCCCE
T ss_pred CCceEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCC-ccccc
Confidence 456899999999999 899999999999999999999998766553211 000 0011111100 00011
Q ss_pred EEEeCCCCC-CCCCCcHHHHHHHHHHHhh--ccC----CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE-
Q 023214 72 NVIDTPGLF-DFSAGSEFVGKEIVKCIGM--AKD----GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV- 143 (285)
Q Consensus 72 ~liDtpG~~-~~~~~~~~~~~~~~~~~~~--~~~----~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil- 143 (285)
++.|...+. ........+ ......+.. ... +.+. .+-.....+|+++++++..++.+...+ +++++
T Consensus 91 tv~enl~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~gl~~--~~~~~~~~LSgGq~qrv~lAral~~~p---~lllLD 164 (243)
T 1mv5_A 91 TIRENLTYGLEGDYTDEDL-WQVLDLAFARSFVENMPDQLNT--EVGERGVKISGGQRQRLAIARAFLRNP---KILMLD 164 (243)
T ss_dssp EHHHHTTSCTTSCSCHHHH-HHHHHHHTCTTTTTSSTTGGGC--EESTTSBCCCHHHHHHHHHHHHHHHCC---SEEEEE
T ss_pred cHHHHHhhhccCCCCHHHH-HHHHHHhChHHHHHhCccchhc--hhccCcCcCCHHHHHHHHHHHHHhcCC---CEEEEE
Confidence 333322221 111111111 111111111 000 1111 111123479999999999999887765 67777
Q ss_pred --EeCCCCCCCChhcHHHHhhh
Q 023214 144 --FTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 144 --~nk~D~~~~~~~~l~~~l~~ 163 (285)
++.+|.... ..+.+.+..
T Consensus 165 EPts~LD~~~~--~~i~~~l~~ 184 (243)
T 1mv5_A 165 EATASLDSESE--SMVQKALDS 184 (243)
T ss_dssp CCSCSSCSSSC--CHHHHHHHH
T ss_pred CCcccCCHHHH--HHHHHHHHH
Confidence 899998776 666666653
No 203
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.01 E-value=2.6e-10 Score=92.62 Aligned_cols=138 Identities=15% Similarity=0.063 Sum_probs=80.8
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (285)
++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|.... +.... .. ...-.++.+.|.+...
T Consensus 23 ~il~~vsl~i~~G--e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~------~~-~~~i~~v~q~~~~~~~- 92 (214)
T 1sgw_A 23 PVLERITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------KV-KGKIFFLPEEIIVPRK- 92 (214)
T ss_dssp EEEEEEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG------GG-GGGEEEECSSCCCCTT-
T ss_pred eEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh------hh-cCcEEEEeCCCcCCCC-
Confidence 6788999999999 899999999999999999999988765543211 10000 00 1112234445554321
Q ss_pred CCcHHHH-------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCC
Q 023214 84 AGSEFVG-------------KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGG 147 (285)
Q Consensus 84 ~~~~~~~-------------~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~ 147 (285)
.+..+.. ..+...+... +.+.. -.....+|+++++++..++.+...+ +++++ ++.+
T Consensus 93 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~--gl~~~---~~~~~~LSgGqkqrv~laraL~~~p---~lllLDEPts~L 164 (214)
T 1sgw_A 93 ISVEDYLKAVASLYGVKVNKNEIMDALESV--EVLDL---KKKLGELSQGTIRRVQLASTLLVNA---EIYVLDDPVVAI 164 (214)
T ss_dssp SBHHHHHHHHHHHTTCCCCHHHHHHHHHHT--TCCCT---TSBGGGSCHHHHHHHHHHHHTTSCC---SEEEEESTTTTS
T ss_pred CCHHHHHHHHHHhcCCchHHHHHHHHHHHc--CCCcC---CCChhhCCHHHHHHHHHHHHHHhCC---CEEEEECCCcCC
Confidence 1111110 0111111111 11110 0112369999999999999887765 67777 7888
Q ss_pred CCCCCChhcHHHHhh
Q 023214 148 DELEDNDETLEDYLG 162 (285)
Q Consensus 148 D~~~~~~~~l~~~l~ 162 (285)
|.... ..+.+.+.
T Consensus 165 D~~~~--~~l~~~l~ 177 (214)
T 1sgw_A 165 DEDSK--HKVLKSIL 177 (214)
T ss_dssp CTTTH--HHHHHHHH
T ss_pred CHHHH--HHHHHHHH
Confidence 86655 55555554
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.00 E-value=4.2e-09 Score=95.82 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=71.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh------CCcccccccCCCCcce-----------eEEEEEE-----------------
Q 023214 18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSSGVTS-----------TCEMQRT----------------- 63 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~------g~~~~~~~~~~~~~t~-----------~~~~~~~----------------- 63 (285)
...+|+++|++|+||||+++.|+ |..+......+..... ...++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999999 6654222111100000 0001110
Q ss_pred EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCe-EEE
Q 023214 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIV 142 (285)
Q Consensus 64 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ii 142 (285)
.+ .+..++||||||.... ......++...... ..+|.+++|+|+....+ ....+..+... . | .++
T Consensus 180 ~~-~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~----~--~i~gv 245 (504)
T 2j37_W 180 KN-ENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK----V--DVASV 245 (504)
T ss_dssp HH-TTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH----H--CCCCE
T ss_pred HH-CCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh----c--CceEE
Confidence 01 4567999999998752 33344555444332 26789999999965543 22223333321 1 5 489
Q ss_pred EEeCCCCCCCC
Q 023214 143 VFTGGDELEDN 153 (285)
Q Consensus 143 l~nk~D~~~~~ 153 (285)
|+||+|.....
T Consensus 246 VlNK~D~~~~~ 256 (504)
T 2j37_W 246 IVTKLDGHAKG 256 (504)
T ss_dssp EEECTTSCCCC
T ss_pred EEeCCccccch
Confidence 99999987553
No 205
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.99 E-value=5.5e-10 Score=91.50 Aligned_cols=44 Identities=23% Similarity=0.174 Sum_probs=39.1
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|++++.| ..++|+|+||||||||+++|+|...+.+|
T Consensus 16 ~~~~l~~vsl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 59 (224)
T 2pcj_A 16 GYEILKGISLSVKKG--EFVSIIGASGSGKSTLLYILGLLDAPTEG 59 (224)
T ss_dssp TEEEEEEEEEEEETT--CEEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred CEeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 346789999999999 89999999999999999999998876554
No 206
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.99 E-value=8.9e-10 Score=96.55 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 023214 18 GERTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g 41 (285)
...+|+|+|++|+|||||++.|++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 348999999999999999999874
No 207
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.98 E-value=6e-10 Score=93.01 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=39.1
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+..+++++|+.+.+| ..++|+|+||||||||+++|+|...+.+|
T Consensus 27 ~~~vl~~vsl~i~~G--ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G 70 (256)
T 1vpl_A 27 KKEILKGISFEIEEG--EIFGLIGPNGAGKTTTLRIISTLIKPSSG 70 (256)
T ss_dssp TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CEEEEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 346788999999999 89999999999999999999998876554
No 208
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.98 E-value=1.1e-09 Score=90.41 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=38.7
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
++++++|+.+..| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 19 ~~L~~isl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~ 61 (235)
T 3tif_A 19 YALKNVNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61 (235)
T ss_dssp EEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred eeEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCceE
Confidence 4789999999999 899999999999999999999988766543
No 209
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.98 E-value=1.9e-09 Score=99.60 Aligned_cols=107 Identities=20% Similarity=0.194 Sum_probs=63.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeEEEEEEEe--eCCceEEEEeCCCCCCCCC-CcHHHHHHH
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSA-GSEFVGKEI 93 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~-~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtpG~~~~~~-~~~~~~~~~ 93 (285)
+..+|+|+|++|+|||||+|.|+|... ++.+....++|.....+...+ ..+..+.|+||||+.+... +.......+
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~f 116 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIF 116 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHH
Confidence 347899999999999999999999874 222222223343332222222 1467899999999987543 222211211
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 023214 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130 (285)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (285)
.-....+ + ++|+++...++..+...+..+..
T Consensus 117 ala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 117 ALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence 1111111 2 45566545788888776666544
No 210
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.97 E-value=8.2e-10 Score=96.48 Aligned_cols=23 Identities=30% Similarity=0.154 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|+|++|||||||+|.|+|.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 89999999999999999999974
No 211
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.97 E-value=7.3e-10 Score=92.83 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=39.2
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+..| ..++|+|+||+|||||+++|+|...+..|
T Consensus 36 ~~~vL~~vsl~i~~G--ei~~liG~NGsGKSTLlk~l~Gl~~p~~G 79 (263)
T 2olj_A 36 SLEVLKGINVHIREG--EVVVVIGPSGSGKSTFLRCLNLLEDFDEG 79 (263)
T ss_dssp TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CEEEEEeeEEEEcCC--CEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence 346789999999999 89999999999999999999998876554
No 212
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.96 E-value=1.2e-09 Score=89.73 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=78.7
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (285)
+.++++++|+.+++| ..++|+|+||+|||||+++|+|...+.+|.. .+ .+.-.++.+.|.+...
T Consensus 20 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-------------~~-~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 20 GTPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KH-SGRISFCSQFSWIMPG 83 (229)
T ss_dssp SCCSEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-------------EE-CSCEEEECSSCCCCSB
T ss_pred CceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCcCCccEE-------------EE-CCEEEEEecCCcccCC
Confidence 357899999999999 8999999999999999999999887654321 12 2222334444444321
Q ss_pred CCCcHHHH--------HHHHHHHhhc-----cCC-ccEEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214 83 SAGSEFVG--------KEIVKCIGMA-----KDG-IHAVL-VVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F 144 (285)
Q Consensus 83 ~~~~~~~~--------~~~~~~~~~~-----~~~-~~~~l-~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~ 144 (285)
+..+.. ......+... ... ++..- .+-.....+|+++++++..++.+...+ +++++ +
T Consensus 84 --tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lllLDEPt 158 (229)
T 2pze_A 84 --TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA---DLYLLDSPF 158 (229)
T ss_dssp --CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC---SEEEEESTT
T ss_pred --CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC---CEEEEECcc
Confidence 111100 0011111000 000 00000 011112479999999999999988765 67777 7
Q ss_pred eCCCCCCCChhcHHHH
Q 023214 145 TGGDELEDNDETLEDY 160 (285)
Q Consensus 145 nk~D~~~~~~~~l~~~ 160 (285)
+.+|.... ..+.+.
T Consensus 159 s~LD~~~~--~~i~~~ 172 (229)
T 2pze_A 159 GYLDVLTE--KEIFES 172 (229)
T ss_dssp TTSCHHHH--HHHHHH
T ss_pred cCCCHHHH--HHHHHH
Confidence 77775444 444443
No 213
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.96 E-value=1.2e-09 Score=96.48 Aligned_cols=94 Identities=17% Similarity=0.112 Sum_probs=60.7
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCC-----------------ceEEEEe
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-----------------QVVNVID 75 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liD 75 (285)
.+..+ .+|+|+|+||+|||||+|+|+|....... ...++|..+....+.+ .+ ..+.++|
T Consensus 16 ~v~~g--~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD 91 (392)
T 1ni3_A 16 RPGNN--LKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFD 91 (392)
T ss_dssp SSSSC--CEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred cccCC--CEEEEECCCCCCHHHHHHHHHCCCccccc-CCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEe
Confidence 44556 89999999999999999999996541121 1223344444444444 32 3589999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 023214 76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (285)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (285)
+||+.......+.+...+. ..+..+|++++|+++.
T Consensus 92 ~pGl~~~~s~~e~L~~~fl----~~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 92 IAGLTKGASTGVGLGNAFL----SHVRAVDAIYQVVRAF 126 (392)
T ss_dssp TGGGCCCCCSSSSSCHHHH----HHHTTCSEEEEEEECC
T ss_pred ccccccCCcHHHHHHHHHH----HHHHHHHHHHHHHhcc
Confidence 9999764333222222332 3345789999999985
No 214
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.94 E-value=1.8e-10 Score=96.25 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=30.6
Q ss_pred CccEEEEEEeCCCC--CCHHH-HHHHHHHHHHh-CccccCeEEEEEeCCCCCC
Q 023214 103 GIHAVLVVFSVRSR--FSQEE-EAALHSLQTLF-GKKIFDYMIVVFTGGDELE 151 (285)
Q Consensus 103 ~~~~~l~v~~~~~~--~~~~~-~~~l~~~~~~~-~~~~~~~~iil~nk~D~~~ 151 (285)
++|++++|+|++++ .+... ..++..+.... ... .|+++|.||+|+..
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEGV 212 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGBC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEcccccc
Confidence 58999999999755 55544 24444444431 122 38999999999754
No 215
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.93 E-value=5.8e-11 Score=99.09 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=39.8
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+.++++++|+.+++| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 17 ~~~vl~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 61 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKG--DILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61 (253)
T ss_dssp TTEEEEEEEEEEETT--CEEEEECCSSSSHHHHHHHHTTSSCCSEEE
T ss_pred CCeEEEEEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 456889999999999 899999999999999999999988765543
No 216
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.92 E-value=1.5e-09 Score=97.84 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=81.5
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC--Ccc---------------eeEEEEEEEe----
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS--GVT---------------STCEMQRTVL---- 65 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~--~~t---------------~~~~~~~~~~---- 65 (285)
..++++.+..| ..|+|+|+||+|||||++.|+|...+..+.... +.+ ..+.+..+..
T Consensus 283 ~~~Isl~i~~G--eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAP--FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTT--EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCC--eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 45788888888 899999999999999999999765433322100 000 0011111110
Q ss_pred ------------eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH---hhc-cCCccEEEEEEeCCCCCCHHHHHHHHHHH
Q 023214 66 ------------KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI---GMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQ 129 (285)
Q Consensus 66 ------------~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~l~v~~~~~~~~~~~~~~l~~~~ 129 (285)
..+..+.|+||+|.... ......++.... ... ...++-+++|+|+..+ ......+..+.
T Consensus 361 ~~tV~e~l~~a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~ 435 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFH 435 (503)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHH
Confidence 12346889999998642 233334443332 222 1236788889997523 22223333444
Q ss_pred HHhCccccCeEEEEEeCCCCCCCChhcHHHHhh
Q 023214 130 TLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 130 ~~~~~~~~~~~iil~nk~D~~~~~~~~l~~~l~ 162 (285)
..++ ...+++||+|..... ..+-.++.
T Consensus 436 ~~~~-----itgvIlTKLD~takg-G~~lsi~~ 462 (503)
T 2yhs_A 436 EAVG-----LTGITLTKLDGTAKG-GVIFSVAD 462 (503)
T ss_dssp HHTC-----CSEEEEECGGGCSCC-THHHHHHH
T ss_pred hhcC-----CCEEEEEcCCCcccc-cHHHHHHH
Confidence 3333 567899999975443 33444443
No 217
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.91 E-value=3.2e-09 Score=87.63 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=39.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++|+.+++| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 17 ~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (237)
T 2cbz_A 17 DPPTLNGITFSIPEG--ALVAVVGQVGCGKSSLLSALLAEMDKVEG 60 (237)
T ss_dssp SCCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred CCceeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 357899999999999 89999999999999999999998876554
No 218
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.91 E-value=3.1e-10 Score=96.98 Aligned_cols=44 Identities=27% Similarity=0.307 Sum_probs=39.3
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+.++++++||.+++| ..++|+|+||+|||||+++|+|...+..|
T Consensus 66 ~~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~G 109 (306)
T 3nh6_A 66 GRETLQDVSFTVMPG--QTLALVGPSGAGKSTILRLLFRFYDISSG 109 (306)
T ss_dssp TCEEEEEEEEEECTT--CEEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred CCceeeeeeEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence 356789999999999 89999999999999999999998876554
No 219
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.89 E-value=1.4e-09 Score=91.72 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=38.6
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
..+.+++|++++.| ..++|+|+||||||||+++|+|...+.+|
T Consensus 21 ~~~L~~isl~i~~G--e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G 63 (275)
T 3gfo_A 21 THALKGINMNIKRG--EVTAILGGNGVGKSTLFQNFNGILKPSSG 63 (275)
T ss_dssp CEEEEEEEEEEETT--SEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CeEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 34889999999999 89999999999999999999998876554
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.86 E-value=6.4e-09 Score=88.07 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=41.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 88 (285)
.+|+++|.+|+|||||+|+|+|......+.. .++|...... . .+..+.++||||+..+......
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~~--~--~~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWV--K--VGKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE--E--ETTTEEEEECCCCCCSCCCCHH
T ss_pred ceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEEE--E--eCCCEEEEECcCcCCCCCCCHH
Confidence 7999999999999999999999875444332 3455544322 2 2557999999999987655443
No 221
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.86 E-value=4.4e-09 Score=91.85 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=40.0
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
|+..+.+++|+++..| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 14 ~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 59 (362)
T 2it1_A 14 GNFTALNNINLKIKDG--EFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59 (362)
T ss_dssp SSSEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CCEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCceE
Confidence 3456788999999999 899999999999999999999998766543
No 222
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.86 E-value=3.2e-09 Score=92.40 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=40.2
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
|+..+++++|+++..| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 26 g~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 71 (355)
T 1z47_A 26 GGARSVRGVSFQIREG--EMVGLLGPSGSGKTTILRLIAGLERPTKGD 71 (355)
T ss_dssp TSTTCEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CCCEEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence 3456889999999999 899999999999999999999998766543
No 223
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.84 E-value=8.1e-09 Score=89.91 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=40.5
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
|+..+.+++|+.+..| ..++|+||||||||||+++|+|...+.+|.
T Consensus 15 ~~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~ 60 (359)
T 3fvq_A 15 QNTPVLNDISLSLDPG--EILFIIGASGCGKTTLLRCLAGFEQPDSGE 60 (359)
T ss_dssp TTEEEEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CCEEEEEeeEEEEcCC--CEEEEECCCCchHHHHHHHHhcCCCCCCcE
Confidence 3456788999999999 899999999999999999999998776653
No 224
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.82 E-value=4.4e-09 Score=92.20 Aligned_cols=46 Identities=30% Similarity=0.385 Sum_probs=40.3
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
|+..+.+++|+.+..| ..++|+|+||||||||+++|+|-..+.+|.
T Consensus 14 g~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~ 59 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLETITSGD 59 (381)
T ss_dssp TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CCEEEEeeeEEEECCC--CEEEEEcCCCchHHHHHHHHHcCCCCCCeE
Confidence 3456788999999999 899999999999999999999998766543
No 225
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.82 E-value=5.4e-09 Score=91.10 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=38.2
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.+.+++||.++.| ..++|+|+||||||||+++|+|...+.+|
T Consensus 42 ~aL~~vsl~i~~G--ei~~IiGpnGaGKSTLlr~i~GL~~p~~G 83 (366)
T 3tui_C 42 QALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTEG 83 (366)
T ss_dssp EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEEEeeEEEEcCC--CEEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence 4788999999999 89999999999999999999998876654
No 226
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.81 E-value=5.8e-09 Score=90.94 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=80.6
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEee--CCceEEEEeCCCCCCC
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLK--DGQVVNVIDTPGLFDF 82 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~ 82 (285)
+++++|+++..| ..++|+|+||||||||+++|+|...+.+|.... +..... ....... ...--++...+.++..
T Consensus 20 vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~-~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENG--ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS-NGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTT--CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEE-TTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcc-cccccCChhhCCEEEEeCCCccCCC
Confidence 788999999999 899999999999999999999998766554211 111100 0000000 0111234444443321
Q ss_pred C-------------C-CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---Ee
Q 023214 83 S-------------A-GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FT 145 (285)
Q Consensus 83 ~-------------~-~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~n 145 (285)
. . ........+...+... +.+.+ .-..-..+|+++++++.+.+.+...+ +++++ ++
T Consensus 97 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~--~~~~~~~LSGGq~QRvalAraL~~~P---~lLLLDEP~s 169 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL--DIHHV--LNHFPRELSGAQQQRVALARALVKDP---SLLLLDEPFS 169 (353)
T ss_dssp SCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT--TCGGG--TTSCGGGSCHHHHHHHHHHHHHTTCC---SEEEEESTTT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchH--hcCChhhCCHHHHHHHHHHHHHHhCC---CEEEEECCcc
Confidence 0 0 0111112222222211 11110 00011369999999999999887765 67777 78
Q ss_pred CCCCCCCChhcHHHHhh
Q 023214 146 GGDELEDNDETLEDYLG 162 (285)
Q Consensus 146 k~D~~~~~~~~l~~~l~ 162 (285)
.+|.... ..+.+.+.
T Consensus 170 ~LD~~~r--~~l~~~l~ 184 (353)
T 1oxx_K 170 NLDARMR--DSARALVK 184 (353)
T ss_dssp TSCGGGH--HHHHHHHH
T ss_pred cCCHHHH--HHHHHHHH
Confidence 8886554 55555544
No 227
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.80 E-value=1.4e-08 Score=86.74 Aligned_cols=134 Identities=16% Similarity=0.233 Sum_probs=75.8
Q ss_pred cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCc-------c----eeEEEEEEEee----
Q 023214 8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGV-------T----STCEMQRTVLK---- 66 (285)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~------~~~~-------t----~~~~~~~~~~~---- 66 (285)
..+++.+..| ..++++|+||+|||||++.|+|...+..+.. .... . ..+.+..+...
T Consensus 91 ~~l~~~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 91 TELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CSCCCCSSSC--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccCCC--cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 3567777778 8999999999999999999998765433321 0000 0 01112111110
Q ss_pred -------------CCceEEEEeCCCCCCCCCCcHHHHHHH---HHHHhh-ccCCccEEEEEEeCCCCCCHHHHHHHHHHH
Q 023214 67 -------------DGQVVNVIDTPGLFDFSAGSEFVGKEI---VKCIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSLQ 129 (285)
Q Consensus 67 -------------~~~~~~liDtpG~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~ 129 (285)
.+....++||+|.... ......++ +..+.. ....|+-+++|+|+...++.... +..+.
T Consensus 169 ~~~v~e~l~~~~~~~~d~~lldt~gl~~~---~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~ 243 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYDVVLCDTSGRLHT---NYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFN 243 (302)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSSC---CHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHH
T ss_pred HHHHHHHHHHHHHcCCcchHHhcCCCCcc---hhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHH
Confidence 1234678999998743 22222222 222222 23457777788887545554432 23333
Q ss_pred HHhCccccCeEEEEEeCCCCCCCC
Q 023214 130 TLFGKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 130 ~~~~~~~~~~~iil~nk~D~~~~~ 153 (285)
...+ ..++++||.|....-
T Consensus 244 ~~~g-----~t~iiiThlD~~~~~ 262 (302)
T 3b9q_A 244 EVVG-----ITGLILTKLDGSARG 262 (302)
T ss_dssp HHTC-----CCEEEEECCSSCSCT
T ss_pred HhcC-----CCEEEEeCCCCCCcc
Confidence 3222 577889999976543
No 228
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.79 E-value=1.6e-08 Score=85.81 Aligned_cols=132 Identities=12% Similarity=0.082 Sum_probs=76.5
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (285)
..+++++|+.+++| ..++|+|+||+|||||+++|+|...+.+|.. .+ .+.-.++.+.|.++..
T Consensus 51 ~~vl~~isl~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I-------------~~-~g~i~~v~Q~~~l~~~- 113 (290)
T 2bbs_A 51 TPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KH-SGRISFCSQNSWIMPG- 113 (290)
T ss_dssp CCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHTTSSCEEEEEE-------------EC-CSCEEEECSSCCCCSS-
T ss_pred ceEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-------------EE-CCEEEEEeCCCccCcc-
Confidence 46788999999999 8999999999999999999999887655432 11 1222233334443321
Q ss_pred CCcHH-HH------HHHHHHHhh--------ccCC-ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214 84 AGSEF-VG------KEIVKCIGM--------AKDG-IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F 144 (285)
Q Consensus 84 ~~~~~-~~------~~~~~~~~~--------~~~~-~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~ 144 (285)
+..+ +. ..+...+.. .++. .+. .+-.....+|+++++++..++.+...+ +++++ +
T Consensus 114 -tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~LSgGq~QRv~lAraL~~~p---~lllLDEPt 187 (290)
T 2bbs_A 114 -TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNI--VLGEGGITLSGGQRARISLARAVYKDA---DLYLLDSPF 187 (290)
T ss_dssp -BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGC--BC----CCCCHHHHHHHHHHHHHHSCC---SEEEEESTT
T ss_pred -cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccc--hhcCccCcCCHHHHHHHHHHHHHHCCC---CEEEEECCc
Confidence 1111 00 000001100 0110 000 001112479999999999999888765 67777 7
Q ss_pred eCCCCCCCChhcHHHH
Q 023214 145 TGGDELEDNDETLEDY 160 (285)
Q Consensus 145 nk~D~~~~~~~~l~~~ 160 (285)
+.+|.... ..+.+.
T Consensus 188 s~LD~~~~--~~i~~~ 201 (290)
T 2bbs_A 188 GYLDVLTE--KEIFES 201 (290)
T ss_dssp TTCCHHHH--HHHHHH
T ss_pred ccCCHHHH--HHHHHH
Confidence 77775444 444443
No 229
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.79 E-value=4.3e-09 Score=91.81 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=39.5
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+..+++++|+++..| ..++|+|+||||||||+++|+|-..+.+|.
T Consensus 15 ~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 59 (359)
T 2yyz_A 15 KVKAVDGVSFEVKDG--EFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59 (359)
T ss_dssp TEEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CEEEEeeeEEEEcCC--CEEEEEcCCCchHHHHHHHHHCCCCCCccE
Confidence 345788999999999 899999999999999999999998766543
No 230
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.78 E-value=7.2e-10 Score=97.19 Aligned_cols=45 Identities=24% Similarity=0.261 Sum_probs=39.6
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+..+++++|+.+..| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 23 ~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 67 (372)
T 1v43_A 23 NFTAVNKLNLTIKDG--EFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67 (372)
T ss_dssp TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CEEEEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCceE
Confidence 345788999999999 899999999999999999999998766553
No 231
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.77 E-value=1e-08 Score=89.97 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=39.6
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+..+++++|+.+..| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 15 ~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 59 (372)
T 1g29_1 15 EVTAVREMSLEVKDG--EFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59 (372)
T ss_dssp TEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CEEEEeeeEEEEcCC--CEEEEECCCCcHHHHHHHHHHcCCCCCccE
Confidence 345788999999999 899999999999999999999998766553
No 232
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.77 E-value=9.9e-09 Score=95.68 Aligned_cols=147 Identities=15% Similarity=0.142 Sum_probs=81.5
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccce----------eEEEEEEEeeCCceEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTS----------TCEMQRTVLKDGQVVN 72 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~----------~~~~~~~~~~~~~~~~ 72 (285)
.++++++|+++++| ..++|+|+||+|||||++.|+|...|..|.... +... ...+..+.. .-...+
T Consensus 356 ~~~l~~i~l~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~-~l~~~t 432 (582)
T 3b5x_A 356 KPALSHVSFSIPQG--KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV-HLFNDT 432 (582)
T ss_pred ccccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCC-cccccc
Confidence 56899999999999 899999999999999999999988766553211 1000 011111100 000001
Q ss_pred EEeCCCCCC-CCCCcHHHHHHHHHHHhhc------cCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccCeEEEE-
Q 023214 73 VIDTPGLFD-FSAGSEFVGKEIVKCIGMA------KDGIHAVLVVF-SVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV- 143 (285)
Q Consensus 73 liDtpG~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil- 143 (285)
+-|...+.. ...+.+ ++...+... ..-++++--.+ +.+..+|+++++++...+..+.++ +++++
T Consensus 433 v~eni~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p---~illlD 505 (582)
T 3b5x_A 433 IANNIAYAAEGEYTRE----QIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA---PVLILD 505 (582)
T ss_pred HHHHHhccCCCCCCHH----HHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC---CEEEEE
Confidence 111111111 111111 122221111 00111211112 224579999999999999988765 77777
Q ss_pred --EeCCCCCCCChhcHHHHhh
Q 023214 144 --FTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 144 --~nk~D~~~~~~~~l~~~l~ 162 (285)
++..|.... ..+.+.+.
T Consensus 506 Epts~LD~~~~--~~i~~~l~ 524 (582)
T 3b5x_A 506 EATSALDTESE--RAIQAALD 524 (582)
T ss_pred CccccCCHHHH--HHHHHHHH
Confidence 788886554 45555554
No 233
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.77 E-value=6.1e-10 Score=93.31 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=37.5
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
.++++++|+.++ | ..++|+|+||+|||||+++|+|.. |.+|.
T Consensus 18 ~~il~~vsl~i~-G--e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~ 59 (263)
T 2pjz_A 18 RFSLENINLEVN-G--EKVIILGPNGSGKTTLLRAISGLL-PYSGN 59 (263)
T ss_dssp EEEEEEEEEEEC-S--SEEEEECCTTSSHHHHHHHHTTSS-CCEEE
T ss_pred ceeEEeeeEEEC-C--EEEEEECCCCCCHHHHHHHHhCCC-CCCcE
Confidence 457899999999 9 899999999999999999999988 76543
No 234
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.76 E-value=6.1e-09 Score=90.52 Aligned_cols=41 Identities=29% Similarity=0.278 Sum_probs=37.7
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
+++++|+.+..| ..++|+|+||+|||||+++|+|-..+.+|
T Consensus 15 ~l~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G 55 (348)
T 3d31_A 15 SLDNLSLKVESG--EYFVILGPTGAGKTLFLELIAGFHVPDSG 55 (348)
T ss_dssp EEEEEEEEECTT--CEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred EEeeeEEEEcCC--CEEEEECCCCccHHHHHHHHHcCCCCCCc
Confidence 788999999999 89999999999999999999999876654
No 235
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.75 E-value=2.2e-08 Score=87.39 Aligned_cols=137 Identities=16% Similarity=0.244 Sum_probs=77.2
Q ss_pred CccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC---CCcc--------------eeEEEEEEEee-----
Q 023214 9 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---SGVT--------------STCEMQRTVLK----- 66 (285)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~---~~~t--------------~~~~~~~~~~~----- 66 (285)
.+++.+..| ..|+|+|+||+|||||++.|+|...+..+... ..+. ..+.+..+...
T Consensus 149 ~l~l~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 149 ELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp SCCCCSSSS--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CcceecCCC--eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 467777777 89999999999999999999987654332210 0000 01112211110
Q ss_pred ------------CCceEEEEeCCCCCCCCCCcHHHHHHHH---HHHh-hccCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 023214 67 ------------DGQVVNVIDTPGLFDFSAGSEFVGKEIV---KCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130 (285)
Q Consensus 67 ------------~~~~~~liDtpG~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (285)
.+....++||.|.... ......++. ..+. .....|+-+++|+|+...++.... +..+..
T Consensus 227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~---~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~ 301 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYDVVLCDTSGRLHT---NYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNE 301 (359)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHhcCCChh---hhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHH
Confidence 1234679999998753 222222222 2222 223457777888887545544332 233333
Q ss_pred HhCccccCeEEEEEeCCCCCCCChhcH
Q 023214 131 LFGKKIFDYMIVVFTGGDELEDNDETL 157 (285)
Q Consensus 131 ~~~~~~~~~~iil~nk~D~~~~~~~~l 157 (285)
..+ ..+|++||.|....-+..+
T Consensus 302 ~~g-----~t~iiiThlD~~~~gG~~l 323 (359)
T 2og2_A 302 VVG-----ITGLILTKLDGSARGGCVV 323 (359)
T ss_dssp HTC-----CCEEEEESCTTCSCTHHHH
T ss_pred hcC-----CeEEEEecCcccccccHHH
Confidence 222 5788899999765543333
No 236
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.71 E-value=4.7e-09 Score=87.96 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=39.7
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+.++++++|+.+..| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 18 ~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~ 62 (262)
T 1b0u_A 18 GHEVLKGVSLQARAG--DVISIIGSSGSGKSTFLRCINFLEKPSEGA 62 (262)
T ss_dssp TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CEEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 456789999999999 899999999999999999999988766543
No 237
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.71 E-value=4.7e-09 Score=88.12 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=39.9
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++.++.+++|+.+..| ..++|+|+||||||||+++|+|...+.+|
T Consensus 22 ~~~~vL~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 66 (266)
T 4g1u_C 22 QQQALINDVSLHIASG--EMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66 (266)
T ss_dssp TTEEEEEEEEEEEETT--CEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred CCeeEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 3456789999999999 89999999999999999999998876654
No 238
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.70 E-value=4.4e-09 Score=87.88 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=39.8
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+.++++++|+++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 19 ~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~ 63 (257)
T 1g6h_A 19 EFKALDGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKADEGR 63 (257)
T ss_dssp TEEEEEEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CEeeEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 446789999999999 899999999999999999999998766553
No 239
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.69 E-value=1.4e-07 Score=78.70 Aligned_cols=76 Identities=13% Similarity=-0.046 Sum_probs=41.4
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHH-HHHH-HHHhCccccCeEEEEEeC
Q 023214 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSL-QTLFGKKIFDYMIVVFTG 146 (285)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~-~~~~~~~~~~~~iil~nk 146 (285)
..+.|+||||..++. ....+...+...+.. +++++++|+....+..+... +... ....... .|+++|+||
T Consensus 109 ~d~iiiDtpG~~~~~-----~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~iv~NK 180 (262)
T 1yrb_A 109 NDYVLIDTPGQMETF-----LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLG--ATTIPALNK 180 (262)
T ss_dssp CSEEEEECCSSHHHH-----HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHT--SCEEEEECC
T ss_pred CCEEEEeCCCccchh-----hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccC--CCeEEEEec
Confidence 369999999975321 111111112223345 88899998854555544321 1111 1111112 289999999
Q ss_pred CCCCCC
Q 023214 147 GDELED 152 (285)
Q Consensus 147 ~D~~~~ 152 (285)
+|....
T Consensus 181 ~D~~~~ 186 (262)
T 1yrb_A 181 VDLLSE 186 (262)
T ss_dssp GGGCCH
T ss_pred cccccc
Confidence 997654
No 240
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.68 E-value=5.6e-09 Score=86.37 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=39.5
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+.++++++|+.+++| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 18 ~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 62 (240)
T 1ji0_A 18 AIHAIKGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62 (240)
T ss_dssp TEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CeeEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 345788999999999 899999999999999999999988766543
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.68 E-value=5.8e-08 Score=82.97 Aligned_cols=123 Identities=16% Similarity=0.141 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCc-----------ceeEEEEEEEe----------------e
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGV-----------TSTCEMQRTVL----------------K 66 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~------~~~~-----------t~~~~~~~~~~----------------~ 66 (285)
..|+|+|+||||||||++.|+|...+..+.. .... ...+.+..+.. .
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~ 182 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA 182 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 7999999999999999999997654433211 0000 00111111110 0
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHH---HHHHHhh-ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEE
Q 023214 67 DGQVVNVIDTPGLFDFSAGSEFVGKE---IVKCIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142 (285)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ii 142 (285)
.+..+.++||+|.... ......+ ....+.. ....|+.+++++|+..+. .....+..+....+ ..++
T Consensus 183 ~~~d~~llDt~G~~~~---~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t~i 252 (304)
T 1rj9_A 183 RGYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGV 252 (304)
T ss_dssp HTCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEE
T ss_pred CCCCEEEecCCCCCCc---hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----CcEE
Confidence 1335779999998643 2222222 2223322 234578788899975332 22233333333333 6789
Q ss_pred EEeCCCCCCC
Q 023214 143 VFTGGDELED 152 (285)
Q Consensus 143 l~nk~D~~~~ 152 (285)
++||.|....
T Consensus 253 ivTh~d~~a~ 262 (304)
T 1rj9_A 253 IVTKLDGTAK 262 (304)
T ss_dssp EEECTTSSCC
T ss_pred EEECCccccc
Confidence 9999997644
No 242
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.68 E-value=9.8e-09 Score=95.73 Aligned_cols=149 Identities=14% Similarity=0.063 Sum_probs=82.1
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-Ccce----------eEEEEEEEeeCCceEE
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTS----------TCEMQRTVLKDGQVVN 72 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~----------~~~~~~~~~~~~~~~~ 72 (285)
.++.+++|+.+++| ..++|+|+||+|||||++.|+|...+..|.... +... ...+.++.. .-...+
T Consensus 356 ~~~l~~isl~i~~G--e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~~t 432 (587)
T 3qf4_A 356 DPVLSGVNFSVKPG--SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQET-VLFSGT 432 (587)
T ss_dssp CCSEEEEEEEECTT--CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSC-CCCSEE
T ss_pred CcceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCC-cCcCcc
Confidence 56889999999999 899999999999999999999988766543211 1100 011111100 000012
Q ss_pred EEeCCCCCCCCCCcHHHHHHHH-----HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---E
Q 023214 73 VIDTPGLFDFSAGSEFVGKEIV-----KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---F 144 (285)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~ 144 (285)
+-|...+.....+.+.+..... ..+.....+.+. .+-..+..+|+++++++...+..+.++ +++++ +
T Consensus 433 v~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~--~~~~~~~~LSgGqrQrv~lARal~~~p---~illlDEpt 507 (587)
T 3qf4_A 433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDS--RVERGGRNFSGGQKQRLSIARALVKKP---KVLILDDCT 507 (587)
T ss_dssp HHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGC--EECSSSCSSCHHHHHHHHHHHHHHTCC---SEEEEESCC
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhh--HhcCCCCCcCHHHHHHHHHHHHHHcCC---CEEEEECCc
Confidence 2222112211122222222111 111111113333 222334589999999999999988765 67777 6
Q ss_pred eCCCCCCCChhcHHHHhh
Q 023214 145 TGGDELEDNDETLEDYLG 162 (285)
Q Consensus 145 nk~D~~~~~~~~l~~~l~ 162 (285)
+..|.... ..+.+.+.
T Consensus 508 s~LD~~~~--~~i~~~l~ 523 (587)
T 3qf4_A 508 SSVDPITE--KRILDGLK 523 (587)
T ss_dssp TTSCHHHH--HHHHHHHH
T ss_pred ccCCHHHH--HHHHHHHH
Confidence 77775433 44444443
No 243
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.67 E-value=1.5e-08 Score=83.66 Aligned_cols=40 Identities=25% Similarity=0.202 Sum_probs=34.4
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++|+.++. + .++|+|+||||||||+++|+|...+.+|
T Consensus 14 ~l~~isl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~p~~G 53 (240)
T 2onk_A 14 FRLNVDFEMGR-D--YCVLLGPTGAGKSVFLELIAGIVKPDRG 53 (240)
T ss_dssp EEEEEEEEECS-S--EEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEeeeEEEECC-E--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 46788898887 3 8999999999999999999999876554
No 244
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.67 E-value=7.1e-09 Score=86.08 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=39.8
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+..+++++|+.+++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 21 ~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 65 (247)
T 2ff7_A 21 SPVILDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65 (247)
T ss_dssp SCEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 356889999999999 899999999999999999999998765543
No 245
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.67 E-value=6.4e-09 Score=87.88 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=39.8
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+.++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 33 ~~~vL~~isl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~ 77 (279)
T 2ihy_A 33 GKTILKKISWQIAKG--DKWILYGLNGAGKTTLLNILNAYEPATSGT 77 (279)
T ss_dssp TEEEEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CEEEEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCeE
Confidence 346789999999999 899999999999999999999998766553
No 246
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.66 E-value=1.3e-07 Score=84.30 Aligned_cols=122 Identities=15% Similarity=0.121 Sum_probs=69.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh------CCcccccccCCC---------------CcceeEEEEEEE----------e--
Q 023214 19 ERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSS---------------GVTSTCEMQRTV----------L-- 65 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~------g~~~~~~~~~~~---------------~~t~~~~~~~~~----------~-- 65 (285)
+..|+++|++|+||||++..|+ |..+......+. ++.......... .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999988 433311111000 110000000000 0
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe
Q 023214 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (285)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n 145 (285)
..+..+.||||||.... +.....++...... ..+|.+++|+|+.... ........+... .....+++|
T Consensus 180 ~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~--~~pd~vlLVvDA~~gq--~a~~~a~~f~~~-----~~i~gVIlT 247 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE---DKALIEEMKQISNV--IHPHEVILVIDGTIGQ--QAYNQALAFKEA-----TPIGSIIVT 247 (443)
T ss_dssp HTTCSEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGGG--GHHHHHHHHHHS-----CTTEEEEEE
T ss_pred hCCCCEEEEECCCcccc---hHHHHHHHHHHHHh--hcCceEEEEEeCCCch--hHHHHHHHHHhh-----CCCeEEEEE
Confidence 02467999999998642 34455556554332 2578999999985322 122222333222 126779999
Q ss_pred CCCCCCC
Q 023214 146 GGDELED 152 (285)
Q Consensus 146 k~D~~~~ 152 (285)
|+|....
T Consensus 248 KlD~~~~ 254 (443)
T 3dm5_A 248 KLDGSAK 254 (443)
T ss_dssp CCSSCSS
T ss_pred CCCCccc
Confidence 9998765
No 247
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.65 E-value=1.6e-08 Score=84.71 Aligned_cols=60 Identities=30% Similarity=0.410 Sum_probs=39.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (285)
.+++++|.+|+|||||+|+|+|......+.. .++|..... .. .+..+.|+||||+.++..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~-~g~T~~~~~--~~--~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ-PGITKGIQW--FS--LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCE--EE--CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC-CCCccceEE--EE--eCCCEEEEECCCcccCcC
Confidence 4999999999999999999999876444332 244444322 11 255789999999998765
No 248
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.65 E-value=4.2e-08 Score=99.28 Aligned_cols=149 Identities=17% Similarity=0.144 Sum_probs=87.2
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCC-----
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTP----- 77 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtp----- 77 (285)
.++++|+|+.+++| .+|+|||+||+|||||++.|++-..+..|.... |+... ..........--.|...|
T Consensus 1092 ~~VL~~isl~I~~G--e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~--~i~~~~lR~~i~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPG--QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIK--TLNPEHTRSQIAIVSQEPTLFDC 1167 (1321)
T ss_dssp SCSEEEEEEEECTT--CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETT--TBCHHHHHTTEEEECSSCCCCSE
T ss_pred CccccceeEEECCC--CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhh--hCCHHHHHhheEEECCCCEeeCc
Confidence 46899999999999 899999999999999999999987766543210 10000 000000000001122222
Q ss_pred --------CCCCCCCCcHHHHHHHHH-----HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE-
Q 023214 78 --------GLFDFSAGSEFVGKEIVK-----CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV- 143 (285)
Q Consensus 78 --------G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil- 143 (285)
|......+++++.+-+.. ++.....+.|.. |-+.+..+|+++++++...+.++.++ +++|+
T Consensus 1168 TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~--vge~G~~LSgGQrQriaiARAllr~~---~ILiLD 1242 (1321)
T 4f4c_A 1168 SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETR--VGDRGTQLSGGQKQRIAIARALVRNP---KILLLD 1242 (1321)
T ss_dssp EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSE--ETTTSCSSCHHHHHHHHHHHHHHSCC---SEEEEE
T ss_pred cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCE--ecCCCcccCHHHHHHHHHHHHHHhCC---CEEEEe
Confidence 222222233443332221 122222234432 22345679999999999999998876 77777
Q ss_pred --EeCCCCCCCChhcHHHHhhh
Q 023214 144 --FTGGDELEDNDETLEDYLGR 163 (285)
Q Consensus 144 --~nk~D~~~~~~~~l~~~l~~ 163 (285)
++.+|..+. ..+.+.+..
T Consensus 1243 EaTSaLD~~tE--~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1243 EATSALDTESE--KVVQEALDR 1262 (1321)
T ss_dssp SCCCSTTSHHH--HHHHHHHTT
T ss_pred CccccCCHHHH--HHHHHHHHH
Confidence 777886554 566666653
No 249
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.64 E-value=1.4e-08 Score=85.45 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=39.5
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
.++++++|+.++.| ..++|+|+||+|||||+++|+|...+..|.
T Consensus 32 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~ 75 (271)
T 2ixe_A 32 VQVLQGLTFTLYPG--KVTALVGPNGSGKSTVAALLQNLYQPTGGK 75 (271)
T ss_dssp SCCEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred ceeeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence 56899999999999 899999999999999999999988766543
No 250
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.62 E-value=7.9e-08 Score=89.85 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=39.1
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++.+++|+.+++| ..++++|+||+|||||++.|+|...+..|
T Consensus 368 ~~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 368 KPVLKDITFHIKPG--QKVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp SCSCCSEEEECCTT--CEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred CccccceEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 56889999999999 89999999999999999999998876654
No 251
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.62 E-value=5.7e-08 Score=90.45 Aligned_cols=43 Identities=33% Similarity=0.311 Sum_probs=39.0
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++.+++|+.+++| ..++++|+||+|||||++.|+|...+..|
T Consensus 354 ~~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G 396 (578)
T 4a82_A 354 APILKDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDVTSG 396 (578)
T ss_dssp CCSEEEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred CcceeeeEEEECCC--CEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 46889999999999 89999999999999999999998876654
No 252
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.61 E-value=3.9e-08 Score=99.55 Aligned_cols=149 Identities=18% Similarity=0.170 Sum_probs=85.6
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCC-
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLF- 80 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~- 80 (285)
+.++++|+|+.+++| ..++|||++|+|||||++.|+|...+..|.... |..... ....+....--++...|.++
T Consensus 430 ~~~vL~~isl~i~~G--~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~--~~~~~lr~~i~~v~Q~~~Lf~ 505 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAG--QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRD--INLEFLRKNVAVVSQEPALFN 505 (1321)
T ss_dssp TSCSEEEEEEEECTT--CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTT--SCHHHHHHHEEEECSSCCCCS
T ss_pred CCceeeceEEeecCC--cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchh--ccHHHHhhcccccCCcceeeC
Confidence 357889999999999 899999999999999999999998766543211 000000 00000000011222333332
Q ss_pred ----------CCCCCcHHHHHHHHH-----HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214 81 ----------DFSAGSEFVGKEIVK-----CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV-- 143 (285)
Q Consensus 81 ----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil-- 143 (285)
.+..+.+.+.+-... ++.....+.|. .|=+-+..+|++.++++...+..+.++ +++|+
T Consensus 506 ~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T--~vGe~G~~LSGGQkQRiaiARAl~~~~---~IliLDE 580 (1321)
T 4f4c_A 506 CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNT--LVGDRGTQLSGGQKQRIAIARALVRNP---KILLLDE 580 (1321)
T ss_dssp EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSS--EESSSSCCCCHHHHHHHHHHHHHTTCC---SEEEEES
T ss_pred CchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCcc--EecCCCCCCCHHHHHHHHHHHHHccCC---CEEEEec
Confidence 222223332222211 11111122333 122335689999999999999998766 78887
Q ss_pred -EeCCCCCCCChhcHHHHhh
Q 023214 144 -FTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 144 -~nk~D~~~~~~~~l~~~l~ 162 (285)
++-.|.... ..+.+.+.
T Consensus 581 ~tSaLD~~te--~~i~~~l~ 598 (1321)
T 4f4c_A 581 ATSALDAESE--GIVQQALD 598 (1321)
T ss_dssp TTTTSCTTTH--HHHHHHHH
T ss_pred ccccCCHHHH--HHHHHHHH
Confidence 777886543 45555553
No 253
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.60 E-value=1.5e-08 Score=85.07 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=39.1
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
.++++++|+.+..| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 20 ~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~ 63 (266)
T 2yz2_A 20 KKALENVSLVINEG--ECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 63 (266)
T ss_dssp EEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred cceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 35789999999999 899999999999999999999988766543
No 254
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.60 E-value=1.2e-08 Score=84.85 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=35.2
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
+.++++++|+++..| ..++|+|+||+|||||+++|+|.
T Consensus 15 ~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 15 GETILKGVNLVVPKG--EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence 356789999999999 89999999999999999999997
No 255
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.59 E-value=9.4e-08 Score=82.50 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=68.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC------CCc-----------ceeEEEEEEEe------------
Q 023214 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS------SGV-----------TSTCEMQRTVL------------ 65 (285)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~------~~~-----------t~~~~~~~~~~------------ 65 (285)
.+| ..|+++|+||+|||||++.|+|...+..+... ... ...+.+..+..
T Consensus 127 ~~g--~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKP--YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSS--EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCC--eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 445 89999999999999999999986544332110 000 00000111100
Q ss_pred ----eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEE
Q 023214 66 ----KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141 (285)
Q Consensus 66 ----~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i 141 (285)
..+..+.++||+|..... .....++....... .+|-.++++|+.... .-...+..+...++ ..+
T Consensus 205 ~~~~~~~~d~vliDtaG~~~~~---~~l~~eL~~i~ral--~~de~llvLDa~t~~--~~~~~~~~~~~~~~-----it~ 272 (328)
T 3e70_C 205 QHAKARGIDVVLIDTAGRSETN---RNLMDEMKKIARVT--KPNLVIFVGDALAGN--AIVEQARQFNEAVK-----IDG 272 (328)
T ss_dssp HHHHHHTCSEEEEEECCSCCTT---TCHHHHHHHHHHHH--CCSEEEEEEEGGGTT--HHHHHHHHHHHHSC-----CCE
T ss_pred HHHHhccchhhHHhhccchhHH---HHHHHHHHHHHHHh--cCCCCEEEEecHHHH--HHHHHHHHHHHhcC-----CCE
Confidence 013457889999986432 22334444333222 357788899974331 12222333332222 578
Q ss_pred EEEeCCCCCCC
Q 023214 142 VVFTGGDELED 152 (285)
Q Consensus 142 il~nk~D~~~~ 152 (285)
+++||+|....
T Consensus 273 iilTKlD~~a~ 283 (328)
T 3e70_C 273 IILTKLDADAR 283 (328)
T ss_dssp EEEECGGGCSC
T ss_pred EEEeCcCCccc
Confidence 99999997654
No 256
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.59 E-value=1.1e-07 Score=88.73 Aligned_cols=43 Identities=30% Similarity=0.402 Sum_probs=39.1
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+++++| ..++|+|+||+|||||++.|+|...+..|
T Consensus 356 ~~~l~~v~~~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 398 (582)
T 3b60_A 356 VPALRNINLKIPAG--KTVALVGRSGSGKSTIASLITRFYDIDEG 398 (582)
T ss_dssp CCSEEEEEEEECTT--CEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred CccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence 56889999999999 89999999999999999999998876654
No 257
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.58 E-value=1.7e-08 Score=84.77 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=35.7
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
+.++++++|+.++.| ..++|+|+||+|||||+++|+|..
T Consensus 32 ~~~vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 32 DKAILRGLSLDVHPG--EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999 899999999999999999999973
No 258
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.56 E-value=2.3e-08 Score=83.01 Aligned_cols=40 Identities=23% Similarity=0.162 Sum_probs=36.5
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~ 46 (285)
++++++|+.+.+| ..++|+|+||+|||||+++|+|...+.
T Consensus 14 ~vl~~vsl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 14 TRLGPLSGEVRAG--EILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp TTEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 4678899999999 899999999999999999999988665
No 259
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.56 E-value=9e-08 Score=85.68 Aligned_cols=124 Identities=16% Similarity=0.121 Sum_probs=68.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcc------cccccCCC---------------C--------cceeE-EE--EEEE
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGRRA------FKSRASSS---------------G--------VTSTC-EM--QRTV 64 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~~~------~~~~~~~~---------------~--------~t~~~-~~--~~~~ 64 (285)
+.+..|+++|++|+||||+++.|++... ......+. + .+... .. ....
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~ 176 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME 176 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH
Confidence 3346899999999999999999987421 10000000 0 00000 00 0000
Q ss_pred eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccc-CeEEEE
Q 023214 65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF-DYMIVV 143 (285)
Q Consensus 65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~iil 143 (285)
...+..+.||||||.... +.....++... .....+|.+++|+|+....+ .+..+.. |... . ....++
T Consensus 177 ~~~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~~-----~~~~~~~-~~~~-~~~i~gvV 244 (432)
T 2v3c_C 177 KFKKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQQ-----AGIQAKA-FKEA-VGEIGSII 244 (432)
T ss_dssp TTSSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGGG-----HHHHHHH-HHTT-SCSCEEEE
T ss_pred HhhCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccHH-----HHHHHHH-Hhhc-ccCCeEEE
Confidence 013567999999998742 33344444332 22336899999999853321 2222322 2221 2 258899
Q ss_pred EeCCCCCCC
Q 023214 144 FTGGDELED 152 (285)
Q Consensus 144 ~nk~D~~~~ 152 (285)
+||+|....
T Consensus 245 lnK~D~~~~ 253 (432)
T 2v3c_C 245 VTKLDGSAK 253 (432)
T ss_dssp EECSSSCST
T ss_pred EeCCCCccc
Confidence 999998654
No 260
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.54 E-value=6.7e-08 Score=86.19 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=70.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh------CCcccccccCC---------------CCcceeEEEE----------EEEe--
Q 023214 19 ERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASS---------------SGVTSTCEMQ----------RTVL-- 65 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~------g~~~~~~~~~~---------------~~~t~~~~~~----------~~~~-- 65 (285)
...|+++|++|+||||++..|+ |..+....... .++....... ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 3799999999999999999988 33321110000 0111000000 0000
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEe
Q 023214 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (285)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~n 145 (285)
..+..+.||||||..... .+.....++....... .+|.+++|+|+... .........+...++ +..+++|
T Consensus 177 ~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~-----~~gVIlT 246 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQASP-----IGSVIIT 246 (433)
T ss_dssp TTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHCS-----SEEEEEE
T ss_pred hcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcccC-----CcEEEEe
Confidence 025679999999976411 2334456666554433 46889999998532 122233333333322 6889999
Q ss_pred CCCCCCCC
Q 023214 146 GGDELEDN 153 (285)
Q Consensus 146 k~D~~~~~ 153 (285)
|+|.....
T Consensus 247 KlD~~a~~ 254 (433)
T 3kl4_A 247 KMDGTAKG 254 (433)
T ss_dssp CGGGCSCH
T ss_pred cccccccc
Confidence 99987553
No 261
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.53 E-value=2.1e-07 Score=86.89 Aligned_cols=42 Identities=33% Similarity=0.403 Sum_probs=38.4
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
++++++|+++++| ..++|+|+||+|||||++.|+|...+..|
T Consensus 358 ~vl~~isl~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 399 (595)
T 2yl4_A 358 PIFQDFSLSIPSG--SVTALVGPSGSGKSTVLSLLLRLYDPASG 399 (595)
T ss_dssp EEEEEEEEEECTT--CEEEEECCTTSSSTHHHHHHTTSSCCSEE
T ss_pred ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 5889999999999 89999999999999999999998876654
No 262
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.52 E-value=2.2e-08 Score=85.41 Aligned_cols=64 Identities=27% Similarity=0.335 Sum_probs=37.2
Q ss_pred ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (285)
+.+..| ..++|+|+||+|||||+|+|+|...+.++.... ++|..... ... . ...++||||+..+
T Consensus 168 ~~~~~G--~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~-~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 168 IPHFQD--KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT-S--GGLVADTPGFSSL 237 (307)
T ss_dssp GGGGTT--SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEE-T--TEEEESSCSCSSC
T ss_pred HhhcCC--CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhc-C--CEEEecCCCcccc
Confidence 445567 799999999999999999999988766654332 22322111 111 1 3589999998754
No 263
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.52 E-value=6e-07 Score=76.45 Aligned_cols=130 Identities=14% Similarity=0.071 Sum_probs=69.5
Q ss_pred ccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc------ccccccCCCCc-c----------eeEEEEEE---------
Q 023214 10 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRR------AFKSRASSSGV-T----------STCEMQRT--------- 63 (285)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~------~~~~~~~~~~~-t----------~~~~~~~~--------- 63 (285)
+++... + ..|+++|++|+||||++..|++.. +...+...... . ........
T Consensus 92 i~~~~~-~--~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~ 168 (297)
T 1j8m_F 92 VIPDKI-P--YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGI 168 (297)
T ss_dssp CSCSSS-S--EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHH
T ss_pred cccCCC-C--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHH
Confidence 555544 4 799999999999999999988432 21111111000 0 00000000
Q ss_pred -----E-ee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccc
Q 023214 64 -----V-LK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI 136 (285)
Q Consensus 64 -----~-~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (285)
. .. .+..+.||||||.... ........++...... ..+|.+++|+++... . ..+..++.. ...
T Consensus 169 ~~~~l~~~~~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~~--~~~d~vllVvda~~g--~---~~~~~~~~~-~~~- 238 (297)
T 1j8m_F 169 AKRGVEKFLSEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYEA--IKPDEVTLVIDASIG--Q---KAYDLASKF-NQA- 238 (297)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--G---GHHHHHHHH-HHT-
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHHH--hcCCEEEEEeeCCch--H---HHHHHHHHH-Hhh-
Confidence 0 00 3457999999998751 1222334444332221 256889999998522 1 223333322 211
Q ss_pred cCeEEEEEeCCCCCCC
Q 023214 137 FDYMIVVFTGGDELED 152 (285)
Q Consensus 137 ~~~~iil~nk~D~~~~ 152 (285)
.....+++||+|....
T Consensus 239 ~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 239 SKIGTIIITKMDGTAK 254 (297)
T ss_dssp CTTEEEEEECGGGCTT
T ss_pred CCCCEEEEeCCCCCcc
Confidence 1237789999997654
No 264
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.52 E-value=2.6e-07 Score=82.69 Aligned_cols=108 Identities=18% Similarity=0.147 Sum_probs=57.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC-----------------cccccccCCCCcceeEEEEE----EEeeC--CceEEE
Q 023214 17 NGERTVVLVGRTGNGKSATGNSILGR-----------------RAFKSRASSSGVTSTCEMQR----TVLKD--GQVVNV 73 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~g~-----------------~~~~~~~~~~~~t~~~~~~~----~~~~~--~~~~~l 73 (285)
.+...|+|+|+.++|||||+|.|+|. ..|..+.....+|....... ...+. ...+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 34468999999999999999999974 12322222222222221111 11111 245999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 023214 74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130 (285)
Q Consensus 74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (285)
+||||+.++..+. .....+. ..+.--.+.++|-+. ..+...+...|.++.+
T Consensus 145 lDTeG~~~~~~~~-~~d~~if---al~~lLSs~~IyN~~--~~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 145 MDTQGTFDSQSTL-RDSATVF---ALSTMISSIQVYNLS--QNVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEEECCCSSHHHH-HHHHHHH---HHHHHHCSEEEEEES--SSCCHHHHHHHHHHHH
T ss_pred EcCCcccccccch-hhhHHHH---HHHHHHhhHHHHhhc--ccccHHHHHHHHHHHH
Confidence 9999998753211 1111111 111111245454443 4788888777776555
No 265
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.51 E-value=4.6e-08 Score=81.78 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=36.5
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 45 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~ 45 (285)
.++++++|+.+++| ..++|+|+||+|||||+++|+|...+
T Consensus 33 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~ 72 (260)
T 2ghi_A 33 HRTLKSINFFIPSG--TTCALVGHTGSGKSTIAKLLYRFYDA 72 (260)
T ss_dssp SCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CceeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence 35889999999999 89999999999999999999998753
No 266
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.50 E-value=1.1e-07 Score=87.53 Aligned_cols=134 Identities=10% Similarity=-0.074 Sum_probs=73.5
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 86 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 86 (285)
+++.++.+.+| ..++|+|+||+|||||+++|+|...+..|..... ....+ +...|... +..+.
T Consensus 302 l~~~~~~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~--~~i~~------------v~Q~~~~~-~~~tv 364 (538)
T 1yqt_A 302 LEVEPGEIKKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD--LTVAY------------KPQYIKAD-YEGTV 364 (538)
T ss_dssp EEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC--CCEEE------------ECSSCCCC-CSSBH
T ss_pred EEeCccccCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC--ceEEE------------EecCCcCC-CCCcH
Confidence 34445566788 8999999999999999999999987766554321 11111 11122211 11122
Q ss_pred HHHHHHH-H------HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE---EeCCCCCCCChhc
Q 023214 87 EFVGKEI-V------KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV---FTGGDELEDNDET 156 (285)
Q Consensus 87 ~~~~~~~-~------~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil---~nk~D~~~~~~~~ 156 (285)
.+..... . ..+...+.....--+.-..-..+|+++++++..++.+...+ +++|+ ++++|.... ..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p---~lLlLDEPt~~LD~~~~--~~ 439 (538)
T 1yqt_A 365 YELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDA---DIYLLDEPSAYLDVEQR--LA 439 (538)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC---SEEEEECTTTTCCHHHH--HH
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCC---CEEEEeCCcccCCHHHH--HH
Confidence 2211111 0 00111111111000000011369999999999988887655 67777 888886654 45
Q ss_pred HHHHhh
Q 023214 157 LEDYLG 162 (285)
Q Consensus 157 l~~~l~ 162 (285)
+.+.+.
T Consensus 440 i~~~l~ 445 (538)
T 1yqt_A 440 VSRAIR 445 (538)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 267
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.47 E-value=4.6e-07 Score=79.24 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=45.7
Q ss_pred EEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC--------CHHHHHHHHHHHHH
Q 023214 60 MQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQTL 131 (285)
Q Consensus 60 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~--------~~~~~~~l~~~~~~ 131 (285)
...+.. .+..+.++||+|..... .....++.++++++||+|+++.- ...-...+.++...
T Consensus 193 ~~~~~~-~~~~l~i~Dt~Gq~~~r-----------~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i 260 (362)
T 1zcb_A 193 EYDFEI-KNVPFKMVDVGGQRSER-----------KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETI 260 (362)
T ss_dssp EEEEEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHH
T ss_pred EEEeee-CCeEEEEEeccchhhhh-----------hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHH
Confidence 334444 57789999999975432 22346788999999999997410 11112223333333
Q ss_pred hCcc--ccCeEEEEEeCCCCC
Q 023214 132 FGKK--IFDYMIVVFTGGDEL 150 (285)
Q Consensus 132 ~~~~--~~~~~iil~nk~D~~ 150 (285)
+... ...|+|+++||.|+.
T Consensus 261 ~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 261 VNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp HTCGGGTTSEEEEEEECHHHH
T ss_pred hcchhhCCCCEEEEEEChhhh
Confidence 3211 124999999999975
No 268
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.47 E-value=1.1e-07 Score=77.17 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
.++|+++|++|+|||||++.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 379999999999999999999865
No 269
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.46 E-value=4.9e-08 Score=75.29 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=35.6
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+.+++|+.+.+| ..++|+|+||+|||||++.|+|.. +..+.
T Consensus 22 ~l~~vsl~i~~G--e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 22 AEILLKLHTEKA--IMVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp HHHHHHHCCSSC--EEEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred HHhccccccCCC--CEEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 456788999999 899999999999999999999987 55554
No 270
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.43 E-value=1e-06 Score=76.04 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=49.9
Q ss_pred EEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC----------CCCCHHHHHHHHHH
Q 023214 59 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR----------SRFSQEEEAALHSL 128 (285)
Q Consensus 59 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~----------~~~~~~~~~~l~~~ 128 (285)
....... .+..+.++||+|.. .++.....++.+++++++|+|.+ +.-+ -...+.++
T Consensus 152 ~~~~~~~-~~v~l~iwDtaGQe-----------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr--~~es~~~~ 217 (340)
T 4fid_A 152 HEYDFVV-KDIPFHLIDVGGQR-----------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSR--LTESIAVF 217 (340)
T ss_dssp EEEEEES-SSCEEEEEECCSCH-----------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBH--HHHHHHHH
T ss_pred EEEEEEe-eeeeeccccCCCcc-----------cccccHHHHhccCCEEEEEEECCccccccccccccch--HHHHHHHH
Confidence 3344444 57889999999953 34445567899999999999986 1111 11223333
Q ss_pred HHHhCcc--ccCeEEEEEeCCCCCC
Q 023214 129 QTLFGKK--IFDYMIVVFTGGDELE 151 (285)
Q Consensus 129 ~~~~~~~--~~~~~iil~nk~D~~~ 151 (285)
...+..+ ...|+++++||.|+..
T Consensus 218 ~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 218 KDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred HHHhhhhccCCCeEEEEEECchhhh
Confidence 3332211 1238999999999753
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.41 E-value=3.2e-07 Score=78.40 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=70.3
Q ss_pred ccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCc-----------ceeEEEEEEE--------
Q 023214 10 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGV-----------TSTCEMQRTV-------- 64 (285)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~------~~~~~-----------t~~~~~~~~~-------- 64 (285)
+++....+ ..|+++|++|+||||++..|++...+..+. ..... ..........
T Consensus 97 ~~~~~~~~--~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v 174 (306)
T 1vma_A 97 LNVPPEPP--FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAV 174 (306)
T ss_dssp CCCCSSSC--EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHH
T ss_pred CcccCCCC--eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHH
Confidence 34444445 799999999999999999988654322111 00000 0000000000
Q ss_pred --------eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh---ccC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 023214 65 --------LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM---AKD-GIHAVLVVFSVRSRFSQEEEAALHSLQTLF 132 (285)
Q Consensus 65 --------~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~ 132 (285)
...+..+.|+||||.. .....+..++...... ..+ .+|.+++|+++. +. ...+..++...
T Consensus 175 ~~~al~~a~~~~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~--~~~l~~a~~~~ 246 (306)
T 1vma_A 175 AFDAVAHALARNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TG--QNGLVQAKIFK 246 (306)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GH--HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CC--HHHHHHHHHHH
Confidence 1134569999999963 2334444444443322 122 478889999975 22 22233333221
Q ss_pred CccccCeEEEEEeCCCCCCCC
Q 023214 133 GKKIFDYMIVVFTGGDELEDN 153 (285)
Q Consensus 133 ~~~~~~~~iil~nk~D~~~~~ 153 (285)
. . ....-+++||.|.....
T Consensus 247 ~-~-~~i~gvVlTk~D~~~~g 265 (306)
T 1vma_A 247 E-A-VNVTGIILTKLDGTAKG 265 (306)
T ss_dssp H-H-SCCCEEEEECGGGCSCT
T ss_pred h-c-CCCCEEEEeCCCCccch
Confidence 1 1 11466778999976553
No 272
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.39 E-value=9.6e-08 Score=77.72 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=24.5
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
++-++++|+.++.| ..++|+|+||+|||||++.|+|..
T Consensus 10 ~~~l~~isl~i~~G--~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 10 HSSGLVPRGSMNNI--YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------------CC--CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccccCCceecCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence 34578899999999 899999999999999999999855
No 273
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.39 E-value=1.6e-07 Score=87.57 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=34.6
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS 50 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~ 50 (285)
+++.++.+..| ..++|+|+||+|||||+++|+|...+.+|..
T Consensus 372 l~~~~~~v~~G--ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 413 (607)
T 3bk7_A 372 LEVEPGEIRKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413 (607)
T ss_dssp EEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred EEecccccCCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 34445567788 8999999999999999999999987766554
No 274
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.38 E-value=1.4e-07 Score=78.18 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=24.9
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
|+..+++++||.+..| ..|+|+|+||||||||++.|+|..
T Consensus 10 ~~~~~l~~isl~i~~g--~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRP--FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -------------CCS--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceeecceeccCCCC--EEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999 899999999999999999998753
No 275
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.38 E-value=1.5e-07 Score=82.96 Aligned_cols=41 Identities=34% Similarity=0.484 Sum_probs=37.3
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
|+..+.+++|+.+..| ..++|+|+||+|||||+++|+|...
T Consensus 32 ~~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 32 GGNAILENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp SSCCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCeEEeeceeEEEcCC--CEEEEECCCCChHHHHHHHHhCCCC
Confidence 3457889999999999 8999999999999999999999875
No 276
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.36 E-value=3.4e-06 Score=72.48 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=51.2
Q ss_pred ceeEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC-------CCCCHH-HHHHHH
Q 023214 55 TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SRFSQE-EEAALH 126 (285)
Q Consensus 55 t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-------~~~~~~-~~~~l~ 126 (285)
|+......... .+..+.++||.|.. ..+.....++.+++++++|++.+ +.-+.. -...+.
T Consensus 154 TiGi~~~~~~~-~~v~l~iwDtgGQe-----------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~ 221 (327)
T 3ohm_A 154 TTGIIEYPFDL-QSVIFRMVDVGGQR-----------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA 221 (327)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH
T ss_pred eeeEEEEEEEe-eceeeEEEEcCCch-----------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH
Confidence 33333444455 67889999999964 23334457899999999999764 111111 123334
Q ss_pred HHHHHhCcc--ccCeEEEEEeCCCCC
Q 023214 127 SLQTLFGKK--IFDYMIVVFTGGDEL 150 (285)
Q Consensus 127 ~~~~~~~~~--~~~~~iil~nk~D~~ 150 (285)
++...+..+ ...|+++++||.|+.
T Consensus 222 ~~~~i~~~~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 222 LFRTIITYPWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECHHHH
T ss_pred HHHHHhhhhccCCceEEEEEECchhh
Confidence 444444322 124899999999975
No 277
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.35 E-value=7.9e-07 Score=89.86 Aligned_cols=43 Identities=30% Similarity=0.253 Sum_probs=38.8
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++++|+.+++| ..++|+|+||+|||||++.|+|...+..|
T Consensus 403 ~~vL~~isl~i~~G--~~~~ivG~sGsGKSTl~~ll~g~~~~~~G 445 (1284)
T 3g5u_A 403 VQILKGLNLKVKSG--QTVALVGNSGCGKSTTVQLMQRLYDPLDG 445 (1284)
T ss_dssp CCSEEEEEEEECTT--CEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred CcceecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 36899999999999 89999999999999999999998876554
No 278
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.33 E-value=2.1e-06 Score=74.79 Aligned_cols=81 Identities=10% Similarity=0.091 Sum_probs=50.2
Q ss_pred EEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC--------CHHHHHHHHHHH
Q 023214 58 CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQ 129 (285)
Q Consensus 58 ~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~--------~~~~~~~l~~~~ 129 (285)
.....+.+ .+..+.++||+|..... .....++.++|++++|+|.++.- ...-.....++.
T Consensus 183 i~~~~~~~-~~~~l~iwDt~GQe~~r-----------~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~ 250 (353)
T 1cip_A 183 IVETHFTF-KDLHFKMFDVGGQRSER-----------KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 250 (353)
T ss_dssp EEEEEEEE-TTEEEEEEEECCSGGGG-----------GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHH
T ss_pred eEEEEEee-CCeeEEEEeCCCchhhh-----------HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHH
Confidence 33344445 57789999999976432 12345789999999999997421 111223333444
Q ss_pred HHhCcc--ccCeEEEEEeCCCCC
Q 023214 130 TLFGKK--IFDYMIVVFTGGDEL 150 (285)
Q Consensus 130 ~~~~~~--~~~~~iil~nk~D~~ 150 (285)
..+..+ ...|+++++||.|+.
T Consensus 251 ~i~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 251 SICNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp HHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHcCccccCCcEEEEEECcCch
Confidence 433311 124999999999974
No 279
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.33 E-value=2.5e-07 Score=93.46 Aligned_cols=147 Identities=17% Similarity=0.153 Sum_probs=82.2
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-CcceeEEEEEEEeeCCceEEEEeCCCCCC--
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFD-- 81 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~-- 81 (285)
++++++|+.+++| .+++|+|+||+|||||++.|+|...+..|.... +..... .....+ ...--.+...|-+++
T Consensus 1047 ~~l~~vsl~i~~G--e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~-~~~~~~-r~~i~~v~Q~~~l~~~t 1122 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKG--QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ-LNVQWL-RAQLGIVSQEPILFDCS 1122 (1284)
T ss_dssp CSBSSCCEEECSS--SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTS-SCHHHH-TTSCEEEESSCCCCSSB
T ss_pred eeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEccc-CCHHHH-HhceEEECCCCcccccc
Confidence 5889999999999 899999999999999999999988766553211 111000 000000 000011222222111
Q ss_pred -----------CCCCcHHHHHHHHH-----HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEE--
Q 023214 82 -----------FSAGSEFVGKEIVK-----CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV-- 143 (285)
Q Consensus 82 -----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil-- 143 (285)
...+...+...... ++.....+.|.. |-+.+..+|+++++++...+.++.++ +++++
T Consensus 1123 i~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~--vge~G~~LSgGq~Qrv~iARal~~~p---~iLiLDE 1197 (1284)
T 3g5u_A 1123 IAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTR--VGDKGTQLSGGQKQRIAIARALVRQP---HILLLDE 1197 (1284)
T ss_dssp HHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCB--CSTTSCSSCHHHHHHHHHHHHHHHCC---SSEEEES
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccc--cCCCCCccCHHHHHHHHHHHHHHcCC---CEEEEeC
Confidence 11122222222211 111111122221 11234579999999999999887765 77777
Q ss_pred -EeCCCCCCCChhcHHHHhh
Q 023214 144 -FTGGDELEDNDETLEDYLG 162 (285)
Q Consensus 144 -~nk~D~~~~~~~~l~~~l~ 162 (285)
++.+|.... ..+.+.+.
T Consensus 1198 pTs~lD~~~~--~~i~~~l~ 1215 (1284)
T 3g5u_A 1198 ATSALDTESE--KVVQEALD 1215 (1284)
T ss_dssp CSSSCCHHHH--HHHHHHHH
T ss_pred CcccCCHHHH--HHHHHHHH
Confidence 888886554 55555554
No 280
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.33 E-value=7.1e-07 Score=76.21 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=39.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----C--cceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (285)
..| ..++|+|+||+|||||+|+|+ ...+.+|.... | +|.... .... .....++||||+..+
T Consensus 163 l~G--~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~--~~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 163 LEG--FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPF--GKGSFVGDTPGFSKV 229 (302)
T ss_dssp TTT--CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEE--TTTEEEESSCCCSSC
T ss_pred ccC--cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEc--CCCcEEEECcCcCcC
Confidence 345 789999999999999999999 77666654332 2 222211 1111 123578999998743
No 281
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.32 E-value=1.9e-07 Score=85.96 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=32.6
Q ss_pred ccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 10 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
.++.+..| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 287 ~~~~i~~G--ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 324 (538)
T 3ozx_A 287 DNGEAKEG--EIIGILGPNGIGKTTFARILVGEITADEGS 324 (538)
T ss_dssp CCEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSBCC
T ss_pred ccceECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 35567888 899999999999999999999998776654
No 282
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.32 E-value=1.3e-06 Score=75.06 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=73.7
Q ss_pred cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCc--------------ceeEEEE-EEE--
Q 023214 8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV--------------TSTCEMQ-RTV-- 64 (285)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~------~~~~~~--------------t~~~~~~-~~~-- 64 (285)
.++++....+ ..|+++|++|+||||++..|++......+ ...... .....+. ...
T Consensus 96 ~~l~~~~~~~--~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 96 YRIDFKENRL--NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp CCCCCCTTSC--EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cCccccCCCC--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 4567776666 89999999999999999998765432111 001000 0001111 000
Q ss_pred --------------eeCCceEEEEeCCCCCCCCCCcHHHHHHHHH---HHhhccC-CccEEEEEEeCCCCCCHHHHHHHH
Q 023214 65 --------------LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK---CIGMAKD-GIHAVLVVFSVRSRFSQEEEAALH 126 (285)
Q Consensus 65 --------------~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~l~ 126 (285)
...+..+.||||||.... ......++.. .+....+ .+|.+++|+++... ...+.
T Consensus 174 ~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-----~~~l~ 245 (320)
T 1zu4_A 174 ADPASVVFDAIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-----QNGVI 245 (320)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-----HHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-----HHHHH
Confidence 013456999999997631 2223333332 2222223 37888999998622 23344
Q ss_pred HHHHHhCccccCeEEEEEeCCCCCCC
Q 023214 127 SLQTLFGKKIFDYMIVVFTGGDELED 152 (285)
Q Consensus 127 ~~~~~~~~~~~~~~iil~nk~D~~~~ 152 (285)
.++. |... ....-+++||.|....
T Consensus 246 ~~~~-~~~~-~~i~GvVltk~d~~~~ 269 (320)
T 1zu4_A 246 QAEE-FSKV-ADVSGIILTKMDSTSK 269 (320)
T ss_dssp HHHH-HTTT-SCCCEEEEECGGGCSC
T ss_pred HHHH-Hhhc-CCCcEEEEeCCCCCCc
Confidence 4444 3322 2245588999997644
No 283
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.30 E-value=2.7e-07 Score=80.29 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc-ccccc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRA-FKSRA 49 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~-~~~~~ 49 (285)
..++|+|+||+|||||+|+|+|... +.++.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~ 246 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTND 246 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCC
Confidence 6899999999999999999999887 65554
No 284
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.27 E-value=7.4e-06 Score=73.29 Aligned_cols=124 Identities=17% Similarity=0.142 Sum_probs=67.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh-------CCcccccccCCCCcc-----------eeEEEEE--------------E-
Q 023214 17 NGERTVVLVGRTGNGKSATGNSIL-------GRRAFKSRASSSGVT-----------STCEMQR--------------T- 63 (285)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlln~l~-------g~~~~~~~~~~~~~t-----------~~~~~~~--------------~- 63 (285)
+++..|+++|++|+||||+...|+ |..+......+.... ....... .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 334789999999999999998888 555432111110000 0000000 0
Q ss_pred Eee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEE
Q 023214 64 VLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142 (285)
Q Consensus 64 ~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ii 142 (285)
... .+..++||||||.... .......+..... ...++.+++|+++....+. +..+.. |.... ...-+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~~~-----~~~~~~-f~~~l-~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQDA-----ANTAKA-FNEAL-PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCTTH-----HHHHHH-HHHHS-CCCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhHHH-----HHHHHH-HhccC-CCeEE
Confidence 001 3567999999997643 2334444443322 2357889999998633221 222222 22211 12457
Q ss_pred EEeCCCCCCC
Q 023214 143 VFTGGDELED 152 (285)
Q Consensus 143 l~nk~D~~~~ 152 (285)
++||+|....
T Consensus 246 VlnK~D~~~~ 255 (433)
T 2xxa_A 246 VLTKVDGDAR 255 (433)
T ss_dssp EEECTTSSSC
T ss_pred EEecCCCCcc
Confidence 8999997654
No 285
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.25 E-value=2.6e-06 Score=75.83 Aligned_cols=129 Identities=21% Similarity=0.194 Sum_probs=69.7
Q ss_pred cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCc-c----------eeEEEEEE-------
Q 023214 8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-T----------STCEMQRT------- 63 (285)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~------~~~~~~-t----------~~~~~~~~------- 63 (285)
.++++. .+ ..|+++|++|+||||++..|++......+ ...... . ..+..+..
T Consensus 91 ~~i~l~--~~--~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~ 166 (425)
T 2ffh_A 91 RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPE 166 (425)
T ss_dssp CCCCCC--SS--EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHH
T ss_pred ccccCC--CC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHH
Confidence 345554 34 78999999999999999998854432111 000000 0 00000110
Q ss_pred -------Ee--eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Q 023214 64 -------VL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK 134 (285)
Q Consensus 64 -------~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~ 134 (285)
.. ..+..+.||||||.... +.....++....... .+|.+++|+|+... ...+..+.. |..
T Consensus 167 ~i~~~~l~~~~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg-----q~av~~a~~-f~~ 235 (425)
T 2ffh_A 167 SIRRRVEEKARLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG-----QEALSVARA-FDE 235 (425)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT-----THHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch-----HHHHHHHHH-HHh
Confidence 00 13456999999997643 333445554443322 56888999998522 122233322 221
Q ss_pred cccCeEEEEEeCCCCCCC
Q 023214 135 KIFDYMIVVFTGGDELED 152 (285)
Q Consensus 135 ~~~~~~iil~nk~D~~~~ 152 (285)
. ....-+++||.|....
T Consensus 236 ~-l~i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 236 K-VGVTGLVLTKLDGDAR 252 (425)
T ss_dssp H-TCCCEEEEESGGGCSS
T ss_pred c-CCceEEEEeCcCCccc
Confidence 1 1246778999997644
No 286
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.25 E-value=4e-07 Score=71.07 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=27.8
Q ss_pred CccccCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214 9 DWELTSPSNGERTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g 41 (285)
++|+.++.| ..++++|+||||||||++++++
T Consensus 1 ~vsl~i~~g--ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 1 SMKLTIPEL--SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp CEEEEEESS--EEEEEECCTTSCHHHHHHHHSC
T ss_pred CccccCCCC--EEEEEECCCCCCHHHHHHHHcc
Confidence 468889999 8999999999999999998664
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.25 E-value=2.1e-07 Score=79.31 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=32.8
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
+++++++.+++| ..++|+|+||+|||||+++|+|..
T Consensus 115 vL~~vsl~i~~G--e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKK--NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTC--SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCC--CEEEEECCCCCcHHHHHHHHhhhc
Confidence 567889999999 899999999999999999999754
No 288
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.25 E-value=4.5e-07 Score=77.43 Aligned_cols=59 Identities=27% Similarity=0.344 Sum_probs=37.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----C--cceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (285)
..++++|+||+|||||+|+|+|...+.+|.... + +|.... .... .....++|+||+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~~--~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLKF--DFGGYVVDTPGFANL 234 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEEC--TTSCEEESSCSSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEEc--CCCCEEEECcCCCcc
Confidence 689999999999999999999988776654332 1 221111 1111 223578999998654
No 289
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.20 E-value=9.9e-07 Score=81.25 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=35.9
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
...+++ .+.+| ..++|+|+||+|||||+++|+|...+..|.
T Consensus 37 ~l~~vs-~i~~G--e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 37 VLYRLP-VVKEG--MVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred cccCcC-cCCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 567777 88899 899999999999999999999988776654
No 290
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.19 E-value=2.2e-05 Score=69.95 Aligned_cols=109 Identities=18% Similarity=0.174 Sum_probs=62.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHh-------C----------CcccccccCCCCcceeEEEEE----EEeeCC--ceEE
Q 023214 16 SNGERTVVLVGRTGNGKSATGNSIL-------G----------RRAFKSRASSSGVTSTCEMQR----TVLKDG--QVVN 72 (285)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlln~l~-------g----------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~ 72 (285)
..+...|+|+|+.++|||+|+|.|+ | ...|..+....++|....... ...+.+ ..+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 3455788899999999999999775 2 133444333334444433321 222223 3599
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 023214 73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130 (285)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (285)
|+||.|+++...+...-..-+.-.+..+ +.+||-.. ..++..+...|.++.+
T Consensus 144 llDTEG~~d~~~~~~~d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~te 195 (457)
T 4ido_A 144 LMDTQGTFDSQSTLRDSATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTE 195 (457)
T ss_dssp EEEECCBTCTTCCHHHHHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHH
T ss_pred EEeccCCCCcccCccccHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHH
Confidence 9999999987554322111111111112 45555544 4677777777766654
No 291
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.18 E-value=1.4e-06 Score=74.14 Aligned_cols=129 Identities=17% Similarity=0.164 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccc-------CCC---------------CcceeEEEE-------EEEeeCCce
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA-------SSS---------------GVTSTCEMQ-------RTVLKDGQV 70 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~~~~~-------~~~---------------~~t~~~~~~-------~~~~~~~~~ 70 (285)
..|+++|+||+||||++..|++...+..|. ... +........ -... .+..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~d 184 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYD 184 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCC
Confidence 699999999999999999988654321220 000 000000000 0001 3567
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCCCCC
Q 023214 71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (285)
Q Consensus 71 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~D~~ 150 (285)
+.|+||||.... ......++...+. ...++..++|++++.. .. .+..+...|. .....-+++||.|..
T Consensus 185 lvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~~---~~~~~~~~~~--~l~~~giVltk~D~~ 252 (296)
T 2px0_A 185 HVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--YE---DMKHIVKRFS--SVPVNQYIFTKIDET 252 (296)
T ss_dssp EEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--HH---HHHHHTTTTS--SSCCCEEEEECTTTC
T ss_pred EEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--HH---HHHHHHHHHh--cCCCCEEEEeCCCcc
Confidence 999999998742 2223333433321 1236778889887532 11 2222333333 122455677999977
Q ss_pred CCChhcHHHHhh
Q 023214 151 EDNDETLEDYLG 162 (285)
Q Consensus 151 ~~~~~~l~~~l~ 162 (285)
... ..+.+.+.
T Consensus 253 ~~~-g~~~~~~~ 263 (296)
T 2px0_A 253 TSL-GSVFNILA 263 (296)
T ss_dssp SCC-HHHHHHHH
T ss_pred cch-hHHHHHHH
Confidence 543 33444444
No 292
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.17 E-value=7.3e-07 Score=71.77 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=24.4
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
++..+ .++..| ..++|+|+||||||||+++|+|..
T Consensus 10 ~~~~~--~~i~~G--ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 10 PTARG--QPAAVG--RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -----------CC--CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCC--CCCCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence 34444 678888 899999999999999999999865
No 293
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.17 E-value=1.9e-05 Score=76.89 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=30.9
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHH
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSI 39 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l 39 (285)
+..+.+++++.+..| ..++|+||||+|||||++++
T Consensus 648 ~~~v~ndisl~~~~g--~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQ--MFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCCCEEEEEETTTB--CEEEEECCTTSSHHHHHHHH
T ss_pred ceeecccceeecCCC--eEEEEECCCCCCHHHHHHHH
Confidence 345677889999888 79999999999999999999
No 294
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.15 E-value=4.7e-07 Score=88.01 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=39.3
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
.++++++|+.+..| .+++|+|+||+|||||+++|+|...+.+|.
T Consensus 686 ~~iL~dVSl~I~~G--eivaIiGpNGSGKSTLLklLaGll~P~sG~ 729 (986)
T 2iw3_A 686 KPQITDINFQCSLS--SRIAVIGPNGAGKSTLINVLTGELLPTSGE 729 (986)
T ss_dssp SCSEEEEEEEEETT--CEEEECSCCCHHHHHHHHHHTTSSCCSEEE
T ss_pred ceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 46789999999999 899999999999999999999998766543
No 295
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.15 E-value=1.5e-06 Score=81.06 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=36.0
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
+..+++ .+..| ..++|+|+||+|||||+++|+|...+..|.
T Consensus 107 ~l~~vs-~i~~G--e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 107 VLYRLP-IVKDG--MVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred eeCCCC-CCCCC--CEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 567777 78889 899999999999999999999998776655
No 296
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.14 E-value=2.5e-06 Score=72.54 Aligned_cols=129 Identities=20% Similarity=0.178 Sum_probs=70.3
Q ss_pred cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCc-ce----------eEEEEEE-------
Q 023214 8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGV-TS----------TCEMQRT------- 63 (285)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~------~~~~~-t~----------~~~~~~~------- 63 (285)
.++++. .+ ..|+++|++|+||||++..|++......+. ..... .. .......
T Consensus 91 ~~i~~~--~~--~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~ 166 (295)
T 1ls1_A 91 RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPE 166 (295)
T ss_dssp CCCCCC--SS--EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHH
T ss_pred ceeecC--CC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHH
Confidence 345555 44 799999999999999999988654321111 00000 00 0000000
Q ss_pred -------Ee--eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Q 023214 64 -------VL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK 134 (285)
Q Consensus 64 -------~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~ 134 (285)
.. ..+..+.|+||||.... +.....++....... .++.+++|+++... . ..+..++.. ..
T Consensus 167 ~l~~~~l~~~~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~---~~~~~~~~~-~~ 235 (295)
T 1ls1_A 167 SIRRRVEEKARLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--Q---EALSVARAF-DE 235 (295)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--H---HHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--H---HHHHHHHHH-hh
Confidence 00 02456999999987643 333445554444332 46778889997522 2 222333322 21
Q ss_pred cccCeEEEEEeCCCCCCC
Q 023214 135 KIFDYMIVVFTGGDELED 152 (285)
Q Consensus 135 ~~~~~~iil~nk~D~~~~ 152 (285)
. ....-+++||.|....
T Consensus 236 ~-~~i~givlnk~d~~~~ 252 (295)
T 1ls1_A 236 K-VGVTGLVLTKLDGDAR 252 (295)
T ss_dssp H-TCCCEEEEECGGGCSS
T ss_pred c-CCCCEEEEECCCCCcc
Confidence 1 1245688999997654
No 297
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.10 E-value=1e-05 Score=78.58 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=33.0
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g 41 (285)
+..+.+++++.+..| ..++|+||||+|||||+++|.+
T Consensus 659 ~~~V~ndvsl~~~~g--~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 659 DQYVPNNTDLSEDSE--RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SSSCCEEEEECTTSC--CEEEEESCCCHHHHHHHHHHHH
T ss_pred CceecccccccCCCC--eEEEEECCCCCchHHHHHHHHH
Confidence 456788999999988 7999999999999999999864
No 298
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.06 E-value=1.1e-06 Score=72.02 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=22.1
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHh-CCc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL-GRR 43 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~-g~~ 43 (285)
....++||.+..| ..|+|+|+||||||||++.|+ |..
T Consensus 15 ~~~~~~sl~v~~G--~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVG--VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECC--CEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCC--CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3456788999999 899999999999999999999 865
No 299
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.05 E-value=2.8e-05 Score=67.63 Aligned_cols=70 Identities=11% Similarity=0.090 Sum_probs=43.2
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC----------CCCCHHHHHHHHHHHHHhCcc--
Q 023214 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR----------SRFSQEEEAALHSLQTLFGKK-- 135 (285)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~----------~~~~~~~~~~l~~~~~~~~~~-- 135 (285)
...+.++||+|...+.. ....++++++++++|+|++ +.-+- .....++.......
T Consensus 182 ~v~l~iwDtaGQe~~r~-----------~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~--~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERR-----------KWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM--METKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTTGGG-----------GTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHH--HHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchhhhH-----------HHHHHhCCCCEEEEEEECcccccccccccchhHH--HHHHHHHHHHHhcccc
Confidence 35689999999865422 2235689999999999985 22111 22233333333211
Q ss_pred ccCeEEEEEeCCCCC
Q 023214 136 IFDYMIVVFTGGDEL 150 (285)
Q Consensus 136 ~~~~~iil~nk~D~~ 150 (285)
...|++++.||.|+.
T Consensus 249 ~~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIF 263 (354)
T ss_dssp SSCEEEEEEECHHHH
T ss_pred CCCeEEEEEECcchh
Confidence 124899999999964
No 300
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.04 E-value=1.7e-06 Score=72.18 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=31.3
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 45 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~ 45 (285)
++++.+++ +.+| ..++|+|+||||||||+++|+|...+
T Consensus 14 ~~vl~~i~--i~~g--~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 14 PDKVLELC--HRKM--GLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CTHHHHGG--GCSS--EEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--hCCC--CEEEEECCCCccHHHHHHHHHHhCCC
Confidence 34566666 6777 79999999999999999999987654
No 301
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.03 E-value=2.2e-06 Score=68.51 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=24.2
Q ss_pred ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
+....| ..|+|+|+||||||||++.|+|..
T Consensus 2 ~~m~~g--~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 2 NAMNKA--NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ---CCC--CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcCCCC--cEEEEECcCCCCHHHHHHHHHhhC
Confidence 344566 789999999999999999999864
No 302
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.01 E-value=2.9e-05 Score=68.58 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=48.5
Q ss_pred EEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC----------CCCHHHHHHHHHHHH
Q 023214 61 QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS----------RFSQEEEAALHSLQT 130 (285)
Q Consensus 61 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~----------~~~~~~~~~l~~~~~ 130 (285)
..+.+ .+..+.++||+|...+. .....++.+++++++|+|+++ .-+- .....++..
T Consensus 210 ~~~~~-~~v~l~iwDtaGQe~~r-----------~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~--~e~~~~~~~ 275 (402)
T 1azs_C 210 TKFQV-DKVNFHMFDVGGQRDER-----------RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL--QEALNLFKS 275 (402)
T ss_dssp EEEEE-TTEEEEEEEECCSGGGG-----------GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHH--HHHHHHHHH
T ss_pred EEeec-CCccceecccchhhhhh-----------hhhHhhccCCCEEEEEEECcccccccccccccchH--HHHHHHHHH
Confidence 34444 56789999999976432 123467899999999999974 2222 223333333
Q ss_pred HhCc--cccCeEEEEEeCCCCC
Q 023214 131 LFGK--KIFDYMIVVFTGGDEL 150 (285)
Q Consensus 131 ~~~~--~~~~~~iil~nk~D~~ 150 (285)
.... ....|++|+.||.|+.
T Consensus 276 i~~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 276 IWNNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp HHTCTTCSSCCEEEEEECHHHH
T ss_pred HHhcccCCCCeEEEEEEChhhh
Confidence 3321 1224899999999964
No 303
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.01 E-value=1.3e-06 Score=84.97 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=35.1
Q ss_pred CCCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
|+..+++++|+.+..| .+++|+|+||+|||||+++|+|.
T Consensus 446 g~~~iL~~vsl~I~~G--e~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRA--RRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCEEeEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999 89999999999999999999953
No 304
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.00 E-value=1.3e-06 Score=76.51 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=33.5
Q ss_pred cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 023214 8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (285)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~ 47 (285)
+++++.+..| ..++|+|+||+|||||+++|+|...+..
T Consensus 166 ~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~~~ 203 (361)
T 2gza_A 166 SFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPFDQ 203 (361)
T ss_dssp HHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCTTS
T ss_pred HHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCCCc
Confidence 6778888899 8999999999999999999999876543
No 305
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.99 E-value=8.3e-06 Score=72.60 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=29.2
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
.++++++.+.+| .++|+|+||+|||||+++|.+.
T Consensus 50 ~l~~v~l~~~~G---~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 50 TITQLELELGGG---FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp TEEEEEEECCSS---EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC---cEEEECCCCCCHHHHHHHHHHH
Confidence 467888888887 8899999999999999998543
No 306
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.98 E-value=3e-06 Score=68.85 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=24.8
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
..+.| ..++|+||||||||||++.|+|...
T Consensus 12 ~~~~G--~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQG--TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CC--CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCC--cEEEEECCCCCCHHHHHHHHhccCC
Confidence 44667 7999999999999999999998765
No 307
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.97 E-value=5.5e-06 Score=76.21 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=33.9
Q ss_pred ccCccccCC-CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 023214 7 DDDWELTSP-SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS 50 (285)
Q Consensus 7 ~~~~~~~~~-~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~ 50 (285)
|.-+.++.+ .| ..++|+|+||||||||+++|+|...+..|..
T Consensus 14 f~l~~l~~~~~G--ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 14 FKLFGLPTPKNN--TILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp CEEECCCCCCTT--EEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred eeecCCCCCCCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 455556655 56 7999999999999999999999987766543
No 308
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.97 E-value=7.7e-07 Score=76.94 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=33.7
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~ 47 (285)
+.+++++.+..| ..++|+|+||+|||||+++|+|...+..
T Consensus 160 ~l~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~~~~ 199 (330)
T 2pt7_A 160 AISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKEE 199 (330)
T ss_dssp HHHHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSCTTS
T ss_pred HHhhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence 345677888888 7999999999999999999999876543
No 309
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.96 E-value=1.7e-06 Score=69.72 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=28.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 023214 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS 50 (285)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~ 50 (285)
..| ..++|+|+||+|||||+++|+|. .+.+|..
T Consensus 20 ~~G--e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 20 DTN--TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHC--SEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred cCC--CEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 556 79999999999999999999998 6666544
No 310
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.96 E-value=7.4e-06 Score=66.44 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..+|+|+|++|+|||||++.++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3799999999999999999998653
No 311
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.95 E-value=3.2e-06 Score=66.35 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
+++|+|+||+|||||++.|+|...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998753
No 312
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.93 E-value=1.9e-06 Score=77.65 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=33.9
Q ss_pred cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++++.+..| .+++|+|+||+|||||+++|+|...+..|
T Consensus 129 ~~vsl~i~~G--e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 129 EKIRMSNFEG--PRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp HHHHHHSSSC--CCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred hcCceEeCCC--CEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 3578889999 89999999999999999999998765554
No 313
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.91 E-value=7.4e-06 Score=64.66 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=24.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 14 SPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
+..| ..|+|+|+|||||||+++.|++.
T Consensus 6 i~~g--~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGG--NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTT--EEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCC--eEEEEECCCCCCHHHHHHHHHhc
Confidence 5667 79999999999999999999986
No 314
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.89 E-value=3.9e-06 Score=75.74 Aligned_cols=42 Identities=17% Similarity=-0.005 Sum_probs=34.9
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
..++++++.++. ..++|+|+||+|||||+++|+|...+..|.
T Consensus 18 ~~l~~vsl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 18 NGFFARTFDFDE---LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp TTEEEEEEECCS---SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred ccccceEEEEcc---ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 356788888887 489999999999999999999987665553
No 315
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.89 E-value=2e-06 Score=74.75 Aligned_cols=40 Identities=20% Similarity=0.147 Sum_probs=34.3
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~ 46 (285)
..+.+++ +++..| .+++|+|+||+|||||+++|+|...+.
T Consensus 59 ~~ald~l-l~i~~G--q~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 59 VRAIDGL-LTCGIG--QRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CHHHHHH-SCEETT--CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEee-eeecCC--CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3456677 899999 899999999999999999999987543
No 316
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.89 E-value=4e-06 Score=66.94 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..++|+||||+|||||++.|+|..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999999854
No 317
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.88 E-value=9.3e-06 Score=75.66 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=31.1
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS 50 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~~~~ 50 (285)
.+..| ..++|+|+||+|||||+++|+|...+..|..
T Consensus 99 ~~~~G--ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 99 TPRPG--QVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCC--CEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 45667 7999999999999999999999988776654
No 318
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.87 E-value=6.5e-06 Score=76.70 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=35.9
Q ss_pred cccCccccCCCCCc---eEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 023214 6 IDDDWELTSPSNGE---RTVVLVGRTGNGKSATGNSILGRRAFKSRA 49 (285)
Q Consensus 6 ~~~~~~~~~~~~~~---~~i~lvG~~g~GKSTlln~l~g~~~~~~~~ 49 (285)
.+.++++.+..|.. ..++|+|+||+|||||+++|+|...+..|.
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 45677888777632 469999999999999999999998877654
No 319
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.85 E-value=6.8e-06 Score=66.05 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=23.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 14 SPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
...| ..|+|+|+||||||||++.|+|..
T Consensus 3 ~~~~--~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 3 APKP--FVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp --CC--EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCc--EEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455 799999999999999999999864
No 320
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.85 E-value=5.7e-05 Score=72.54 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=32.4
Q ss_pred CCCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
+..+++++++. ..| ..++|+||||+|||||+++|+|..
T Consensus 594 ~~~vlndisl~-~~g--~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 594 EPFIANPLNLS-PQR--RMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SCCCCEEEEEC-SSS--CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Cceeeeccccc-CCC--cEEEEECCCCCChHHHHHHHHHHH
Confidence 45677888888 667 799999999999999999998754
No 321
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.84 E-value=3.5e-06 Score=75.51 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=34.7
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~ 46 (285)
..+.+++ +++..| .+++|+|+||+|||||+++|+|...+.
T Consensus 145 ~~vld~v-l~i~~G--q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 145 VRAINAL-LTVGRG--QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CHHHHHH-SCCBTT--CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ceEEeee-EEecCC--CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 4467778 999999 899999999999999999999876543
No 322
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.83 E-value=6.8e-05 Score=65.30 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=26.2
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~ 46 (285)
...++ ..|+|+|+||||||||+++|+|...+.
T Consensus 119 ~~~~~--g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 119 SDVPR--GLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HHCSS--EEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred HhCCC--CEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 34455 599999999999999999999876543
No 323
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=1e-05 Score=64.54 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
....+++++.+..+ ..|+|+|++||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~--~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAM--VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CC--CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCC--CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44578899999888 899999999999999999998543
No 324
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.80 E-value=5.5e-06 Score=65.37 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
..++|+|+||||||||++.|+|...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999998764
No 325
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.80 E-value=1.1e-05 Score=64.49 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=24.8
Q ss_pred ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
|.+.+| ..|+|+|++||||||+++.|++..
T Consensus 1 m~i~~g--~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKG--LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCC--CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCC--CEEEEECCCCCCHHHHHHHHHHhh
Confidence 345667 799999999999999999999876
No 326
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.79 E-value=6.2e-05 Score=71.89 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=30.2
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
..+++++++. | ..++|+||||+|||||+++|+|...
T Consensus 566 ~~vl~disl~---g--~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 566 EFVPNDLEMA---H--ELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp CCCCEEEEES---S--CEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEeeeccCC---C--cEEEEECCCCCChHHHHHHHHhhhh
Confidence 4566777777 6 7999999999999999999988653
No 327
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.78 E-value=1e-05 Score=65.01 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=24.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 15 PSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
..| ..|+|+|+||||||||++.|+|...
T Consensus 20 ~~g--~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGR--QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSC--EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCC--eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455 8999999999999999999998764
No 328
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.78 E-value=6.5e-06 Score=72.15 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=31.8
Q ss_pred cCccccCCC--CCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 023214 8 DDWELTSPS--NGERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (285)
Q Consensus 8 ~~~~~~~~~--~~~~~i~lvG~~g~GKSTlln~l~g~~~~~~ 47 (285)
..+++.+.. + .+++|+|+||+|||||++.|+|...+..
T Consensus 159 ~~v~~~v~~~lg--~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 159 KFIPKEARPFFA--KTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GGSCTTTGGGTC--EEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhCCHHHHHhhh--CeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 446677777 7 8999999999999999999998765543
No 329
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.78 E-value=0.00011 Score=72.51 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=33.3
Q ss_pred CCCcccCccccCCC-------CCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214 3 GSAIDDDWELTSPS-------NGERTVVLVGRTGNGKSATGNSILGRRAF 45 (285)
Q Consensus 3 ~~~~~~~~~~~~~~-------~~~~~i~lvG~~g~GKSTlln~l~g~~~~ 45 (285)
+..+++++++.+.. | ..++|+||||+|||||+++| |...+
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g--~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKA--YCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CC--CEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred CceEeeeeeeccccccccCCCC--cEEEEECCCCCChHHHHHHH-HHHHH
Confidence 45678888888876 6 79999999999999999999 76543
No 330
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.74 E-value=1.3e-05 Score=62.84 Aligned_cols=24 Identities=29% Similarity=0.639 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..++|+|+||||||||++.|++..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999999754
No 331
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.71 E-value=2e-05 Score=64.76 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.9
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~ 40 (285)
-++.| ..++|+|+||||||||++.|+
T Consensus 26 gi~~G--~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEG--TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETT--CEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCC--cEEEEEeCCCCCHHHHHHHHH
Confidence 56778 799999999999999999998
No 332
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.71 E-value=1.9e-05 Score=67.56 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=26.3
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAF 45 (285)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~ 45 (285)
+..| ..|+|+|+||||||||++.|+|...+
T Consensus 87 ~~~g--~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVP--FIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCC--EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCC--EEEEEECCCCchHHHHHHHHHhhccc
Confidence 5666 89999999999999999999987654
No 333
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.70 E-value=1.5e-05 Score=75.40 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=28.7
Q ss_pred CCcccCccccCCCCCceEEEEEcCCCCCHHHHH
Q 023214 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATG 36 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTll 36 (285)
..+++++|++++.| ..++|+|+||||||||+
T Consensus 31 ~~~L~~vsl~i~~G--e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 31 AHNLKNIDVEIPRG--KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp STTCCSEEEEEETT--SEEEEECSTTSSHHHHH
T ss_pred ccceeccEEEECCC--CEEEEECCCCCCHHHHh
Confidence 45789999999999 89999999999999997
No 334
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.69 E-value=1.1e-05 Score=76.31 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=30.9
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~ 40 (285)
...+++++.++.| ..++|+|+||||||||+++|+
T Consensus 336 ~~L~~vsl~I~~G--e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEEEEETT--SEEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeEecCC--CEEEEEeeCCCCHHHHHHHHH
Confidence 4578999999999 899999999999999998765
No 335
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.69 E-value=1.9e-05 Score=62.80 Aligned_cols=31 Identities=32% Similarity=0.571 Sum_probs=24.6
Q ss_pred cccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
|++...| ..|+|+||+|+|||||++.|++..
T Consensus 13 ~~~~~~g--~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGR--KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSC--CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCC--CEEEEECcCCCCHHHHHHHHHhhC
Confidence 4555566 799999999999999999999754
No 336
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.67 E-value=1.6e-05 Score=63.03 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
.+++|+|+||+|||||++.|+|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 5799999999999999999998764
No 337
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.66 E-value=5.8e-06 Score=68.51 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=33.4
Q ss_pred CCCcccCccccCCC---CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 3 GSAIDDDWELTSPS---NGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
+..+++++++.+.. | ..|+|+|++|+||||+.+.|++..
T Consensus 31 ~~~~l~~~~~~i~~~l~g--~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNG--RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -CHHHHHHHHTTHHHHTT--CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCC--CEEEEECCCCCCHHHHHHHHHHhc
Confidence 45678889999998 8 799999999999999999997643
No 338
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.66 E-value=7.4e-06 Score=74.82 Aligned_cols=38 Identities=24% Similarity=0.160 Sum_probs=31.2
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~ 46 (285)
.+++++.+..| ..++|+|+||||||||+++|+|...+.
T Consensus 250 l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 250 LAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp HHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 34566677778 689999999999999999999877543
No 339
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.66 E-value=7e-06 Score=70.23 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=24.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 15 PSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
..| ..|+|+|+||||||||++.|+|...
T Consensus 78 ~~g--~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIP--YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCC--EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCC--EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455 8999999999999999999998543
No 340
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.65 E-value=3e-05 Score=60.70 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=27.4
Q ss_pred cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
+++++.+.+| ..+|+|+||+|||||+++|.+..
T Consensus 18 ~~~~~~~~~g---~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG---FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS---EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC---cEEEECCCCCCHHHHHHHHHHHH
Confidence 5667777776 78999999999999999987544
No 341
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.64 E-value=2.3e-05 Score=62.51 Aligned_cols=29 Identities=28% Similarity=0.576 Sum_probs=22.5
Q ss_pred ccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
+....| ..|+|+|++||||||+++.|++.
T Consensus 24 m~~~~g--~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 24 MTGEPT--RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ----CC--CEEEEECCTTSCHHHHHHHHHHH
T ss_pred hcCCCC--cEEEEECCCCCCHHHHHHHHHHh
Confidence 444556 79999999999999999999764
No 342
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.63 E-value=1.7e-05 Score=63.21 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=28.5
Q ss_pred cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
+..++....| ..|+|+|++|+||||+++.|++...
T Consensus 16 ~~~~~~~~~g--~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 16 DRQRLLDQKG--CVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHHHHHTSCC--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCC--eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445556677 8999999999999999999987653
No 343
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.62 E-value=1.9e-05 Score=66.93 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=34.2
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~ 46 (285)
+.++++++.+..| ..++|+|+||+|||||++.|++...+.
T Consensus 23 ~~Ld~i~~~l~~G--~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 23 TGINDKTLGARGG--EVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TTHHHHHCSBCTT--CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCC--eEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4567788889999 899999999999999999998766543
No 344
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.61 E-value=2.9e-05 Score=64.03 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh---CCccccc
Q 023214 20 RTVVLVGRTGNGKSATGNSIL---GRRAFKS 47 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~---g~~~~~~ 47 (285)
..|+|+|+|||||||+++.|+ |...+..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~ 58 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSS 58 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 699999999999999999999 8766543
No 345
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.60 E-value=1.3e-05 Score=65.14 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=25.9
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
-++.| ..++|+|+||+|||||++.|+|...
T Consensus 21 gi~~G--~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQ--AITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESS--EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCC--cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45677 8999999999999999999998543
No 346
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.56 E-value=2.4e-05 Score=61.21 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=25.2
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
.++.| ..++|+|++|+|||||+++|++...
T Consensus 34 ~~~~g--~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 34 NPEEG--KGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CGGGC--CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccCC--CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34456 7899999999999999999997664
No 347
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.56 E-value=4.2e-05 Score=61.41 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=24.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 15 PSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
++| ..|+|+|||||||||+++.|++...
T Consensus 6 ~~g--~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERG--LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCC--CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCC--cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345 7899999999999999999998753
No 348
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.54 E-value=3.2e-05 Score=67.88 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=26.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAF 45 (285)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~ 45 (285)
+.+| ..|+|+|+||||||||+++|+|...+
T Consensus 133 ~~~g--~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 133 HRKM--GLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp TSSS--EEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred hcCC--CEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 5666 79999999999999999999986643
No 349
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.54 E-value=2.2e-05 Score=72.10 Aligned_cols=40 Identities=23% Similarity=0.187 Sum_probs=34.0
Q ss_pred CCCcccCccc-cCCCCCceEEEEEcCCCCCHHHHHHH--HhCCcc
Q 023214 3 GSAIDDDWEL-TSPSNGERTVVLVGRTGNGKSATGNS--ILGRRA 44 (285)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~i~lvG~~g~GKSTlln~--l~g~~~ 44 (285)
+.+.++++++ .++.| ..++|+|+||||||||++. +.|...
T Consensus 24 g~~~Ld~i~~G~i~~G--e~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIG--RSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp CCTTHHHHTTSSEETT--SEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CchhHHHhcCCCCCCC--eEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4567888999 99999 8999999999999999999 455443
No 350
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.53 E-value=2.3e-05 Score=65.82 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=28.3
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.++.++++.++.| ++|+|+||+|||||+++|+|..
T Consensus 34 ~~l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 34 DQFKALGLVTPAG----VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp HHHHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHc
Confidence 3456667776655 9999999999999999999754
No 351
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.52 E-value=4.5e-05 Score=63.19 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh---CCccccc
Q 023214 20 RTVVLVGRTGNGKSATGNSIL---GRRAFKS 47 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~---g~~~~~~ 47 (285)
..|+|+|++||||||+++.|+ |...+.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 799999999999999999999 7665444
No 352
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.45 E-value=3.6e-05 Score=67.53 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=30.4
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
++.++++.++.| ..++|+|++|+|||||++.|++.
T Consensus 158 ~l~~~~~~i~~~--~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 158 FLKCMVYNIPKK--RYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHCCTTC--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcccccCCC--CEEEEECCCCCCHHHHHHHHHhh
Confidence 355677888988 79999999999999999999963
No 353
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.45 E-value=4.8e-05 Score=59.90 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..++|+|+|||||||+++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999985
No 354
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.44 E-value=6.4e-05 Score=61.31 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=25.9
Q ss_pred cccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
+....+| ..|+|+|++||||||+++.|.+.
T Consensus 14 ~~~~~~g--~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQP--FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCC--EEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCc--eEEEEECCCCCCHHHHHHHHHhc
Confidence 4455677 89999999999999999999875
No 355
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.43 E-value=7.8e-05 Score=57.87 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|+|++||||||+++.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 78999999999999999998753
No 356
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0011 Score=59.21 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.-|+|.||+|+|||+|.++|++..
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999999643
No 357
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.41 E-value=5.9e-05 Score=67.09 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=25.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 023214 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (285)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~~ 46 (285)
.++ ..|+|+|+||||||||+++|+|...+.
T Consensus 165 ~~g--gii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 165 RPH--GIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSS--EEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hcC--CeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 445 689999999999999999999876543
No 358
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.37 E-value=0.00011 Score=55.73 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=22.7
Q ss_pred CccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214 9 DWELTSPSNGERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~ 40 (285)
+..+.+.++ ..+|+|+||+||||++.+|.
T Consensus 16 ~~~i~f~~g---~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG---INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC---eEEEECCCCCCHHHHHHHHH
Confidence 344555544 67899999999999999976
No 359
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.36 E-value=7.4e-05 Score=65.38 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=25.5
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~ 40 (285)
+.+.++.++.| -.+|+|+|||||||++++|+
T Consensus 14 ~~~~~i~~~~g---~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 14 LKNVDIEFQSG---ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEecCCC---eEEEECCCCCCHHHHHHHHH
Confidence 34567777776 46799999999999999987
No 360
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.35 E-value=7.5e-05 Score=57.77 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..|+|+|++||||||+++.|++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998654
No 361
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.31 E-value=5.9e-05 Score=62.38 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=26.1
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
+.++++.++.| ++|+|++|+|||||+++|++..
T Consensus 41 ~~~~~~~~~~g----~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 41 FHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHTTCCCCSE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe----EEEECCCCCCHHHHHHHHHHHh
Confidence 44555555544 8999999999999999999754
No 362
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.29 E-value=0.00016 Score=56.67 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=24.7
Q ss_pred ccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 10 WELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
.++....+ .+|+|+|++||||||+.+.|...
T Consensus 3 ~~~~~~~~--~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKG--INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSS--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCC--CEEEEECCCCCCHHHHHHHHHHh
Confidence 46666777 79999999999999999999754
No 363
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.28 E-value=0.00019 Score=57.27 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=24.9
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.+..+ ..|+|+|++|+||||+++.|.+..
T Consensus 17 ~~~~~--~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKT--FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCC--EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCC--eEEEEECCCCCCHHHHHHHHHHhc
Confidence 44555 799999999999999999999864
No 364
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.0021 Score=56.57 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.-|+|.||+|+|||+|.+++++..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999654
No 365
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.26 E-value=0.00012 Score=63.78 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=28.3
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g 41 (285)
.+.++++.+..| ..+|+|+||+||||++++|.+
T Consensus 16 ~~~~~~~~~~~g---~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG---VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE---EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC---eEEEECCCCCChhHHHHHHHH
Confidence 356778888776 889999999999999999885
No 366
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0013 Score=58.18 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.-|+|.||+|+|||+|.++|++..
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHHh
Confidence 679999999999999999999654
No 367
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.25 E-value=8.5e-05 Score=60.16 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=27.8
Q ss_pred ccCccc-cCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 7 DDDWEL-TSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 7 ~~~~~~-~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
++++.. -++.| ..++|+|+||+|||||++.|++..
T Consensus 12 Ld~~~~ggi~~G--~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 12 FDKLIQGGIPQG--FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp HHGGGTTSEETT--CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcCCCcCC--CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 444443 56777 789999999999999999998554
No 368
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.25 E-value=7.9e-05 Score=62.55 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=26.1
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
+.++++.++.| ++|+|++|+|||||+++|++..
T Consensus 65 l~~~~~~~~~g----vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 65 FHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHTTCCCCCE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe----EEEECCCcChHHHHHHHHHHHc
Confidence 44555665544 8999999999999999999754
No 369
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.0026 Score=56.60 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.-|+|.||+|+|||+|+++|++..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999643
No 370
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.22 E-value=0.00019 Score=57.18 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 371
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.20 E-value=6.7e-05 Score=58.34 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRAF 45 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~~ 45 (285)
..++|+|++|+|||||++.|++...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47999999999999999999987543
No 372
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.19 E-value=0.00019 Score=61.44 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.+..|+|+|++|||||||++.|.+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999997654
No 373
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.19 E-value=0.00013 Score=55.34 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
..++|+|++|+|||||+++|++...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999997654
No 374
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.19 E-value=0.00017 Score=61.79 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.+.++|+|++|||||||+|.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3688999999999999999999764
No 375
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.19 E-value=0.00019 Score=57.14 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..|+|+|++|+|||||++.|.+..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998654
No 376
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.16 E-value=0.00018 Score=58.24 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.+|+|+|++||||||+++.|.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998643
No 377
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.16 E-value=0.00017 Score=57.42 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
.+|+|+|++||||||+++.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 378
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.10 E-value=0.00013 Score=70.90 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=30.5
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~ 40 (285)
.++++++.++.| ..++|+|+||+|||||++.|+
T Consensus 657 ~Lk~Vsl~I~~G--eivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 657 NLRGIDVSFPLG--VLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TCCSEEEEEESS--SEEEEECSTTSSHHHHHTTTH
T ss_pred cccCceEEECCC--CEEEEEcCCCCCHHHHHHHHH
Confidence 578899999999 899999999999999999864
No 379
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.10 E-value=0.00026 Score=56.47 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..|+|+|++||||||+++.|+...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 789999999999999999998543
No 380
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.10 E-value=2.5e-05 Score=63.63 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRRAFKSR 48 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~~~~~~ 48 (285)
.++|+||||+|||||+++|+|...+.++
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 6789999999999999999987765543
No 381
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.06 E-value=0.00034 Score=55.89 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=22.6
Q ss_pred CccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214 9 DWELTSPSNGERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~ 40 (285)
+..+.+.++ ..+|+|+||+||||++.+|.
T Consensus 16 ~~~i~f~~~---~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG---INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC---eEEEEcCCCCCHHHHHHHHH
Confidence 344555544 77899999999999999875
No 382
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.05 E-value=0.002 Score=50.97 Aligned_cols=82 Identities=7% Similarity=-0.010 Sum_probs=46.0
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccCeEEEEEeCC
Q 023214 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (285)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iil~nk~ 147 (285)
...++|+|||+..+ .. .... +..+|.+++++.++ ..+..-...++.+...-......++.+|+|+.
T Consensus 75 ~yD~viiD~~~~~~-----~~----~~~~----l~~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-----VI----TSAA----VMVSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSS-----HH----HHHH----HHHCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCC-----HH----HHHH----HHHCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 45799999998652 11 1112 22358889898886 44433445555555432111122668999999
Q ss_pred CCCCCChhcHHHHhhh
Q 023214 148 DELEDNDETLEDYLGR 163 (285)
Q Consensus 148 D~~~~~~~~l~~~l~~ 163 (285)
|........+.++++.
T Consensus 141 ~~~~~~~~~~~~~l~~ 156 (206)
T 4dzz_A 141 IEMATMLNVLKESIKD 156 (206)
T ss_dssp CTTEEEEHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHH
Confidence 8543322344555543
No 383
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0016 Score=57.97 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.-|+|.||+|+|||+|.++|++..
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHHh
Confidence 689999999999999999999654
No 384
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.03 E-value=0.00035 Score=59.97 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=25.7
Q ss_pred cCccccCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214 8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g 41 (285)
++.++.+.+| ..+|+|+||+|||||+++|..
T Consensus 16 ~~~~l~~~~g---~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 16 RPSLIGFSDR---VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SCEEEECCSS---EEEEECCTTTCSTHHHHHHHH
T ss_pred CCeEEecCCC---cEEEECCCCCcHHHHHHHHHH
Confidence 4556777666 789999999999999999873
No 385
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0033 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.-|+|.||+|+|||+|.++|++..
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhcc
Confidence 689999999999999999999654
No 386
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.99 E-value=0.00014 Score=70.50 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=30.5
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~ 40 (285)
.++++++.++.| ..++|+|+||+|||||++.|+
T Consensus 639 ~Lk~Vsl~I~~G--eiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEESS--SEEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcCC--CEEEEEcCCCCCHHHHHHHHH
Confidence 578899999999 899999999999999999864
No 387
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.95 E-value=0.00041 Score=54.60 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
-|+|+||+|+|||||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999998543
No 388
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.0058 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..++|+|++|+||||+++.|++.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999874
No 389
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.93 E-value=0.00044 Score=55.42 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=24.5
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g 41 (285)
-++.| ..++|+|++|+|||||+..|++
T Consensus 16 gi~~G--~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPG--VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTT--SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence 46777 7999999999999999999987
No 390
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.92 E-value=0.00043 Score=53.87 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..++|+|++|+|||||++.|++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 689999999999999999998653
No 391
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.91 E-value=0.0002 Score=58.37 Aligned_cols=28 Identities=11% Similarity=0.149 Sum_probs=24.6
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
-++.| ..++|+|+||+|||||+..|++.
T Consensus 20 gi~~G--~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETG--SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETT--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCC--eEEEEECCCCCcHHHHHHHHHHH
Confidence 35677 79999999999999999999974
No 392
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.87 E-value=0.00011 Score=70.70 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=30.3
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHH-HhC
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNS-ILG 41 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~-l~g 41 (285)
.++++++.++.| ..++|+|+||+|||||++. |+|
T Consensus 512 ~L~~vsl~i~~G--eiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 512 NLDNLDVRFPLG--VMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp TEEEEEEEEESS--SEEEEECCTTSSHHHHCCCCCHH
T ss_pred ccccceEEEcCC--CEEEEEcCCCcCHHHHHHHHHHH
Confidence 467899999999 8999999999999999996 553
No 393
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.86 E-value=0.00051 Score=54.52 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|+|++||||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998754
No 394
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.86 E-value=0.00058 Score=57.71 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
....|+|+|++|||||||++.|.+...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 347999999999999999999987654
No 395
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.85 E-value=0.055 Score=52.52 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..++|+|++|+||||+++.|+...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998654
No 396
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.85 E-value=0.00047 Score=59.62 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=21.5
Q ss_pred cccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214 11 ELTSPSNGERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~ 40 (285)
.+.+.+| ..+|+|+||+||||++.+|+
T Consensus 18 ~i~f~~~---~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 18 VVEFKEG---INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred EEcCCCC---eEEEECCCCCCHHHHHHHHH
Confidence 4445444 66899999999999999875
No 397
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.84 E-value=0.00023 Score=61.85 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=27.6
Q ss_pred cccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.+.++.| ..++|+|+||+|||||++.|++..
T Consensus 125 ~ggi~~G--~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQ--AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESS--EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCC--eEEEEECCCCCCHHHHHHHHHHHh
Confidence 4667888 899999999999999999999765
No 398
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.83 E-value=0.00065 Score=52.16 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|+|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999743
No 399
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.82 E-value=0.00066 Score=52.12 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 023214 20 RTVVLVGRTGNGKSATGNSI 39 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l 39 (285)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 400
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.82 E-value=0.00052 Score=66.68 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=28.0
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHH
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGN 37 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln 37 (285)
..++++++.++.| ..++|+|+||+|||||++
T Consensus 598 ~~Lk~Vsl~I~~G--eiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 598 NNLKNIDVEIPLG--VFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp TTCCSEEEEEESS--SEEEEECSTTSSHHHHHH
T ss_pred ccccccceEEcCC--cEEEEEccCCCChhhhHH
Confidence 3578899999999 899999999999999973
No 401
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.81 E-value=0.00064 Score=52.83 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..|+|+|.+||||||+++.|.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998643
No 402
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.80 E-value=0.00088 Score=57.79 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=25.5
Q ss_pred cccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
+..+..|....+++.|++|+||||+++.+++...
T Consensus 38 ~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 38 RKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 3334455334489999999999999999987653
No 403
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.79 E-value=0.00056 Score=57.31 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=24.2
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
-++.| ..++|+|+||+|||||+..|++.
T Consensus 26 gl~~G--~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAG--TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETT--SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCC--CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35667 79999999999999999999863
No 404
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.77 E-value=0.00075 Score=52.64 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++||||||+.+.|+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999973
No 405
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.74 E-value=0.0009 Score=51.74 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999985
No 406
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.73 E-value=0.0011 Score=53.98 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 16 SNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.| ..|+|.|++||||||+++.|....
T Consensus 25 ~g--~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MS--AFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CC--EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CC--eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56 899999999999999999998654
No 407
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.73 E-value=0.00072 Score=60.41 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=25.3
Q ss_pred ccCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 45 (285)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~ 45 (285)
+.+..+ ..++|+|+||+|||||+++|.+...+
T Consensus 21 ~~~~~~--~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGES--NFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTC--SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCC--CEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 344444 68899999999999999999875543
No 408
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.72 E-value=0.0006 Score=58.78 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..++|+||||+|||||+++|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999999765
No 409
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.70 E-value=0.0011 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++||||||+.+.|..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 410
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.70 E-value=0.012 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..++|.|++|+||||+++.++..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998754
No 411
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.70 E-value=0.0012 Score=51.49 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 14 SPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
...+ ..|+|+|.+|+||||+++.|+...
T Consensus 10 ~~~~--~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKG--IVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCC--EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCC--cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445 799999999999999999998654
No 412
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.65 E-value=0.0011 Score=52.45 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 023214 21 TVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~ 42 (285)
.|+|+|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999854
No 413
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.64 E-value=0.00086 Score=60.93 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=27.7
Q ss_pred CcccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..+.++++.++.| |+|+|++|+|||||+++|++..
T Consensus 54 ~~~~~lg~~ip~G----vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 54 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp GGTTTTSCCCCSE----EEEECSSSSSHHHHHHHHHHHT
T ss_pred hhhhhccCCCCce----EEEECCCCCCHHHHHHHHHHHh
Confidence 3456666666554 8999999999999999999754
No 414
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.63 E-value=0.0012 Score=51.15 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..|+|+|++||||||+.+.|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998543
No 415
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.62 E-value=0.013 Score=47.99 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|.|++|+|||++++.|+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999853
No 416
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.61 E-value=0.0012 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++||||||+.+.|+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
No 417
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.60 E-value=0.0013 Score=51.00 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 023214 20 RTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~ 40 (285)
..|+|+|++|+||||+.+.|.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 689999999999999999997
No 418
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.60 E-value=0.00055 Score=62.97 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=26.2
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 45 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~~ 45 (285)
.+..| ..|+|+|+||||||||+++|++...+
T Consensus 365 ~~~~G--~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 365 RERQG--FTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GGGSC--EEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccc--eEEEEECCCCChHHHHHHHHHHhhcc
Confidence 34567 89999999999999999999987643
No 419
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.59 E-value=0.0013 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999874
No 420
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.59 E-value=0.00074 Score=58.36 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=29.7
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
...+++.+..|...+|+|+|++|+||||+.+.|++..
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3445566777766779999999999999999988654
No 421
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.58 E-value=0.0015 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
...|+|+|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 378999999999999999999854
No 422
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.55 E-value=0.0017 Score=50.88 Aligned_cols=22 Identities=14% Similarity=0.421 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999874
No 423
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.52 E-value=0.0012 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
.+|+|+|++||||||+.+.|+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999743
No 424
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.52 E-value=0.0016 Score=52.10 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=24.5
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
....| ..|+|+|++|+||||+++.|.+..
T Consensus 21 ~~~~~--~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 21 RNQRG--LTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HTSSC--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCC--CEEEEECCCCCCHHHHHHHHHHHh
Confidence 44556 789999999999999999998654
No 425
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.51 E-value=0.0019 Score=51.97 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..++|.|++|+|||||++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999987543
No 426
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.50 E-value=0.0015 Score=50.96 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|+|++||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 427
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.49 E-value=0.0067 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..++|+|++|+|||++++.|+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999988654
No 428
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.47 E-value=0.0016 Score=52.18 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 023214 21 TVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g 41 (285)
+|+|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
No 429
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.47 E-value=0.0016 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|+|++|||||||.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 36899999999999999998754
No 430
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.46 E-value=0.0019 Score=51.01 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..|+|+|+.||||||+.+.|....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998543
No 431
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.45 E-value=0.0024 Score=50.52 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g 41 (285)
...|+|+|++||||||+.+.|+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999874
No 432
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.43 E-value=0.0014 Score=54.03 Aligned_cols=24 Identities=33% Similarity=0.643 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..++|+|++|+||||++++|++..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 469999999999999999998643
No 433
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.43 E-value=0.0019 Score=49.82 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..++++|++|+|||||++.|+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998864
No 434
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.42 E-value=0.0018 Score=51.92 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 023214 21 TVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g 41 (285)
+|+|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 435
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.42 E-value=0.0013 Score=57.52 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=23.6
Q ss_pred cCccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214 8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~ 40 (285)
.+..+.+.+| -.+|+|+||+||||++.+|.
T Consensus 17 ~~~~i~f~~g---l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEKG---IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCSE---EEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCCC---eEEEECCCCCCHHHHHHHHH
Confidence 3445566555 77899999999999999875
No 436
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.42 E-value=0.002 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|+|.+||||||+.+.|...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999743
No 437
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.42 E-value=0.012 Score=49.14 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..++|.|++|+||||+++.|++.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999999999854
No 438
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.41 E-value=0.002 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998863
No 439
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.40 E-value=0.002 Score=51.75 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++||||||+.+.|+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999874
No 440
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.40 E-value=0.0025 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 441
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.39 E-value=0.015 Score=49.08 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=18.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 023214 19 ERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~ 40 (285)
...|++.|+.|+||||+.-.|+
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA 62 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLS 62 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHH
Confidence 3789999999999999975543
No 442
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.39 E-value=0.0021 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++||||||+++.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999975
No 443
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.39 E-value=0.012 Score=56.36 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.-|+|.||+|+|||+|+++|++..
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999999999764
No 444
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.38 E-value=0.0022 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|.|++||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 445
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.36 E-value=0.0022 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999874
No 446
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.35 E-value=0.0023 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++||||||+.+.|+.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999974
No 447
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.35 E-value=0.0026 Score=50.60 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|+|.+||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 78999999999999999999743
No 448
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.31 E-value=0.0026 Score=51.80 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
.+|+|+|++|+||||+.+.|++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999999985
No 449
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.31 E-value=0.017 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.++|.|++|+|||||++.+++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998654
No 450
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.31 E-value=0.017 Score=47.87 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
...+.|.|++|+|||++++.|+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 368999999999999999999853
No 451
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.30 E-value=0.0023 Score=52.08 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++|+||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999984
No 452
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.30 E-value=0.0018 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|+|++||||||+.+.|...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999999754
No 453
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.26 E-value=0.0021 Score=56.13 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=28.1
Q ss_pred CccccCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 9 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
|+.+++.+| .+++|+|++|+|||||++.|++.
T Consensus 166 D~~~pi~rG--Qr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRG--QRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTT--CEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCC--cEEEEecCCCCChhHHHHHHHHH
Confidence 566788888 89999999999999999988754
No 454
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.26 E-value=0.0018 Score=52.67 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=22.8
Q ss_pred cccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214 11 ELTSPSNGERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~ 40 (285)
..-++.| ..++|+|+||+|||||+..++
T Consensus 17 ~gGl~~G--~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 17 HGGIPER--NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTSEETT--CEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCC--cEEEEECCCCCCHHHHHHHHH
Confidence 3446677 789999999999999977665
No 455
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.26 E-value=0.0025 Score=50.08 Aligned_cols=23 Identities=17% Similarity=0.590 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|+|++||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998743
No 456
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.24 E-value=0.0029 Score=51.88 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
.+|+|+|++||||||+.+.|+.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999999973
No 457
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.23 E-value=0.0026 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++||||||+.+.|+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
No 458
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.23 E-value=0.0027 Score=48.46 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 023214 21 TVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g 41 (285)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 459
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.21 E-value=0.0011 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.|+|+|++||||||+++.|....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998543
No 460
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.19 E-value=0.0024 Score=49.66 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
.+|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 461
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.18 E-value=0.0026 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|+|++||||||+.+.|+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998743
No 462
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.16 E-value=0.0031 Score=49.26 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 023214 21 TVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g 41 (285)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 463
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.15 E-value=0.0028 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 023214 21 TVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~ 42 (285)
.|+|.|+.||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 464
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.15 E-value=0.0029 Score=50.59 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 023214 21 TVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g 41 (285)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 465
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.14 E-value=0.002 Score=59.11 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=27.2
Q ss_pred cccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
+..+.+| ..++|+|+||+|||||++.|+|...
T Consensus 275 ~g~i~~G--~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 275 GGGFFKD--SIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp TSSEESS--CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3456777 7999999999999999999998654
No 466
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.14 E-value=0.0034 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g 41 (285)
...|+|.|++||||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999865
No 467
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.13 E-value=0.0028 Score=48.67 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 468
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.11 E-value=0.022 Score=45.30 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=41.8
Q ss_pred CceEEEEeCCCC-CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccCeEEEEEe
Q 023214 68 GQVVNVIDTPGL-FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFT 145 (285)
Q Consensus 68 ~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~iil~n 145 (285)
...+.|+|||+. .+. . .... +..+|.+++++.++ ..+-.. ...++.+... . . .++.+|+|
T Consensus 67 ~yD~viiD~p~~~~~~----~-----~~~~----l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~-~-~--~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE----D-----LEAL----ADGCDLLVIPSTPD-ALALDALMLTIETLQKL-G-N--NRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS----H-----HHHH----HHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT-C-S--SSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH----H-----HHHH----HHHCCEEEEEecCC-chhHHHHHHHHHHHHhc-c-C--CCEEEEEE
Confidence 456899999986 431 1 1111 33568888887765 222222 2333344332 1 1 26889999
Q ss_pred CCCCCC-CChhcHHHHhh
Q 023214 146 GGDELE-DNDETLEDYLG 162 (285)
Q Consensus 146 k~D~~~-~~~~~l~~~l~ 162 (285)
+.+... .....+.++++
T Consensus 129 ~~~~~~~~~~~~~~~~l~ 146 (209)
T 3cwq_A 129 IIPPYPSKDGDEARQLLT 146 (209)
T ss_dssp SBCCTTSCHHHHHHHHHH
T ss_pred ecCCccchHHHHHHHHHH
Confidence 998654 32234444454
No 469
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.08 E-value=0.0038 Score=49.28 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g 41 (285)
...|+|+|..||||||+.+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999999874
No 470
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.08 E-value=0.0012 Score=60.39 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=26.0
Q ss_pred ccCccccCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~ 40 (285)
++++++.+.+| ..+|+|+||+|||||+.+|.
T Consensus 51 ~~~~~l~f~~g---~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 51 ITQLELELGGG---FCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp BSCEEEECCCS---EEEEEESHHHHHHHHTHHHH
T ss_pred eeeEEEecCCC---eEEEEcCCCCCHHHHHHHHH
Confidence 45667777776 67899999999999999984
No 471
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.08 E-value=0.0045 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 023214 18 GERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~ 40 (285)
....|+|+|++||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999997
No 472
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.07 E-value=0.00096 Score=62.28 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=30.5
Q ss_pred cccCccccCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
+...+++.+..| ..++|+|++|+|||||+++|++...
T Consensus 49 ~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 49 AVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred hHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 344556667777 7999999999999999999998764
No 473
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.03 E-value=0.0028 Score=49.13 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999874
No 474
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.01 E-value=0.05 Score=46.39 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..|+|.|++|+|||+|++.++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 689999999999999999998543
No 475
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.01 E-value=0.0039 Score=50.30 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 023214 21 TVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g 41 (285)
.|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 476
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.00 E-value=0.0041 Score=47.54 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 023214 19 ERTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 19 ~~~i~lvG~~g~GKSTlln~l~g 41 (285)
...|+|+|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 477
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.96 E-value=0.0046 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999874
No 478
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.93 E-value=0.076 Score=45.03 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 023214 21 TVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~ 42 (285)
-+.+.|++|+||||+++.|+..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHH
Confidence 4555666999999999999743
No 479
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.89 E-value=0.0053 Score=47.43 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..++|.|++|+||||+++.++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999988543
No 480
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.89 E-value=0.0055 Score=53.15 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..++|.|++|+||||+++.++...
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999987543
No 481
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.88 E-value=0.0051 Score=48.55 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..+.|.|++|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998544
No 482
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.87 E-value=0.0049 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 023214 21 TVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 21 ~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
+|+|+|++||||+|....|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998543
No 483
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.87 E-value=0.0053 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..|+|.|++|+|||||+++|++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh
Confidence 689999999999999999998643
No 484
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.86 E-value=0.017 Score=50.12 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..++|.|++|+||||+++.++...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998544
No 485
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.85 E-value=0.0089 Score=53.06 Aligned_cols=25 Identities=36% Similarity=0.324 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 023214 18 GERTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
....|+|+|++||||||+.+.|+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999753
No 486
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.84 E-value=0.0048 Score=49.47 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 023214 20 RTVVLVGRTGNGKSATGNSILG 41 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g 41 (285)
..|+|+|++||||||+.+.|+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 487
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.83 E-value=0.0052 Score=48.60 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|.|++||||||+.+.|...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999998753
No 488
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.81 E-value=0.0034 Score=57.79 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
..++|+|++|+|||||+++|++...
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999987653
No 489
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.77 E-value=0.0032 Score=56.88 Aligned_cols=24 Identities=29% Similarity=0.637 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.-|+|+|++|+|||||+++|++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999754
No 490
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.77 E-value=0.0044 Score=54.70 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHh
Q 023214 14 SPSNGERTVVLVGRTGNGKSATGNSIL 40 (285)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlln~l~ 40 (285)
++.| ..++|+|++|+|||||+..|+
T Consensus 175 I~~G--ei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETG--SITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETT--SEEEEEESTTSSHHHHHHHHH
T ss_pred cCCC--cEEEEEcCCCCChHHHHHHHH
Confidence 4566 799999999999999999654
No 491
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.74 E-value=0.0063 Score=49.34 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|+|++||||||+.+.|+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998743
No 492
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.73 E-value=0.0068 Score=48.86 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..++|.|++|+|||||++.++...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998543
No 493
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.72 E-value=0.0071 Score=48.65 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..|.|+|++||||+|....|+...
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999999988543
No 494
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.71 E-value=0.0054 Score=53.94 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..++++|++|+|||||++.|+...
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 688999999999999999998654
No 495
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.70 E-value=0.0053 Score=59.22 Aligned_cols=29 Identities=21% Similarity=0.404 Sum_probs=24.7
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
.+..+ ..|+|+|++|+|||||+++|++..
T Consensus 234 ~i~~~--~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 234 GVKPP--RGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCC--CEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCC--CeEEEECcCCCCHHHHHHHHHHHc
Confidence 34555 789999999999999999998764
No 496
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.049 Score=46.36 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..+.|.|++|+|||++++.++...
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998655
No 497
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.63 E-value=0.033 Score=47.07 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=42.3
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHH-HHHHHHHHHHhCccccCeEEEEEeC
Q 023214 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEE-EAALHSLQTLFGKKIFDYMIVVFTG 146 (285)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~-~~~l~~~~~~~~~~~~~~~iil~nk 146 (285)
..+.++|| ...+.. ....++.++|++++|+|++++. +... ..++..+.. . . .|+++|+||
T Consensus 63 ~~~~iwD~--qer~~~-----------l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~--~-~--~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHRKNL-----------LTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--N-E--LETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCCSCE-----------ETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--T-T--CEEEEEECC
T ss_pred CeEEEEEE--ccccce-----------eeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--C-C--CCEEEEEeH
Confidence 47899998 332211 1114578899999999997664 4443 234444333 1 2 289999999
Q ss_pred CCCCCC
Q 023214 147 GDELED 152 (285)
Q Consensus 147 ~D~~~~ 152 (285)
+|+...
T Consensus 125 ~DL~~~ 130 (301)
T 1u0l_A 125 MDLYDE 130 (301)
T ss_dssp GGGCCH
T ss_pred HHcCCc
Confidence 998654
No 498
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.62 E-value=0.0093 Score=51.15 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~~ 44 (285)
..|+|+|++|+|||||...|+....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 5799999999999999999997653
No 499
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.62 E-value=0.0072 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 023214 20 RTVVLVGRTGNGKSATGNSILGRR 43 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~~ 43 (285)
..|+|+|++|+|||||...|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999988543
No 500
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.60 E-value=0.0071 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 023214 20 RTVVLVGRTGNGKSATGNSILGR 42 (285)
Q Consensus 20 ~~i~lvG~~g~GKSTlln~l~g~ 42 (285)
..|+|+|++|||||||...|+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 57999999999999999988754
Done!