Query 023215
Match_columns 285
No_of_seqs 190 out of 783
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 02:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 3.9E-13 8.5E-18 95.9 4.7 53 185-237 5-59 (60)
2 smart00353 HLH helix loop heli 99.3 2.5E-12 5.4E-17 90.4 6.1 50 189-238 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.3 3.9E-12 8.5E-17 90.8 5.4 48 187-234 4-55 (55)
4 KOG1318 Helix loop helix trans 99.3 3.4E-12 7.3E-17 125.0 5.6 65 175-239 224-291 (411)
5 KOG1319 bHLHZip transcription 98.9 4.5E-10 9.8E-15 101.2 2.5 61 185-245 63-129 (229)
6 KOG2588 Predicted DNA-binding 98.3 5.4E-07 1.2E-11 95.8 3.5 67 182-248 274-340 (953)
7 KOG3561 Aryl-hydrocarbon recep 98.2 1.2E-06 2.7E-11 92.3 5.1 52 185-236 21-75 (803)
8 KOG4304 Transcriptional repres 98.2 6E-07 1.3E-11 83.4 2.4 55 187-241 35-96 (250)
9 KOG2483 Upstream transcription 97.9 2.2E-05 4.9E-10 72.6 7.1 59 184-242 59-119 (232)
10 KOG3960 Myogenic helix-loop-he 97.6 0.00014 3.1E-09 68.4 6.9 58 188-245 122-180 (284)
11 KOG4029 Transcription factor H 97.3 0.00024 5.1E-09 64.3 4.2 58 187-244 112-172 (228)
12 PLN03217 transcription factor 97.0 0.0013 2.7E-08 53.3 5.3 53 193-245 16-73 (93)
13 KOG0561 bHLH transcription fac 96.9 0.00046 9.9E-09 66.6 2.0 53 189-241 65-118 (373)
14 KOG3910 Helix loop helix trans 95.2 0.025 5.4E-07 58.0 4.8 55 187-241 529-586 (632)
15 KOG4447 Transcription factor T 91.5 0.095 2.1E-06 46.7 1.5 48 187-235 81-130 (173)
16 KOG3558 Hypoxia-inducible fact 86.5 0.38 8.3E-06 51.1 1.9 42 191-232 53-97 (768)
17 KOG3559 Transcriptional regula 76.0 2.8 6.1E-05 42.8 3.6 43 191-233 8-53 (598)
18 KOG3560 Aryl-hydrocarbon recep 74.0 3 6.6E-05 43.8 3.3 40 192-232 33-76 (712)
19 KOG3898 Transcription factor N 61.0 5.6 0.00012 37.3 2.0 47 189-235 77-125 (254)
20 TIGR00986 3a0801s05tom22 mitoc 40.1 18 0.00039 31.9 1.7 36 196-232 48-83 (145)
21 KOG4395 Transcription factor A 38.7 47 0.001 32.2 4.3 49 189-237 179-229 (285)
22 PRK13702 replication protein; 32.9 96 0.0021 25.3 4.6 32 184-215 20-53 (85)
23 PHA00370 III attachment protei 31.6 1.1E+02 0.0024 29.7 5.6 27 92-118 224-252 (297)
24 KOG3582 Mlx interactors and re 30.4 14 0.00031 40.0 -0.5 57 187-243 654-714 (856)
25 PF04281 Tom22: Mitochondrial 29.7 35 0.00076 29.7 1.8 21 195-215 49-69 (137)
26 COG3074 Uncharacterized protei 29.0 46 0.001 26.5 2.2 25 223-247 13-37 (79)
27 KOG0105 Alternative splicing f 28.2 54 0.0012 30.8 2.8 15 20-34 100-114 (241)
28 KOG4447 Transcription factor T 27.7 46 0.00099 30.1 2.2 44 191-234 29-73 (173)
29 KOG3915 Transcription regulato 24.7 69 0.0015 33.6 3.2 22 217-238 506-527 (641)
30 PHA00370 III attachment protei 23.3 74 0.0016 30.9 2.9 14 147-160 233-246 (297)
31 PF14689 SPOB_a: Sensor_kinase 22.7 1.4E+02 0.0031 21.9 3.8 42 192-241 16-57 (62)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.39 E-value=3.9e-13 Score=95.85 Aligned_cols=53 Identities=36% Similarity=0.661 Sum_probs=48.8
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 023215 185 THPRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQI 237 (285)
Q Consensus 185 ~~~HsiaERrRRerIneri~~Lq~LVP~~--~K~~DKAsIL~eAI~YIK~LQ~QV 237 (285)
+..|+..||+||++||+.|..|+.+||.. ..++||++||..||+||++|+.++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999999 245999999999999999999986
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.33 E-value=2.5e-12 Score=90.36 Aligned_cols=50 Identities=34% Similarity=0.664 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 023215 189 SIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIE 238 (285)
Q Consensus 189 siaERrRRerIneri~~Lq~LVP~~--~K~~DKAsIL~eAI~YIK~LQ~QVq 238 (285)
+..||+||++||+.|..|+.+||.+ ..+++|++||.+||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999963 2348999999999999999999886
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.30 E-value=3.9e-12 Score=90.85 Aligned_cols=48 Identities=35% Similarity=0.639 Sum_probs=44.6
Q ss_pred CccHHHHHHHHHHHHHHHHHhccCCCC----CCCCChhhHHHHHHHHHHHHH
Q 023215 187 PRSIAERVRRTRISDRIRKLQDLVPNM----DKQTNTADMLEEAVEYVKFLQ 234 (285)
Q Consensus 187 ~HsiaERrRRerIneri~~Lq~LVP~~----~K~~DKAsIL~eAI~YIK~LQ 234 (285)
.|+..||+||++||+.|..|+.+||.+ ..+++|++||..||+||++||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 589999999999999999999999987 235899999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.28 E-value=3.4e-12 Score=125.04 Aligned_cols=65 Identities=25% Similarity=0.478 Sum_probs=57.9
Q ss_pred ccccccccCCCCCccHHHHHHHHHHHHHHHHHhccCCCCCC---CCChhhHHHHHHHHHHHHHHHHHH
Q 023215 175 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIEI 239 (285)
Q Consensus 175 ~~~raKrg~a~~~HsiaERrRRerIneri~~Lq~LVP~~~K---~~DKAsIL~eAI~YIK~LQ~QVq~ 239 (285)
.....|.+++++.|+++|||||++||++|++|..|||.|.. +++|..||..+++||+.||+..+.
T Consensus 224 ~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 224 ATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 45566788888999999999999999999999999999843 378999999999999999987773
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.92 E-value=4.5e-10 Score=101.19 Aligned_cols=61 Identities=26% Similarity=0.425 Sum_probs=53.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhccCCCCCC------CCChhhHHHHHHHHHHHHHHHHHHHhcccC
Q 023215 185 THPRSIAERVRRTRISDRIRKLQDLVPNMDK------QTNTADMLEEAVEYVKFLQKQIEILSYGRN 245 (285)
Q Consensus 185 ~~~HsiaERrRRerIneri~~Lq~LVP~~~K------~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~~ 245 (285)
+..|..+||+||+.|+..+..|++|||.|.. ++.||.||..+|+||.+|+.++.+.+.+..
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s 129 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVS 129 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999999998754 266999999999999999999888776543
No 6
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.26 E-value=5.4e-07 Score=95.75 Aligned_cols=67 Identities=30% Similarity=0.453 Sum_probs=59.6
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 023215 182 GCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGRNSQS 248 (285)
Q Consensus 182 g~a~~~HsiaERrRRerIneri~~Lq~LVP~~~K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~~~~s 248 (285)
+.++.+||++|||-|..|||||.+|+++||+..-++.|..+|..||+||++|+...+.+........
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 4567899999999999999999999999998877799999999999999999999888877655433
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.22 E-value=1.2e-06 Score=92.28 Aligned_cols=52 Identities=25% Similarity=0.480 Sum_probs=48.8
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhccCCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 023215 185 THPRSIAERVRRTRISDRIRKLQDLVPNMD---KQTNTADMLEEAVEYVKFLQKQ 236 (285)
Q Consensus 185 ~~~HsiaERrRRerIneri~~Lq~LVP~~~---K~~DKAsIL~eAI~YIK~LQ~Q 236 (285)
+.+|+.+|||||+++|.-|.+|-+|||.+. .|+||-+||.+||++||.++.+
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 678999999999999999999999999998 5699999999999999988875
No 8
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.21 E-value=6e-07 Score=83.39 Aligned_cols=55 Identities=31% Similarity=0.499 Sum_probs=47.2
Q ss_pred CccHHHHHHHHHHHHHHHHHhccCCCCCC-------CCChhhHHHHHHHHHHHHHHHHHHHh
Q 023215 187 PRSIAERVRRTRISDRIRKLQDLVPNMDK-------QTNTADMLEEAVEYVKFLQKQIEILS 241 (285)
Q Consensus 187 ~HsiaERrRRerIneri~~Lq~LVP~~~K-------~~DKAsIL~eAI~YIK~LQ~QVq~Le 241 (285)
.|-+.|||||.|||+-|.+|++|||-+.+ +++||.||+-||+|++.||.+...--
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~ 96 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAA 96 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccccc
Confidence 46789999999999999999999996543 27899999999999999998765433
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.94 E-value=2.2e-05 Score=72.55 Aligned_cols=59 Identities=24% Similarity=0.391 Sum_probs=49.8
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCCCC--ChhhHHHHHHHHHHHHHHHHHHHhc
Q 023215 184 ATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQT--NTADMLEEAVEYVKFLQKQIEILSY 242 (285)
Q Consensus 184 a~~~HsiaERrRRerIneri~~Lq~LVP~~~K~~--DKAsIL~eAI~YIK~LQ~QVq~Le~ 242 (285)
++..||..||+||..|++.|..|+.+||.....+ +.++||+.|+.||+.|+.+..+.+.
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~ 119 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQ 119 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHH
Confidence 4557999999999999999999999999765532 2689999999999999887666554
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.61 E-value=0.00014 Score=68.40 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=50.0
Q ss_pred ccHHHHHHHHHHHHHHHHHhc-cCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcccC
Q 023215 188 RSIAERVRRTRISDRIRKLQD-LVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGRN 245 (285)
Q Consensus 188 HsiaERrRRerIneri~~Lq~-LVP~~~K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~~ 245 (285)
-++-||||-.|+||-|.+|+. -+++-+.++-|+.||..||+||..||.-++++.++..
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 457799999999999999964 5677777789999999999999999999998887543
No 11
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.31 E-value=0.00024 Score=64.32 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=51.0
Q ss_pred CccHHHHHHHHHHHHHHHHHhccCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 023215 187 PRSIAERVRRTRISDRIRKLQDLVPNM---DKQTNTADMLEEAVEYVKFLQKQIEILSYGR 244 (285)
Q Consensus 187 ~HsiaERrRRerIneri~~Lq~LVP~~---~K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~ 244 (285)
.++..||.|=+.+|..|..||.+||.. +|++.|..+|..||.||++|++-++.-+..+
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 456679999999999999999999953 5669999999999999999999888777665
No 12
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.04 E-value=0.0013 Score=53.29 Aligned_cols=53 Identities=28% Similarity=0.545 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCC-----CCChhhHHHHHHHHHHHHHHHHHHHhcccC
Q 023215 193 RVRRTRISDRIRKLQDLVPNMDK-----QTNTADMLEEAVEYVKFLQKQIEILSYGRN 245 (285)
Q Consensus 193 RrRRerIneri~~Lq~LVP~~~K-----~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~~ 245 (285)
|---+.|+|-+..||.|+|.... +...+-||.|+..||+.||.+|..|.+...
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs 73 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS 73 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457899999999999996422 246788999999999999999999987544
No 13
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=96.90 E-value=0.00046 Score=66.65 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHh
Q 023215 189 SIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIEILS 241 (285)
Q Consensus 189 siaERrRRerIneri~~Lq~LVP~~~-K~~DKAsIL~eAI~YIK~LQ~QVq~Le 241 (285)
|-.||||=+-||-.|..|+.|+|.-. .++.||.||+.+.+||..|+.+.-+|-
T Consensus 65 NsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll 118 (373)
T KOG0561|consen 65 NSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL 118 (373)
T ss_pred cchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 45799999999999999999999532 248999999999999999987655443
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.22 E-value=0.025 Score=57.99 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=45.4
Q ss_pred CccHHHHHHHHHHHHHHHHHhccCCC---CCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 023215 187 PRSIAERVRRTRISDRIRKLQDLVPN---MDKQTNTADMLEEAVEYVKFLQKQIEILS 241 (285)
Q Consensus 187 ~HsiaERrRRerIneri~~Lq~LVP~---~~K~~DKAsIL~eAI~YIK~LQ~QVq~Le 241 (285)
..+..||.|=.-||+-|++|..+.=- .+|.-.|--||..||.-|-.|++||.+-.
T Consensus 529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 45777999999999999999987652 33333689999999999999999998744
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=91.49 E-value=0.095 Score=46.68 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=42.6
Q ss_pred CccHHHHHHHHHHHHHHHHHhccCCC--CCCCCChhhHHHHHHHHHHHHHH
Q 023215 187 PRSIAERVRRTRISDRIRKLQDLVPN--MDKQTNTADMLEEAVEYVKFLQK 235 (285)
Q Consensus 187 ~HsiaERrRRerIneri~~Lq~LVP~--~~K~~DKAsIL~eAI~YIK~LQ~ 235 (285)
-|++-||+|=..+|+-|.+||.+||. .+| ..|.-.|.-|-.||-||-.
T Consensus 81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 81 MANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhh
Confidence 47889999999999999999999995 455 7888899999999999865
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=86.49 E-value=0.38 Score=51.15 Aligned_cols=42 Identities=21% Similarity=0.481 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC---CCCCChhhHHHHHHHHHHH
Q 023215 191 AERVRRTRISDRIRKLQDLVPNM---DKQTNTADMLEEAVEYVKF 232 (285)
Q Consensus 191 aERrRRerIneri~~Lq~LVP~~---~K~~DKAsIL~eAI~YIK~ 232 (285)
|.|.||.|=|+-|.+|..++|-- .-++|||+|+.-||-|+|-
T Consensus 53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 68999999999999999999932 2258999999999999873
No 17
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=76.05 E-value=2.8 Score=42.85 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC---CCCCChhhHHHHHHHHHHHH
Q 023215 191 AERVRRTRISDRIRKLQDLVPNM---DKQTNTADMLEEAVEYVKFL 233 (285)
Q Consensus 191 aERrRRerIneri~~Lq~LVP~~---~K~~DKAsIL~eAI~YIK~L 233 (285)
+.|.||++=|-.|.+|-+|+|-. +-+.||++|+.-+-.|||.-
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 68899999999999999999943 33589999999999999853
No 18
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=73.99 E-value=3 Score=43.82 Aligned_cols=40 Identities=23% Similarity=0.494 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhccCCC----CCCCCChhhHHHHHHHHHHH
Q 023215 192 ERVRRTRISDRIRKLQDLVPN----MDKQTNTADMLEEAVEYVKF 232 (285)
Q Consensus 192 ERrRRerIneri~~Lq~LVP~----~~K~~DKAsIL~eAI~YIK~ 232 (285)
-+|-|+|+|--+..|-.|+|- +.| +||-+||.-+|-|++-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisK-LDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISK-LDKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhh-hhhhhhhhhhHHHHHH
Confidence 567799999999999999994 455 8999999999999863
No 19
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=61.00 E-value=5.6 Score=37.32 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCCCC--CCChhhHHHHHHHHHHHHHH
Q 023215 189 SIAERVRRTRISDRIRKLQDLVPNMDK--QTNTADMLEEAVEYVKFLQK 235 (285)
Q Consensus 189 siaERrRRerIneri~~Lq~LVP~~~K--~~DKAsIL~eAI~YIK~LQ~ 235 (285)
|.-||.|--.+|+-+..||.+||...+ ++.|.-.|.-|-+||..|+.
T Consensus 77 NaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 77 NARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred cchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 445888888999999999999995322 37788899899999988875
No 20
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=40.09 E-value=18 Score=31.94 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHH
Q 023215 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKF 232 (285)
Q Consensus 196 RerIneri~~Lq~LVP~~~K~~DKAsIL~eAI~YIK~ 232 (285)
-+-|-+||.+|+++||+... .--.+...-+..++|.
T Consensus 48 ~ETl~ERi~ALkDm~Pp~~R-~~i~~~~s~t~s~~ks 83 (145)
T TIGR00986 48 EETFTDRIYALKDIVPPTTR-GWIYHKYSTTTNFVKS 83 (145)
T ss_pred cCcHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHHHHH
Confidence 46788999999999997654 3334444444455444
No 21
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=38.74 E-value=47 Score=32.17 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCCC--CCCChhhHHHHHHHHHHHHHHHH
Q 023215 189 SIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQI 237 (285)
Q Consensus 189 siaERrRRerIneri~~Lq~LVP~~~--K~~DKAsIL~eAI~YIK~LQ~QV 237 (285)
+..||+|=.-+|.-|..|+..||..+ +++.|-..|.-|-.||--|-...
T Consensus 179 narErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 179 NARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred chHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 45688999999999999999999654 34678889999999998886544
No 22
>PRK13702 replication protein; Provisional
Probab=32.86 E-value=96 Score=25.27 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=23.6
Q ss_pred CCCCccHHHHHHHH--HHHHHHHHHhccCCCCCC
Q 023215 184 ATHPRSIAERVRRT--RISDRIRKLQDLVPNMDK 215 (285)
Q Consensus 184 a~~~HsiaERrRRe--rIneri~~Lq~LVP~~~K 215 (285)
+-+|++.+||.|.- |..+.-++|+-+||+.-|
T Consensus 20 KG~Pls~aErQr~svaRKr~THkei~vfi~n~lK 53 (85)
T PRK13702 20 KGNPLSAAEKQRASVARKRATHKEIKVFIQNPLK 53 (85)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhhhheeecHHHH
Confidence 33789999998764 455567788999997544
No 23
>PHA00370 III attachment protein
Probab=31.57 E-value=1.1e+02 Score=29.74 Aligned_cols=27 Identities=4% Similarity=-0.010 Sum_probs=17.6
Q ss_pred CChhhhhh--hccccCCCCCCCccccCCC
Q 023215 92 SSPADLFD--GYFSNYATPSSYDYVDVSP 118 (285)
Q Consensus 92 s~~~~~~~--~~~~~~~~~~~~d~~~~~p 118 (285)
|.-..||. .||.+++..-+|-.|...+
T Consensus 224 S~~~~~l~~~~~~PslP~~n~C~~FV~~~ 252 (297)
T PHA00370 224 SPLESFLNDGALRPSLPEGHGCTPFVFAQ 252 (297)
T ss_pred cHHHHhhcccccccCCCCCCCCCcceeec
Confidence 33345774 6888887777777765444
No 24
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=30.37 E-value=14 Score=39.95 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=45.7
Q ss_pred CccHHHHHHHHHHHHHHHHHhccCCCCCCC----CChhhHHHHHHHHHHHHHHHHHHHhcc
Q 023215 187 PRSIAERVRRTRISDRIRKLQDLVPNMDKQ----TNTADMLEEAVEYVKFLQKQIEILSYG 243 (285)
Q Consensus 187 ~HsiaERrRRerIneri~~Lq~LVP~~~K~----~DKAsIL~eAI~YIK~LQ~QVq~Le~~ 243 (285)
.|+-+|.+||+.|.-.+..|-.++.+..+. |.++.-+...++||-.++.+...+.++
T Consensus 654 t~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e 714 (856)
T KOG3582|consen 654 THISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEE 714 (856)
T ss_pred cCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchh
Confidence 477899999999999999999999976653 445556999999998887766555543
No 25
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=29.69 E-value=35 Score=29.71 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhccCCCCCC
Q 023215 195 RRTRISDRIRKLQDLVPNMDK 215 (285)
Q Consensus 195 RRerIneri~~Lq~LVP~~~K 215 (285)
.-+-|-+||-+|+++||+...
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R 69 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVR 69 (137)
T ss_pred ccccHHHHHHHHhccCCHHHH
Confidence 356788899999999997544
No 26
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.97 E-value=46 Score=26.50 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCC
Q 023215 223 LEEAVEYVKFLQKQIEILSYGRNSQ 247 (285)
Q Consensus 223 L~eAI~YIK~LQ~QVq~Le~~~~~~ 247 (285)
+..||+-|.-||.+|.+|...+...
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l 37 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 5679999999999999999877643
No 27
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=28.18 E-value=54 Score=30.76 Aligned_cols=15 Identities=40% Similarity=0.539 Sum_probs=7.8
Q ss_pred CCCCCCCCCcccccc
Q 023215 20 GGRGELSRGGLARLR 34 (285)
Q Consensus 20 ~g~~~~~~~~l~r~~ 34 (285)
|||+++-+++.+|.+
T Consensus 100 Ggg~gg~rgppsrrS 114 (241)
T KOG0105|consen 100 GGGGGGRRGPPSRRS 114 (241)
T ss_pred CCCCCcccCCccccc
Confidence 444455555666643
No 28
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=27.72 E-value=46 Score=30.07 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCC-CChhhHHHHHHHHHHHHH
Q 023215 191 AERVRRTRISDRIRKLQDLVPNMDKQ-TNTADMLEEAVEYVKFLQ 234 (285)
Q Consensus 191 aERrRRerIneri~~Lq~LVP~~~K~-~DKAsIL~eAI~YIK~LQ 234 (285)
.||.|..++++.+.-|+.|+|++... +.+---|.-+-+||.+|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHH
Confidence 48899999999999999999976431 222222444555555543
No 29
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=24.74 E-value=69 Score=33.61 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=13.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHH
Q 023215 217 TNTADMLEEAVEYVKFLQKQIE 238 (285)
Q Consensus 217 ~DKAsIL~eAI~YIK~LQ~QVq 238 (285)
+|-..+|..||+-++.-++||+
T Consensus 506 ~niq~llkva~dnar~qekQiq 527 (641)
T KOG3915|consen 506 TNIQGLLKVAIDNARAQEKQIQ 527 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777776665555544
No 30
>PHA00370 III attachment protein
Probab=23.35 E-value=74 Score=30.91 Aligned_cols=14 Identities=14% Similarity=0.098 Sum_probs=6.9
Q ss_pred cccCCCCCCCCCCC
Q 023215 147 VEQSGQVPGGVSNL 160 (285)
Q Consensus 147 g~~~~~~~~~~S~~ 160 (285)
+.--+++|..+-|+
T Consensus 233 ~~~~PslP~~n~C~ 246 (297)
T PHA00370 233 GALRPSLPEGHGCT 246 (297)
T ss_pred cccccCCCCCCCCC
Confidence 33344566655554
No 31
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.69 E-value=1.4e+02 Score=21.93 Aligned_cols=42 Identities=31% Similarity=0.406 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 023215 192 ERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILS 241 (285)
Q Consensus 192 ERrRRerIneri~~Lq~LVP~~~K~~DKAsIL~eAI~YIK~LQ~QVq~Le 241 (285)
=|.-|--+...+.++..++-- ++ .++|.+||+.+-.+++.+.
T Consensus 16 lR~~RHD~~NhLqvI~gllql-g~-------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 16 LRAQRHDFLNHLQVIYGLLQL-GK-------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-T--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CC-------HHHHHHHHHHHHHHHHHHH
Confidence 356666777788888888863 33 4678999999999888764
Done!